BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031682
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 92/123 (74%), Gaps = 6/123 (4%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQ-----GGYASNGAPGQGPQSEGDSSN 55
MTEMNGVYCSSR MRIG ATP+K S ++Q YSSQ GGYASNGA G QS+GDSSN
Sbjct: 236 MTEMNGVYCSSRAMRIGVATPKKPSAHEQ-YSSQAVILSGGYASNGAATHGSQSDGDSSN 294
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTM 115
TTIFVGGLD VTDE+LRQ F+Q+GE+ SVKIP GKGCGFVQF++ AI + +
Sbjct: 295 TTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAI 354
Query: 116 EGK 118
GK
Sbjct: 355 IGK 357
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 7/54 (12%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFAN 100
S+ +IFVG L +VTD LR F S+Y + K+ V KG GFV+F +
Sbjct: 175 SDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGD 228
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC------GFVQF 98
N TI++G L + + L FSQ GE+ SVKI K GFV+F
Sbjct: 83 NKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEF 132
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/123 (60%), Positives = 94/123 (76%), Gaps = 5/123 (4%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQ-----GGYASNGAPGQGPQSEGDSSN 55
+TEMNG YCS+R MR+G ATP+++ QQQ+SSQ GG+ SNG+ G G QS+G+S+N
Sbjct: 261 LTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTN 320
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTM 115
TIFVGG+DP+V DEDLRQPFSQ+GE+ SVKIPVGKGCGFVQFA+ AI + T+
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTV 380
Query: 116 EGK 118
GK
Sbjct: 381 IGK 383
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 7/53 (13%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFAN 100
+ ++FVG L P+VTD L + FS +Y + S K+ + KG GFV+F +
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGD 253
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 77/118 (65%), Positives = 89/118 (75%), Gaps = 7/118 (5%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK++GYQQQ GGY +GA +SEGD+ NTTIFV
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQ----GGYMPSGA---FTRSEGDTINTTIFV 310
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGK 118
GGLD +VTDEDL+QPFS++GEI SVKIPVGKGCGFVQF N A+ + T+ GK
Sbjct: 311 GGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGK 368
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANSL 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 193 ENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 252
Query: 103 GQIMA---INGV 111
+ A +NGV
Sbjct: 253 ERTKAMTEMNGV 264
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/118 (63%), Positives = 86/118 (72%), Gaps = 7/118 (5%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CSSR MRIG ATPRK++GYQQQ GGY NG + EGD NTTIFV
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKTNGYQQQ----GGYMPNGTLTR---PEGDIMNTTIFV 308
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGK 118
GGLD +VTDEDL+QPF+++GEI SVKIPVGKGCGFVQF N A+ + T+ GK
Sbjct: 309 GGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGK 366
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------GKGCGFVQFANSL 102
E + + +IFVG L P+V+D L + FS+ Y + + K+ + KG GFV+F +
Sbjct: 191 ENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDEN 250
Query: 103 GQIMA---INGV 111
+ A +NGV
Sbjct: 251 ERTKAMTEMNGV 262
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 86/118 (72%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG +CSSR MR+G ATP++++ Y QQ SQ + G G G S+G+S+N+TIFV
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGK 118
GGLD +VT+EDL QPFS +GE+ SVKIPVGKGCGFVQFAN AI + T+ GK
Sbjct: 332 GGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIGK 389
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFAN 100
+ +IFVG L P+V+D L + F+ +Y + K+ + KG GFV+F +
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGD 264
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 70/117 (59%), Gaps = 8/117 (6%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNGV CS+RPMRIG A +K G Q+ + Q A+ G E D +NTTIFV
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQG--------ESDPNNTTIFV 286
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEG 117
GGLDP V +E LRQ FS YGE+ VKI GK CGFVQF A++ + T G
Sbjct: 287 GGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTRASAEQALSSLNGTQLG 343
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 10/74 (13%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPV------GKGCGFVQFAN 100
+ DS+ TIFVG L +VTD L++ F S Y + K+ KG GFV+FA+
Sbjct: 168 ERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFAD 227
Query: 101 SLGQIMA---INGV 111
Q+ A +NGV
Sbjct: 228 ESEQLRAMTEMNGV 241
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 7/105 (6%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGY-----ASNGAPGQG--PQSEGDS 53
M EMNG+YCS+RPMRI AATP+K+ G QQQY ++ Y ++ AP Q E D
Sbjct: 175 MAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDV 234
Query: 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQF 98
+ TTI V LD NVT+E+L++ FSQ GE+ VKIP KG G+VQF
Sbjct: 235 TCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQF 279
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPV------GKGCGFVQFAN 100
+ +IFVG L P+VTD L++ F Y + K+ KG GFV+FA
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 43 PGQGPQSEGDSSNT-----TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------ 91
P Q PQ T T+++G L V + L FSQ GE+ SVK+ K
Sbjct: 6 PPQPPQGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPE 65
Query: 92 GCGFVQF 98
G GF++F
Sbjct: 66 GYGFIEF 72
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 102 bits (255), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 66/101 (65%), Gaps = 10/101 (9%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKS-SGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIF 59
MTEMNGV CS+RPMRIG A +K +G + Y S G ++ D +NTT+F
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAA---------GVTTDNDPNNTTVF 264
Query: 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
VGGLD +VTD+ L+ FSQYGEI VKIP GK CGFVQF+
Sbjct: 265 VGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSE 305
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIPVG------KGCGFVQFANSLGQ 104
DS + TIFVG L +VTD L + F + Y + K+ + KG GFV+F++ Q
Sbjct: 151 DSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQ 210
Query: 105 IMA---INGV 111
I A +NGV
Sbjct: 211 IRAMTEMNGV 220
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 100 bits (248), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 68/105 (64%), Gaps = 18/105 (17%)
Query: 1 MTEMNGVYCSSRPMRIGAAT-----PRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSN 55
MTEMNG YCS+RPMRIG A P + + YQ ++QG A + D +N
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQ---NTQGANAG----------DNDPNN 259
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
TTIFVGGLD NVTD++L+ F Q+GE+ VKIP GK CGFVQ+AN
Sbjct: 260 TTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYAN 304
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 37 YASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPV------ 89
+A GA + Q+EG + TIFVG L P VTD L F YG + K+ +
Sbjct: 137 WAQAGAGEKRFQTEG--PDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGR 194
Query: 90 GKGCGFVQFANSLGQIMAI 108
KG GFV+FA+ Q+ A+
Sbjct: 195 SKGYGFVRFADENEQMRAM 213
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/100 (52%), Positives = 63/100 (63%), Gaps = 9/100 (9%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
MTEMNG YCSSRPMR G A +K Q Y + QG E D +NTTIFV
Sbjct: 232 MTEMNGQYCSSRPMRTGPAANKKPLTMQP-----ASYQNT----QGNSGESDPTNTTIFV 282
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN 100
G +D +VT++DL+ F Q+GE+ VKIP GK CGFVQ+AN
Sbjct: 283 GAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYAN 322
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 44 GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIP------VGKGCGFV 96
G G + + + T+FVG L P+VTD L + F Y + K+ KG GFV
Sbjct: 161 GAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFV 220
Query: 97 QFANSLGQIMAI 108
+FA+ QI A+
Sbjct: 221 RFADESEQIRAM 232
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 65/115 (56%), Gaps = 9/115 (7%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYS------SQGGYASNGAPGQGPQSEGDSS 54
+ EM G C RP+R+G ATP+ + + G+ S P PQ D++
Sbjct: 245 LAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPV--PQF-ADTA 301
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAIN 109
N+T+FVGGL V++E+L+ F +GEI VKIP GKGCGFVQF N +AIN
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAIN 356
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 36 GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKI------P 88
+AS G G +S +S +IFVG L PNV + D+ F S+Y S KI
Sbjct: 168 NWASGG--GLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225
Query: 89 VGKGCGFVQFANSLGQIMAI 108
V +G GFV+F + Q A+
Sbjct: 226 VSRGYGFVRFTDENDQKSAL 245
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 79.3 bits (194), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 25/131 (19%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEG--------- 51
+ M G C RP+RI A+P+ S+ A++ A G P S
Sbjct: 241 LMHMQGYLCQGRPLRISVASPK----------SRASIAADSALGIVPTSTSNRQPNQDLC 290
Query: 52 --DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAIN 109
D NTT+FVGGL N++++DL+ F +G I ++KIP GKGCGFVQ++ AIN
Sbjct: 291 SMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAIN 350
Query: 110 GVGHTMEGKFM 120
TM+G +
Sbjct: 351 ----TMQGALV 357
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 27 YQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASV 85
++ +++ GG N + P+ +IFVG L P D DL F S Y S
Sbjct: 160 FKLNWATGGGIQHNNFVSRDPE-------FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSA 212
Query: 86 KIPV------GKGCGFVQFANSLGQIMAI 108
KI V + GFV+F++ Q A+
Sbjct: 213 KIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV 111
D +NTT+F+GGL VT+++LR F +G I VKIPVGK CGFVQ+ + L AI G+
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGM 368
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 11/74 (14%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPF-SQYGEIASVKIP------VGKGCGFVQFANSLGQIM 106
+N +IFVG L PNVT+ L + F ++Y + KI + KG GFV+F NS Q +
Sbjct: 161 NNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQL 220
Query: 107 AINGVGHTMEGKFM 120
A++ M+G F+
Sbjct: 221 ALS----EMQGVFL 230
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV 111
D +NTT+FVGGL P T+ LR F +G I +V+IP GK CGFV+F + +I G+
Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGL 415
>sp|Q6NZZ9|RBM22_DANRE Pre-mRNA-splicing factor RBM22 OS=Danio rerio GN=rbm22 PE=2 SV=1
Length = 425
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D S TT+++GGL NVTD +LR F Q+GEI ++ I + C F+QFA
Sbjct: 228 DKSITTLYIGGLGENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFA 275
>sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein 49 OS=Oryza sativa
subsp. japonica GN=Os07g0281000 PE=2 SV=1
Length = 486
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQF---------ANSL 102
D S T+++GGLD VT++DLR F +GEI ++++ + + C FV + A L
Sbjct: 224 DESIRTLYIGGLDSRVTEQDLRDQFYAHGEIETIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 103 GQIMAINGV 111
+ I GV
Sbjct: 284 ANKLVIKGV 292
>sp|Q9LNV5|C3H4_ARATH Zinc finger CCCH domain-containing protein 4 OS=Arabidopsis
thaliana GN=At1g07360 PE=2 SV=1
Length = 481
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQF--------- 98
+S D S T++VGGL+ + ++D+R F +GEI S++I K C FV +
Sbjct: 220 ESPDDESIKTLYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKA 279
Query: 99 ANSLGQIMAING 110
A L + ING
Sbjct: 280 AQELSNRLVING 291
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 22 RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81
R+S + + G + APG GD S T +++G ++P + +E L Q F ++G
Sbjct: 242 RRSMDVPSRRNRSSGVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGP 299
Query: 82 IASVKI---------PVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124
+ASVKI + CGFV F N A+ + M F M +G
Sbjct: 300 LASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLG 351
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 11/112 (9%)
Query: 22 RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81
R+S + + G + APG GD S T +++G ++P + +E L Q F ++G
Sbjct: 242 RRSMDAPSRRNRSSGVLDDYAPGS--HDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGP 299
Query: 82 IASVKI---------PVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124
+ASVKI + CGFV F N A+ + M F M +G
Sbjct: 300 LASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLG 351
>sp|Q4V7D7|RBM22_RAT Pre-mRNA-splicing factor RBM22 OS=Rattus norvegicus GN=Rbm22 PE=2
SV=1
Length = 420
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D + TT++VGGL +T+ DLR F Q+GEI +V + + C F+QFA
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTVTVVQRQQCAFIQFA 275
>sp|Q9ZW36|C3H25_ARATH Zinc finger CCCH domain-containing protein 25 OS=Arabidopsis
thaliana GN=At2g29580 PE=2 SV=1
Length = 483
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQF--------- 98
+S D S T++VGGL+ V ++D+R F +GEI S++I K C FV +
Sbjct: 220 ESPEDQSIRTLYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKA 279
Query: 99 ANSLGQIMAING 110
A L + +NG
Sbjct: 280 AEELSNRLVVNG 291
>sp|Q5ZM16|RBM22_CHICK Pre-mRNA-splicing factor RBM22 OS=Gallus gallus GN=RBM22 PE=2 SV=1
Length = 420
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA
Sbjct: 228 DKTITTLYVGGLGDTITESDLRNHFYQFGEIRTITVVQRQQCAFIQFA 275
>sp|Q8BHS3|RBM22_MOUSE Pre-mRNA-splicing factor RBM22 OS=Mus musculus GN=Rbm22 PE=2 SV=1
Length = 420
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA 275
>sp|Q4R4J1|RBM22_MACFA Pre-mRNA-splicing factor RBM22 OS=Macaca fascicularis GN=RBM22 PE=2
SV=1
Length = 420
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA 275
>sp|Q9NW64|RBM22_HUMAN Pre-mRNA-splicing factor RBM22 OS=Homo sapiens GN=RBM22 PE=1 SV=1
Length = 420
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA 275
>sp|Q5RAY5|RBM22_PONAB Pre-mRNA-splicing factor RBM22 OS=Pongo abelii GN=RBM22 PE=2 SV=1
Length = 420
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA 275
>sp|Q3B7L8|RBM22_BOVIN Pre-mRNA-splicing factor RBM22 OS=Bos taurus GN=RBM22 PE=2 SV=1
Length = 420
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D + TT++VGGL +T+ DLR F Q+GEI ++ + + C F+QFA
Sbjct: 228 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFA 275
>sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein 40 OS=Oryza sativa
subsp. japonica GN=Os06g0170500 PE=2 SV=1
Length = 482
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV 111
D S T+++GGL+ +T++DLR F +GEI S+++ + + C FV + G A +
Sbjct: 224 DESIRTLYIGGLNNRITEQDLRDQFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEEL 283
Query: 112 GHTM 115
+ +
Sbjct: 284 ANKL 287
>sp|Q6P616|RBM22_XENTR Pre-mRNA-splicing factor RBM22 OS=Xenopus tropicalis GN=rbm22 PE=2
SV=1
Length = 417
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMA 107
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA MA
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEMA 283
>sp|Q804A9|DAZL_CHICK Deleted in azoospermia-like OS=Gallus gallus GN=DAZL PE=2 SV=1
Length = 289
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANSLGQ 104
EG T+FVGG+D + + ++R F QYG + VKI V KG GFV F +++
Sbjct: 30 EGKIMPNTVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVD- 88
Query: 105 IMAINGVGHTMEGKFMMVMGMLFRHQMTQACTLQQLRPMGL 145
+ I ++ GK + +G R Q C+ Q RP+
Sbjct: 89 VQKIVESQISVHGK-RLKLGPAIRKQQN-LCSYMQPRPLAF 127
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 46 GPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---------PVGKGCGFV 96
G GD S T +++G ++P + +E L Q F ++G +ASVKI + CGFV
Sbjct: 263 GSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFV 322
Query: 97 QFANSLGQIMAINGVGHTMEGKFMMVMG 124
F N A+ + M F M +G
Sbjct: 323 AFMNRRDAERALKNLNGKMIMSFEMKLG 350
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Query: 49 SEGDSSNTT--IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN 100
S GD+ N T IFVGGL P +TDE+ RQ F YG + V I +G GFV F +
Sbjct: 101 SGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Query: 101 SLGQIMAINGVGHTMEGKFMMVMGML 126
++ H + GK + V L
Sbjct: 161 EDAVDSVLHKTFHDLSGKQVEVKRAL 186
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFAN 100
DS +FVGG+ ++ LR+ F+ YGE++ + K G GFV F++
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSD 56
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGV 111
IFVGGL+P T+E +R+ F Q+GEI ++++P+ +G F+ F + V
Sbjct: 161 IFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEE-------DPV 213
Query: 112 GHTMEGKFMMVMG 124
+E KF V G
Sbjct: 214 KKVLEKKFHTVSG 226
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 40 NGAPG-QGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKG 92
NGA G Q S+ + +FVGGL + + +DL+ F+++GE+ I + +G
Sbjct: 58 NGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 117
Query: 93 CGFVQFANSLGQIMAINGVGHTMEGKFM 120
GF+ F +S ++ H ++G+ +
Sbjct: 118 FGFILFKDSSSVEKVLDQKEHRLDGRVI 145
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA 99
D S TT++VGGL +++ +LR F Q+GEI ++ + + C F+QFA
Sbjct: 228 DKSITTLYVGGLGDTISESELRNHFYQFGEIRTITVVQRQQCAFIQFA 275
>sp|Q5RFL9|NONO_PONAB Non-POU domain-containing octamer-binding protein OS=Pongo abelii
GN=NONO PE=2 SV=3
Length = 471
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 29 QQYSSQG-GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 87
QQ SSQ G + + P + + + +FVG L P++T+E++R+ F +YG+ V I
Sbjct: 46 QQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI 105
Query: 88 PVGKGCGFVQF-ANSLGQIMAINGVGHTMEGKFMMV 122
KG GF++ +L +I + + GK + V
Sbjct: 106 HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 141
>sp|Q15233|NONO_HUMAN Non-POU domain-containing octamer-binding protein OS=Homo sapiens
GN=NONO PE=1 SV=4
Length = 471
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 29 QQYSSQG-GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 87
QQ SSQ G + + P + + + +FVG L P++T+E++R+ F +YG+ V I
Sbjct: 46 QQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI 105
Query: 88 PVGKGCGFVQF-ANSLGQIMAINGVGHTMEGKFMMV 122
KG GF++ +L +I + + GK + V
Sbjct: 106 HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 141
>sp|Q99K48|NONO_MOUSE Non-POU domain-containing octamer-binding protein OS=Mus musculus
GN=Nono PE=1 SV=3
Length = 473
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 29 QQYSSQG-GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 87
QQ SSQ G + + P + + + +FVG L P++T+E++R+ F +YG+ V I
Sbjct: 48 QQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI 107
Query: 88 PVGKGCGFVQF-ANSLGQIMAINGVGHTMEGKFMMV 122
KG GF++ +L +I + + GK + V
Sbjct: 108 HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 143
>sp|Q5FVM4|NONO_RAT Non-POU domain-containing octamer-binding protein OS=Rattus
norvegicus GN=Nono PE=2 SV=3
Length = 476
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 29 QQYSSQG-GYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI 87
QQ SSQ G + + P + + + +FVG L P++T+E++R+ F +YG+ V I
Sbjct: 51 QQASSQNEGLTIDLKNFRKPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFI 110
Query: 88 PVGKGCGFVQF-ANSLGQIMAINGVGHTMEGKFMMV 122
KG GF++ +L +I + + GK + V
Sbjct: 111 HKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 146
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEG 117
IFVG L PN T E++R FSQYG+I+ I K GFV + AI + H M
Sbjct: 4 IFVGNLSPNTTAEEIRSLFSQYGKISECDIV--KNFGFVHMDSKSEADEAIQNLHHYMLN 61
Query: 118 KFMMVMGM----------LFRHQMTQACTLQQLR 141
M + M L ++ +CT Q+LR
Sbjct: 62 GMAMNVEMSKGKPKTSTKLHVGNISSSCTNQELR 95
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGH 113
++T + VG + + T+++LR F +YG + V+ + K FV + AI+G+ +
Sbjct: 76 TSTKLHVGNISSSCTNQELRAKFEEYGPV--VECDIVKDYAFVHMERVEDAMEAISGLDN 133
Query: 114 T-MEGKFMMV 122
T +GK M V
Sbjct: 134 TAFQGKLMSV 143
>sp|Q9FVQ1|NUCL1_ARATH Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1
Length = 557
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 20/131 (15%)
Query: 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGG 62
E +G R +R+ A R G + ++ Q G +G G GD IFV G
Sbjct: 356 EFHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDG------GDEKK--IFVKG 407
Query: 63 LDPNVTDED----LRQPFSQYGEIASVKIPV------GKGCGFVQFANSLGQIMAINGVG 112
D +++++D LR+ FS GEI +V +P+ KG +++F+ + + +N G
Sbjct: 408 FDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSEGKEKALELN--G 465
Query: 113 HTMEGKFMMVM 123
M G F +V+
Sbjct: 466 SDMGGGFYLVV 476
Score = 31.2 bits (69), Expect = 2.5, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 20 TPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY 79
TP+K S + ++ S+ + P + + T+F L N+ D+ F +
Sbjct: 264 TPKKKSSDVEMVDAE---KSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEA 320
Query: 80 GEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGK 118
GE+ V+ +G G V+FA+S A+ G + G+
Sbjct: 321 GEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGR 365
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASV------KIPVGKGCGFVQFANSLGQIMAINGV 111
+F+GGLD TDE L+Q F Q+GEI V K +G GF+ ++ + A N
Sbjct: 19 LFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNAR 78
Query: 112 GHTMEGKFM 120
H ++G+ +
Sbjct: 79 PHKVDGRVV 87
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANS 101
+ E ++ +FVGG+ + + DLR F QYG + S I V K G FV+F +
Sbjct: 100 RPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDY 159
Query: 102 LGQIMAINGVGHTMEGKFMMVMGML 126
H + GK + V L
Sbjct: 160 DPVDKICLSRNHQIRGKHIDVKKAL 184
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFV 60
+ +M G + R +R AT RK + Y S S S+ +N T++
Sbjct: 164 IQQMGGQWLGGRQIRTNWAT-RKPPAPKSTYESNTKQLSYDEV----VSQSSPNNCTVYC 218
Query: 61 GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV-GHTMEGKF 119
GG+ +T++ +RQ FS +G+I +++ KG FV+F++ AI V G T+EG
Sbjct: 219 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHV 278
Query: 120 M 120
+
Sbjct: 279 V 279
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGCGFVQFANSLGQIMAINGV 111
+FVG L P +T ED++ F+ +G I+ ++ KG GFV F N AI +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 112 G 112
G
Sbjct: 168 G 168
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
Query: 94 GFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH----QMTQACTLQQLR 141
GFV F N L AI +G G + R + TQ +QLR
Sbjct: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLR 209
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV-GH 113
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ AI V G
Sbjct: 221 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 280
Query: 114 TMEG 117
T+EG
Sbjct: 281 TIEG 284
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFA--NSLGQIMAIN 109
+FVGGLD + T E LR FSQYGE+ I K G GFV+F N +G ++A
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71
Query: 110 GVGHTMEGK 118
HT++G+
Sbjct: 72 --PHTLDGR 78
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 9 CSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVT 68
C+ R M+ + PR+ G+QQ+ P++E SN IFVGG+ N
Sbjct: 85 CTPRGMQPERSRPRE--GWQQKE---------------PRTENSRSNK-IFVGGIPHNCG 126
Query: 69 DEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122
+ +L++ F+++G + V + +G GF+ F + A+N H + GK + V
Sbjct: 127 ETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 186
Query: 123 MGMLFRHQMTQA 134
R +Q
Sbjct: 187 KRAEPRDSKSQT 198
>sp|O57437|DAZLA_XENLA Deleted in azoospermia-like-A OS=Xenopus laevis GN=dazl-a PE=1 SV=1
Length = 286
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANSLGQ 104
EG+ T+FVGG+D + + ++R F+++G + VKI V KG GF+ F++ +
Sbjct: 27 EGEIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDRTGVSKGYGFISFSDEVD- 85
Query: 105 IMAINGVGHTMEGKFMMVMGMLFRHQMTQACTLQQLRPMGLT 146
+ I + GK + +G R + CT Q RP+ L+
Sbjct: 86 VQKIVKSQISFHGK-KLKLGPAIR----KICTYVQPRPVVLS 122
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 40 NGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGC 93
N A Q + S++ +FVG L P +T ED++ F+ +G+I+ ++ KG
Sbjct: 81 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 140
Query: 94 GFVQFANSLGQIMAINGVG 112
GFV F N L AI +G
Sbjct: 141 GFVSFYNKLDAENAIVHMG 159
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV-GH 113
N T++ GG+ +TD+ +RQ FS +G+I +++ KG FV+F+ AI V G
Sbjct: 204 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 263
Query: 114 TMEG 117
T+EG
Sbjct: 264 TIEG 267
>sp|Q4V7Y4|DAZLB_XENLA Deleted in azoospermia-like-B OS=Xenopus laevis GN=dazl-b PE=2 SV=2
Length = 286
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQFANSLGQ 104
EG T+FVGG+D + + ++R F+++G + VKI V KG GF+ F++ +
Sbjct: 27 EGKIMPNTVFVGGIDITMDEIEIRDFFTRFGNVKEVKIITDRTGVSKGYGFISFSDEVD- 85
Query: 105 IMAINGVGHTMEGKFMMVMGMLFRHQMTQACTLQQLRPMGLT 146
I I + GK + +G R + CT Q RP+ L+
Sbjct: 86 IQKIVKSQISFHGK-KLKLGPAIR----KICTYVQPRPVVLS 122
>sp|P92204|NELFE_DROME Negative elongation factor E OS=Drosophila melanogaster GN=Nelf-E
PE=1 SV=1
Length = 280
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 7/100 (7%)
Query: 16 IGAATPRKSSGYQQQYSSQGGYASNGAPGQGP----QSEGDSSNTTIFVGGLDPNVTDED 71
I PR+ + YQ ++++ G P + P Q E + TIFV G VT++
Sbjct: 123 IIKEEPRRQNLYQH-FATERDREERGMPEKVPMDTAQPEKPRAGNTIFVSGN--KVTEDF 179
Query: 72 LRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV 111
L++ F+ YG I +V + + K GFV FA AI +
Sbjct: 180 LKKTFNDYGTIVNVSMEIEKSRGFVSFAKPESADRAIAEI 219
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK--GCGFVQFANSLGQIMAING 110
T I++ +DP+VT+E+ R+ F Q+GEI S + P GK G GFV ++ A++
Sbjct: 232 TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDE 291
Query: 111 VGHTMEGK 118
+ H E K
Sbjct: 292 M-HDKEVK 298
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI---PVGK---GCGFVQFAN 100
P + + +++VG LDP+VT+ L + FS G++AS+++ V + G +V + N
Sbjct: 42 PNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNN 101
Query: 101 SLGQIMAINGVGHTM-EGKFMMVM 123
+ A+ + +T+ +GK +M
Sbjct: 102 TADGERALEDLNYTLIKGKPCRIM 125
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKI 87
++V L +V DE LR+ F YG I S K+
Sbjct: 337 LYVKNLTDDVDDEKLRELFGPYGTITSAKV 366
>sp|Q8N9W6|BOLL_HUMAN Protein boule-like OS=Homo sapiens GN=BOLL PE=1 SV=2
Length = 283
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIP-----VGKGCGFVQF 98
IFVGG+D + DLR+ FSQYG + VKI V KG GFV F
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVTF 80
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,300,180
Number of Sequences: 539616
Number of extensions: 2315817
Number of successful extensions: 7754
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 215
Number of HSP's that attempted gapping in prelim test: 6706
Number of HSP's gapped (non-prelim): 1199
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)