Query 031682
Match_columns 155
No_of_seqs 140 out of 1523
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 03:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148 Apoptosis-promoting RN 99.9 1.3E-21 2.8E-26 140.3 9.7 118 1-129 121-238 (321)
2 TIGR01645 half-pint poly-U bin 99.8 4.8E-19 1E-23 142.3 11.1 117 1-133 166-288 (612)
3 TIGR01659 sex-lethal sex-letha 99.8 7.9E-19 1.7E-23 134.0 10.9 102 1-129 166-275 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 2.8E-18 6.1E-23 131.5 14.0 76 55-130 269-350 (352)
5 PLN03134 glycine-rich RNA-bind 99.8 1.1E-17 2.3E-22 113.2 12.5 79 53-131 32-116 (144)
6 TIGR01648 hnRNP-R-Q heterogene 99.7 1.1E-16 2.5E-21 128.4 12.8 100 7-130 207-308 (578)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.3E-16 7.2E-21 120.1 12.4 103 1-130 62-172 (352)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 4.5E-16 9.8E-21 124.0 13.1 129 1-129 330-480 (481)
9 TIGR01628 PABP-1234 polyadenyl 99.7 1.8E-16 3.9E-21 128.5 10.2 122 2-132 237-367 (562)
10 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.8E-15 3.9E-20 121.3 15.3 127 3-129 241-375 (509)
11 KOG0117 Heterogeneous nuclear 99.7 1.6E-16 3.4E-21 121.0 8.6 101 6-130 232-332 (506)
12 KOG0145 RNA-binding protein EL 99.7 1.3E-16 2.9E-21 114.4 7.0 103 1-130 100-210 (360)
13 TIGR01622 SF-CC1 splicing fact 99.7 1.2E-15 2.5E-20 120.9 13.0 111 3-128 149-265 (457)
14 TIGR01659 sex-lethal sex-letha 99.7 1.1E-15 2.4E-20 116.8 11.9 80 50-129 102-187 (346)
15 KOG0121 Nuclear cap-binding pr 99.7 2.6E-16 5.6E-21 101.7 6.5 76 52-127 33-114 (153)
16 PF00076 RRM_1: RNA recognitio 99.6 8.1E-16 1.8E-20 91.3 7.5 65 58-122 1-70 (70)
17 KOG0148 Apoptosis-promoting RN 99.6 9.4E-16 2E-20 110.4 7.6 79 52-130 59-143 (321)
18 TIGR01628 PABP-1234 polyadenyl 99.6 3.1E-15 6.7E-20 121.4 10.5 106 2-132 60-170 (562)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 1.4E-14 3E-19 115.6 13.8 111 4-129 60-174 (481)
20 PLN03120 nucleic acid binding 99.6 6.8E-15 1.5E-19 106.8 10.3 73 55-128 4-79 (260)
21 KOG0131 Splicing factor 3b, su 99.6 9.8E-16 2.1E-20 104.5 5.6 106 2-133 69-181 (203)
22 KOG0125 Ataxin 2-binding prote 99.6 3E-15 6.6E-20 110.3 8.1 78 52-129 93-174 (376)
23 KOG0107 Alternative splicing f 99.6 3.8E-15 8.2E-20 101.1 8.0 78 53-130 8-86 (195)
24 KOG0127 Nucleolar protein fibr 99.6 6.4E-15 1.4E-19 114.9 9.6 131 2-133 65-200 (678)
25 KOG0122 Translation initiation 99.6 2.5E-14 5.4E-19 101.7 10.2 78 53-130 187-270 (270)
26 KOG0114 Predicted RNA-binding 99.6 3.9E-14 8.5E-19 88.4 9.5 77 53-129 16-95 (124)
27 PF14259 RRM_6: RNA recognitio 99.6 3.4E-14 7.3E-19 84.6 8.1 65 58-122 1-70 (70)
28 KOG0124 Polypyrimidine tract-b 99.5 1.2E-15 2.5E-20 114.1 1.0 118 1-134 172-295 (544)
29 KOG0109 RNA-binding protein LA 99.5 2.5E-14 5.4E-19 104.1 7.5 99 1-130 53-151 (346)
30 KOG0123 Polyadenylate-binding 99.5 3.3E-14 7.1E-19 109.4 8.4 102 1-135 54-159 (369)
31 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.5E-13 3.3E-18 110.2 12.4 128 1-128 354-501 (509)
32 KOG4207 Predicted splicing fac 99.5 2.7E-14 6E-19 99.4 6.8 79 49-127 7-91 (256)
33 PLN03213 repressor of silencin 99.5 4.9E-14 1.1E-18 109.1 8.8 77 53-129 8-88 (759)
34 TIGR01645 half-pint poly-U bin 99.5 5.4E-14 1.2E-18 113.5 9.4 76 53-128 105-186 (612)
35 TIGR01648 hnRNP-R-Q heterogene 99.5 5.2E-14 1.1E-18 113.2 9.1 76 52-127 55-136 (578)
36 KOG0144 RNA-binding protein CU 99.5 2E-14 4.4E-19 109.3 5.6 85 53-137 122-214 (510)
37 PF13893 RRM_5: RNA recognitio 99.5 2.3E-13 4.9E-18 77.6 8.6 55 72-126 1-56 (56)
38 PLN03121 nucleic acid binding 99.5 1.8E-13 3.8E-18 98.2 9.9 74 53-127 3-79 (243)
39 smart00362 RRM_2 RNA recogniti 99.5 2.4E-13 5.1E-18 80.2 9.0 67 57-123 1-71 (72)
40 KOG0149 Predicted RNA-binding 99.5 6.4E-14 1.4E-18 99.2 6.6 75 52-127 9-89 (247)
41 KOG0113 U1 small nuclear ribon 99.5 4.3E-13 9.3E-18 97.9 10.0 81 53-133 99-185 (335)
42 KOG0105 Alternative splicing f 99.5 1.2E-13 2.6E-18 94.8 6.6 77 53-129 4-83 (241)
43 KOG0130 RNA-binding protein RB 99.5 1.5E-13 3.3E-18 89.7 6.7 80 51-130 68-153 (170)
44 KOG0111 Cyclophilin-type pepti 99.5 5.7E-14 1.2E-18 98.7 5.0 80 53-132 8-93 (298)
45 KOG0153 Predicted RNA-binding 99.5 2.5E-13 5.4E-18 100.9 8.5 83 47-129 220-303 (377)
46 KOG0117 Heterogeneous nuclear 99.5 6.4E-13 1.4E-17 101.6 10.8 91 39-129 67-164 (506)
47 KOG0127 Nucleolar protein fibr 99.4 1.3E-12 2.9E-17 102.1 11.4 77 54-130 291-379 (678)
48 TIGR01622 SF-CC1 splicing fact 99.4 2.9E-12 6.4E-17 101.6 12.6 77 52-129 86-168 (457)
49 KOG0131 Splicing factor 3b, su 99.4 4.2E-13 9.2E-18 91.7 6.1 75 53-127 7-87 (203)
50 cd00590 RRM RRM (RNA recogniti 99.4 3E-12 6.5E-17 75.7 9.2 69 57-125 1-74 (74)
51 KOG0145 RNA-binding protein EL 99.4 3.7E-12 7.9E-17 91.8 10.0 81 51-131 37-123 (360)
52 KOG0144 RNA-binding protein CU 99.4 1.5E-12 3.2E-17 99.3 8.3 84 49-132 28-120 (510)
53 KOG0110 RNA-binding protein (R 99.4 6.4E-13 1.4E-17 106.4 6.2 115 1-133 577-697 (725)
54 KOG0109 RNA-binding protein LA 99.4 8.4E-13 1.8E-17 96.2 6.0 72 56-129 3-74 (346)
55 COG0724 RNA-binding proteins ( 99.4 4.4E-12 9.6E-17 92.8 9.4 74 55-128 115-194 (306)
56 KOG0108 mRNA cleavage and poly 99.4 3.5E-12 7.6E-17 99.5 9.0 78 56-133 19-102 (435)
57 smart00360 RRM RNA recognition 99.3 9.4E-12 2E-16 72.9 7.7 64 60-123 1-70 (71)
58 KOG4206 Spliceosomal protein s 99.3 6.3E-12 1.4E-16 88.7 8.0 79 54-132 8-93 (221)
59 KOG0126 Predicted RNA-binding 99.3 1.8E-13 4E-18 93.5 -0.1 77 52-128 32-114 (219)
60 KOG0147 Transcriptional coacti 99.3 2.3E-12 5E-17 100.7 5.7 115 3-130 239-359 (549)
61 KOG0124 Polypyrimidine tract-b 99.3 2.7E-12 5.9E-17 96.3 4.9 80 55-136 113-198 (544)
62 KOG0132 RNA polymerase II C-te 99.2 4.3E-11 9.3E-16 97.0 8.0 79 55-133 421-499 (894)
63 KOG4206 Spliceosomal protein s 99.2 3.3E-10 7.1E-15 80.1 9.3 127 1-127 69-220 (221)
64 KOG0146 RNA-binding protein ET 99.2 7.2E-11 1.6E-15 85.5 5.9 82 54-135 18-107 (371)
65 KOG4212 RNA-binding protein hn 99.1 4.5E-10 9.7E-15 86.3 10.2 76 53-128 42-123 (608)
66 smart00361 RRM_1 RNA recogniti 99.1 2.8E-10 6E-15 67.8 7.0 55 69-123 2-69 (70)
67 KOG0146 RNA-binding protein ET 99.1 6.3E-11 1.4E-15 85.8 4.8 81 51-131 281-367 (371)
68 KOG0415 Predicted peptidyl pro 99.1 1.2E-10 2.6E-15 87.2 6.1 79 52-130 236-320 (479)
69 KOG1190 Polypyrimidine tract-b 99.1 1.5E-09 3.3E-14 82.7 10.0 128 1-128 352-490 (492)
70 KOG4660 Protein Mei2, essentia 99.0 2.9E-10 6.2E-15 89.3 5.3 76 47-122 67-143 (549)
71 KOG0123 Polyadenylate-binding 99.0 2.4E-10 5.3E-15 88.2 4.8 125 1-134 225-354 (369)
72 KOG4212 RNA-binding protein hn 99.0 1.4E-09 3E-14 83.6 8.1 76 51-126 532-608 (608)
73 KOG0110 RNA-binding protein (R 99.0 2.6E-09 5.5E-14 86.1 8.9 73 56-128 516-597 (725)
74 KOG4208 Nucleolar RNA-binding 99.0 4.1E-09 8.9E-14 73.7 8.0 80 50-129 44-130 (214)
75 KOG0106 Alternative splicing f 98.9 2.7E-09 5.8E-14 76.0 6.7 117 1-126 52-168 (216)
76 KOG0533 RRM motif-containing p 98.9 6.9E-09 1.5E-13 75.3 8.7 85 51-135 79-168 (243)
77 KOG4205 RNA-binding protein mu 98.9 2.5E-09 5.4E-14 80.4 6.6 81 54-135 96-182 (311)
78 KOG0151 Predicted splicing reg 98.9 9.1E-09 2E-13 83.1 8.4 80 50-129 169-257 (877)
79 KOG4661 Hsp27-ERE-TATA-binding 98.9 7.5E-09 1.6E-13 82.0 7.0 78 53-130 403-486 (940)
80 KOG1457 RNA binding protein (c 98.8 4.8E-08 1E-12 69.3 9.3 78 53-130 32-119 (284)
81 KOG0105 Alternative splicing f 98.8 1.6E-07 3.6E-12 64.9 11.1 112 3-116 64-175 (241)
82 KOG0106 Alternative splicing f 98.7 1.4E-08 3E-13 72.4 4.4 72 56-129 2-73 (216)
83 KOG4205 RNA-binding protein mu 98.7 1.5E-08 3.2E-13 76.2 4.6 79 54-133 5-89 (311)
84 KOG1548 Transcription elongati 98.6 3.2E-07 7E-12 68.8 9.3 81 48-128 127-220 (382)
85 KOG4454 RNA binding protein (R 98.6 3.3E-08 7.1E-13 69.9 2.2 77 53-129 7-87 (267)
86 KOG0116 RasGAP SH3 binding pro 98.6 5.2E-07 1.1E-11 70.5 9.0 76 54-130 287-368 (419)
87 KOG0226 RNA-binding proteins [ 98.6 1.7E-07 3.6E-12 67.7 5.7 78 51-128 186-269 (290)
88 KOG0120 Splicing factor U2AF, 98.5 3.3E-07 7.1E-12 72.6 7.6 125 1-128 348-491 (500)
89 PF04059 RRM_2: RNA recognitio 98.5 1E-06 2.2E-11 55.4 8.1 72 56-127 2-85 (97)
90 KOG1190 Polypyrimidine tract-b 98.5 6.4E-07 1.4E-11 68.6 7.9 74 55-128 297-372 (492)
91 KOG1548 Transcription elongati 98.5 1.7E-06 3.7E-11 65.0 9.1 126 2-127 201-350 (382)
92 KOG4209 Splicing factor RNPS1, 98.4 5.2E-07 1.1E-11 65.6 6.1 78 51-129 97-180 (231)
93 PF11608 Limkain-b1: Limkain b 98.4 2.2E-06 4.7E-11 51.9 7.4 70 56-129 3-77 (90)
94 KOG0120 Splicing factor U2AF, 98.3 2.1E-06 4.6E-11 68.1 6.7 78 53-130 287-370 (500)
95 COG5175 MOT2 Transcriptional r 98.2 2.9E-06 6.4E-11 63.8 6.2 75 55-129 114-203 (480)
96 KOG1456 Heterogeneous nuclear 98.2 3.7E-05 8.1E-10 58.6 11.8 78 52-129 284-363 (494)
97 KOG1457 RNA binding protein (c 98.2 1.6E-06 3.5E-11 61.7 3.9 62 55-116 210-273 (284)
98 PF08777 RRM_3: RNA binding mo 98.2 4.8E-06 1E-10 53.3 5.7 69 56-124 2-75 (105)
99 KOG0147 Transcriptional coacti 98.1 7E-06 1.5E-10 65.0 6.1 57 71-127 469-526 (549)
100 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.9E-05 4E-10 44.2 5.2 52 56-108 2-53 (53)
101 KOG4211 Splicing factor hnRNP- 98.0 5.9E-05 1.3E-09 59.3 8.9 74 53-128 8-85 (510)
102 PF05172 Nup35_RRM: Nup53/35/4 97.9 0.00011 2.4E-09 46.5 7.1 73 54-128 5-91 (100)
103 KOG0112 Large RNA-binding prot 97.9 4.1E-05 9E-10 64.0 6.5 80 51-130 451-532 (975)
104 KOG4211 Splicing factor hnRNP- 97.8 0.00013 2.8E-09 57.4 8.6 74 53-127 101-180 (510)
105 KOG1995 Conserved Zn-finger pr 97.7 9.6E-05 2.1E-09 56.0 5.6 80 52-131 63-156 (351)
106 KOG2202 U2 snRNP splicing fact 97.6 2.7E-05 5.8E-10 56.5 1.8 57 72-128 85-147 (260)
107 KOG3152 TBP-binding protein, a 97.6 3.3E-05 7.2E-10 56.0 2.1 67 54-120 73-157 (278)
108 KOG1456 Heterogeneous nuclear 97.6 0.00068 1.5E-08 52.0 9.1 77 54-130 119-200 (494)
109 KOG0115 RNA-binding protein p5 97.5 0.00014 3E-09 52.9 4.2 76 3-112 13-93 (275)
110 KOG4210 Nuclear localization s 97.4 0.00011 2.3E-09 55.2 2.9 79 54-133 183-268 (285)
111 KOG2193 IGF-II mRNA-binding pr 97.4 0.00016 3.4E-09 56.2 3.8 75 56-130 2-77 (584)
112 KOG4307 RNA binding protein RB 97.4 0.00092 2E-08 55.0 8.1 70 56-125 868-943 (944)
113 KOG0129 Predicted RNA-binding 97.4 0.0008 1.7E-08 53.4 7.3 58 53-111 257-326 (520)
114 KOG2416 Acinus (induces apopto 97.4 0.00021 4.7E-09 57.5 4.1 79 51-129 440-522 (718)
115 KOG1855 Predicted RNA-binding 97.3 0.0003 6.6E-09 54.6 4.0 65 50-114 226-309 (484)
116 KOG1365 RNA-binding protein Fu 97.2 0.0012 2.6E-08 50.8 6.3 98 53-150 278-389 (508)
117 KOG4849 mRNA cleavage factor I 97.2 0.00026 5.6E-09 53.8 2.7 70 54-123 79-156 (498)
118 KOG0129 Predicted RNA-binding 97.2 0.0019 4.1E-08 51.4 7.3 58 53-110 368-432 (520)
119 KOG2135 Proteins containing th 97.1 0.0004 8.6E-09 54.6 3.3 77 53-130 370-447 (526)
120 KOG1996 mRNA splicing factor [ 97.1 0.0019 4E-08 48.1 6.2 58 70-127 301-365 (378)
121 PF15023 DUF4523: Protein of u 97.0 0.0073 1.6E-07 40.5 7.7 78 49-128 80-161 (166)
122 KOG2314 Translation initiation 96.9 0.0014 3.1E-08 52.7 4.4 73 53-125 56-140 (698)
123 PF04847 Calcipressin: Calcipr 96.8 0.0066 1.4E-07 42.8 6.8 64 68-131 8-73 (184)
124 PF08952 DUF1866: Domain of un 96.8 0.012 2.6E-07 39.7 7.6 78 53-133 25-111 (146)
125 PF08675 RNA_bind: RNA binding 96.7 0.019 4.1E-07 35.0 7.3 57 53-112 7-63 (87)
126 PF10309 DUF2414: Protein of u 96.6 0.025 5.5E-07 32.5 6.9 56 54-111 4-62 (62)
127 KOG2068 MOT2 transcription fac 96.4 0.0011 2.4E-08 50.0 0.5 76 55-130 77-164 (327)
128 KOG4676 Splicing factor, argin 96.2 0.012 2.6E-07 45.5 5.3 72 57-129 9-90 (479)
129 KOG0128 RNA-binding protein SA 96.2 0.00019 4.2E-09 59.8 -4.6 65 54-118 666-736 (881)
130 KOG0112 Large RNA-binding prot 95.9 0.0017 3.8E-08 54.7 -0.4 78 51-128 368-450 (975)
131 KOG4285 Mitotic phosphoprotein 95.7 0.094 2E-06 39.4 8.0 70 55-126 197-267 (350)
132 KOG4574 RNA-binding protein (c 95.7 0.0086 1.9E-07 50.5 2.9 78 58-135 301-380 (1007)
133 KOG4307 RNA binding protein RB 95.4 0.05 1.1E-06 45.3 6.0 80 50-129 429-514 (944)
134 PF07576 BRAP2: BRCA1-associat 95.2 0.39 8.4E-06 31.0 8.7 63 56-118 13-81 (110)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.031 6.7E-07 39.1 3.8 75 53-127 5-96 (176)
136 KOG2193 IGF-II mRNA-binding pr 95.1 0.0004 8.6E-09 54.0 -6.2 76 55-130 80-158 (584)
137 COG0724 RNA-binding proteins ( 94.3 0.12 2.5E-06 37.3 5.3 85 2-90 175-260 (306)
138 KOG1365 RNA-binding protein Fu 94.3 0.48 1E-05 37.0 8.5 67 55-122 161-236 (508)
139 KOG0128 RNA-binding protein SA 94.2 0.026 5.6E-07 47.7 1.6 75 54-128 735-814 (881)
140 KOG2253 U1 snRNP complex, subu 94.1 0.05 1.1E-06 44.8 3.1 71 52-125 37-107 (668)
141 PF11767 SET_assoc: Histone ly 93.9 0.52 1.1E-05 27.4 6.3 55 66-123 11-65 (66)
142 PF03880 DbpA: DbpA RNA bindin 93.3 0.73 1.6E-05 27.3 6.5 67 57-126 2-74 (74)
143 KOG2591 c-Mpl binding protein, 92.9 0.26 5.6E-06 40.1 5.2 71 52-123 172-246 (684)
144 PF13893 RRM_5: RNA recognitio 92.2 0.053 1.1E-06 30.1 0.4 18 2-19 39-56 (56)
145 KOG0804 Cytoplasmic Zn-finger 91.8 0.71 1.5E-05 36.7 6.2 66 53-118 72-142 (493)
146 KOG4660 Protein Mei2, essentia 91.3 0.53 1.1E-05 38.3 5.3 49 79-127 413-471 (549)
147 PLN03134 glycine-rich RNA-bind 91.0 0.62 1.3E-05 31.4 4.7 24 2-25 94-117 (144)
148 KOG2318 Uncharacterized conser 91.0 1.8 3.9E-05 35.6 7.9 76 52-127 171-306 (650)
149 KOG0111 Cyclophilin-type pepti 89.9 0.18 3.9E-06 36.4 1.4 25 1-25 69-93 (298)
150 KOG4019 Calcineurin-mediated s 86.8 0.85 1.8E-05 31.9 3.1 74 56-129 11-90 (193)
151 KOG4410 5-formyltetrahydrofola 86.0 3.5 7.6E-05 31.1 6.1 48 54-101 329-377 (396)
152 KOG4207 Predicted splicing fac 85.8 0.31 6.8E-06 34.9 0.6 24 1-24 72-95 (256)
153 KOG4210 Nuclear localization s 85.5 0.59 1.3E-05 35.3 1.9 76 53-128 86-167 (285)
154 KOG4676 Splicing factor, argin 77.3 0.25 5.5E-06 38.5 -2.5 73 55-128 151-225 (479)
155 KOG4483 Uncharacterized conser 77.0 8.3 0.00018 30.6 5.5 56 54-110 390-446 (528)
156 KOG0108 mRNA cleavage and poly 74.8 2.8 6.1E-05 33.6 2.6 25 1-25 77-101 (435)
157 PF10567 Nab6_mRNP_bdg: RNA-re 73.3 12 0.00026 28.4 5.4 76 52-127 12-106 (309)
158 PF03439 Spt5-NGN: Early trans 61.0 28 0.00061 21.0 4.5 34 81-114 33-67 (84)
159 KOG4454 RNA binding protein (R 59.9 2 4.2E-05 31.2 -0.9 61 55-115 80-149 (267)
160 KOG0126 Predicted RNA-binding 52.8 12 0.00026 26.5 2.0 24 2-25 95-118 (219)
161 PLN03213 repressor of silencin 51.7 5.9 0.00013 32.3 0.5 22 1-22 67-88 (759)
162 PF07292 NID: Nmi/IFP 35 domai 50.7 11 0.00024 23.3 1.4 25 53-77 50-74 (88)
163 PF15513 DUF4651: Domain of un 50.2 22 0.00048 20.4 2.5 19 70-88 9-27 (62)
164 KOG0107 Alternative splicing f 49.3 11 0.00023 26.6 1.3 23 2-24 65-87 (195)
165 PF03468 XS: XS domain; Inter 49.0 26 0.00056 22.7 3.1 42 67-108 29-74 (116)
166 KOG1295 Nonsense-mediated deca 48.4 28 0.00061 27.4 3.6 63 54-116 6-77 (376)
167 KOG0125 Ataxin 2-binding prote 48.1 9.3 0.0002 29.5 1.0 23 2-24 154-176 (376)
168 PF00403 HMA: Heavy-metal-asso 41.9 60 0.0013 17.7 6.1 54 57-110 1-58 (62)
169 PF02714 DUF221: Domain of unk 41.0 35 0.00077 25.9 3.3 35 94-130 1-35 (325)
170 PF13689 DUF4154: Domain of un 38.4 1E+02 0.0022 20.5 4.9 19 2-20 43-61 (145)
171 PF12829 Mhr1: Transcriptional 36.3 96 0.0021 19.3 4.0 49 63-111 20-71 (91)
172 KOG2891 Surface glycoprotein [ 34.8 60 0.0013 24.7 3.5 23 67-89 173-195 (445)
173 KOG0156 Cytochrome P450 CYP2 s 34.6 99 0.0021 25.4 5.0 58 60-121 37-97 (489)
174 KOG4008 rRNA processing protei 32.8 42 0.0009 24.8 2.3 36 51-86 36-71 (261)
175 PF11823 DUF3343: Protein of u 31.4 82 0.0018 18.2 3.1 27 92-118 2-28 (73)
176 PF09707 Cas_Cas2CT1978: CRISP 28.8 1.3E+02 0.0028 18.5 3.7 44 55-98 25-71 (86)
177 PRK10629 EnvZ/OmpR regulon mod 28.8 1.8E+02 0.0038 19.2 8.0 72 54-127 34-109 (127)
178 COG0150 PurM Phosphoribosylami 28.1 16 0.00035 28.4 -0.4 45 70-114 276-322 (345)
179 KOG2295 C2H2 Zn-finger protein 26.6 13 0.00029 30.7 -1.1 66 53-118 229-300 (648)
180 COG5638 Uncharacterized conser 26.1 1.2E+02 0.0026 24.5 3.9 38 52-89 143-185 (622)
181 PF11411 DNA_ligase_IV: DNA li 25.4 54 0.0012 16.6 1.3 15 66-80 20-34 (36)
182 PF13046 DUF3906: Protein of u 25.3 1.1E+02 0.0024 17.6 2.7 29 68-96 31-63 (64)
183 PRK08559 nusG transcription an 24.7 2.3E+02 0.0049 19.2 5.5 33 82-114 36-69 (153)
184 KOG4213 RNA-binding protein La 23.4 1.7E+02 0.0036 20.8 3.8 44 67-110 118-169 (205)
185 PHA01632 hypothetical protein 23.2 89 0.0019 17.5 2.0 21 58-78 19-39 (64)
186 PRK11558 putative ssRNA endonu 22.6 1.7E+02 0.0036 18.5 3.4 46 55-100 27-75 (97)
187 PF07530 PRE_C2HC: Associated 22.5 1.7E+02 0.0037 16.9 4.0 57 70-129 2-65 (68)
188 PRK14548 50S ribosomal protein 22.1 2E+02 0.0043 17.5 4.8 49 62-110 27-80 (84)
189 PRK10905 cell division protein 21.8 2.9E+02 0.0063 21.5 5.2 63 52-118 244-313 (328)
190 cd00027 BRCT Breast Cancer Sup 21.2 1.5E+02 0.0032 15.7 3.0 45 56-102 2-46 (72)
191 PRK11901 hypothetical protein; 20.3 3.8E+02 0.0082 20.9 5.5 63 53-119 243-312 (327)
No 1
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.3e-21 Score=140.33 Aligned_cols=118 Identities=24% Similarity=0.346 Sum_probs=99.7
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
|.+|||.-|++|.||-+||..++... ++.+ ..-..-.....+..++||+||++..++|+.|++.|++||
T Consensus 121 I~~MnGqWlG~R~IRTNWATRKp~e~--n~~~---------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 121 IQQMNGQWLGRRTIRTNWATRKPSEM--NGKP---------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred HHHhCCeeeccceeeccccccCcccc--CCCC---------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 46899999999999999999886321 1100 000011223457889999999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 81 EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 81 ~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
.|.+|++..++||+||.|.+.|.|.+||..+|+.++.|+.++|.|++..
T Consensus 190 ~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 190 PIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred cceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 9999999999999999999999999999999999999999999999864
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=4.8e-19 Score=142.31 Aligned_cols=117 Identities=21% Similarity=0.354 Sum_probs=93.3
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
|++|||..|+||+|+|.++........ .............+|||+||+.++++++|+++|+.||
T Consensus 166 i~~lnG~~i~GR~IkV~rp~~~p~a~~----------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG 229 (612)
T TIGR01645 166 LEQMNGQMLGGRNIKVGRPSNMPQAQP----------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 229 (612)
T ss_pred HHhcCCeEEecceeeeccccccccccc----------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcC
Confidence 357999999999999986443211100 0000111223457999999999999999999999999
Q ss_pred CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCch
Q 031682 81 EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQ 133 (155)
Q Consensus 81 ~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~ 133 (155)
.|.++.+..+ +|||||+|.+.++|..|+..||+..++|+.|+|.++.+++...
T Consensus 230 ~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 230 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred CeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 9999999764 7999999999999999999999999999999999998765443
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=7.9e-19 Score=133.97 Aligned_cols=102 Identities=23% Similarity=0.434 Sum_probs=89.3
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
|++|||..|.+++|+|.++.+.... ...++|||+|||..+++++|+++|++||
T Consensus 166 i~~LnG~~l~gr~i~V~~a~p~~~~---------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG 218 (346)
T TIGR01659 166 IKNLNGITVRNKRLKVSYARPGGES---------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG 218 (346)
T ss_pred HHHcCCCccCCceeeeecccccccc---------------------------cccceeEEeCCCCcccHHHHHHHHHhcC
Confidence 3579999999999999998754211 2356899999999999999999999999
Q ss_pred CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEeecC
Q 031682 81 EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGK--FMMVMGMLFRH 129 (155)
Q Consensus 81 ~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~~ 129 (155)
.|..+.++.+ +|+|||+|.+.++|++|++.|++..+.+ ++|+|.|+...
T Consensus 219 ~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 219 QIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 9999998866 5899999999999999999999998865 78999999865
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=2.8e-18 Score=131.54 Aligned_cols=76 Identities=29% Similarity=0.396 Sum_probs=71.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
+.+|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|.+.++|..|+..|+|..++|++|+|.|..+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 447999999999999999999999999999999865 79999999999999999999999999999999999987
Q ss_pred CC
Q 031682 129 HQ 130 (155)
Q Consensus 129 ~~ 130 (155)
+.
T Consensus 349 ~~ 350 (352)
T TIGR01661 349 KA 350 (352)
T ss_pred CC
Confidence 64
No 5
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=1.1e-17 Score=113.23 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=73.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+|.+.++|+.|++.|++..++|++|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 55778999999999999999999999999999999754 799999999999999999999999999999999999
Q ss_pred ecCCC
Q 031682 127 FRHQM 131 (155)
Q Consensus 127 ~~~~~ 131 (155)
.+++.
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 87653
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=1.1e-16 Score=128.39 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=86.7
Q ss_pred eeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhccc--CCeeE
Q 031682 7 VYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIAS 84 (155)
Q Consensus 7 ~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~ 84 (155)
..++|+.|+|+|+.+..... ........+|||+||++.+++++|+++|++| |.|.+
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d----------------------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~r 264 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVD----------------------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVER 264 (578)
T ss_pred eEecCceEEEEeeccccccc----------------------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 56899999999998764331 1112345789999999999999999999999 99999
Q ss_pred EEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 85 VKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 85 ~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
+.++ ++||||+|.+.++|++|++.|++..|+|+.|+|.|+++..
T Consensus 265 V~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 265 VKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred EEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 9877 5699999999999999999999999999999999998754
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=3.3e-16 Score=120.12 Aligned_cols=103 Identities=22% Similarity=0.401 Sum_probs=89.2
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
|+.|||..|.|++|+|.|+.+.... ....+|||+|||..+++++|+.+|++||
T Consensus 62 i~~l~g~~l~g~~i~v~~a~~~~~~---------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G 114 (352)
T TIGR01661 62 VNSLNGLRLQNKTIKVSYARPSSDS---------------------------IKGANLYVSGLPKTMTQHELESIFSPFG 114 (352)
T ss_pred HhhcccEEECCeeEEEEeecccccc---------------------------cccceEEECCccccCCHHHHHHHHhccC
Confidence 4579999999999999998765322 2356899999999999999999999999
Q ss_pred CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEeecCC
Q 031682 81 EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGK--FMMVMGMLFRHQ 130 (155)
Q Consensus 81 ~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~~~ 130 (155)
.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.| .+|.|.|+....
T Consensus 115 ~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 115 QIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999988653 7899999999999999999999998877 678999987543
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.69 E-value=4.5e-16 Score=124.04 Aligned_cols=129 Identities=16% Similarity=0.300 Sum_probs=92.5
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccC--C---CCCCCC---C--CCCCCCCCCCCCCcCeEEEcCCCCCCCHH
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSS--Q---GGYASN---G--APGQGPQSEGDSSNTTIFVGGLDPNVTDE 70 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~--~---~~~~~~---~--~~~~~~~~~~~~~~~~l~v~~l~~~~~~~ 70 (155)
|..|||..|.|++|+|.+++.......+..... . ..+... + ...........+++.+|||+|||..++++
T Consensus 330 i~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee 409 (481)
T TIGR01649 330 LTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEE 409 (481)
T ss_pred HHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHH
Confidence 357999999999999999876532211110000 0 000000 0 00000011123567899999999999999
Q ss_pred HHHHHhcccCC--eeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeE------EEEEEeecC
Q 031682 71 DLRQPFSQYGE--IASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFM------MVMGMLFRH 129 (155)
Q Consensus 71 ~l~~~f~~~g~--i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~------l~v~~~~~~ 129 (155)
+|+++|+.||. +..+++... +++|||+|.+.++|..|+..|++..++++. |+|+|++++
T Consensus 410 ~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 410 DLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 99999999997 888887544 599999999999999999999999999885 999999864
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.69 E-value=1.8e-16 Score=128.53 Aligned_cols=122 Identities=27% Similarity=0.391 Sum_probs=95.5
Q ss_pred CccCCeeeC----CeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhc
Q 031682 2 TEMNGVYCS----SRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFS 77 (155)
Q Consensus 2 ~~mnG~~l~----gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 77 (155)
+.|||..+. |+.+.|.++..+..+.......... ............+|||+||++.+++++|+++|+
T Consensus 237 ~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~---------~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~ 307 (562)
T TIGR01628 237 EEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEE---------LQQERKMKAQGVNLYVKNLDDTVTDEKLRELFS 307 (562)
T ss_pred HHhCCcEecccccceeeEeecccChhhhHHHHHhhHHh---------hhhhhhcccCCCEEEEeCCCCccCHHHHHHHHH
Confidence 568999999 9999999987765431100000000 000011234567899999999999999999999
Q ss_pred ccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCc
Q 031682 78 QYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMT 132 (155)
Q Consensus 78 ~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 132 (155)
+||.|.++.+..+ +|||||+|.+.++|.+|+..|+|..++|++|+|.|+.++...
T Consensus 308 ~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 308 ECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred hcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 9999999998765 699999999999999999999999999999999999876533
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.68 E-value=1.8e-15 Score=121.27 Aligned_cols=127 Identities=13% Similarity=0.162 Sum_probs=90.7
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCC-CCC-CCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASN-GAP-GQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
+|||..|.|++|+|........................ ... .............+|||+|||..+++++|+++|..||
T Consensus 241 ~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 241 ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 58999999999999866543311100000000000000 000 0001111223567999999999999999999999999
Q ss_pred CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 81 EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 81 ~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
.|..+.++.+ +|||||+|.+.++|..|+..|+|..+.|+.|.|.++...
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999988653 799999999999999999999999999999999998643
No 11
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.6e-16 Score=121.04 Aligned_cols=101 Identities=18% Similarity=0.274 Sum_probs=90.8
Q ss_pred CeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEE
Q 031682 6 GVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (155)
Q Consensus 6 G~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~ 85 (155)
.+.|+|..+.|.||.+..... .........|||.||+.++|++.|++.|..||.|+++
T Consensus 232 ~~klwgn~~tVdWAep~~e~d----------------------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRV 289 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPD----------------------EDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERV 289 (506)
T ss_pred ceeecCCcceeeccCcccCCC----------------------hhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEe
Confidence 467899999999999986653 2234567789999999999999999999999999999
Q ss_pred EEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 86 KIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 86 ~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
+.++| ||||+|..+++|.+|++.++|..|+|..|.|.+++|..
T Consensus 290 kk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 290 KKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred ecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 88866 99999999999999999999999999999999999864
No 12
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.3e-16 Score=114.38 Aligned_cols=103 Identities=23% Similarity=0.467 Sum_probs=91.5
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
|..|||..|..+.|+|.||+|.... .....|||++||..++..+|+.+|++||
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~~---------------------------Ik~aNLYvSGlPktMtqkelE~iFs~fG 152 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSDS---------------------------IKDANLYVSGLPKTMTQKELEQIFSPFG 152 (360)
T ss_pred HhhhcceeeccceEEEEeccCChhh---------------------------hcccceEEecCCccchHHHHHHHHHHhh
Confidence 4579999999999999999987543 5678899999999999999999999999
Q ss_pred CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEeecCC
Q 031682 81 EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGK--FMMVMGMLFRHQ 130 (155)
Q Consensus 81 ~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~~~ 130 (155)
.|...++..+ ||++||.|+.+.+|+.||..|+|....| -+|.|.|+...+
T Consensus 153 rIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 153 RIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred hhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 9888777654 8999999999999999999999998776 479999998553
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.67 E-value=1.2e-15 Score=120.94 Aligned_cols=111 Identities=23% Similarity=0.358 Sum_probs=89.5
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 82 (155)
+|+|..|.|++|.|.++........... .......+...+|||+|||..+++++|+++|+.||.|
T Consensus 149 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~---------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i 213 (457)
T TIGR01622 149 ALTGQMLLGRPIIVQSSQAEKNRAAKAA---------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDI 213 (457)
T ss_pred HhCCCEECCeeeEEeecchhhhhhhhcc---------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe
Confidence 4899999999999998765432210000 0000112337899999999999999999999999999
Q ss_pred eEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 83 ASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 83 ~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|+..
T Consensus 214 ~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 214 EDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 99998753 69999999999999999999999999999999999764
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.67 E-value=1.1e-15 Score=116.77 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=73.9
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
......++|||++||+++++++|+++|+.||.|.+|+|+.+ +|||||+|.+.++|++|+..|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34567889999999999999999999999999999999765 599999999999999999999999999999999
Q ss_pred EEeecC
Q 031682 124 GMLFRH 129 (155)
Q Consensus 124 ~~~~~~ 129 (155)
.|+.+.
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998764
No 15
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.6e-16 Score=101.67 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=71.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
...+++||||||+..++|+.|.++|+.+|+|..|.+..+ .|||||+|.+.++|+.|+..++|..++.++|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 357899999999999999999999999999999998876 59999999999999999999999999999999998
Q ss_pred ee
Q 031682 126 LF 127 (155)
Q Consensus 126 ~~ 127 (155)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 65
No 16
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=8.1e-16 Score=91.25 Aligned_cols=65 Identities=34% Similarity=0.559 Sum_probs=61.7
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 58 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
|||+|||.++++.+|+++|++||.+..+.+..+ +++|||+|.+.++|+.|+..++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988773 79999999999999999999999999999885
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=9.4e-16 Score=110.42 Aligned_cols=79 Identities=29% Similarity=0.519 Sum_probs=74.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
......+||+.|..+++-++|++.|.+||+|.++++++| |||+||.|.+.++|++||..|+|.+|++|.|+-.|
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNW 138 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNW 138 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccc
Confidence 345788999999999999999999999999999999987 89999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+..++
T Consensus 139 ATRKp 143 (321)
T KOG0148|consen 139 ATRKP 143 (321)
T ss_pred cccCc
Confidence 98776
No 18
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.62 E-value=3.1e-15 Score=121.36 Aligned_cols=106 Identities=27% Similarity=0.385 Sum_probs=89.5
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
.+||+..+.|++|+|.|+....... .....+|||+|||.++++++|+++|+.||.
T Consensus 60 ~~ln~~~i~gk~i~i~~s~~~~~~~-------------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~ 114 (562)
T TIGR01628 60 ETMNFKRLGGKPIRIMWSQRDPSLR-------------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGN 114 (562)
T ss_pred HHhCCCEECCeeEEeeccccccccc-------------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCC
Confidence 5689999999999999986542210 122457999999999999999999999999
Q ss_pred eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCc
Q 031682 82 IASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMT 132 (155)
Q Consensus 82 i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 132 (155)
|..|.+..+ +|||||+|.+.++|..|++.++|..+.|+.|.|....++...
T Consensus 115 i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~ 170 (562)
T TIGR01628 115 ILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHER 170 (562)
T ss_pred cceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccccccc
Confidence 999988754 799999999999999999999999999999999876654433
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.62 E-value=1.4e-14 Score=115.61 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=87.7
Q ss_pred cCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCee
Q 031682 4 MNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA 83 (155)
Q Consensus 4 mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~ 83 (155)
+++..|+|++|+|.|+..+........ ............|||+||++.+++++|+++|+.||.|.
T Consensus 60 ~~~~~l~g~~l~v~~s~~~~~~~~~~~---------------~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~ 124 (481)
T TIGR01649 60 SVPIYIRGQPAFFNYSTSQEIKRDGNS---------------DFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL 124 (481)
T ss_pred cCCceEcCeEEEEEecCCcccccCCCC---------------cccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE
Confidence 588999999999999986532210000 00001112345799999999999999999999999999
Q ss_pred EEEEeCCC--CEEEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEeecC
Q 031682 84 SVKIPVGK--GCGFVQFANSLGQIMAINGVGHTMEGK--FMMVMGMLFRH 129 (155)
Q Consensus 84 ~~~~~~~~--g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~~ 129 (155)
++.+.+++ ++|||+|.+.++|.+|+..|+|..+.| +.|+|.|+++.
T Consensus 125 ~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 125 RIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 99987764 599999999999999999999999854 58999999864
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.61 E-value=6.8e-15 Score=106.84 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=68.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.++|||+|||+.+++++|+++|+.||+|.++.++.+ +|||||+|.+.++++.|+. |+|..+.|++|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 579999999999999999999999999999999876 6999999999999999995 999999999999999873
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.61 E-value=9.8e-16 Score=104.51 Aligned_cols=106 Identities=26% Similarity=0.410 Sum_probs=89.8
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
+-||++.|.||+|+|+.+...... ...+..|||+||.+.+++..|.+.|+.||.
T Consensus 69 kiln~VkLYgrpIrv~kas~~~~n--------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~ 122 (203)
T KOG0131|consen 69 KILNMVKLYGRPIRVNKASAHQKN--------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGV 122 (203)
T ss_pred HHHHHHHhcCceeEEEeccccccc--------------------------ccccccccccccCcchhHHHHHHHHHhccc
Confidence 458899999999999999843222 245689999999999999999999999997
Q ss_pred eeEE-EEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCch
Q 031682 82 IASV-KIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQ 133 (155)
Q Consensus 82 i~~~-~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~ 133 (155)
+... .+.++ +|++||.|.+.+.+.+|+..++|..+.++++.|.|+..+..+.
T Consensus 123 l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 123 LISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 7663 33332 7899999999999999999999999999999999998876554
No 22
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=3e-15 Score=110.30 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=72.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
.....+|||+|||+...+.||+.+|++||.|.++.|+.+ |||+||+|++.++|++|-++|||..+.||+|.|..+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 455689999999999999999999999999999999764 8999999999999999999999999999999998886
Q ss_pred cC
Q 031682 128 RH 129 (155)
Q Consensus 128 ~~ 129 (155)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 23
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.8e-15 Score=101.07 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=72.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
...++||||||+..++..+|+..|..||.+..+.|... .|||||+|++..+|+.|+..|+|..|.|..|+|+++.-.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 45789999999999999999999999999999988665 7999999999999999999999999999999999987554
No 24
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=6.4e-15 Score=114.87 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=97.0
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
.+.++..++||.|+|..|.++.................-. ........-+.+..+|.|+|||+.+...+|+.+|+.||.
T Consensus 65 ~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~-q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~ 143 (678)
T KOG0127|consen 65 AETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIE-QKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK 143 (678)
T ss_pred HHhhcCcccceecccccccccccchhcccccchhhhcccc-cCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce
Confidence 3456778999999999999886543111100000000000 000011111334789999999999999999999999999
Q ss_pred eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCch
Q 031682 82 IASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQ 133 (155)
Q Consensus 82 i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~ 133 (155)
|.++.|++. +|||||.|....+|..|++.+++..++||+|-|+|+-++..-.
T Consensus 144 V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 144 VVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred EEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 999999864 6999999999999999999999999999999999999875443
No 25
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.5e-14 Score=101.73 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=73.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|-|.||+.++++.+|+++|.+||.|.++.+.++ ||||||+|.++++|.+||..|+|.-+++--|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 46778999999999999999999999999999999876 799999999999999999999999999999999999
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
+|+.
T Consensus 267 kP~~ 270 (270)
T KOG0122|consen 267 KPSN 270 (270)
T ss_pred CCCC
Confidence 9863
No 26
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=3.9e-14 Score=88.41 Aligned_cols=77 Identities=18% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
.....|||.|||+.++.++..++|.+||.|..|++... +|.|||.|++..+|.+|++.|.|..+.++.+.|-|-.+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 56788999999999999999999999999999999654 899999999999999999999999999999999887754
No 27
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=3.4e-14 Score=84.56 Aligned_cols=65 Identities=25% Similarity=0.461 Sum_probs=59.5
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 58 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
|||+|||+.+++++|.++|+.||.|..+.+..+ +++|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999998876 69999999999999999999999999999875
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.2e-15 Score=114.15 Aligned_cols=118 Identities=22% Similarity=0.389 Sum_probs=92.8
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
++.|||.+|+||.|+|.....-+.. + +--+....+-....+|||..+++++++++|+..|+.||
T Consensus 172 lEqMNg~mlGGRNiKVgrPsNmpQA--Q--------------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG 235 (544)
T KOG0124|consen 172 LEQMNGQMLGGRNIKVGRPSNMPQA--Q--------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG 235 (544)
T ss_pred HHHhccccccCccccccCCCCCccc--c--------------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc
Confidence 3689999999999999843322111 0 00000111234567899999999999999999999999
Q ss_pred CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCchh
Q 031682 81 EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQA 134 (155)
Q Consensus 81 ~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~ 134 (155)
+|..|.+-++ +||+|++|.+..+...|+..||=+.++|+-|+|.-+...+....
T Consensus 236 ~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl 295 (544)
T KOG0124|consen 236 EIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALL 295 (544)
T ss_pred ceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhc
Confidence 9999999764 89999999999999999999999999999999988876655543
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.54 E-value=2.5e-14 Score=104.09 Aligned_cols=99 Identities=22% Similarity=0.405 Sum_probs=90.0
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
|+-|+|-.|+|..|+|+.++.+. ....+|+|+|+.+..+..+|+..|++||
T Consensus 53 irNLhgYtLhg~nInVeaSksKs-----------------------------k~stkl~vgNis~tctn~ElRa~fe~yg 103 (346)
T KOG0109|consen 53 IRNLHGYTLHGVNINVEASKSKS-----------------------------KASTKLHVGNISPTCTNQELRAKFEKYG 103 (346)
T ss_pred HhhcccceecceEEEEEeccccC-----------------------------CCccccccCCCCccccCHHHhhhhcccC
Confidence 34589999999999999988763 3468899999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 81 EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 81 ~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
.+.+|.|+ ++|+||+|.-.++|..|++.|++.++.|+++.|..+.++-
T Consensus 104 pviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 104 PVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred Cceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 99999999 5599999999999999999999999999999999887653
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=3.3e-14 Score=109.43 Aligned_cols=102 Identities=26% Similarity=0.403 Sum_probs=91.2
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
|.+||...|.|++|||.|....... +||-||+++++..+|.++|+.||
T Consensus 54 ~~~~n~~~~~~~~~rim~s~rd~~~--------------------------------~~i~nl~~~~~~~~~~d~f~~~g 101 (369)
T KOG0123|consen 54 LDTMNFDVLKGKPIRIMWSQRDPSL--------------------------------VFIKNLDESIDNKSLYDTFSEFG 101 (369)
T ss_pred HHHcCCcccCCcEEEeehhccCCce--------------------------------eeecCCCcccCcHHHHHHHHhhc
Confidence 4689999999999999999865311 99999999999999999999999
Q ss_pred CeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCchhh
Q 031682 81 EIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQAC 135 (155)
Q Consensus 81 ~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~ 135 (155)
.|.+|++..+ +|| ||+|.++++|.+|+..++|..+.|++|.|....++..+.+.
T Consensus 102 ~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~ 159 (369)
T KOG0123|consen 102 NILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAP 159 (369)
T ss_pred CeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhccc
Confidence 9999999775 789 99999999999999999999999999999888876655443
No 31
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=1.5e-13 Score=110.19 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=87.7
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCC-CCCCCCCCCCCCCCCCcCeEEEcCCCCC---C-------CH
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYA-SNGAPGQGPQSEGDSSNTTIFVGGLDPN---V-------TD 69 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~~l~~~---~-------~~ 69 (155)
|..|||..|+|+.|+|.++................... ...............+..+|+|.|+... + ..
T Consensus 354 ~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~ 433 (509)
T TIGR01642 354 IAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIY 433 (509)
T ss_pred HHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHH
Confidence 35799999999999999987653321111100000000 0000000011112345678999999642 1 12
Q ss_pred HHHHHHhcccCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 70 EDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 70 ~~l~~~f~~~g~i~~~~~~~~---------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
++|++.|++||.|..|.|+.. +|++||+|.+.++|..|+..|+|..|+|+.|.|.|...
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 578999999999999998753 58999999999999999999999999999999999754
No 32
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=2.7e-14 Score=99.37 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=73.8
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
+++.....+|-|.||.+.++.++|+.+|++||.|-+|.|+.+ +|||||.|....+|+.|++.|+|.+|+|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 555667889999999999999999999999999999999987 79999999999999999999999999999999
Q ss_pred EEEee
Q 031682 123 MGMLF 127 (155)
Q Consensus 123 v~~~~ 127 (155)
|.+++
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 88776
No 33
>PLN03213 repressor of silencing 3; Provisional
Probab=99.53 E-value=4.9e-14 Score=109.14 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=71.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--CCEEEEEeCCH--HHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANS--LGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~g~~fV~f~~~--~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
....+||||||++.+++++|+.+|+.||.|..+.|++. ||||||+|.+. .+..+||..|+|..+.|+.|+|.-+++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34679999999999999999999999999999999875 89999999987 789999999999999999999999987
Q ss_pred C
Q 031682 129 H 129 (155)
Q Consensus 129 ~ 129 (155)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 6
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=5.4e-14 Score=113.46 Aligned_cols=76 Identities=20% Similarity=0.411 Sum_probs=70.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+||++.+++++|+++|.+||.|.++.+..+ +|||||+|.+.++|..|+..|+|..++|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999998754 799999999999999999999999999999999865
Q ss_pred ec
Q 031682 127 FR 128 (155)
Q Consensus 127 ~~ 128 (155)
..
T Consensus 185 ~~ 186 (612)
T TIGR01645 185 SN 186 (612)
T ss_pred cc
Confidence 43
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.52 E-value=5.2e-14 Score=113.24 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccC-CeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEG-KFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~ 125 (155)
....++|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|.+.++|++|++.|++..+. |+.|.|++
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 346799999999999999999999999999999998764 799999999999999999999999874 77777766
Q ss_pred ee
Q 031682 126 LF 127 (155)
Q Consensus 126 ~~ 127 (155)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 54
No 36
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2e-14 Score=109.31 Aligned_cols=85 Identities=25% Similarity=0.410 Sum_probs=75.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCc-ccCC--eEEEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHT-MEGK--FMMVMG 124 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~-~~~g--~~l~v~ 124 (155)
...++||||-|+..++|.+++++|++||.|++|.|.++ |||+||.|.+.+-|..||+.|||. .+.| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 45789999999999999999999999999999999886 899999999999999999999998 4555 689999
Q ss_pred EeecCCCchhhhh
Q 031682 125 MLFRHQMTQACTL 137 (155)
Q Consensus 125 ~~~~~~~~~~~~~ 137 (155)
|+.+...+.....
T Consensus 202 FADtqkdk~~~~l 214 (510)
T KOG0144|consen 202 FADTQKDKDGKRL 214 (510)
T ss_pred ecccCCCchHHHH
Confidence 9998766654433
No 37
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.51 E-value=2.3e-13 Score=77.60 Aligned_cols=55 Identities=27% Similarity=0.341 Sum_probs=51.5
Q ss_pred HHHHhcccCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 72 LRQPFSQYGEIASVKIPVGK-GCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 72 l~~~f~~~g~i~~~~~~~~~-g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
|.++|++||+|.++.+...+ +++||+|.+.++|..|+..|+|..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998887 99999999999999999999999999999999986
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.8e-13 Score=98.16 Aligned_cols=74 Identities=20% Similarity=0.204 Sum_probs=67.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
....+|||+||++.+++.+|+++|+.||+|..|.+.++ +++|||+|.+.++++.|+ .|+|..|.+++|.|....
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 45689999999999999999999999999999999886 589999999999999998 599999999999887643
No 39
>smart00362 RRM_2 RNA recognition motif.
Probab=99.51 E-value=2.4e-13 Score=80.15 Aligned_cols=67 Identities=42% Similarity=0.658 Sum_probs=63.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC----CEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK----GCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 57 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
+|||+|||..+++.+|+++|.+||.+..+.+..+. +++||+|.+.++|..|+..+++..+.|++|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999988765 99999999999999999999999999999886
No 40
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=6.4e-14 Score=99.19 Aligned_cols=75 Identities=31% Similarity=0.430 Sum_probs=65.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
+...++||||+|+|.+..+.|++.|++||+|.+..++.| |||+||+|.+.++|.+|++- ..-.|+||+..|..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 456789999999999999999999999999999988765 79999999999999999873 44578999988876
Q ss_pred ee
Q 031682 126 LF 127 (155)
Q Consensus 126 ~~ 127 (155)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 64
No 41
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.3e-13 Score=97.93 Aligned_cols=81 Identities=17% Similarity=0.333 Sum_probs=74.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
.+.+||||+-|+++++|..|+..|+.||.|..|.++.+ +|||||+|..+.+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56799999999999999999999999999999999886 799999999999999999999999999999999988
Q ss_pred ecCCCch
Q 031682 127 FRHQMTQ 133 (155)
Q Consensus 127 ~~~~~~~ 133 (155)
.-.....
T Consensus 179 RgRTvkg 185 (335)
T KOG0113|consen 179 RGRTVKG 185 (335)
T ss_pred ccccccc
Confidence 7654443
No 42
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=1.2e-13 Score=94.79 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=70.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
...++|||+|||.++.+.+|+++|.+||.|.+|.+... ..||||+|++..+|+.||..-+|..++|++|+|.|+..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999988543 579999999999999999999999999999999998753
No 43
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.5e-13 Score=89.71 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=73.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.+-....|||.++....+++++.+.|..||+|..+.+.++ +||++|+|.+.++|..|+..+||..|.|+.|.|.
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 3456788999999999999999999999999999999876 7999999999999999999999999999999999
Q ss_pred EeecCC
Q 031682 125 MLFRHQ 130 (155)
Q Consensus 125 ~~~~~~ 130 (155)
|+..+.
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 997553
No 44
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5.7e-14 Score=98.75 Aligned_cols=80 Identities=25% Similarity=0.501 Sum_probs=75.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++||||+|..++++..|...|-+||.|..|.++.+ |||+||+|.-.|+|..||..|++.+|-|+.|+|.|+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45789999999999999999999999999999999886 899999999999999999999999999999999999
Q ss_pred ecCCCc
Q 031682 127 FRHQMT 132 (155)
Q Consensus 127 ~~~~~~ 132 (155)
+|....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 986543
No 45
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.5e-13 Score=100.93 Aligned_cols=83 Identities=30% Similarity=0.493 Sum_probs=75.2
Q ss_pred CCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhh-CCcccCCeEEEEEE
Q 031682 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV-GHTMEGKFMMVMGM 125 (155)
Q Consensus 47 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~ 125 (155)
-.++++....+|||++|-..+++.+|+++|.+||+|+.+.+...+++|||+|.+.++|+.|.+.. +-..++|++|+|.|
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 35667788899999999999999999999999999999999999999999999999999999865 44468999999999
Q ss_pred eecC
Q 031682 126 LFRH 129 (155)
Q Consensus 126 ~~~~ 129 (155)
+.+.
T Consensus 300 g~~~ 303 (377)
T KOG0153|consen 300 GRPK 303 (377)
T ss_pred CCCc
Confidence 9984
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=6.4e-13 Score=101.62 Aligned_cols=91 Identities=19% Similarity=0.322 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhC
Q 031682 39 SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVG 112 (155)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~ 112 (155)
..+++++.+..+..+..+.||||.||.++.|++|.-+|++.|+|-++++..+ ||||||.|.+.++|..|++.||
T Consensus 67 k~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~ln 146 (506)
T KOG0117|consen 67 KYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELN 146 (506)
T ss_pred ccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhh
Confidence 3445555566666789999999999999999999999999999999999875 8999999999999999999999
Q ss_pred Cccc-CCeEEEEEEeecC
Q 031682 113 HTME-GKFMMVMGMLFRH 129 (155)
Q Consensus 113 g~~~-~g~~l~v~~~~~~ 129 (155)
+.+| .|+.|.|+.+..+
T Consensus 147 n~Eir~GK~igvc~Svan 164 (506)
T KOG0117|consen 147 NYEIRPGKLLGVCVSVAN 164 (506)
T ss_pred CccccCCCEeEEEEeeec
Confidence 9976 6899999887643
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.3e-12 Score=102.11 Aligned_cols=77 Identities=23% Similarity=0.427 Sum_probs=68.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhh-----CC-cccCCeEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGV-----GH-TMEGKFMM 121 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l-----~g-~~~~g~~l 121 (155)
...+|||+|||++++++.|..+|++||+|..+.++.+ +|.|||.|.+..++..||... .| ..|+||.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 3589999999999999999999999999999988765 799999999999999999875 23 56899999
Q ss_pred EEEEeecCC
Q 031682 122 VMGMLFRHQ 130 (155)
Q Consensus 122 ~v~~~~~~~ 130 (155)
+|..+-++.
T Consensus 371 kv~~Av~Rk 379 (678)
T KOG0127|consen 371 KVTLAVTRK 379 (678)
T ss_pred eeeeccchH
Confidence 999988654
No 48
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.43 E-value=2.9e-12 Score=101.56 Aligned_cols=77 Identities=22% Similarity=0.284 Sum_probs=70.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.....+|||+|||..+++.+|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+. |+|..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 345789999999999999999999999999999999765 7999999999999999996 899999999999988
Q ss_pred eecC
Q 031682 126 LFRH 129 (155)
Q Consensus 126 ~~~~ 129 (155)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7643
No 49
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=4.2e-13 Score=91.72 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=70.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
....+|||+||+..++++.|+++|-+.|+|..+.++++ +||||++|.++++|+.|+..|+...|.|++|+|.-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45789999999999999999999999999999999886 799999999999999999999988999999999888
Q ss_pred e
Q 031682 127 F 127 (155)
Q Consensus 127 ~ 127 (155)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 50
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=3e-12 Score=75.74 Aligned_cols=69 Identities=36% Similarity=0.609 Sum_probs=64.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 57 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
+|+|+|||..+++++|+.+|..||.+..+.+..+ ++++||+|.+.++|..|+..+++..+.|+++.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999988765 68999999999999999999999999999998864
No 51
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=3.7e-12 Score=91.77 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=74.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.+.....|.|.=||..+++++++.+|...|+|++|++++| -||+||.|.+.++|++|+..|+|..+..+.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 3455677888899999999999999999999999999998 4999999999999999999999999999999999
Q ss_pred EeecCCC
Q 031682 125 MLFRHQM 131 (155)
Q Consensus 125 ~~~~~~~ 131 (155)
|++|.+.
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998753
No 52
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.5e-12 Score=99.35 Aligned_cols=84 Identities=23% Similarity=0.389 Sum_probs=73.6
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCc-ccC--Ce
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHT-MEG--KF 119 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~-~~~--g~ 119 (155)
...+....++|||.+|..++|.+|+.+|++||.|.+|.+++| +|||||.|.++++|.+|+..||.. .|- ..
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 334567789999999999999999999999999999999987 799999999999999999999887 454 47
Q ss_pred EEEEEEeecCCCc
Q 031682 120 MMVMGMLFRHQMT 132 (155)
Q Consensus 120 ~l~v~~~~~~~~~ 132 (155)
+|.|+|+....++
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 8999999866544
No 53
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=6.4e-13 Score=106.38 Aligned_cols=115 Identities=18% Similarity=0.331 Sum_probs=95.4
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
++.|+|..|.|+.|.|.++...+..... ..-.......+|+|.|||+..+-.+++++|..||
T Consensus 577 ~k~lqgtvldGH~l~lk~S~~k~~~~~g------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG 638 (725)
T KOG0110|consen 577 LKALQGTVLDGHKLELKISENKPASTVG------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFG 638 (725)
T ss_pred HHHhcCceecCceEEEEeccCccccccc------------------cccccccccceeeeeccchHHHHHHHHHHHhccc
Confidence 3578999999999999999833222100 0111223378999999999999999999999999
Q ss_pred CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCch
Q 031682 81 EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQ 133 (155)
Q Consensus 81 ~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~ 133 (155)
.+..++++.. +|||||.|-+..+|.+|+..|.+..|.||+|.+.|+.....-+
T Consensus 639 qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~~e 697 (725)
T KOG0110|consen 639 QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNTME 697 (725)
T ss_pred ceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchHHH
Confidence 9999999864 8999999999999999999999889999999999999876533
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=8.4e-13 Score=96.21 Aligned_cols=72 Identities=24% Similarity=0.369 Sum_probs=68.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
.+|||||||..+++.+|+.+|++||+|.+|.|+ |.|+||+.++...++.||..|+|..|.|..|.|+-++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 579999999999999999999999999999999 559999999999999999999999999999999988877
No 55
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.37 E-value=4.4e-12 Score=92.78 Aligned_cols=74 Identities=28% Similarity=0.428 Sum_probs=69.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.++|||+|||..+++++|+++|..||.+..+.+..+ +|+|||+|.+.+++..|+..+++..+.|++|.|.+..+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999999888765 69999999999999999999999999999999999653
No 56
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.36 E-value=3.5e-12 Score=99.46 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=73.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
+.+||||+|++++++.|..+|+..|.|..++++.| +||+|++|.+.+++..|++.|+|.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999876 799999999999999999999999999999999999876
Q ss_pred CCch
Q 031682 130 QMTQ 133 (155)
Q Consensus 130 ~~~~ 133 (155)
....
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5433
No 57
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=9.4e-12 Score=72.90 Aligned_cols=64 Identities=33% Similarity=0.537 Sum_probs=59.3
Q ss_pred EcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 60 VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 60 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
|+|||..+++++|+.+|.+||.|..+.+..+ +++|||+|.+.++|..|+..+++..++|++|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5789999999999999999999999988765 579999999999999999999999999999887
No 58
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.33 E-value=6.3e-12 Score=88.72 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=71.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHH----HhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQ----PFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~----~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
+..+|||.||...+..++|+. +|++||+|..|..... +|-|||.|.+.+.|..|+..|+|..+.|+++++.|+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 344999999999999888877 9999999999988654 899999999999999999999999999999999999
Q ss_pred ecCCCc
Q 031682 127 FRHQMT 132 (155)
Q Consensus 127 ~~~~~~ 132 (155)
+.++.-
T Consensus 88 ~s~sdi 93 (221)
T KOG4206|consen 88 KSDSDI 93 (221)
T ss_pred cCccch
Confidence 987543
No 59
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.8e-13 Score=93.51 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=71.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
...+.-|||||||+.++|.+|-.+|++||.|..|.++++ +||||+.|++..+..-|+..|+|..+.||.|+|.-
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 356788999999999999999999999999999999987 79999999999999999999999999999999987
Q ss_pred eec
Q 031682 126 LFR 128 (155)
Q Consensus 126 ~~~ 128 (155)
...
T Consensus 112 v~~ 114 (219)
T KOG0126|consen 112 VSN 114 (219)
T ss_pred ccc
Confidence 653
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.32 E-value=2.3e-12 Score=100.69 Aligned_cols=115 Identities=20% Similarity=0.346 Sum_probs=89.1
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 82 (155)
.|.|..+.|-+|.|......+... ....+..+ ..+ -..+...||||||++.+++.+|+.+|++||.|
T Consensus 239 aLsGqrllg~pv~vq~sEaeknr~-a~~s~a~~--------~k~----~~~p~~rl~vgnLHfNite~~lr~ifepfg~I 305 (549)
T KOG0147|consen 239 ALSGQRLLGVPVIVQLSEAEKNRA-ANASPALQ--------GKG----FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKI 305 (549)
T ss_pred hhcCCcccCceeEecccHHHHHHH-Hhcccccc--------ccc----cccchhhhhhcccccCchHHHHhhhccCcccc
Confidence 478999999999999876654331 11100000 000 01122239999999999999999999999999
Q ss_pred eEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 83 ASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 83 ~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
..+.+..+ +||+||+|.+.+.|.+|++.|||.++-|+.|+|+....+.
T Consensus 306 e~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 306 ENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred eeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 99998776 7999999999999999999999999999999998876543
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2.7e-12 Score=96.34 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=72.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.|++|||.+.+.+.|+.|+..|.+||.|.+|.+.-| +||+||+|+-.|.|.-|++.|||..++||.|+| .+|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKV--grP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV--GRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccc--cCC
Confidence 588999999999999999999999999999987543 899999999999999999999999999999999 577
Q ss_pred CCCchhhh
Q 031682 129 HQMTQACT 136 (155)
Q Consensus 129 ~~~~~~~~ 136 (155)
.++.++..
T Consensus 191 sNmpQAQp 198 (544)
T KOG0124|consen 191 SNMPQAQP 198 (544)
T ss_pred CCCcccch
Confidence 77777653
No 62
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.22 E-value=4.3e-11 Score=96.96 Aligned_cols=79 Identities=23% Similarity=0.446 Sum_probs=74.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCch
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQ 133 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~ 133 (155)
++|||||+|+..+++.+|..+|+.||+|.+|.++..++||||....+.+|++|+..|....+.++.|++.|+..+-.+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999998764443
No 63
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.16 E-value=3.3e-10 Score=80.11 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=93.3
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCcccc------ccC---------------CCCCC--CCCCCCCCCCCCCCCCcCe
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQ------YSS---------------QGGYA--SNGAPGQGPQSEGDSSNTT 57 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~------~~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~ 57 (155)
+++|+|+.+.|++++|.||+.+...-.+.. ... .+... .....+........++...
T Consensus 69 ~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~i 148 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNI 148 (221)
T ss_pred HHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceE
Confidence 357999999999999999998754322210 000 00000 0000111111333567889
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccC-CeEEEEEEee
Q 031682 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEG-KFMMVMGMLF 127 (155)
Q Consensus 58 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~~~ 127 (155)
+|+.|||..++.+.+..+|.+|.....++++.. ++.+||+|.+...+..|...++|..+. ...+++.|++
T Consensus 149 lf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 149 LFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred EEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999999999999999988775 799999999999999999999999876 7778888765
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=7.2e-11 Score=85.47 Aligned_cols=82 Identities=24% Similarity=0.440 Sum_probs=72.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcc-cCC--eEEEEEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTM-EGK--FMMVMGM 125 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~-~~g--~~l~v~~ 125 (155)
.+++||||-|...-.|++++.+|..||.|.+|.+.++ |||+||.|.+..+|..||..|+|.. +-| ..|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5789999999999999999999999999999999875 8999999999999999999999984 444 6699999
Q ss_pred eecCCCchhh
Q 031682 126 LFRHQMTQAC 135 (155)
Q Consensus 126 ~~~~~~~~~~ 135 (155)
+....++.-.
T Consensus 98 ADTdkER~lR 107 (371)
T KOG0146|consen 98 ADTDKERTLR 107 (371)
T ss_pred ccchHHHHHH
Confidence 9877655543
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.15 E-value=4.5e-10 Score=86.25 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=68.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhc-ccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...+.+||.|+|+++.+.+|+++|. +.|+|+.|.+..| +||+.|+|.++|.+++|++.|+.+.+.|++|+|.-.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4456799999999999999999997 5789999998876 899999999999999999999999999999999655
Q ss_pred ec
Q 031682 127 FR 128 (155)
Q Consensus 127 ~~ 128 (155)
..
T Consensus 122 ~d 123 (608)
T KOG4212|consen 122 HD 123 (608)
T ss_pred Cc
Confidence 43
No 66
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=2.8e-10 Score=67.76 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=48.0
Q ss_pred HHHHHHHhc----ccCCeeEEE-Ee--C------CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 69 DEDLRQPFS----QYGEIASVK-IP--V------GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 69 ~~~l~~~f~----~~g~i~~~~-~~--~------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
+++|+++|+ +||.|.++. +. . .+|++||.|.+.++|..|+..|+|..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999884 32 2 2799999999999999999999999999999986
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=6.3e-11 Score=85.77 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=75.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.-+..|.|||-.||.+..+.+|..+|..||.|.+.++..| |.|+||.|++..++..||..|||..++.++|+|.
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQ 360 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQ 360 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhh
Confidence 4578999999999999999999999999999999988765 7999999999999999999999999999999999
Q ss_pred EeecCCC
Q 031682 125 MLFRHQM 131 (155)
Q Consensus 125 ~~~~~~~ 131 (155)
.-+|+..
T Consensus 361 LKRPkda 367 (371)
T KOG0146|consen 361 LKRPKDA 367 (371)
T ss_pred hcCcccc
Confidence 9888754
No 68
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.2e-10 Score=87.19 Aligned_cols=79 Identities=23% Similarity=0.313 Sum_probs=73.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.++...|||-.|.+-+++++|.-+|+.||.|..|.++++ ..||||+|.+.++++.|...|++..++.++|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 466788999999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+++-.
T Consensus 316 SQSVs 320 (479)
T KOG0415|consen 316 SQSVS 320 (479)
T ss_pred hhhhh
Confidence 98654
No 69
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.07 E-value=1.5e-09 Score=82.65 Aligned_cols=128 Identities=15% Similarity=0.185 Sum_probs=96.5
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCC--CCCCCCCCCC------CCCCCCcCeEEEcCCCCCCCHHHH
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYA--SNGAPGQGPQ------SEGDSSNTTIFVGGLDPNVTDEDL 72 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~l~v~~l~~~~~~~~l 72 (155)
|+.|+|..|+|++|||.++++..-.....+...++-.. ...+.++... .-..+++.+|++.|+|.+++|+++
T Consensus 352 ~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~l 431 (492)
T KOG1190|consen 352 MEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDL 431 (492)
T ss_pred HHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHH
Confidence 46789999999999999999886654454444443222 2222222221 123467889999999999999999
Q ss_pred HHHhcccCCeeEE-EE-eCCCCEEEEEeCCHHHHHHHHHhhCCcccCC-eEEEEEEeec
Q 031682 73 RQPFSQYGEIASV-KI-PVGKGCGFVQFANSLGQIMAINGVGHTMEGK-FMMVMGMLFR 128 (155)
Q Consensus 73 ~~~f~~~g~i~~~-~~-~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~~~~ 128 (155)
+..|...|...+. .. ..++-++++.+.+.|+|..|+..++.+.+++ ..++|+|+++
T Consensus 432 k~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 432 KNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred HHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999998865554 33 3468899999999999999999999998875 4899999875
No 70
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=2.9e-10 Score=89.32 Aligned_cols=76 Identities=24% Similarity=0.316 Sum_probs=68.7
Q ss_pred CCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 47 PQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 47 ~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
...+.+....+|+|-|||..+++++|..+|+.||+|+.++..+. +|.+||+|.+..+|++|++.|++..+.|++|+
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34444677889999999999999999999999999999876554 79999999999999999999999999999988
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.4e-10 Score=88.17 Aligned_cols=125 Identities=23% Similarity=0.370 Sum_probs=96.0
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
+..|+|..+.+..+.|..+..+......-.. .-...............|||.|++..++.+.|++.|+.||
T Consensus 225 v~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~---------~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~G 295 (369)
T KOG0123|consen 225 VETLNGKIFGDKELYVGRAQKKSEREAELKR---------KFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFG 295 (369)
T ss_pred HHhccCCcCCccceeecccccchhhHHHHhh---------hhHhhhhhccccccccccccccCccccchhHHHHHHhccc
Confidence 3578999999999999988874332100000 0000011122245678899999999999999999999999
Q ss_pred CeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCchh
Q 031682 81 EIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQA 134 (155)
Q Consensus 81 ~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~ 134 (155)
.|..+.+..+ +|++||.|.+.++|..|+..+++..+.++++.|.++.....+.+
T Consensus 296 eI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~ 354 (369)
T KOG0123|consen 296 EITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRA 354 (369)
T ss_pred ceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchh
Confidence 9999988764 89999999999999999999999999999999999986554433
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.02 E-value=1.4e-09 Score=83.60 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=68.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC-CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...+.|.|||.|||.+.|+..|++-|..||.|....|.. .+..+.|.|.+.++|++|+..|+|..++|+.|+|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 356788999999999999999999999999999988844 3566699999999999999999999999999999873
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=2.6e-09 Score=86.12 Aligned_cols=73 Identities=29% Similarity=0.401 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
++|||.||+++.+.+.+...|..+|.|..+.|... .|||||+|.+.++|..|+..|+|..++|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988654 299999999999999999999999999999999999
Q ss_pred ec
Q 031682 127 FR 128 (155)
Q Consensus 127 ~~ 128 (155)
..
T Consensus 596 ~~ 597 (725)
T KOG0110|consen 596 EN 597 (725)
T ss_pred cC
Confidence 83
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=4.1e-09 Score=73.68 Aligned_cols=80 Identities=13% Similarity=0.276 Sum_probs=71.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhccc-CCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQY-GEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
+......-+|++.+|..+.+..+...|.++ |.+...++.++ +|||||+|++.+.|+-|.+.||+..+.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344566778999999999999999999998 67777777554 89999999999999999999999999999999
Q ss_pred EEEeecC
Q 031682 123 MGMLFRH 129 (155)
Q Consensus 123 v~~~~~~ 129 (155)
|.+-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9999877
No 75
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.7e-09 Score=75.98 Aligned_cols=117 Identities=14% Similarity=0.194 Sum_probs=88.8
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
++.+||..|+|..+-|+|+....... +.+..+ .+........+.....+.+.|.++...+.+.+|.++|.++|
T Consensus 52 v~~l~~~~l~~e~~vve~~r~~~~~~---g~~~~g----~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g 124 (216)
T KOG0106|consen 52 VHDLDGKELCGERLVVEHARGKRRGR---GRPRGG----DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG 124 (216)
T ss_pred cchhcCceecceeeeeeccccccccc---CCCCCC----CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC
Confidence 46789999999999999998653221 000000 00011233444557788999999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 81 EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 81 ~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
.+..... ..+++||+|...+++..|+..+++..+.++.|.+.+.
T Consensus 125 ~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 125 EVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred CCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 8844433 5789999999999999999999999999999999443
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.94 E-value=6.9e-09 Score=75.33 Aligned_cols=85 Identities=19% Similarity=0.248 Sum_probs=74.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.+....+|+|.|||+.+.+.+|+++|..||.+..+.+..+ .|.|-|.|...++|.+|++.++|..++|+++++..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445588999999999999999999999998888877765 59999999999999999999999999999999988
Q ss_pred eecCCCchhh
Q 031682 126 LFRHQMTQAC 135 (155)
Q Consensus 126 ~~~~~~~~~~ 135 (155)
..+.......
T Consensus 159 i~~~~~~~r~ 168 (243)
T KOG0533|consen 159 ISSPSQSKRL 168 (243)
T ss_pred ecCccccccc
Confidence 8776655433
No 77
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.94 E-value=2.5e-09 Score=80.42 Aligned_cols=81 Identities=27% Similarity=0.398 Sum_probs=71.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
...++||++||.++++.++++.|.+||.|..+.+..+ ++|+||.|.+++..++++. ..-+.|.|+.+.|.-+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 5779999999999999999999999999999888765 7999999999999998876 57778999999999999
Q ss_pred cCCCchhh
Q 031682 128 RHQMTQAC 135 (155)
Q Consensus 128 ~~~~~~~~ 135 (155)
|+......
T Consensus 175 pk~~~~~~ 182 (311)
T KOG4205|consen 175 PKEVMQST 182 (311)
T ss_pred chhhcccc
Confidence 88655544
No 78
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.88 E-value=9.1e-09 Score=83.14 Aligned_cols=80 Identities=31% Similarity=0.546 Sum_probs=73.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---------CCCEEEEEeCCHHHHHHHHHhhCCcccCCeE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANSLGQIMAINGVGHTMEGKFM 120 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 120 (155)
..++..+.|||+||++.+++..|-..|+.||++..+++.- ++.|+||.|-+..++++|+..|+|..+.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 3467889999999999999999999999999999998853 2689999999999999999999999999999
Q ss_pred EEEEEeecC
Q 031682 121 MVMGMLFRH 129 (155)
Q Consensus 121 l~v~~~~~~ 129 (155)
+++.|++.-
T Consensus 249 ~K~gWgk~V 257 (877)
T KOG0151|consen 249 MKLGWGKAV 257 (877)
T ss_pred eeecccccc
Confidence 999999654
No 79
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.86 E-value=7.5e-09 Score=82.05 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=71.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
.-.+.|||.+|+..+...+|+.+|++||+|.-.+++.+ +.|+||+..+..+|.+||..|+...|.|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34678999999999999999999999999998888764 799999999999999999999999999999999988
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7654
No 80
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.82 E-value=4.8e-08 Score=69.32 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=65.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHhhCCcccC---CeEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANSLGQIMAINGVGHTMEG---KFMMV 122 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~~fV~f~~~~~a~~a~~~l~g~~~~---g~~l~ 122 (155)
...++|||.+||.++...+|+.+|..|-..+.+.+... +-++|+.|.+...|..|+..|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 44789999999999999999999999865555544322 469999999999999999999999875 67899
Q ss_pred EEEeecCC
Q 031682 123 MGMLFRHQ 130 (155)
Q Consensus 123 v~~~~~~~ 130 (155)
++++++..
T Consensus 112 iElAKSNt 119 (284)
T KOG1457|consen 112 IELAKSNT 119 (284)
T ss_pred eeehhcCc
Confidence 99998653
No 81
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=1.6e-07 Score=64.88 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=85.3
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 82 (155)
.-||.-++|-.|+|++++........ +...++......+......++.......|.|.+||++-++.+|+++...-|.|
T Consensus 64 gRdGYdydg~rLRVEfprggr~s~~~-~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdv 142 (241)
T KOG0105|consen 64 GRDGYDYDGCRLRVEFPRGGRSSSDR-RGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDV 142 (241)
T ss_pred cccccccCcceEEEEeccCCCccccc-ccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCe
Confidence 45788899999999999887543222 11222222222222223345556678899999999999999999999999999
Q ss_pred eEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCccc
Q 031682 83 ASVKIPVGKGCGFVQFANSLGQIMAINGVGHTME 116 (155)
Q Consensus 83 ~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~ 116 (155)
....+.++ |++.|+|-..++-+.|+..|....+
T Consensus 143 Cfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 143 CFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeeecc-cceeeeeeehhhHHHHHHhhccccc
Confidence 99988887 7999999999999999999988755
No 82
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.73 E-value=1.4e-08 Score=72.37 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=66.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
..+||++||+.+.+.++..+|..||.+..+.+. .||+||+|.+..+|..|+.-+++..|.|-.+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 468999999999999999999999999998776 468899999999999999999999999988999999854
No 83
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.72 E-value=1.5e-08 Score=76.25 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=67.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
..++|||++|+++++++.|++.|.+||+|.+|.+.++ +||+||+|++.+....++. ..-+.++|+.|.+.-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 6789999999999999999999999999999999876 7999999998888777765 24557899998888887
Q ss_pred cCCCch
Q 031682 128 RHQMTQ 133 (155)
Q Consensus 128 ~~~~~~ 133 (155)
++..++
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 765444
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.63 E-value=3.2e-07 Score=68.81 Aligned_cols=81 Identities=19% Similarity=0.183 Sum_probs=68.8
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG-----KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 48 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
..+.......|||+|||.++|.+++.++|+++|-|.+ |++-++ +|=+++.|...++.+-|+..|++.
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcc
Confidence 3344566788999999999999999999999996653 344333 799999999999999999999999
Q ss_pred ccCCeEEEEEEeec
Q 031682 115 MEGKFMMVMGMLFR 128 (155)
Q Consensus 115 ~~~g~~l~v~~~~~ 128 (155)
.+.|+.|+|.-++-
T Consensus 207 ~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 207 ELRGKKLRVERAKF 220 (382)
T ss_pred cccCcEEEEehhhh
Confidence 99999999988763
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=3.3e-08 Score=69.92 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=69.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
+...+|||+|+...++++.|.++|-+-|+|.++.|+.+ .-|+||.|.++.+..-|++-++|..+.++++.+.+-..
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 45789999999999999999999999999999999765 24999999999999999999999999999988877654
Q ss_pred C
Q 031682 129 H 129 (155)
Q Consensus 129 ~ 129 (155)
.
T Consensus 87 ~ 87 (267)
T KOG4454|consen 87 N 87 (267)
T ss_pred C
Confidence 3
No 86
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.56 E-value=5.2e-07 Score=70.51 Aligned_cols=76 Identities=28% Similarity=0.321 Sum_probs=65.0
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
...+|||.|||.++++.+|+++|..||.|+...|... .+|+||+|.+.+++..|+.. +-..++++++.|.--+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3445999999999999999999999999999887542 28999999999999999986 4667899999998777
Q ss_pred cCC
Q 031682 128 RHQ 130 (155)
Q Consensus 128 ~~~ 130 (155)
+..
T Consensus 366 ~~~ 368 (419)
T KOG0116|consen 366 PGF 368 (419)
T ss_pred ccc
Confidence 643
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=67.70 Aligned_cols=78 Identities=23% Similarity=0.358 Sum_probs=68.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
-+....+||.|.|..+++++.|-..|.+|-.....+++++ +||+||.|.+..++..|+..|+|.-++.++|+++
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3567899999999999999999999999976666666665 7999999999999999999999999999999886
Q ss_pred Eeec
Q 031682 125 MLFR 128 (155)
Q Consensus 125 ~~~~ 128 (155)
-+.-
T Consensus 266 kS~w 269 (290)
T KOG0226|consen 266 KSEW 269 (290)
T ss_pred hhhH
Confidence 5543
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=3.3e-07 Score=72.64 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=81.3
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCC---CCCH-------H
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDP---NVTD-------E 70 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~---~~~~-------~ 70 (155)
+..|||+.++++.+-|..|-...........-++. ..........+....+...|.+.|+-. ..++ +
T Consensus 348 ~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~---~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlE 424 (500)
T KOG0120|consen 348 IAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQS---QVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILE 424 (500)
T ss_pred hcccchhhhcCceeEeehhhccchhccccCCcccc---ccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHH
Confidence 35789999999999999888765442222110000 011111111122223344444444421 1222 3
Q ss_pred HHHHHhcccCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 71 DLRQPFSQYGEIASVKIPVG---------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 71 ~l~~~f~~~g~i~~~~~~~~---------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
+++.-+++||.|..|.+++. .|..||+|.+.+++++|+..|+|..+.|+.|...|-..
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 44556678999999998764 58899999999999999999999999999999888654
No 89
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.53 E-value=1e-06 Score=55.42 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=59.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcc--cCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccC----CeEEEE
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQ--YGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEG----KFMMVM 123 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~----g~~l~v 123 (155)
+||.|.|+|...+.++|.+++.. .|....+.++.| .|||||.|.+.+.+......++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988875 356666666655 699999999999999999999999764 455677
Q ss_pred EEee
Q 031682 124 GMLF 127 (155)
Q Consensus 124 ~~~~ 127 (155)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7765
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.50 E-value=6.4e-07 Score=68.62 Aligned_cols=74 Identities=20% Similarity=0.265 Sum_probs=68.0
Q ss_pred cCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
...|.|.||..+ +|.+.|..+|+.||.|.+++|... +.-|+|.|.+...|.-|++.|+|..+.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578888888775 999999999999999999999876 57899999999999999999999999999999999874
No 91
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.46 E-value=1.7e-06 Score=65.03 Aligned_cols=126 Identities=11% Similarity=0.098 Sum_probs=82.7
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCC-----------CCCCCCCCCCCCCCCCCCCCcCeEEEcCCCC----C
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQ-----------GGYASNGAPGQGPQSEGDSSNTTIFVGGLDP----N 66 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~----~ 66 (155)
..||+..|.|+.|+|..|.........-..... .....-.-.+....+......++|.+.|+-. .
T Consensus 201 ~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~ 280 (382)
T KOG1548|consen 201 KILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFE 280 (382)
T ss_pred HHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhc
Confidence 468999999999999999876433211000000 0000000011111222334567888888722 1
Q ss_pred CC-------HHHHHHHhcccCCeeEEEEe--CCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 67 VT-------DEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 67 ~~-------~~~l~~~f~~~g~i~~~~~~--~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
-+ .++|.+-..+||.|.++.+. ...|++-|.|.+.++|..||..|+|+.++||.|....-.
T Consensus 281 ~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 281 KNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 22 23555667889999999886 347999999999999999999999999999999776554
No 92
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=5.2e-07 Score=65.55 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=69.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.......+||+|+.+.++.+.++.+|..||.+..+.++.+ +|++||+|.+.+..+.++. |++..+.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3466789999999999998889999999999987777654 7899999999999999999 99999999999998
Q ss_pred EeecC
Q 031682 125 MLFRH 129 (155)
Q Consensus 125 ~~~~~ 129 (155)
+-+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87744
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.43 E-value=2.2e-06 Score=51.94 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=48.0
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhcccC-CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 56 TTIFVGGLDPNVTDED----LRQPFSQYG-EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
..|||.|||...+... |+.++.-+| +|..+ ..+.|+|.|.+.+.|.+|...|+|..+-|++|.|.|....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 4689999999988765 456666776 65554 2589999999999999999999999999999999998543
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=2.1e-06 Score=68.13 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=69.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
....++||++||..+++..+.+++..||.+....++.+ +||+|.+|.+......|+..|+|..++++.+.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 45678999999999999999999999998887777654 899999999999999999999999999999999888
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
....
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 7643
No 95
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.25 E-value=2.9e-06 Score=63.75 Aligned_cols=75 Identities=19% Similarity=0.331 Sum_probs=61.6
Q ss_pred cCeEEEcCCCCCCCHHH----H--HHHhcccCCeeEEEEeCC-------CC--EEEEEeCCHHHHHHHHHhhCCcccCCe
Q 031682 55 NTTIFVGGLDPNVTDED----L--RQPFSQYGEIASVKIPVG-------KG--CGFVQFANSLGQIMAINGVGHTMEGKF 119 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~----l--~~~f~~~g~i~~~~~~~~-------~g--~~fV~f~~~~~a~~a~~~l~g~~~~g~ 119 (155)
..-+||-+|++.+..++ | .++|++||+|.+|.+.+. .+ -.||+|.+.++|.+||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34579999988765443 3 489999999999988653 12 249999999999999999999999999
Q ss_pred EEEEEEeecC
Q 031682 120 MMVMGMLFRH 129 (155)
Q Consensus 120 ~l~v~~~~~~ 129 (155)
.|+..|+..+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999998654
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.23 E-value=3.7e-05 Score=58.64 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=69.3
Q ss_pred CCCcCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
..+.+.++|-+|+-. ++-+.|..+|..||.|+++++.+. .|.|.|+..+..+.++|+..|++..+-|.+|.|++++..
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 456788999999876 777889999999999999999887 599999999999999999999999999989999888743
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.21 E-value=1.6e-06 Score=61.69 Aligned_cols=62 Identities=27% Similarity=0.456 Sum_probs=54.0
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHhhCCccc
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANSLGQIMAINGVGHTME 116 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~ 116 (155)
..+|||.||...++|++|+.+|+.|.....+++.. +-.++|++|++.+.|..|+..|+|..+
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 45799999999999999999999998666666643 356899999999999999999999866
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.20 E-value=4.8e-06 Score=53.31 Aligned_cols=69 Identities=23% Similarity=0.384 Sum_probs=44.5
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCc-----ccCCeEEEEE
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHT-----MEGKFMMVMG 124 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~-----~~~g~~l~v~ 124 (155)
+.|++.+++..++.++|++.|..||.|..|.+..+-..|+|.|.+.+.|..|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56888889999999999999999999999999988889999999999999998865433 4555544443
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.11 E-value=7e-06 Score=65.03 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=50.6
Q ss_pred HHHHHhcccCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 71 DLRQPFSQYGEIASVKIPVGK-GCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 71 ~l~~~f~~~g~i~~~~~~~~~-g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
++.+-.++||+|..|.+.... |+.||.|.+.+.|..|+..|||+||.|+.|...|-.
T Consensus 469 dV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 469 DVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 444445899999999887764 999999999999999999999999999999998875
No 100
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.03 E-value=1.9e-05 Score=44.22 Aligned_cols=52 Identities=23% Similarity=0.469 Sum_probs=43.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHH
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAI 108 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~ 108 (155)
+.|-|.|.+++..+.. ..+|..||+|..+.+.......+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 4577888888776554 558899999999999877889999999999999984
No 101
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.99 E-value=5.9e-05 Score=59.27 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=61.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.....|-+.+|||+.|+++|.++|+.++ |+.+.+.+. .|-|||+|.+++++++|++. +...+..+-|.|.-+.+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCC
Confidence 4556788899999999999999999995 777777654 69999999999999999983 66677778788865543
No 102
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.87 E-value=0.00011 Score=46.51 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=52.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEE-------------EeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCe-
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK-------------IPVGKGCGFVQFANSLGQIMAINGVGHTMEGKF- 119 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~-------------~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~- 119 (155)
....|.|-+.|+... ..+-+.|++||.|.+.. .........|.|.+..+|.+|+.. ||..++|.
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 345577888998854 55667899999998885 455678999999999999999984 99999885
Q ss_pred EEEEEEeec
Q 031682 120 MMVMGMLFR 128 (155)
Q Consensus 120 ~l~v~~~~~ 128 (155)
.+-|.|+.+
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 556777643
No 103
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.86 E-value=4.1e-05 Score=63.97 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEeec
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGK--FMMVMGMLFR 128 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~ 128 (155)
.......+|+++|..+.....|...|..||.|..|.+-.+..|++|.|.+...+..|+..+-|..|+| ++++|.|+.+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 44667889999999999999999999999999999998888999999999999999999999999986 7799999986
Q ss_pred CC
Q 031682 129 HQ 130 (155)
Q Consensus 129 ~~ 130 (155)
..
T Consensus 531 ~~ 532 (975)
T KOG0112|consen 531 PG 532 (975)
T ss_pred CC
Confidence 54
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.84 E-value=0.00013 Score=57.38 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=57.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
.....|-+++||+.+++++|.++|+..--+.. +.++.+ .|-|||.|++.+.++.|+.. |...++.+-|.|.-+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 35678889999999999999999998754443 223332 68999999999999999874 556777777777655
Q ss_pred e
Q 031682 127 F 127 (155)
Q Consensus 127 ~ 127 (155)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 4
No 105
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.70 E-value=9.6e-05 Score=56.02 Aligned_cols=80 Identities=26% Similarity=0.206 Sum_probs=68.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEE--------EEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV--------KIPVG------KGCGFVQFANSLGQIMAINGVGHTMEG 117 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~--------~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~ 117 (155)
.....+|||-+||..+++.+|.++|.+++.|..- .+-++ |+-|.|.|.+...|+.|++-+.++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 5667899999999999999999999999866532 22222 799999999999999999999999999
Q ss_pred CeEEEEEEeecCCC
Q 031682 118 KFMMVMGMLFRHQM 131 (155)
Q Consensus 118 g~~l~v~~~~~~~~ 131 (155)
+..|+|..+..++.
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999999887653
No 106
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.63 E-value=2.7e-05 Score=56.52 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=48.3
Q ss_pred HHHHhc-ccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 72 LRQPFS-QYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 72 l~~~f~-~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
+...|+ +||+|+++.+... +|-++|.|..+++|++|+..|++.++.|++|.+.+..-
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 333344 7999999877554 78999999999999999999999999999999988764
No 107
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.62 E-value=3.3e-05 Score=56.02 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=58.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------------------CCEEEEEeCCHHHHHHHHHhhCCcc
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------------------KGCGFVQFANSLGQIMAINGVGHTM 115 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------------------~g~~fV~f~~~~~a~~a~~~l~g~~ 115 (155)
..-.||+++||+.++...|+++|+.||.|-+|.+-.. -.-|.|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999987542 1246889999999999999999999
Q ss_pred cCCeE
Q 031682 116 EGKFM 120 (155)
Q Consensus 116 ~~g~~ 120 (155)
++|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.61 E-value=0.00068 Score=51.96 Aligned_cols=77 Identities=12% Similarity=0.036 Sum_probs=62.2
Q ss_pred CcCeEEEc--CCCCCCCHHHHHHHhcccCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHhhCCccc--CCeEEEEEEeec
Q 031682 54 SNTTIFVG--GLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANSLGQIMAINGVGHTME--GKFMMVMGMLFR 128 (155)
Q Consensus 54 ~~~~l~v~--~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-g~~fV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~~~~ 128 (155)
....|.+. |--+.++-+.|..+....|+|.+|.|.... --|.|+|++.+.|.+|...|||..+ +.+.|+|+|++|
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 34444433 444568889999999999999999887653 4689999999999999999999976 347899999998
Q ss_pred CC
Q 031682 129 HQ 130 (155)
Q Consensus 129 ~~ 130 (155)
..
T Consensus 199 ~r 200 (494)
T KOG1456|consen 199 TR 200 (494)
T ss_pred ce
Confidence 63
No 109
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.52 E-value=0.00014 Score=52.88 Aligned_cols=76 Identities=24% Similarity=0.377 Sum_probs=66.1
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 82 (155)
+|+|...-|+.++|.|+.. ..|||.||+..++-+.+...|+.||.|
T Consensus 13 eLd~~~~~~~~lr~rfa~~----------------------------------a~l~V~nl~~~~sndll~~~f~~fg~~ 58 (275)
T KOG0115|consen 13 ELDGRFPKGRSLRVRFAMH----------------------------------AELYVVNLMQGASNDLLEQAFRRFGPI 58 (275)
T ss_pred hcCCCCCCCCceEEEeecc----------------------------------ceEEEEecchhhhhHHHHHhhhhcCcc
Confidence 6888888999999999874 359999999999999999999999999
Q ss_pred eEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhC
Q 031682 83 ASVKIPVG-----KGCGFVQFANSLGQIMAINGVG 112 (155)
Q Consensus 83 ~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~ 112 (155)
....+..| .+-++|.|.....+.+|+..+.
T Consensus 59 e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 59 ERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred chheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 88776654 5788999999999999998773
No 110
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.44 E-value=0.00011 Score=55.21 Aligned_cols=79 Identities=30% Similarity=0.465 Sum_probs=68.4
Q ss_pred CcCeEE-EcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 54 SNTTIF-VGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 54 ~~~~l~-v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++| |++++..+++++|+.+|..+|.|..++++.. +|+++|.|........++.. +...+.++++.+.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344555 9999999999999999999999999988764 79999999999999999886 788899999999999
Q ss_pred ecCCCch
Q 031682 127 FRHQMTQ 133 (155)
Q Consensus 127 ~~~~~~~ 133 (155)
.+.+...
T Consensus 262 ~~~~~~~ 268 (285)
T KOG4210|consen 262 EPRPKSD 268 (285)
T ss_pred CCCcccc
Confidence 8876443
No 111
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.43 E-value=0.00016 Score=56.19 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=61.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCc-ccCCeEEEEEEeecCC
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHT-MEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~-~~~g~~l~v~~~~~~~ 130 (155)
.++|++||.+.++..+|+.+|...-.-..-.+....||+||.+.+..+|.+|++.++|. .+.|.++.+.++-++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 36899999999999999999986532222233344699999999999999999999998 6899999998887654
No 112
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.42 E-value=0.00092 Score=55.00 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=58.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCee-EEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIA-SVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
+.|-+.|+|++++-++|-++|..|-.+- +|.+... .|-|.|.|++.++|.+|...++++.|.++.|++..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4778899999999999999999996332 3333322 68999999999999999999999999999998864
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0008 Score=53.40 Aligned_cols=58 Identities=24% Similarity=0.476 Sum_probs=45.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---------CCC---EEEEEeCCHHHHHHHHHhh
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKG---CGFVQFANSLGQIMAINGV 111 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---------~~g---~~fV~f~~~~~a~~a~~~l 111 (155)
.-.++||||+||++++|+.|...|..||.+.. ..+. .+| |+|+.|+++.+...-+..+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 45688999999999999999999999997443 3331 156 9999999988877766543
No 114
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.38 E-value=0.00021 Score=57.49 Aligned_cols=79 Identities=8% Similarity=0.091 Sum_probs=65.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcc-cCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCccc---CCeEEEEEEe
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTME---GKFMMVMGML 126 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~---~g~~l~v~~~ 126 (155)
....+..|||.||-.-+|...|+.++.. .|.|....|..-+..|||.|.+.++|......|||..+ +.+.|.+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 3456789999999999999999999996 55666665555588999999999999999999999854 5577999998
Q ss_pred ecC
Q 031682 127 FRH 129 (155)
Q Consensus 127 ~~~ 129 (155)
...
T Consensus 520 ~~d 522 (718)
T KOG2416|consen 520 RAD 522 (718)
T ss_pred chh
Confidence 754
No 115
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.30 E-value=0.0003 Score=54.58 Aligned_cols=65 Identities=23% Similarity=0.305 Sum_probs=56.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------------------CCEEEEEeCCHHHHHHHHHh
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------------------KGCGFVQFANSLGQIMAING 110 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-------------------~g~~fV~f~~~~~a~~a~~~ 110 (155)
.+..+.++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.. +-+|+|+|...+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34568999999999999888999999999999999998652 56899999999999999988
Q ss_pred hCCc
Q 031682 111 VGHT 114 (155)
Q Consensus 111 l~g~ 114 (155)
++..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7543
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.21 E-value=0.0012 Score=50.82 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=71.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccC-CeeE--EEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIAS--VKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~--~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....|-+++||+..+-++|-++|..|. .|.. +.++.+ .|-|||+|.+.+.|..|....+.+...++-|.|.
T Consensus 278 ~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 278 RSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3466788999999999999999999886 4444 555443 6999999999999999999888887778888886
Q ss_pred EeecCC------CchhhhhhhccCcccceeee
Q 031682 125 MLFRHQ------MTQACTLQQLRPMGLTLCMA 150 (155)
Q Consensus 125 ~~~~~~------~~~~~~~~~~~~~~~~~~~~ 150 (155)
-+.-.. .......++..|++..-++-
T Consensus 358 p~S~eeln~vL~~g~~g~~~q~PPP~plp~~g 389 (508)
T KOG1365|consen 358 PCSVEELNEVLSGGLVGQQHQVPPPAPLPFMG 389 (508)
T ss_pred eccHHHHHHHHhcCcccccCCCCCCCCccccC
Confidence 655332 12222345556666555543
No 117
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.21 E-value=0.00026 Score=53.75 Aligned_cols=70 Identities=17% Similarity=0.162 Sum_probs=57.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
....+|||||-|++++++|.+.+...| .+.++++..+ |||++|...+..+.++.++.|.-+++.|+.-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 345789999999999999999888776 5666665543 899999999999999999999999998865444
No 118
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.18 E-value=0.0019 Score=51.36 Aligned_cols=58 Identities=36% Similarity=0.549 Sum_probs=52.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhc-ccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHh
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFS-QYGEIASVKIPVG------KGCGFVQFANSLGQIMAING 110 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~ 110 (155)
.+.+|||||+||.-++.++|-.+|+ -||.|.-+-|..| +|-|-|+|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 5678999999999999999999999 5999999988766 79999999999998888864
No 119
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.15 E-value=0.0004 Score=54.56 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=63.2
Q ss_pred CCcCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 53 SSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 53 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
...+.|-+.-.++. -+.++|..+|.+||+|..|.+...--.|.|+|.+..+|-.|.. .++..|+++.|+|.|..+.+
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 44556666666665 4568999999999999999987666789999999999877755 68999999999999999854
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.10 E-value=0.0019 Score=48.13 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=49.6
Q ss_pred HHHHHHhcccCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 70 EDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 70 ~~l~~~f~~~g~i~~~~~~~~-------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
.++++..++||+|..|.|... ---.||+|...++|.+|+.-|+|+-|+|+.++.+|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 456677889999999987653 2457999999999999999999999999999988865
No 121
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.00 E-value=0.0073 Score=40.46 Aligned_cols=78 Identities=22% Similarity=0.225 Sum_probs=58.2
Q ss_pred CCCCCCcCeEEEcCCCCC----CCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 49 SEGDSSNTTIFVGGLDPN----VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~----~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
...+++-.+|.|+=|... -+-..+...++.||+|.++... ++.-|.|.|.+..+|..|+..++. ..-|..+.+.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 334567778888755444 3334555667889999998653 457899999999999999999887 5566778999
Q ss_pred Eeec
Q 031682 125 MLFR 128 (155)
Q Consensus 125 ~~~~ 128 (155)
|..+
T Consensus 158 Wqqr 161 (166)
T PF15023_consen 158 WQQR 161 (166)
T ss_pred cccc
Confidence 8764
No 122
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0014 Score=52.70 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=57.5
Q ss_pred CCcCeEEEcCCCCCCCH------HHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccC-CeE
Q 031682 53 SSNTTIFVGGLDPNVTD------EDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEG-KFM 120 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~------~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~ 120 (155)
.-...|+|.|+|---.. ..|.++|+++|++....++.+ +||.|++|.+..+|..|+..|+|..|+ ++.
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34567888898764222 245688999999999988854 799999999999999999999999875 455
Q ss_pred EEEEE
Q 031682 121 MVMGM 125 (155)
Q Consensus 121 l~v~~ 125 (155)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 65543
No 123
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.82 E-value=0.0066 Score=42.75 Aligned_cols=64 Identities=13% Similarity=-0.091 Sum_probs=48.6
Q ss_pred CHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhC--CcccCCeEEEEEEeecCCC
Q 031682 68 TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVG--HTMEGKFMMVMGMLFRHQM 131 (155)
Q Consensus 68 ~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~--g~~~~g~~l~v~~~~~~~~ 131 (155)
....|+++|..|+.+......+.-+-..|.|.+.+.|..|...|+ +..+.|..+++.|+.....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 447899999999988888888877789999999999999999999 8999999999999965543
No 124
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.81 E-value=0.012 Score=39.66 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=51.5
Q ss_pred CCcCeEEEcCCC----C--CCCH---HHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 53 SSNTTIFVGGLD----P--NVTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 53 ~~~~~l~v~~l~----~--~~~~---~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
++..+|.|.=+. . ..++ ..|-+.|..||.+.-+++.. +.-+|+|.+-..|.+|+. ++|..+.|+.|+|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 455666665333 1 2333 25667788999988888875 478999999999999987 7999999999999
Q ss_pred EEeecCCCch
Q 031682 124 GMLFRHQMTQ 133 (155)
Q Consensus 124 ~~~~~~~~~~ 133 (155)
+.-.|.....
T Consensus 102 ~LKtpdW~~~ 111 (146)
T PF08952_consen 102 RLKTPDWLKG 111 (146)
T ss_dssp EE--------
T ss_pred EeCCccHHHH
Confidence 9988876544
No 125
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.72 E-value=0.019 Score=34.96 Aligned_cols=57 Identities=21% Similarity=0.280 Sum_probs=42.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVG 112 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 112 (155)
...+..||+ +|......+|.++|+.||.|.---+. + .-|||.....+.+..++..+.
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~-d-TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN-D-TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC-T-TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc-C-CcEEEEeecHHHHHHHHHHhc
Confidence 345566776 89999999999999999987655554 3 479999999999999988765
No 126
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.59 E-value=0.025 Score=32.49 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=43.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhccc---CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhh
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQY---GEIASVKIPVGKGCGFVQFANSLGQIMAINGV 111 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~---g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 111 (155)
...+|+|.|++. ++.++++.+|..| .....+..+-+ .-|-|.|.+.+.|.+|+..|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 356799999854 6778899999988 13556766666 45888899999999998754
No 127
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.36 E-value=0.0011 Score=50.03 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=60.7
Q ss_pred cCeEEEcCCCCCCCHH-HH--HHHhcccCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 55 NTTIFVGGLDPNVTDE-DL--RQPFSQYGEIASVKIPVG---------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~-~l--~~~f~~~g~i~~~~~~~~---------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
...+||-+|+..+.++ .| .+.|.+||.|.++.+..+ ..-++|+|...++|..||...+|..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3557888888875544 44 367889999999988664 23479999999999999999999999999988
Q ss_pred EEEeecCC
Q 031682 123 MGMLFRHQ 130 (155)
Q Consensus 123 v~~~~~~~ 130 (155)
.+++..+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88877653
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.21 E-value=0.012 Score=45.55 Aligned_cols=72 Identities=18% Similarity=0.251 Sum_probs=56.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEE-EEEEe
Q 031682 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANSLGQIMAINGVGHTMEGKFMM-VMGML 126 (155)
Q Consensus 57 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l-~v~~~ 126 (155)
.|.|.||.+.++.++++.+|...|+|..+.+... .-.|||.|.+...+..|.. |....+-++.| .+-|+
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 7899999999999999999999999999987652 5789999999888877754 66666655554 44444
Q ss_pred ecC
Q 031682 127 FRH 129 (155)
Q Consensus 127 ~~~ 129 (155)
...
T Consensus 88 ~~~ 90 (479)
T KOG4676|consen 88 DEV 90 (479)
T ss_pred CCC
Confidence 443
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.19 E-value=0.00019 Score=59.78 Aligned_cols=65 Identities=31% Similarity=0.433 Sum_probs=53.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEe--C--C--CCEEEEEeCCHHHHHHHHHhhCCcccCC
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--V--G--KGCGFVQFANSLGQIMAINGVGHTMEGK 118 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~--~--~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g 118 (155)
...++||+||+..+.+.+|...|..+|.+..+.+. . + +|.||+.|...+++.+|+....+..++.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 45678999999999999999999999987776554 1 1 8999999999999999998655555553
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.91 E-value=0.0017 Score=54.66 Aligned_cols=78 Identities=22% Similarity=0.306 Sum_probs=66.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
+...+.+||+|||+..+++.+|+..|..+|.+.++.|-.. .-++||.|.+...+..|...+.+..|....+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 3456789999999999999999999999999999988543 47899999999999999999999887665667766
Q ss_pred eec
Q 031682 126 LFR 128 (155)
Q Consensus 126 ~~~ 128 (155)
+.+
T Consensus 448 G~~ 450 (975)
T KOG0112|consen 448 GQP 450 (975)
T ss_pred ccc
Confidence 653
No 131
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.74 E-value=0.094 Score=39.44 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=53.2
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeE-EEEEEe
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFM-MVMGML 126 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~-l~v~~~ 126 (155)
..=|-|-++++.-... +-.+|++||.|.+......-.+-+|.|.++.+|.+||. .+|..|+|.. |-|.-+
T Consensus 197 D~WVTVfGFppg~~s~-vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSI-VLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccchhH-HHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 3445556787765544 45679999999998777667899999999999999998 4899888854 444443
No 132
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.74 E-value=0.0086 Score=50.46 Aligned_cols=78 Identities=17% Similarity=0.111 Sum_probs=65.7
Q ss_pred EEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCccc--CCeEEEEEEeecCCCchhh
Q 031682 58 IFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTME--GKFMMVMGMLFRHQMTQAC 135 (155)
Q Consensus 58 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~~~~~~~~~~~ 135 (155)
.++.|.+-..+...|-.++.+||.+.+.+..++-..+.|+|.+.+.|..|++.++|+++ .|-+.+|.+++..+.-+..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ep~ 380 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMYEPP 380 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccccCC
Confidence 34445555677788999999999999999999989999999999999999999999974 5788999999987655443
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.38 E-value=0.05 Score=45.29 Aligned_cols=80 Identities=10% Similarity=0.073 Sum_probs=60.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
........|||..||..+++..+-++|.....|++ |.+... ++.|||.|...+++..|...-+.+-++.+.|+|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 34456789999999999999999999988766666 555432 699999999988877776544444566788888
Q ss_pred EEeecC
Q 031682 124 GMLFRH 129 (155)
Q Consensus 124 ~~~~~~ 129 (155)
+-....
T Consensus 509 ~si~~~ 514 (944)
T KOG4307|consen 509 DSIADY 514 (944)
T ss_pred echhhH
Confidence 766543
No 134
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.22 E-value=0.39 Score=30.96 Aligned_cols=63 Identities=8% Similarity=-0.036 Sum_probs=45.4
Q ss_pred CeEEE-cCCCCCCCHHHHHHHhcccC-CeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCC
Q 031682 56 TTIFV-GGLDPNVTDEDLRQPFSQYG-EIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGK 118 (155)
Q Consensus 56 ~~l~v-~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g 118 (155)
..+.+ ...|..++...|..+.+.+- .|..+++.++ +=.+++.|.+..+|......+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444 34444455566665555554 6777888876 4588999999999999999999998764
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.17 E-value=0.031 Score=39.12 Aligned_cols=75 Identities=15% Similarity=0.183 Sum_probs=48.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcc-cCCe---eEEEEeCC--------CCEEEEEeCCHHHHHHHHHhhCCcccC---
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEI---ASVKIPVG--------KGCGFVQFANSLGQIMAINGVGHTMEG--- 117 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i---~~~~~~~~--------~g~~fV~f~~~~~a~~a~~~l~g~~~~--- 117 (155)
....+|.|++||+.++++++.+.++. ++.- ....-..+ -.-|||.|.+.++.......++|..+-
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999887776 5544 22221111 367999999999999999999998652
Q ss_pred C--eEEEEEEee
Q 031682 118 K--FMMVMGMLF 127 (155)
Q Consensus 118 g--~~l~v~~~~ 127 (155)
| .+-.|.++.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 2 345666664
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.11 E-value=0.0004 Score=54.02 Aligned_cols=76 Identities=16% Similarity=0.185 Sum_probs=64.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
++++-|.|+|+...++.|..++.+||.+..|..... .-..-|+|...+.+..|+..++|..+.+..+++.|-....
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 455889999999999999999999999999876443 4556678999999999999999999999999999876543
No 137
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=94.32 E-value=0.12 Score=37.34 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=54.6
Q ss_pred CccCCeeeCCeeEEEeccCC-CCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 2 TEMNGVYCSSRPMRIGAATP-RKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
..|+|..|.|++|+|.+... .......... ......................+++.+++..++...+...|..+|
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (306)
T COG0724 175 EELNGKELEGRPLRVQKAQPASQPRSELSNN----LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG 250 (306)
T ss_pred HHcCCCeECCceeEeeccccccccccccccc----cchhhhccccccccccccccceeeccccccccchhHHHHhccccc
Confidence 56899999999999999764 1111000000 000000011122233346678899999999999999999999999
Q ss_pred CeeEEEEeCC
Q 031682 81 EIASVKIPVG 90 (155)
Q Consensus 81 ~i~~~~~~~~ 90 (155)
.+....+...
T Consensus 251 ~~~~~~~~~~ 260 (306)
T COG0724 251 DIVRASLPPS 260 (306)
T ss_pred cceeeeccCC
Confidence 9877666544
No 138
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.32 E-value=0.48 Score=36.99 Aligned_cols=67 Identities=22% Similarity=0.246 Sum_probs=47.1
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhccc----CCeeEEEEeC---C--CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQY----GEIASVKIPV---G--KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~----g~i~~~~~~~---~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
...|-+++||++.++.++.++|.+. |..+.+.++. + .|-|||.|..+++|..|+.+ |...++-|-|.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 4456778999999999999999732 2333333332 2 69999999999999999975 43344444333
No 139
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.16 E-value=0.026 Score=47.67 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=62.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
...+++|.|.|+..|.+.++.++..+|.+.+..++.. +|.++|.|.+..++.++........+.-..+.|..+.|
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3567999999999999999999999999988876543 79999999999999999888777776666666666444
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.07 E-value=0.05 Score=44.77 Aligned_cols=71 Identities=20% Similarity=0.259 Sum_probs=61.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
-+...++||+|+...+...-+..+...+|-|..+.... |+|..|.......+|+..+.-..++|..+.+.-
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 45678899999999999999999999999888876543 999999999999999999888888888766543
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.86 E-value=0.52 Score=27.44 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=43.2
Q ss_pred CCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 66 NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 66 ~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
.++-++++..+..|+. .++. .++--=||.|.+..+|+++....+|..+-+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999974 3333 34444699999999999999999999887777654
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.33 E-value=0.73 Score=27.27 Aligned_cols=67 Identities=12% Similarity=0.162 Sum_probs=37.7
Q ss_pred eEEEc-CCCCCCCHHHHHHHhcccC-----CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 57 TIFVG-GLDPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 57 ~l~v~-~l~~~~~~~~l~~~f~~~g-----~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
++||. +=-..++..+|-.++...+ .|-.+.+. ..|+||+-.. +.+..++..|++..+.|++++|+.+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34442 2234578888888887654 44455555 4589998874 4788899999999999999998754
No 143
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.90 E-value=0.26 Score=40.13 Aligned_cols=71 Identities=7% Similarity=0.072 Sum_probs=55.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcc--cCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCc--ccCCeEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQ--YGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHT--MEGKFMMVM 123 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~--~~~g~~l~v 123 (155)
..+.|.+.++.||.....++++.+|.. +-++.+|.+...- -=||+|++..+|..|...|.-. +|.|++|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 345677888999999999999999975 5677888775442 3599999999999998877554 577776544
No 144
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=92.18 E-value=0.053 Score=30.08 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=16.2
Q ss_pred CccCCeeeCCeeEEEecc
Q 031682 2 TEMNGVYCSSRPMRIGAA 19 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a 19 (155)
+.|||..++|++|+|.||
T Consensus 39 ~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 39 EQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHTTSEETTEEEEEEEE
T ss_pred HHhCCCEECCcEEEEEEC
Confidence 468999999999999986
No 145
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.78 E-value=0.71 Score=36.75 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGK 118 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g 118 (155)
..+..|+|-.+|..++.-+|-.+...+- .|..++++++ +=..+|.|.+.++|....+.+||..|+.
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3378899999999999999988888764 7888888886 5578999999999999999999998754
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.35 E-value=0.53 Score=38.26 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=34.8
Q ss_pred cCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcc---cCC-eEEEEEEee
Q 031682 79 YGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTM---EGK-FMMVMGMLF 127 (155)
Q Consensus 79 ~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~---~~g-~~l~v~~~~ 127 (155)
.|.-..+.++-| .|||||.|.+.+++..+.++++|+. +.+ +...+.|++
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 344445555544 6999999999999999999999985 443 334455554
No 147
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=91.00 E-value=0.62 Score=31.44 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.6
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
++|||..|+|++|+|+++..+...
T Consensus 94 ~~lng~~i~Gr~l~V~~a~~~~~~ 117 (144)
T PLN03134 94 SEMDGKELNGRHIRVNPANDRPSA 117 (144)
T ss_pred HHcCCCEECCEEEEEEeCCcCCCC
Confidence 579999999999999999876543
No 148
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.99 E-value=1.8 Score=35.62 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=60.7
Q ss_pred CCCcCeEEEcCCCCC-CCHHHHHHHhccc----CCeeEEEEeCC------------------------------------
Q 031682 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPVG------------------------------------ 90 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~i~~~~~~~~------------------------------------ 90 (155)
...+..|-|-||.|+ +...+|..+|..| |.|.+|.|.+.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999997 8889999998876 58888876531
Q ss_pred -----------------CCEEEEEeCCHHHHHHHHHhhCCcccC--CeEEEEEEee
Q 031682 91 -----------------KGCGFVQFANSLGQIMAINGVGHTMEG--KFMMVMGMLF 127 (155)
Q Consensus 91 -----------------~g~~fV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~~~ 127 (155)
.=||.|+|.+.+.|......+.|..+. +..|-++|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 137899999999999999999999885 4556666654
No 149
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=0.18 Score=36.42 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.6
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
|.-||+.+|.||.|+|++|.|..-.
T Consensus 69 iDNMnesEL~GrtirVN~AkP~kik 93 (298)
T KOG0111|consen 69 IDNMNESELFGRTIRVNLAKPEKIK 93 (298)
T ss_pred hhcCchhhhcceeEEEeecCCcccc
Confidence 4579999999999999999997543
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=86.77 E-value=0.85 Score=31.94 Aligned_cols=74 Identities=15% Similarity=-0.006 Sum_probs=54.2
Q ss_pred CeEEEcCCCCCCCH-----HHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCe-EEEEEEeecC
Q 031682 56 TTIFVGGLDPNVTD-----EDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKF-MMVMGMLFRH 129 (155)
Q Consensus 56 ~~l~v~~l~~~~~~-----~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-~l~v~~~~~~ 129 (155)
.++.+.+++..+.. .....+|.+|.+.....+.+..+..-|.|.+.+.|..|...+++..|.|. .+++-|+.+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 34556666665332 23345666666655555666678888999999999999999999999887 8888888765
No 151
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=85.98 E-value=3.5 Score=31.11 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=38.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCCCCEEEEEeCCH
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVGKGCGFVQFANS 101 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~g~~fV~f~~~ 101 (155)
....||++||+.++.-.+|+..+.+.+ ...++...-..|-||.+|.+.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 345699999999999999999998876 445555555578999999764
No 152
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=85.78 E-value=0.31 Score=34.89 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.8
Q ss_pred CCccCCeeeCCeeEEEeccCCCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKS 24 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~ 24 (155)
|+.|+|.+|+|+.|+|..|.....
T Consensus 72 ~damDG~~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 72 LDAMDGAVLDGRELRVQMARYGRP 95 (256)
T ss_pred HHhhcceeeccceeeehhhhcCCC
Confidence 468999999999999999887654
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=85.47 E-value=0.59 Score=35.32 Aligned_cols=76 Identities=22% Similarity=0.198 Sum_probs=57.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC------CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...+++|++++.+.+.+.....++..+|......+.. .++++++.|...+.+..++.......+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 4578899999999998887788888888655554432 2899999999999999999865555666666555554
Q ss_pred ec
Q 031682 127 FR 128 (155)
Q Consensus 127 ~~ 128 (155)
..
T Consensus 166 ~~ 167 (285)
T KOG4210|consen 166 TR 167 (285)
T ss_pred cc
Confidence 43
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=77.25 E-value=0.25 Score=38.53 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=55.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
..+++|++|+..+...++-++|..+|++....+-.. ..+|-+.|....+...|+. ++|..+.-+..++....|
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCc
Confidence 467999999999999999999999999887766433 5677899988888888877 577776644444433333
No 155
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.03 E-value=8.3 Score=30.58 Aligned_cols=56 Identities=14% Similarity=0.110 Sum_probs=45.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCCCCEEEEEeCCHHHHHHHHHh
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVGKGCGFVQFANSLGQIMAING 110 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 110 (155)
-.+.|-|.++|...-.++|-..|+.|+ +-.+|.++-+ -.+|-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-ceeEEeecchHHHHHHhhc
Confidence 356788889999988889999999997 5556665544 5799999999999999874
No 156
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=74.80 E-value=2.8 Score=33.62 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=21.5
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
++.|||..+.||+|+|+|+.....+
T Consensus 77 ~~~lNg~~~~gr~l~v~~~~~~~~~ 101 (435)
T KOG0108|consen 77 IRNLNGAEFNGRKLRVNYASNRKNA 101 (435)
T ss_pred HHhcCCcccCCceEEeecccccchh
Confidence 3579999999999999999887654
No 157
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=73.26 E-value=12 Score=28.38 Aligned_cols=76 Identities=8% Similarity=0.127 Sum_probs=56.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC-------------CEEEEEeCCHHHHHHHHHh----hCCc
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-------------GCGFVQFANSLGQIMAING----VGHT 114 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-------------g~~fV~f~~~~~a~~a~~~----l~g~ 114 (155)
....+.|...|+..+++--.+-..|.+||+|+.+.++.+. ....+.|-+.+.+...... |.-.
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3567789899999999888888889999999999998653 6778888888776654432 2111
Q ss_pred --ccCCeEEEEEEee
Q 031682 115 --MEGKFMMVMGMLF 127 (155)
Q Consensus 115 --~~~g~~l~v~~~~ 127 (155)
.+....|.+.|..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 3566677777765
No 158
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=61.04 E-value=28 Score=21.01 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=23.6
Q ss_pred CeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 81 EIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 81 ~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
.|.++-.+.+ +||-||+=.+..+...|+..+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 4555555444 899999999999999998876653
No 159
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=59.89 E-value=2 Score=31.22 Aligned_cols=61 Identities=33% Similarity=0.447 Sum_probs=44.8
Q ss_pred cCeEEEcC----CCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcc
Q 031682 55 NTTIFVGG----LDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTM 115 (155)
Q Consensus 55 ~~~l~v~~----l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~ 115 (155)
..+++.|+ |...++++.+...|+.-|.+..+++..+ +.++|+.+....+.-.++....+..
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 34444554 5667888888999999998888887654 6788998887777777777666554
No 160
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=52.76 E-value=12 Score=26.50 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.4
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
.-|||+.|.||.|+|.+......+
T Consensus 95 DN~NGiki~gRtirVDHv~~Yk~p 118 (219)
T KOG0126|consen 95 DNLNGIKILGRTIRVDHVSNYKKP 118 (219)
T ss_pred eccCCceecceeEEeeecccccCC
Confidence 458999999999999986665443
No 161
>PLN03213 repressor of silencing 3; Provisional
Probab=51.73 E-value=5.9 Score=32.30 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.6
Q ss_pred CCccCCeeeCCeeEEEeccCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPR 22 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~ 22 (155)
|.+|||..+.||.|+|+.|++.
T Consensus 67 ISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 67 FSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred HHHhcCCeecCceeEEeeccHH
Confidence 4579999999999999999875
No 162
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=50.73 E-value=11 Score=23.26 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhc
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFS 77 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~ 77 (155)
...++|-|.|||..+++++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 5678899999999999999987654
No 163
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=50.23 E-value=22 Score=20.36 Aligned_cols=19 Identities=47% Similarity=0.676 Sum_probs=16.1
Q ss_pred HHHHHHhcccCCeeEEEEe
Q 031682 70 EDLRQPFSQYGEIASVKIP 88 (155)
Q Consensus 70 ~~l~~~f~~~g~i~~~~~~ 88 (155)
.+|+++|+..|+|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999998887664
No 164
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=49.30 E-value=11 Score=26.57 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.1
Q ss_pred CccCCeeeCCeeEEEeccCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKS 24 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~ 24 (155)
..|||..|+|..|+|+.......
T Consensus 65 r~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 65 RYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred hhcCCccccCceEEEEeecCCcc
Confidence 57999999999999999887654
No 165
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.05 E-value=26 Score=22.74 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=22.4
Q ss_pred CCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCC-HHHHHHHH
Q 031682 67 VTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFAN-SLGQIMAI 108 (155)
Q Consensus 67 ~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~-~~~a~~a~ 108 (155)
.+.+.|.+.|+.|..+....+... .|+++|.|.+ ......|+
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 355789999999987654333222 6899999985 34444443
No 166
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=48.40 E-value=28 Score=27.41 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=44.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHhhCCccc
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG--------KGCGFVQFANSLGQIMAINGVGHTME 116 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~--------~g~~fV~f~~~~~a~~a~~~l~g~~~ 116 (155)
..+++.|..||+..++.++.+...++- .+....+... .+.+||.|...++.......++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456788999999999998887777653 2222222211 47889999999887777777777653
No 167
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=48.08 E-value=9.3 Score=29.48 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.2
Q ss_pred CccCCeeeCCeeEEEeccCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKS 24 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~ 24 (155)
.+|+|..+.||+|.|+.|.++-.
T Consensus 154 a~LHgt~VEGRkIEVn~ATarV~ 176 (376)
T KOG0125|consen 154 AELHGTVVEGRKIEVNNATARVH 176 (376)
T ss_pred HHhhcceeeceEEEEeccchhhc
Confidence 47899999999999999998743
No 168
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=41.88 E-value=60 Score=17.75 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=40.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCH----HHHHHHHHh
Q 031682 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANS----LGQIMAING 110 (155)
Q Consensus 57 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~----~~a~~a~~~ 110 (155)
++.|.||.-.-....+++.+...-.|..+.+....+-+-|.|... ++...+++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 456666666666778889999988899999988888899988743 455555543
No 169
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=40.98 E-value=35 Score=25.88 Aligned_cols=35 Identities=11% Similarity=0.015 Sum_probs=24.9
Q ss_pred EEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 94 GFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 94 ~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
|||+|.+..+|..|++.+..... +.+.+..+..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence 69999999999999986555443 345665555443
No 170
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=38.38 E-value=1e+02 Score=20.46 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=14.4
Q ss_pred CccCCeeeCCeeEEEeccC
Q 031682 2 TEMNGVYCSSRPMRIGAAT 20 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~ 20 (155)
..|.|+.+.|+++.|..-.
T Consensus 43 ~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 43 STLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHhhhcccCCCcEEEEECC
Confidence 4567888888888887664
No 171
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=36.32 E-value=96 Score=19.26 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHhcccCC-eeEEEEeCC--CCEEEEEeCCHHHHHHHHHhh
Q 031682 63 LDPNVTDEDLRQPFSQYGE-IASVKIPVG--KGCGFVQFANSLGQIMAINGV 111 (155)
Q Consensus 63 l~~~~~~~~l~~~f~~~g~-i~~~~~~~~--~g~~fV~f~~~~~a~~a~~~l 111 (155)
+.+.++...+...|-..|. -....+-+| +.+|.|+|.+.+.+..|...|
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHH
Confidence 4556777777777776663 223344445 789999999999988887655
No 172
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.80 E-value=60 Score=24.65 Aligned_cols=23 Identities=39% Similarity=0.876 Sum_probs=20.0
Q ss_pred CCHHHHHHHhcccCCeeEEEEeC
Q 031682 67 VTDEDLRQPFSQYGEIASVKIPV 89 (155)
Q Consensus 67 ~~~~~l~~~f~~~g~i~~~~~~~ 89 (155)
.++..|+..|..||.|..+.|+.
T Consensus 173 pse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcc
Confidence 67889999999999999988753
No 173
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.59 E-value=99 Score=25.39 Aligned_cols=58 Identities=10% Similarity=0.091 Sum_probs=42.4
Q ss_pred EcCCCCCCC---HHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEE
Q 031682 60 VGGLDPNVT---DEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMM 121 (155)
Q Consensus 60 v~~l~~~~~---~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l 121 (155)
||||+.-.. ...+.++=.+||.|-.+++.. .-.|...+.+.|+.++.. ++..+.+|+.
T Consensus 37 IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred cccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 677766433 355566666899999887742 357777888999999885 7888888874
No 174
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.85 E-value=42 Score=24.80 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVK 86 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~ 86 (155)
......++|+-|+|...+++.|.++.++.|-+..+.
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 346678899999999999999999999998555443
No 175
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.40 E-value=82 Score=18.21 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=21.2
Q ss_pred CEEEEEeCCHHHHHHHHHhhCCcccCC
Q 031682 92 GCGFVQFANSLGQIMAINGVGHTMEGK 118 (155)
Q Consensus 92 g~~fV~f~~~~~a~~a~~~l~g~~~~g 118 (155)
.+.++.|.+..+|.+|-..|....+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 367999999999999988777655543
No 176
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=28.83 E-value=1.3e+02 Score=18.46 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=26.9
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---CCCEEEEEe
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQF 98 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---~~g~~fV~f 98 (155)
..-+|||+++..+.+.-...+.+..+.-.-+-+-. ..||.|-.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 45589999999888776666655443322222222 257777766
No 177
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=28.78 E-value=1.8e+02 Score=19.23 Aligned_cols=72 Identities=11% Similarity=0.116 Sum_probs=49.0
Q ss_pred CcCeEEEcCCCCC---CCHHHHHHHhcccC-CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 54 SNTTIFVGGLDPN---VTDEDLRQPFSQYG-EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 54 ~~~~l~v~~l~~~---~~~~~l~~~f~~~g-~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
+...|.|+..... .+...++..+..-| .+.++... .+-..|.|.+.++..+|.+.+....-++..|.+..+.
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee--CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 3455666655333 45667788888777 55555443 4588999999999999998887666566666555444
No 178
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=28.14 E-value=16 Score=28.37 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=34.0
Q ss_pred HHHHHHhcccCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 70 EDLRQPFSQYGEIASVKIPV--GKGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 70 ~~l~~~f~~~g~i~~~~~~~--~~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
..+.+++.+.|.+..-.+.+ +-|.+|+..-..+++++++..+.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 45667777777665544433 3689999999999999999988765
No 179
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=26.63 E-value=13 Score=30.66 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=47.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGK 118 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g 118 (155)
...+++++.|+++.++-..|......+-.+..+.+... ...+.|+|...-.-..|+..|++..+..
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 45678999999999999999999888765555544332 4567888876555566666677765543
No 180
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=26.15 E-value=1.2e+02 Score=24.52 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=29.5
Q ss_pred CCCcCeEEEcCCCCC-CCHHHHHHHhccc----CCeeEEEEeC
Q 031682 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQY----GEIASVKIPV 89 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~i~~~~~~~ 89 (155)
-.....|-|-||+|+ +...+|..+|+.| |++..+.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 455678889999997 8888999888865 4777777653
No 181
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.36 E-value=54 Score=16.59 Aligned_cols=15 Identities=13% Similarity=0.505 Sum_probs=9.7
Q ss_pred CCCHHHHHHHhcccC
Q 031682 66 NVTDEDLRQPFSQYG 80 (155)
Q Consensus 66 ~~~~~~l~~~f~~~g 80 (155)
++++..|++.|.+..
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 678899999998754
No 182
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=25.30 E-value=1.1e+02 Score=17.62 Aligned_cols=29 Identities=28% Similarity=0.495 Sum_probs=20.7
Q ss_pred CHHHHHHHhcccCCeeEEEEeCC----CCEEEE
Q 031682 68 TDEDLRQPFSQYGEIASVKIPVG----KGCGFV 96 (155)
Q Consensus 68 ~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV 96 (155)
-+..|.++|-+--.|.++.+... +|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 35567788877778888877653 577776
No 183
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=24.73 E-value=2.3e+02 Score=19.15 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=25.0
Q ss_pred eeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 82 IASVKIPVG-KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 82 i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
|.++.++.. .||.||+-...+++..++..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 556555544 899999999888888888777653
No 184
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.44 E-value=1.7e+02 Score=20.85 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCHHHHHHHhccc-CCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHh
Q 031682 67 VTDEDLRQPFSQY-GEIASVKIPVG-------KGCGFVQFANSLGQIMAING 110 (155)
Q Consensus 67 ~~~~~l~~~f~~~-g~i~~~~~~~~-------~g~~fV~f~~~~~a~~a~~~ 110 (155)
.+++.|..+...- |.+..+.+... +|-.||+|.+.+.+...+..
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 4555444443322 68888776542 68899999999999987764
No 185
>PHA01632 hypothetical protein
Probab=23.23 E-value=89 Score=17.49 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=16.6
Q ss_pred EEEcCCCCCCCHHHHHHHhcc
Q 031682 58 IFVGGLDPNVTDEDLRQPFSQ 78 (155)
Q Consensus 58 l~v~~l~~~~~~~~l~~~f~~ 78 (155)
+.|..+|...++++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 344688999999999987754
No 186
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.58 E-value=1.7e+02 Score=18.45 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=26.4
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---CCCEEEEEeCC
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---GKGCGFVQFAN 100 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---~~g~~fV~f~~ 100 (155)
..-+|||+++..+.+.-...+-+.++.-.-+-+-. ..||.|-.+..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCC
Confidence 45589999888877665554444443322222212 25788777653
No 187
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=22.47 E-value=1.7e+02 Score=16.90 Aligned_cols=57 Identities=7% Similarity=0.008 Sum_probs=36.3
Q ss_pred HHHHHHhcccC-CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 70 EDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 70 ~~l~~~f~~~g-~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
++|.+.|...| .+..+.-+.. -..-||+.....+. .+.++=..+.+..|+|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCCCC
Confidence 35677777777 7777765543 24667777654442 2234555788888888877654
No 188
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=22.14 E-value=2e+02 Score=17.52 Aligned_cols=49 Identities=14% Similarity=0.310 Sum_probs=35.3
Q ss_pred CCCCCCCHHHHHHHhcc-cC-CeeEEEEeC---CCCEEEEEeCCHHHHHHHHHh
Q 031682 62 GLDPNVTDEDLRQPFSQ-YG-EIASVKIPV---GKGCGFVQFANSLGQIMAING 110 (155)
Q Consensus 62 ~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~---~~g~~fV~f~~~~~a~~a~~~ 110 (155)
-.+...+-.++++.++. || +|.++.... +.--|||.+.....|......
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 35778899999998887 67 777775533 235689999887777766544
No 189
>PRK10905 cell division protein DamX; Validated
Probab=21.82 E-value=2.9e+02 Score=21.49 Aligned_cols=63 Identities=13% Similarity=0.028 Sum_probs=37.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEE----eCCC-CEE--EEEeCCHHHHHHHHHhhCCcccCC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKI----PVGK-GCG--FVQFANSLGQIMAINGVGHTMEGK 118 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~----~~~~-g~~--fV~f~~~~~a~~a~~~l~g~~~~g 118 (155)
....++|-|+.+. +++.++.+..++|- ....+ ..++ .|. +-.|.+.++|++|+..|....-..
T Consensus 244 pa~~YTLQL~A~S---s~~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~vQa~ 313 (328)
T PRK10905 244 PSSHYTLQLSSSS---NYDNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPADVQAK 313 (328)
T ss_pred CCCceEEEEEecC---CHHHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHHHHhC
Confidence 3455677776544 45667776666642 21112 1222 333 337899999999999887654333
No 190
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=21.22 E-value=1.5e+02 Score=15.71 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=28.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHH
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSL 102 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~ 102 (155)
..+++.+.....+...|.+++..+|.-..-.+. ....++.+.+..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~--~~~thvI~~~~~ 46 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVS--KKTTHVIVGSDA 46 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecccc--CCceEEEECCCC
Confidence 457777766577889999999999863332222 345566555443
No 191
>PRK11901 hypothetical protein; Reviewed
Probab=20.34 E-value=3.8e+02 Score=20.92 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=39.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC----C-CCEE--EEEeCCHHHHHHHHHhhCCcccCCe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV----G-KGCG--FVQFANSLGQIMAINGVGHTMEGKF 119 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~----~-~g~~--fV~f~~~~~a~~a~~~l~g~~~~g~ 119 (155)
...++|-|..+ -+++.|+.+..+++ +..+.+.. + ..|. +-.|.+.++|..|+..|.......+
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lqa~~ 312 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQAKK 312 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHHhCC
Confidence 45566666543 45777888777765 23333322 2 2444 3378999999999998876544433
Done!