Query 031682
Match_columns 155
No_of_seqs 140 out of 1523
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 05:41:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sjq_A Polypyrimidine tract-bi 99.9 8.3E-22 2.8E-26 125.4 9.3 83 52-134 13-97 (105)
2 2i2y_A Fusion protein consists 99.9 3.6E-22 1.2E-26 135.1 7.6 116 3-130 32-149 (150)
3 4fxv_A ELAV-like protein 1; RN 99.9 1.5E-21 5.2E-26 123.5 9.9 77 53-129 17-99 (99)
4 2yh0_A Splicing factor U2AF 65 99.9 3E-20 1E-24 130.2 14.5 121 3-130 69-195 (198)
5 3r27_A HnRNP L, heterogeneous 99.8 1.2E-20 4.2E-25 118.9 11.0 79 52-130 18-98 (100)
6 2cq1_A PTB-like protein L; RRM 99.8 3.5E-20 1.2E-24 117.5 12.7 81 52-132 12-94 (101)
7 3md3_A Nuclear and cytoplasmic 99.8 1.1E-20 3.9E-25 128.7 11.2 102 2-128 59-166 (166)
8 1why_A Hypothetical protein ri 99.8 3.8E-20 1.3E-24 116.4 12.0 80 52-131 14-95 (97)
9 2cq3_A RNA-binding protein 9; 99.8 7.4E-20 2.5E-24 116.2 13.2 85 49-133 9-97 (103)
10 1x4d_A Matrin 3; structural ge 99.8 1.4E-20 4.9E-25 119.4 9.8 78 53-130 13-93 (102)
11 1wex_A Hypothetical protein (r 99.8 2.5E-20 8.5E-25 118.8 10.7 81 52-132 12-94 (104)
12 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-20 5.6E-25 122.1 9.8 83 52-134 28-112 (119)
13 2cpj_A Non-POU domain-containi 99.8 3.7E-20 1.3E-24 116.8 10.9 79 52-130 12-90 (99)
14 2cqi_A Nucleolysin TIAR; RNA r 99.8 1E-19 3.4E-24 115.6 13.0 83 49-131 9-95 (103)
15 2ytc_A PRE-mRNA-splicing facto 99.8 3.6E-20 1.2E-24 113.6 10.3 79 49-127 6-85 (85)
16 2wbr_A GW182, gawky, LD47780P; 99.8 3.3E-20 1.1E-24 113.5 9.9 74 54-127 6-79 (89)
17 4f25_A Polyadenylate-binding p 99.8 2.1E-20 7.1E-25 121.2 9.6 82 54-135 4-89 (115)
18 4f02_A Polyadenylate-binding p 99.8 3.2E-21 1.1E-25 137.4 6.0 108 2-134 75-186 (213)
19 2g4b_A Splicing factor U2AF 65 99.8 3.9E-20 1.4E-24 126.9 11.1 98 3-127 69-172 (172)
20 3pgw_A U1-A; protein-RNA compl 99.8 1E-19 3.6E-24 134.3 14.0 77 52-128 204-282 (282)
21 1x4a_A Splicing factor, argini 99.8 1.8E-19 6.1E-24 115.6 13.2 82 49-130 16-100 (109)
22 1x4c_A Splicing factor, argini 99.8 1.5E-19 5.1E-24 115.9 12.8 79 52-131 12-95 (108)
23 2cph_A RNA binding motif prote 99.8 9.2E-20 3.1E-24 116.4 11.5 84 49-132 9-100 (107)
24 2do4_A Squamous cell carcinoma 99.8 1.8E-19 6.2E-24 113.8 12.6 83 49-131 11-98 (100)
25 1qm9_A Polypyrimidine tract-bi 99.8 4.3E-20 1.5E-24 129.8 10.5 128 2-129 59-197 (198)
26 2adc_A Polypyrimidine tract-bi 99.8 7.6E-20 2.6E-24 131.6 11.8 128 2-129 90-228 (229)
27 2e5h_A Zinc finger CCHC-type a 99.8 2E-19 6.9E-24 112.2 12.3 77 51-127 12-94 (94)
28 1x5u_A Splicing factor 3B subu 99.8 9.9E-20 3.4E-24 115.9 11.0 83 50-132 10-98 (105)
29 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-19 4.1E-24 114.0 11.1 79 53-131 7-92 (96)
30 2d9p_A Polyadenylate-binding p 99.8 9.2E-20 3.1E-24 115.8 10.6 83 50-132 10-96 (103)
31 1fje_B Nucleolin RBD12, protei 99.8 1E-19 3.4E-24 125.4 11.6 102 3-130 72-175 (175)
32 1b7f_A Protein (SXL-lethal pro 99.8 6.5E-20 2.2E-24 125.3 10.4 98 2-126 63-168 (168)
33 1x4f_A Matrin 3; structural ge 99.8 6.4E-20 2.2E-24 118.0 9.7 80 52-131 22-104 (112)
34 3s8s_A Histone-lysine N-methyl 99.8 8.2E-20 2.8E-24 117.6 10.2 79 53-131 4-88 (110)
35 2m2b_A RNA-binding protein 10; 99.8 2.8E-20 9.7E-25 123.2 8.2 86 48-134 16-113 (131)
36 3smz_A Protein raver-1, ribonu 99.8 3.4E-20 1.2E-24 137.0 9.5 116 2-141 155-276 (284)
37 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.9E-20 2.7E-24 112.5 9.5 78 53-130 4-87 (87)
38 1x4g_A Nucleolysin TIAR; struc 99.8 1.2E-19 4E-24 116.5 10.7 81 52-132 22-102 (109)
39 2cpz_A CUG triplet repeat RNA- 99.8 2E-19 6.7E-24 116.4 11.7 82 50-131 20-107 (115)
40 3md1_A Nuclear and cytoplasmic 99.8 1.1E-19 3.6E-24 111.0 9.7 76 55-130 1-82 (83)
41 2dgo_A Cytotoxic granule-assoc 99.8 2.5E-19 8.4E-24 115.9 11.8 83 50-132 10-98 (115)
42 2la4_A Nuclear and cytoplasmic 99.8 5.6E-20 1.9E-24 116.4 8.5 78 52-129 24-101 (101)
43 2err_A Ataxin-2-binding protei 99.8 1.1E-19 3.7E-24 116.8 9.9 82 49-130 23-108 (109)
44 1p27_B RNA-binding protein 8A; 99.8 1.1E-19 3.7E-24 115.9 9.9 80 51-130 19-104 (106)
45 2cq0_A Eukaryotic translation 99.8 1.6E-19 5.6E-24 114.6 10.6 81 52-132 12-98 (103)
46 2xnq_A Nuclear polyadenylated 99.8 2.3E-19 8E-24 112.9 11.1 80 49-130 16-96 (97)
47 1x4h_A RNA-binding protein 28; 99.8 3.5E-19 1.2E-23 114.4 12.1 83 50-132 10-104 (111)
48 2dnh_A Bruno-like 5, RNA bindi 99.8 2.4E-19 8.3E-24 114.1 11.1 81 52-132 12-100 (105)
49 2dgs_A DAZ-associated protein 99.8 3E-19 1E-23 112.6 11.3 80 52-132 7-92 (99)
50 2cqc_A Arginine/serine-rich sp 99.8 2.3E-19 7.9E-24 112.1 10.8 78 51-128 11-94 (95)
51 2khc_A Testis-specific RNP-typ 99.8 3.3E-19 1.1E-23 115.8 11.7 79 49-127 34-118 (118)
52 2lxi_A RNA-binding protein 10; 99.8 4E-20 1.4E-24 115.2 6.9 77 55-131 1-85 (91)
53 2jvo_A Nucleolar protein 3; nu 99.8 1.5E-19 5.2E-24 115.9 9.8 82 48-131 24-105 (108)
54 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.2E-19 7.6E-24 113.7 10.3 81 52-132 9-95 (102)
55 1whw_A Hypothetical protein ri 99.8 3.8E-19 1.3E-23 112.1 11.2 80 53-132 6-91 (99)
56 1oo0_B CG8781-PA, drosophila Y 99.8 3.1E-19 1E-23 114.6 10.9 81 51-131 22-108 (110)
57 2dnm_A SRP46 splicing factor; 99.8 2.1E-19 7.2E-24 114.1 10.0 81 50-130 8-94 (103)
58 2dnz_A Probable RNA-binding pr 99.8 3.1E-19 1.1E-23 111.6 10.7 81 53-133 3-89 (95)
59 1x5s_A Cold-inducible RNA-bind 99.8 3E-19 1E-23 113.1 10.7 81 52-132 9-95 (102)
60 2kxn_B Transformer-2 protein h 99.8 1.4E-19 4.6E-24 119.7 9.4 82 49-130 40-127 (129)
61 2dgu_A Heterogeneous nuclear r 99.8 4.8E-19 1.6E-23 112.5 11.5 80 52-133 8-87 (103)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.8E-19 9.5E-24 109.6 10.0 75 53-127 5-85 (85)
63 2dnq_A RNA-binding protein 4B; 99.8 2.7E-19 9.1E-24 111.0 10.0 79 52-132 5-83 (90)
64 1whx_A Hypothetical protein ri 99.8 1E-19 3.5E-24 117.3 8.1 78 53-130 8-85 (111)
65 2do0_A HnRNP M, heterogeneous 99.8 6.8E-19 2.3E-23 113.6 12.1 80 51-130 11-95 (114)
66 2x1f_A MRNA 3'-END-processing 99.8 3.8E-19 1.3E-23 111.5 10.4 79 55-133 2-86 (96)
67 2dgt_A RNA-binding protein 30; 99.8 6.3E-19 2.2E-23 109.7 11.3 79 51-131 6-84 (92)
68 1fxl_A Paraneoplastic encephal 99.8 1.5E-19 5.1E-24 123.2 9.2 98 2-126 62-167 (167)
69 4a8x_A RNA-binding protein wit 99.8 4.4E-19 1.5E-23 109.3 10.3 78 53-130 2-86 (88)
70 2lkz_A RNA-binding protein 5; 99.8 1.8E-19 6.2E-24 113.0 8.6 77 52-128 6-94 (95)
71 2ywk_A Putative RNA-binding pr 99.8 2.5E-19 8.5E-24 112.0 9.2 79 50-128 11-94 (95)
72 2la6_A RNA-binding protein FUS 99.8 3.7E-19 1.3E-23 112.2 9.9 79 49-127 7-99 (99)
73 2cpd_A Apobec-1 stimulating pr 99.8 1.4E-18 4.8E-23 109.5 12.6 79 51-131 11-91 (99)
74 2jrs_A RNA-binding protein 39; 99.8 2.9E-19 1E-23 114.6 9.5 82 49-130 20-107 (108)
75 1x5p_A Negative elongation fac 99.8 1.6E-18 5.5E-23 108.9 12.7 79 52-132 12-90 (97)
76 2qfj_A FBP-interacting repress 99.8 1.3E-19 4.3E-24 128.6 8.3 115 2-132 88-208 (216)
77 1x5t_A Splicing factor 3B subu 99.8 3E-19 1E-23 111.9 9.0 80 53-132 3-89 (96)
78 2cq2_A Hypothetical protein LO 99.8 3.1E-19 1.1E-23 115.0 9.3 78 53-130 23-107 (114)
79 2a3j_A U1 small nuclear ribonu 99.8 4E-19 1.4E-23 117.0 10.0 81 52-132 26-113 (127)
80 3ex7_B RNA-binding protein 8A; 99.8 3.9E-19 1.3E-23 116.8 9.9 84 49-132 16-105 (126)
81 2dgv_A HnRNP M, heterogeneous 99.8 3.2E-19 1.1E-23 110.9 8.9 80 52-131 5-88 (92)
82 2cpe_A RNA-binding protein EWS 99.8 7.3E-19 2.5E-23 113.3 10.9 83 50-132 10-106 (113)
83 2kt5_A RNA and export factor-b 99.8 1.5E-18 5.2E-23 113.7 12.5 80 51-130 31-115 (124)
84 1u6f_A Tcubp1, RNA-binding pro 99.8 2.4E-18 8.3E-23 114.8 13.6 85 48-132 35-125 (139)
85 2cq4_A RNA binding motif prote 99.8 3E-19 1E-23 115.4 8.8 79 51-130 21-105 (114)
86 2cqd_A RNA-binding region cont 99.8 1.4E-18 4.9E-23 112.5 11.9 81 49-130 11-97 (116)
87 2dgp_A Bruno-like 4, RNA bindi 99.8 6.3E-19 2.1E-23 112.4 10.1 83 50-132 8-99 (106)
88 2jvr_A Nucleolar protein 3; RN 99.8 4.1E-19 1.4E-23 114.3 9.2 78 53-130 26-106 (111)
89 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-18 4.2E-23 110.7 11.3 79 52-132 12-97 (104)
90 2ghp_A U4/U6 snRNA-associated 99.8 4.1E-19 1.4E-23 131.7 10.4 108 2-130 177-292 (292)
91 2dng_A Eukaryotic translation 99.8 1.2E-18 4E-23 110.7 11.1 80 51-132 11-96 (103)
92 2e5j_A Methenyltetrahydrofolat 99.8 1.6E-18 5.4E-23 108.9 11.6 78 52-130 16-95 (97)
93 2cpi_A CCR4-NOT transcription 99.8 5.4E-19 1.9E-23 113.8 9.6 79 52-130 12-102 (111)
94 2cpf_A RNA binding motif prote 99.8 5.1E-19 1.7E-23 111.3 9.1 79 53-131 3-90 (98)
95 1wf1_A RNA-binding protein RAL 99.8 2.3E-18 7.7E-23 110.6 12.1 75 53-129 25-100 (110)
96 1nu4_A U1A RNA binding domain; 99.8 6.1E-19 2.1E-23 110.6 9.2 81 51-131 4-91 (97)
97 2dnp_A RNA-binding protein 14; 99.8 1.6E-18 5.4E-23 107.4 10.7 77 52-130 6-82 (90)
98 3tyt_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 126.2 8.6 126 1-126 59-204 (205)
99 2fy1_A RNA-binding motif prote 99.8 1E-18 3.5E-23 113.4 9.9 79 53-131 5-88 (116)
100 1l3k_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 121.4 11.3 107 4-132 74-186 (196)
101 2dis_A Unnamed protein product 99.8 1E-18 3.4E-23 112.0 9.6 82 53-134 6-97 (109)
102 2cqh_A IGF-II mRNA-binding pro 99.8 3.8E-19 1.3E-23 110.9 7.2 79 53-132 6-86 (93)
103 1x4b_A Heterogeneous nuclear r 99.8 1.4E-18 4.6E-23 112.6 10.0 80 51-131 23-108 (116)
104 3ulh_A THO complex subunit 4; 99.8 1.6E-18 5.3E-23 110.7 10.1 77 51-127 25-106 (107)
105 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.6E-18 1.2E-22 113.8 12.3 78 49-126 57-140 (140)
106 2e44_A Insulin-like growth fac 99.8 1.9E-18 6.4E-23 108.3 10.1 80 52-131 12-94 (96)
107 2kvi_A Nuclear polyadenylated 99.8 8.2E-19 2.8E-23 110.1 8.4 79 52-132 7-86 (96)
108 2cqp_A RNA-binding protein 12; 99.8 7.1E-19 2.4E-23 110.6 8.1 79 52-130 12-96 (98)
109 2hvz_A Splicing factor, argini 99.8 5.1E-19 1.7E-23 111.9 7.4 77 56-132 1-78 (101)
110 2dh8_A DAZ-associated protein 99.8 1E-18 3.4E-23 111.3 8.8 82 50-132 11-98 (105)
111 3p5t_L Cleavage and polyadenyl 99.8 1.1E-19 3.9E-24 112.7 4.2 76 56-131 2-85 (90)
112 1x5o_A RNA binding motif, sing 99.8 4.7E-18 1.6E-22 109.7 12.0 81 50-130 20-113 (114)
113 2dhg_A TRNA selenocysteine ass 99.8 7.1E-19 2.4E-23 111.8 7.8 81 52-132 6-93 (104)
114 2rs2_A Musashi-1, RNA-binding 99.8 2.5E-18 8.7E-23 110.3 10.3 82 49-131 19-106 (109)
115 3lqv_A PRE-mRNA branch site pr 99.8 1.7E-18 5.7E-23 112.0 9.4 77 53-129 6-85 (115)
116 2dgw_A Probable RNA-binding pr 99.8 4.2E-18 1.4E-22 105.7 10.8 78 52-131 7-89 (91)
117 3ucg_A Polyadenylate-binding p 99.8 2.3E-18 7.7E-23 106.3 9.4 76 54-130 5-86 (89)
118 1p1t_A Cleavage stimulation fa 99.8 2.7E-19 9.1E-24 113.7 5.3 82 52-133 5-92 (104)
119 2cqg_A TDP-43, TAR DNA-binding 99.8 6.3E-18 2.1E-22 107.2 11.7 82 49-132 9-96 (103)
120 2j76_E EIF-4B, EIF4B, eukaryot 99.8 6E-19 2.1E-23 111.5 6.8 80 49-130 13-99 (100)
121 3ns6_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 112.4 5.9 77 53-129 4-93 (100)
122 2div_A TRNA selenocysteine ass 99.8 1.6E-18 5.6E-23 109.1 8.7 78 53-130 7-95 (99)
123 2kn4_A Immunoglobulin G-bindin 99.8 5.3E-18 1.8E-22 115.4 11.8 80 51-130 66-151 (158)
124 3n9u_C Cleavage and polyadenyl 99.8 8.7E-19 3E-23 119.3 7.9 80 54-133 54-141 (156)
125 2e5i_A Heterogeneous nuclear r 99.8 1.2E-17 4.2E-22 109.2 13.0 77 54-130 24-103 (124)
126 2lea_A Serine/arginine-rich sp 99.8 8.2E-19 2.8E-23 116.8 7.5 82 49-130 41-128 (135)
127 1s79_A Lupus LA protein; RRM, 99.8 1.6E-18 5.3E-23 110.3 8.4 76 52-128 8-88 (103)
128 2cpx_A Hypothetical protein FL 99.8 5.3E-18 1.8E-22 109.5 11.0 81 52-132 22-108 (115)
129 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.7E-18 1.6E-22 115.5 11.1 79 52-130 36-120 (156)
130 1wg1_A KIAA1579 protein, homol 99.8 2.2E-18 7.4E-23 106.5 8.6 77 53-130 3-79 (88)
131 2fc9_A NCL protein; structure 99.8 7.1E-18 2.4E-22 106.6 11.2 81 51-131 11-93 (101)
132 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.5E-18 1.2E-22 117.3 10.3 82 50-131 67-154 (165)
133 3s7r_A Heterogeneous nuclear r 99.8 5.6E-18 1.9E-22 104.2 9.9 75 51-126 7-87 (87)
134 1wg5_A Heterogeneous nuclear r 99.8 8.4E-18 2.9E-22 107.0 10.8 79 51-130 11-95 (104)
135 2fc8_A NCL protein; structure 99.8 8.1E-18 2.8E-22 106.5 10.3 82 51-132 11-95 (102)
136 1sjr_A Polypyrimidine tract-bi 99.8 5.1E-18 1.7E-22 115.7 9.9 80 51-130 42-125 (164)
137 2cpy_A RNA-binding protein 12; 99.8 5E-18 1.7E-22 109.7 9.4 79 52-131 12-96 (114)
138 2nlw_A Eukaryotic translation 99.8 5.9E-18 2E-22 107.9 9.6 78 52-129 12-100 (105)
139 2bz2_A Negative elongation fac 99.8 5.2E-18 1.8E-22 110.8 9.3 80 52-133 36-115 (121)
140 1x4e_A RNA binding motif, sing 99.8 7.3E-19 2.5E-23 107.8 4.8 75 53-127 3-83 (85)
141 3beg_B Splicing factor, argini 99.8 2.8E-18 9.5E-23 111.2 7.6 76 53-129 14-94 (115)
142 3zzy_A Polypyrimidine tract-bi 99.7 8.5E-18 2.9E-22 110.6 9.7 79 52-130 25-107 (130)
143 2ek1_A RNA-binding protein 12; 99.7 1.3E-18 4.3E-23 108.8 5.5 76 53-128 13-94 (95)
144 2db1_A Heterogeneous nuclear r 99.7 5.4E-18 1.9E-22 110.3 8.6 78 52-130 14-99 (118)
145 3nmr_A Cugbp ELAV-like family 99.7 3.2E-18 1.1E-22 117.5 7.9 100 2-127 65-175 (175)
146 2cjk_A Nuclear polyadenylated 99.7 8.1E-19 2.8E-23 119.8 4.6 96 6-129 65-166 (167)
147 1wel_A RNA-binding protein 12; 99.7 2.6E-18 8.8E-23 112.7 6.6 78 52-130 22-105 (124)
148 1fjc_A Nucleolin RBD2, protein 99.7 9.4E-18 3.2E-22 105.0 9.0 80 51-131 12-93 (96)
149 1fj7_A Nucleolin RBD1, protein 99.7 2.1E-18 7.3E-23 109.0 5.7 78 52-131 14-97 (101)
150 2diu_A KIAA0430 protein; struc 99.7 1.1E-17 3.9E-22 103.2 8.7 77 53-133 6-88 (96)
151 3d2w_A TAR DNA-binding protein 99.7 1.8E-17 6.1E-22 102.7 9.5 77 51-131 7-86 (89)
152 2hzc_A Splicing factor U2AF 65 99.7 1.4E-17 4.9E-22 102.3 9.1 72 53-125 4-86 (87)
153 2mss_A Protein (musashi1); RNA 99.7 3.9E-18 1.3E-22 102.1 6.2 69 57-126 1-75 (75)
154 2jwn_A Embryonic polyadenylate 99.7 8.2E-18 2.8E-22 110.1 8.1 77 53-130 34-116 (124)
155 3tyt_A Heterogeneous nuclear r 99.7 2.1E-17 7.2E-22 117.2 10.7 76 54-129 3-80 (205)
156 2hgl_A HNRPF protein, heteroge 99.7 6.9E-18 2.4E-22 112.3 7.2 80 49-129 38-125 (136)
157 2ki2_A SS-DNA binding protein 99.7 1.6E-18 5.4E-23 107.3 3.6 75 56-131 2-82 (90)
158 3u1l_A PRE-mRNA-splicing facto 99.7 7.5E-18 2.6E-22 121.6 7.4 83 52-134 131-234 (240)
159 2krb_A Eukaryotic translation 99.7 5.6E-18 1.9E-22 103.0 5.7 69 55-123 1-80 (81)
160 2e5g_A U6 snRNA-specific termi 99.7 3.7E-17 1.3E-21 102.1 9.5 77 53-130 6-83 (94)
161 2dnn_A RNA-binding protein 12; 99.7 2.8E-17 9.7E-22 105.4 9.1 76 52-129 13-93 (109)
162 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.9E-18 2.4E-22 101.4 5.8 70 56-126 1-76 (77)
163 1wez_A HnRNP H', FTP-3, hetero 99.7 2.8E-17 9.5E-22 104.3 8.7 77 52-130 12-93 (102)
164 3smz_A Protein raver-1, ribonu 99.7 3.6E-17 1.2E-21 120.8 10.7 96 2-130 75-176 (284)
165 3q2s_C Cleavage and polyadenyl 99.7 1.5E-17 5.1E-22 119.8 7.3 77 54-130 67-151 (229)
166 4f02_A Polyadenylate-binding p 99.7 6.2E-17 2.1E-21 115.2 10.0 78 53-130 13-96 (213)
167 2lmi_A GRSF-1, G-rich sequence 99.7 9.3E-18 3.2E-22 107.3 5.1 78 52-130 8-93 (107)
168 2f3j_A RNA and export factor b 99.7 6.4E-17 2.2E-21 112.2 9.6 79 52-130 85-168 (177)
169 3egn_A RNA-binding protein 40; 99.7 3.7E-17 1.3E-21 109.5 8.1 81 52-132 42-133 (143)
170 2lcw_A RNA-binding protein FUS 99.5 1.2E-18 4.2E-23 112.8 0.0 81 52-132 4-98 (116)
171 1wf0_A TDP-43, TAR DNA-binding 99.7 4.9E-17 1.7E-21 100.2 7.0 78 53-132 3-81 (88)
172 2xs2_A Deleted in azoospermia- 99.7 3E-17 1E-21 103.9 6.1 77 52-130 6-87 (102)
173 1iqt_A AUF1, heterogeneous nuc 99.7 2.5E-17 8.4E-22 98.5 5.2 69 57-126 1-75 (75)
174 3sde_A Paraspeckle component 1 99.7 7.7E-17 2.6E-21 118.0 8.5 95 2-129 76-179 (261)
175 2ghp_A U4/U6 snRNA-associated 99.7 2.4E-16 8.2E-21 116.8 11.2 94 3-130 99-198 (292)
176 1fxl_A Paraneoplastic encephal 99.7 2.7E-16 9.1E-21 106.9 10.3 76 55-130 2-83 (167)
177 3pgw_S U1-70K; protein-RNA com 99.7 2.6E-16 8.9E-21 122.9 11.5 79 53-131 100-184 (437)
178 2hgm_A HNRPF protein, heteroge 99.7 6.6E-17 2.3E-21 106.1 6.5 77 51-129 38-121 (126)
179 2hgn_A Heterogeneous nuclear r 99.7 2.7E-17 9.2E-22 109.8 4.7 79 51-131 42-125 (139)
180 1b7f_A Protein (SXL-lethal pro 99.7 3E-16 1E-20 107.0 9.8 77 54-130 2-84 (168)
181 2dha_A FLJ20171 protein; RRM d 99.7 5.6E-17 1.9E-21 106.2 5.4 81 53-134 21-110 (123)
182 3sde_A Paraspeckle component 1 99.7 5.7E-16 1.9E-20 113.4 11.2 78 52-129 19-96 (261)
183 2adc_A Polypyrimidine tract-bi 99.7 3.8E-16 1.3E-20 112.2 9.2 78 52-129 31-110 (229)
184 3pgw_A U1-A; protein-RNA compl 99.7 9.3E-16 3.2E-20 113.0 11.2 80 51-130 5-91 (282)
185 3md3_A Nuclear and cytoplasmic 99.7 5.3E-16 1.8E-20 105.4 8.8 75 56-130 1-80 (166)
186 1l3k_A Heterogeneous nuclear r 99.7 6.8E-16 2.3E-20 107.8 9.6 80 50-130 8-93 (196)
187 2dit_A HIV TAT specific factor 99.6 4.7E-15 1.6E-19 95.4 11.4 79 52-130 12-103 (112)
188 1qm9_A Polypyrimidine tract-bi 99.6 8.1E-16 2.8E-20 107.8 7.7 76 54-129 2-79 (198)
189 2pe8_A Splicing factor 45; RRM 99.6 3.8E-15 1.3E-19 94.8 9.6 76 53-128 6-93 (105)
190 2qfj_A FBP-interacting repress 99.6 2.4E-15 8.1E-20 106.5 9.5 78 53-130 26-109 (216)
191 2g4b_A Splicing factor U2AF 65 99.6 3.6E-15 1.2E-19 102.0 9.6 75 54-129 3-88 (172)
192 2dnl_A Cytoplasmic polyadenyla 99.6 3.2E-15 1.1E-19 96.4 8.3 72 53-127 6-86 (114)
193 2yh0_A Splicing factor U2AF 65 99.6 5E-15 1.7E-19 103.5 9.5 75 54-129 3-88 (198)
194 2voo_A Lupus LA protein; RNA-b 99.6 4.5E-15 1.5E-19 104.2 9.0 74 54-128 108-186 (193)
195 2j8a_A Histone-lysine N-methyl 99.6 2.3E-15 7.8E-20 98.1 6.6 73 56-128 3-95 (136)
196 3nmr_A Cugbp ELAV-like family 99.6 9.4E-15 3.2E-19 100.0 8.8 77 54-130 2-89 (175)
197 3tht_A Alkylated DNA repair pr 99.6 9.7E-15 3.3E-19 110.5 9.1 79 51-129 14-99 (345)
198 2cjk_A Nuclear polyadenylated 99.6 1.3E-14 4.3E-19 98.8 8.1 74 54-129 2-81 (167)
199 1fje_B Nucleolin RBD12, protei 99.5 4.2E-14 1.4E-18 97.1 10.0 80 51-131 9-93 (175)
200 3v4m_A Splicing factor U2AF 65 99.5 7.3E-14 2.5E-18 88.8 8.2 77 53-129 3-97 (105)
201 1jmt_A Splicing factor U2AF 35 99.5 1.2E-14 4.3E-19 92.3 3.4 67 60-126 20-103 (104)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 9.2E-13 3.1E-17 83.0 10.7 65 65-131 27-92 (100)
203 3ue2_A Poly(U)-binding-splicin 99.5 3.4E-13 1.2E-17 87.4 8.5 75 54-128 19-108 (118)
204 3s6e_A RNA-binding protein 39; 99.5 7E-13 2.4E-17 85.4 9.9 76 54-129 6-93 (114)
205 1owx_A Lupus LA protein, SS-B, 99.3 1.6E-11 5.4E-16 79.5 9.3 80 49-128 12-95 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.3 1.7E-11 5.9E-16 74.9 8.7 76 53-131 5-88 (91)
207 1ufw_A Synaptojanin 2; RNP dom 99.1 2.8E-10 9.7E-15 69.9 6.7 72 53-127 13-93 (95)
208 3dxb_A Thioredoxin N-terminall 99.0 9.8E-10 3.4E-14 78.2 6.6 62 67-128 141-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.9 1.3E-08 4.5E-13 63.8 9.7 72 54-125 20-96 (117)
210 1wey_A Calcipressin 1; structu 98.3 3.7E-06 1.3E-10 52.4 7.6 77 54-130 4-85 (104)
211 2dhx_A Poly (ADP-ribose) polym 97.9 0.00034 1.2E-08 43.4 10.2 73 53-128 6-83 (104)
212 4f25_A Polyadenylate-binding p 97.8 4.1E-06 1.4E-10 53.4 1.1 51 2-71 63-113 (115)
213 1whv_A Poly(A)-specific ribonu 97.7 0.0007 2.4E-08 41.6 9.2 56 53-111 14-69 (100)
214 1wwh_A Nucleoporin 35, nucleop 97.7 0.00026 9.1E-09 45.2 7.6 73 52-126 21-94 (119)
215 1uw4_A UPF3X; nonsense mediate 97.6 0.00035 1.2E-08 42.6 7.1 61 56-116 2-70 (91)
216 3p3d_A Nucleoporin 53; structu 97.2 0.00043 1.5E-08 44.9 3.9 73 55-129 7-99 (132)
217 3ctr_A Poly(A)-specific ribonu 97.1 0.00096 3.3E-08 41.1 4.8 55 55-112 6-60 (101)
218 2hvz_A Splicing factor, argini 96.9 0.00015 5.1E-09 44.7 0.4 46 2-64 55-100 (101)
219 2l08_A Regulator of nonsense t 96.7 0.003 1E-07 38.8 4.8 64 53-116 7-78 (97)
220 3pq1_A Poly(A) RNA polymerase; 96.5 0.0018 6.3E-08 50.7 3.5 55 55-110 53-108 (464)
221 2i2y_A Fusion protein consists 95.6 0.0034 1.2E-07 41.4 1.0 38 91-129 13-51 (150)
222 3lqv_A PRE-mRNA branch site pr 95.4 0.00052 1.8E-08 43.2 -3.2 44 2-80 65-108 (115)
223 2dgu_A Heterogeneous nuclear r 95.0 0.028 9.5E-07 34.3 3.8 24 2-25 63-86 (103)
224 2diu_A KIAA0430 protein; struc 94.6 0.0064 2.2E-07 37.2 0.1 25 1-25 63-87 (96)
225 1x5t_A Splicing factor 3B subu 94.4 0.026 8.9E-07 33.8 2.6 24 2-25 66-89 (96)
226 2dgo_A Cytotoxic granule-assoc 94.4 0.044 1.5E-06 34.1 3.7 24 2-25 75-98 (115)
227 2kn4_A Immunoglobulin G-bindin 94.1 0.037 1.3E-06 36.4 3.1 24 91-114 13-36 (158)
228 2cqh_A IGF-II mRNA-binding pro 93.8 0.03 1E-06 33.4 1.9 24 2-25 62-86 (93)
229 2dgt_A RNA-binding protein 30; 93.6 0.042 1.4E-06 32.7 2.4 24 2-25 62-85 (92)
230 2dnp_A RNA-binding protein 14; 93.4 0.035 1.2E-06 32.9 1.9 24 2-25 61-84 (90)
231 2fy1_A RNA-binding motif prote 93.1 0.073 2.5E-06 33.3 3.1 24 2-25 66-89 (116)
232 2dnq_A RNA-binding protein 4B; 93.0 0.035 1.2E-06 33.0 1.3 24 2-25 60-83 (90)
233 1whw_A Hypothetical protein ri 92.9 0.056 1.9E-06 32.6 2.2 24 2-25 68-91 (99)
234 2dnz_A Probable RNA-binding pr 92.5 0.037 1.3E-06 33.1 1.0 24 2-25 65-88 (95)
235 1x4c_A Splicing factor, argini 92.5 0.1 3.4E-06 32.1 3.0 24 2-25 68-96 (108)
236 3d45_A Poly(A)-specific ribonu 91.6 1 3.5E-05 35.7 8.5 57 54-113 439-495 (507)
237 2x1f_A MRNA 3'-END-processing 91.3 0.056 1.9E-06 32.4 0.8 24 2-25 62-85 (96)
238 1wg1_A KIAA1579 protein, homol 91.3 0.07 2.4E-06 31.5 1.2 22 2-23 58-79 (88)
239 2dhg_A TRNA selenocysteine ass 91.3 0.058 2E-06 32.8 0.9 24 2-25 69-93 (104)
240 2wbr_A GW182, gawky, LD47780P; 91.3 0.062 2.1E-06 32.4 0.9 19 2-20 61-79 (89)
241 2do0_A HnRNP M, heterogeneous 91.0 0.22 7.4E-06 30.7 3.4 24 2-25 74-97 (114)
242 2e5g_A U6 snRNA-specific termi 90.9 0.13 4.5E-06 30.6 2.2 22 4-25 64-85 (94)
243 2cqd_A RNA-binding region cont 90.6 0.42 1.4E-05 29.5 4.4 24 1-25 76-99 (116)
244 2lcw_A RNA-binding protein FUS 90.0 0.049 1.7E-06 34.0 0.0 25 1-25 74-98 (116)
245 2dis_A Unnamed protein product 90.5 0.21 7.3E-06 30.4 3.0 24 2-25 70-95 (109)
246 3ex7_B RNA-binding protein 8A; 90.5 0.041 1.4E-06 34.8 -0.4 24 2-25 82-105 (126)
247 3s8s_A Histone-lysine N-methyl 90.0 0.083 2.8E-06 32.9 0.8 22 2-23 66-87 (110)
248 2kvi_A Nuclear polyadenylated 89.9 0.03 1E-06 33.8 -1.4 24 2-25 63-86 (96)
249 2ki2_A SS-DNA binding protein 89.2 0.048 1.7E-06 32.2 -0.8 24 2-25 60-83 (90)
250 1p1t_A Cleavage stimulation fa 89.1 0.095 3.2E-06 31.8 0.5 24 2-25 68-91 (104)
251 3s6e_A RNA-binding protein 39; 89.0 0.085 2.9E-06 33.2 0.2 22 1-22 72-93 (114)
252 1h2v_Z 20 kDa nuclear CAP bind 87.6 0.21 7.1E-06 32.8 1.5 24 2-25 99-122 (156)
253 3zzy_A Polypyrimidine tract-bi 87.4 0.17 5.9E-06 32.6 0.9 23 1-23 83-107 (130)
254 1whx_A Hypothetical protein ri 86.6 0.094 3.2E-06 32.6 -0.7 22 2-23 64-85 (111)
255 2e5i_A Heterogeneous nuclear r 85.5 0.21 7.1E-06 31.9 0.5 24 1-24 79-104 (124)
256 2m2b_A RNA-binding protein 10; 85.5 0.2 6.7E-06 31.9 0.4 24 2-25 84-111 (131)
257 1sjr_A Polypyrimidine tract-bi 83.7 0.27 9.2E-06 33.0 0.5 22 2-23 102-125 (164)
258 3pgw_S U1-70K; protein-RNA com 82.1 1.4 4.7E-05 34.2 4.0 25 1-25 161-185 (437)
259 1wex_A Hypothetical protein (r 79.9 0.4 1.4E-05 29.4 0.2 23 3-25 70-94 (104)
260 2cpy_A RNA-binding protein 12; 77.3 0.39 1.3E-05 29.7 -0.4 20 4-23 76-95 (114)
261 3q2s_C Cleavage and polyadenyl 77.1 0.73 2.5E-05 32.4 0.9 22 1-22 129-150 (229)
262 2db1_A Heterogeneous nuclear r 76.7 1.3 4.4E-05 27.5 2.0 19 4-22 80-98 (118)
263 3beg_B Splicing factor, argini 75.7 0.71 2.4E-05 28.6 0.5 24 1-24 68-96 (115)
264 1sjq_A Polypyrimidine tract-bi 74.3 1.7 6E-05 26.7 2.0 21 5-25 75-95 (105)
265 1wel_A RNA-binding protein 12; 67.6 1.8 6.1E-05 27.0 1.0 20 3-22 85-104 (124)
266 2g0c_A ATP-dependent RNA helic 65.8 15 0.00053 20.5 5.1 68 57-127 2-75 (76)
267 2j8a_A Histone-lysine N-methyl 63.0 5.5 0.00019 25.7 2.6 19 3-21 77-95 (136)
268 3fry_A Probable copper-exporti 51.3 27 0.00094 18.8 5.2 56 54-110 5-60 (73)
269 3h7h_B Transcription elongatio 42.2 44 0.0015 20.4 4.2 34 81-114 40-74 (106)
270 4a4j_A Pacszia, cation-transpo 35.2 50 0.0017 17.2 4.5 54 56-109 4-60 (69)
271 3lpe_A Putative transcription 32.8 76 0.0026 18.5 6.2 34 81-114 39-73 (92)
272 3ts2_A Protein LIN-28 homolog 31.3 10 0.00036 24.7 0.1 27 71-99 3-29 (148)
273 4e8u_A Putative uncharacterize 28.4 1.3E+02 0.0046 20.0 7.0 52 57-108 14-80 (172)
274 2exu_A Transcription initiatio 24.9 92 0.0031 21.4 3.9 34 81-114 138-172 (200)
275 3dxs_X Copper-transporting ATP 21.6 1E+02 0.0034 16.2 5.8 55 56-110 4-62 (74)
276 3swz_A Steroid 17-alpha-hydrox 20.5 1.8E+02 0.0061 21.9 5.3 58 59-120 18-79 (494)
No 1
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.3e-22 Score=125.39 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=76.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCC--cccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGH--TMEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~~~~~ 129 (155)
+...++|||+|||+++++++|+++|++||.|.++.++.+||||||+|.+.++|..|++.+++ ..+.|++|+|.|++++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 46789999999999999999999999999999999999999999999999999999998864 6899999999999987
Q ss_pred CCchh
Q 031682 130 QMTQA 134 (155)
Q Consensus 130 ~~~~~ 134 (155)
.....
T Consensus 93 ~~~~~ 97 (105)
T 1sjq_A 93 ELKTD 97 (105)
T ss_dssp SCCCT
T ss_pred CCCcc
Confidence 65443
No 2
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=3.6e-22 Score=135.15 Aligned_cols=116 Identities=16% Similarity=0.183 Sum_probs=93.3
Q ss_pred cc-CCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 3 EM-NGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 3 ~m-nG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
+| ||..++| ++++.++..+...... ................++|||+|||+.+++++|+++|++||.
T Consensus 32 ~~~ng~~~~G-~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~ 99 (150)
T 2i2y_A 32 QYANDNGVDG-EWTYDDATKTFTVTEG-----------SHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGP 99 (150)
T ss_dssp HHHHHHTCCC-EEEEETTTTEEEEECS-----------SSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSC
T ss_pred HHhcCCCCCC-ceecccccCccccccc-----------cccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 45 8888899 8899987754221100 000111122334467899999999999999999999999999
Q ss_pred eeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 82 IASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 82 i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
|..+.++.+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|+.++.
T Consensus 100 i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 100 LRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999987 9999999999999999999999999999999999998764
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=123.45 Aligned_cols=77 Identities=26% Similarity=0.315 Sum_probs=72.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
..+++|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|+|..++|++|+|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999764 689999999999999999999999999999999999
Q ss_pred ecC
Q 031682 127 FRH 129 (155)
Q Consensus 127 ~~~ 129 (155)
+|.
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 863
No 4
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.85 E-value=3e-20 Score=130.22 Aligned_cols=121 Identities=14% Similarity=0.222 Sum_probs=96.4
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 82 (155)
+|||..|+|++|+|.++.............. ...+...........++|||+|||+.+++++|+++|++||.|
T Consensus 69 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v 141 (198)
T 2yh0_A 69 AFDGIIFQGQSLKIRRPHDYQPLPGMSENPS-------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL 141 (198)
T ss_dssp GGTTEEETTEEEEEECCCCCCCCCCSSSCSS-------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE
T ss_pred HhcCCEEcCceEEEeCCCCCCCCCCCcCCCc-------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc
Confidence 6899999999999999887643321111000 000011112233567999999999999999999999999999
Q ss_pred eEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 83 ASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 83 ~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
..+.+..+ +|+|||+|.+.++|..|+..|+|..++|++|+|.|+.++.
T Consensus 142 ~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 142 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred cEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999765 6899999999999999999999999999999999998765
No 5
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=118.89 Aligned_cols=79 Identities=19% Similarity=0.292 Sum_probs=73.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcc--cCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTM--EGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~--~~g~~l~v~~~~~~ 129 (155)
.+++.+|||+|||+++++++|+++|++||.|.++.+.++||+|||+|.+.++|..|+..|++.. +.|++|+|.|++++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 3567899999999999999999999999999999999999999999999999999999999875 78999999999876
Q ss_pred C
Q 031682 130 Q 130 (155)
Q Consensus 130 ~ 130 (155)
.
T Consensus 98 ~ 98 (100)
T 3r27_A 98 K 98 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 6
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.5e-20 Score=117.49 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=74.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhh--CCcccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV--GHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l--~g~~~~g~~l~v~~~~~~ 129 (155)
..+.++|||+|||+.+++++|+++|++||.|..+.+..++|||||+|.+.++|..|+..| ++..+.|++|+|.|++++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 356789999999999999999999999999999999999999999999999999999977 467899999999999976
Q ss_pred CCc
Q 031682 130 QMT 132 (155)
Q Consensus 130 ~~~ 132 (155)
...
T Consensus 92 ~~~ 94 (101)
T 2cq1_A 92 ELK 94 (101)
T ss_dssp SCC
T ss_pred cCc
Confidence 544
No 7
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-20 Score=128.68 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=91.3
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
+.|||..+.|++|+|.++.+.... ......+|||+|||..+++++|+++|++||.
T Consensus 59 ~~l~~~~~~g~~i~v~~~~~~~~~-------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 113 (166)
T 3md3_A 59 QTLNGKQIENNIVKINWAFQSQQS-------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPS 113 (166)
T ss_dssp HHHTTCEETTEECEEEECCCCCCC-------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTT
T ss_pred HHcCCCccCCCeeEEEEcCCCCCC-------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCC
Confidence 468999999999999999765422 2245779999999999999999999999999
Q ss_pred eeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 82 IASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 82 i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.|+++
T Consensus 114 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 114 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999755 68999999999999999999999999999999999864
No 8
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.8e-20 Score=116.38 Aligned_cols=80 Identities=19% Similarity=0.308 Sum_probs=75.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccC--CeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEG--KFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~--g~~l~v~~~~~~ 129 (155)
....++|||+|||+.+++++|+++|++||.|..+.+..++|||||+|.+.++|++|+..|++..+. |++|+|.|+.++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 356789999999999999999999999999999999999999999999999999999999999999 999999999987
Q ss_pred CC
Q 031682 130 QM 131 (155)
Q Consensus 130 ~~ 131 (155)
+.
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 9
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-20 Score=116.20 Aligned_cols=85 Identities=32% Similarity=0.375 Sum_probs=77.6
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|++..++|++|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 344567899999999999999999999999999999999876 7999999999999999999999999999999999
Q ss_pred EeecCCCch
Q 031682 125 MLFRHQMTQ 133 (155)
Q Consensus 125 ~~~~~~~~~ 133 (155)
|+.++....
T Consensus 89 ~a~~~~~~~ 97 (103)
T 2cq3_A 89 NATARVMTN 97 (103)
T ss_dssp ECCSSCCCC
T ss_pred EcccCCCCC
Confidence 999876443
No 10
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.4e-20 Score=119.37 Aligned_cols=78 Identities=12% Similarity=0.065 Sum_probs=72.6
Q ss_pred CCcCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCc--ccCCeEEEEEEeecC
Q 031682 53 SSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHT--MEGKFMMVMGMLFRH 129 (155)
Q Consensus 53 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~~~~~ 129 (155)
.+.++|||+|||+ .+++++|+++|++||.|.++.++.++|+|||+|.+.++|..|++.|++. .+.|++|+|.|+++.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3678999999999 9999999999999999999999999999999999999999999998865 599999999999864
Q ss_pred C
Q 031682 130 Q 130 (155)
Q Consensus 130 ~ 130 (155)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 11
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=118.79 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=74.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCc--ccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHT--MEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~--~~~g~~l~v~~~~~~ 129 (155)
..+..+|||+|||+.+++++|+++|++||.|..+.+..+||||||+|.+.++|..|+..|++. .+.|++|+|.|+.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 356789999999999999999999999999999999999999999999999999999988764 599999999999876
Q ss_pred CCc
Q 031682 130 QMT 132 (155)
Q Consensus 130 ~~~ 132 (155)
...
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 543
No 12
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=122.06 Aligned_cols=83 Identities=11% Similarity=0.149 Sum_probs=75.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCC--cccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGH--TMEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~~~~~ 129 (155)
..+..+|||+|||+++++++|+++|++||.|.++.++.++|||||+|.+.++|..|+..+++ ..+.|++|+|.|++++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 35678999999999999999999999999999999999999999999999999999998874 5899999999999987
Q ss_pred CCchh
Q 031682 130 QMTQA 134 (155)
Q Consensus 130 ~~~~~ 134 (155)
.....
T Consensus 108 ~~~~~ 112 (119)
T 2ad9_A 108 ELKTD 112 (119)
T ss_dssp SCCCC
T ss_pred CCCcc
Confidence 65543
No 13
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.7e-20 Score=116.81 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=75.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
....++|||+|||+.+++++|+++|++||.|..+.+..++|||||+|.+.++|.+|+..|+|..+.|++|+|.|+.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999999998764
No 14
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-19 Score=115.58 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=76.2
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|++..+.|++|+|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 344567899999999999999999999999999999999874 7999999999999999999999999999999999
Q ss_pred EeecCCC
Q 031682 125 MLFRHQM 131 (155)
Q Consensus 125 ~~~~~~~ 131 (155)
|+.++..
T Consensus 89 ~a~~~~~ 95 (103)
T 2cqi_A 89 WATTPSS 95 (103)
T ss_dssp ECCCTTC
T ss_pred ECCCCcc
Confidence 9987653
No 15
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.6e-20 Score=113.60 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=73.9
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhh-CCcccCCeEEEEEEee
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV-GHTMEGKFMMVMGMLF 127 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~~~ 127 (155)
++.+...++|||+|||..+++++|+++|++||.|..+.+..++|+|||+|.+.++|..|+..| ++..+.|++|+|.|++
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 344567889999999999999999999999999999999999999999999999999999998 9999999999999974
No 16
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=3.3e-20 Score=113.53 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=71.4
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
.+..|||+||++.+++++|+++|.+||+|.++.+..++|||||+|.+.++|.+|+..||+..+.|++|+|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999983
No 17
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=2.1e-20 Score=121.23 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=72.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
...+|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+..|+|..+.|++|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4568999999999999999999999999999999875 689999999999999999999999999999999999876
Q ss_pred CCchhh
Q 031682 130 QMTQAC 135 (155)
Q Consensus 130 ~~~~~~ 135 (155)
......
T Consensus 84 ~~~~~~ 89 (115)
T 4f25_A 84 KEREAE 89 (115)
T ss_dssp CC----
T ss_pred cccccc
Confidence 554433
No 18
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.83 E-value=3.2e-21 Score=137.43 Aligned_cols=108 Identities=26% Similarity=0.356 Sum_probs=93.9
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
+.|||..+.|+.|++.++....... .....+|||+|||+.+++++|+++|++||.
T Consensus 75 ~~~~~~~~~g~~i~~~~~~~~~~~~-------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 129 (213)
T 4f02_A 75 DTMNFDVIKGKPVRIMWSQRDPSLR-------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGN 129 (213)
T ss_dssp HHHTTCEETTEECEEEECCCCTHHH-------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHhhhhhcCCccccccccccccccc-------------------------ccccccceECCcccccHHHHHHHHHhhcCC
Confidence 4689999999999999987653221 123568999999999999999999999999
Q ss_pred eeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCchh
Q 031682 82 IASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQA 134 (155)
Q Consensus 82 i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~ 134 (155)
|..+.++.+ +|||||+|.+.++|.+|++.|+|..++|++|+|.|+.++....+
T Consensus 130 i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 130 ILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp EEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHHHH
T ss_pred eEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcccch
Confidence 999998764 79999999999999999999999999999999999988654443
No 19
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.83 E-value=3.9e-20 Score=126.94 Aligned_cols=98 Identities=15% Similarity=0.356 Sum_probs=88.5
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 82 (155)
+|||..+.|++|+|.++...... ....+|||+|||..+++++|+++|++||.|
T Consensus 69 ~~~~~~~~g~~i~v~~~~~~~~~---------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v 121 (172)
T 2g4b_A 69 AFDGIIFQGQSLKIRRPHDYQPL---------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPL 121 (172)
T ss_dssp GGTTCEETTEECEEECCSSCCCC---------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCE
T ss_pred HhCCcEecCceeeecCCcccCCC---------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCc
Confidence 68999999999999987654322 237889999999999999999999999999
Q ss_pred eEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 83 ASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 83 ~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.|+.
T Consensus 122 ~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 122 KAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999765 6899999999999999999999999999999999973
No 20
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.83 E-value=1e-19 Score=134.28 Aligned_cols=77 Identities=18% Similarity=0.269 Sum_probs=72.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHhhCCcccC-CeEEEEEEeec
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANSLGQIMAINGVGHTMEG-KFMMVMGMLFR 128 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~~~~ 128 (155)
....++|||+|||..+++++|+++|++||.|..+.+..++ |+|||+|.+.++|.+|+..|+|..+. |++|+|.|++.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 3457889999999999999999999999999999998875 99999999999999999999999999 99999999863
No 21
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-19 Score=115.56 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=75.4
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|++.|++..+.|++|+|.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 344567899999999999999999999999999999999765 68999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+++..
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98764
No 22
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.5e-19 Score=115.88 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=74.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCC-----eEEEEEEe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGK-----FMMVMGML 126 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g-----~~l~v~~~ 126 (155)
....++|||+|||+.+++++|+++|.+||.|..+.+..+ |||||+|.+.++|+.|++.|+|..+.| ++|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 456799999999999999999999999999999999988 999999999999999999999999999 99999999
Q ss_pred ecCCC
Q 031682 127 FRHQM 131 (155)
Q Consensus 127 ~~~~~ 131 (155)
.++..
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 88653
No 23
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.2e-20 Score=116.42 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHhh-CCcccCCeE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANSLGQIMAINGV-GHTMEGKFM 120 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~~fV~f~~~~~a~~a~~~l-~g~~~~g~~ 120 (155)
+......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..| ++..+.|++
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344567899999999999999999999999999999999766 799999999999999999999 999999999
Q ss_pred EEEEEeecCCCc
Q 031682 121 MVMGMLFRHQMT 132 (155)
Q Consensus 121 l~v~~~~~~~~~ 132 (155)
|+|.|+.++...
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999987543
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=113.78 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=75.8
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
.......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 334466789999999999999999999999999999999875 499999999999999999999999999999999
Q ss_pred EEeecCCC
Q 031682 124 GMLFRHQM 131 (155)
Q Consensus 124 ~~~~~~~~ 131 (155)
.|+.++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99998754
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=129.79 Aligned_cols=128 Identities=18% Similarity=0.276 Sum_probs=95.6
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCC---CCC-----CCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHH
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQG---GYA-----SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLR 73 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 73 (155)
+.|||..++|++|+|.++.+.............. ... ..............++..+|||+|||..+++++|+
T Consensus 59 ~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 138 (198)
T 1qm9_A 59 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 138 (198)
T ss_dssp HHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHH
T ss_pred HHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHH
Confidence 4689999999999999998764321111100000 000 00000001111223568999999999999999999
Q ss_pred HHhcccC-CeeEEEEeC-CCCEEEEEeCCHHHHHHHHHhhCCcccC-CeEEEEEEeecC
Q 031682 74 QPFSQYG-EIASVKIPV-GKGCGFVQFANSLGQIMAINGVGHTMEG-KFMMVMGMLFRH 129 (155)
Q Consensus 74 ~~f~~~g-~i~~~~~~~-~~g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~~~~~ 129 (155)
++|++|| .|..+.+.. ++|+|||+|.+.++|..|+..|+|..++ |++|+|.|++++
T Consensus 139 ~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 139 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp HHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred HHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999 999999955 6899999999999999999999999999 999999999864
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.82 E-value=7.6e-20 Score=131.62 Aligned_cols=128 Identities=18% Similarity=0.264 Sum_probs=95.2
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCC---CC-----CCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHH
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGG---YA-----SNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLR 73 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~ 73 (155)
+.|||..+.|++|+|.++.+......+........ .. ...............+..+|||+|||..+++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 46899999999999999987632211111000000 00 00000000111223457999999999999999999
Q ss_pred HHhcccC-CeeEEEEeC-CCCEEEEEeCCHHHHHHHHHhhCCcccC-CeEEEEEEeecC
Q 031682 74 QPFSQYG-EIASVKIPV-GKGCGFVQFANSLGQIMAINGVGHTMEG-KFMMVMGMLFRH 129 (155)
Q Consensus 74 ~~f~~~g-~i~~~~~~~-~~g~~fV~f~~~~~a~~a~~~l~g~~~~-g~~l~v~~~~~~ 129 (155)
++|++|| .|..+.+.. ++|+|||+|.+.++|.+|+..|+|..++ |++|+|.|++++
T Consensus 170 ~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 170 VLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred HHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999 999999954 6999999999999999999999999999 999999999864
No 27
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=112.24 Aligned_cols=77 Identities=22% Similarity=0.336 Sum_probs=71.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|++.|++..+.|++|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3467789999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred Eee
Q 031682 125 MLF 127 (155)
Q Consensus 125 ~~~ 127 (155)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 975
No 28
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.9e-20 Score=115.94 Aligned_cols=83 Identities=24% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34467899999999999999999999999999999999775 589999999999999999999999999999999
Q ss_pred EEeecCCCc
Q 031682 124 GMLFRHQMT 132 (155)
Q Consensus 124 ~~~~~~~~~ 132 (155)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 29
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=113.97 Aligned_cols=79 Identities=18% Similarity=0.260 Sum_probs=74.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
...++|||+|||+.+++++|+ ++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|+|..+.|++|+|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456899999999999999999 99999999999999876 89999999999999999999999999999999999
Q ss_pred eecCCC
Q 031682 126 LFRHQM 131 (155)
Q Consensus 126 ~~~~~~ 131 (155)
+++...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 987653
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.2e-20 Score=115.76 Aligned_cols=83 Identities=25% Similarity=0.408 Sum_probs=76.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 33457889999999999999999999999999999999854 79999999999999999999999999999999999
Q ss_pred eecCCCc
Q 031682 126 LFRHQMT 132 (155)
Q Consensus 126 ~~~~~~~ 132 (155)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2d9p_A 90 AQRKEER 96 (103)
T ss_dssp CSSCCCC
T ss_pred ecccccC
Confidence 9987544
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.82 E-value=1e-19 Score=125.40 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=89.3
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCe
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI 82 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 82 (155)
+|||..+.|++|+|.++.++... ......+|||+|||..+++++|+++|++||.|
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~~~~-------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v 126 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGRDSK-------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEI 126 (175)
T ss_dssp HGGGEEETTEEEEEECCCCSSCS-------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEE
T ss_pred hcCCCEeCCeEEEEecCCCcccc-------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeE
Confidence 48999999999999999876432 12457899999999999999999999999998
Q ss_pred eEEEEe--CCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 83 ASVKIP--VGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 83 ~~~~~~--~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
..+ .. ..+|+|||+|.+.++|.+|+..|+|..++|++|+|.|+.+++
T Consensus 127 ~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k~ 175 (175)
T 1fje_B 127 RLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 175 (175)
T ss_dssp EEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSCC
T ss_pred EEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCCC
Confidence 877 21 237999999999999999999999999999999999998764
No 32
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=6.5e-20 Score=125.30 Aligned_cols=98 Identities=21% Similarity=0.411 Sum_probs=88.3
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
+.|||..++|++|+|.++.+.... ....+|||+|||..+++++|+++|++||.
T Consensus 63 ~~l~~~~~~g~~l~v~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 115 (168)
T 1b7f_A 63 KVLNGITVRNKRLKVSYARPGGES---------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGS 115 (168)
T ss_dssp HHHTTCEETTEECEEEECCCCSST---------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSC
T ss_pred HhcCCCEeCCcEEEEEecCCCccc---------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCc
Confidence 358999999999999999865422 35689999999999999999999999999
Q ss_pred eeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEe
Q 031682 82 IASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGK--FMMVMGML 126 (155)
Q Consensus 82 i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~ 126 (155)
|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.| ++|+|.|+
T Consensus 116 i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 116 IVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999998765 4899999999999999999999999987 99999986
No 33
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.4e-20 Score=118.05 Aligned_cols=80 Identities=10% Similarity=0.096 Sum_probs=73.4
Q ss_pred CCCcCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCC--cccCCeEEEEEEeec
Q 031682 52 DSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGH--TMEGKFMMVMGMLFR 128 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g--~~~~g~~l~v~~~~~ 128 (155)
..+.++|||+|||++ +++++|+++|++||.|.++.+.+.+|||||+|.+.++|..|++.|++ ..+.|++|+|.|+.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 456889999999998 99999999999999999999999999999999999999999998864 569999999999987
Q ss_pred CCC
Q 031682 129 HQM 131 (155)
Q Consensus 129 ~~~ 131 (155)
+..
T Consensus 102 ~~~ 104 (112)
T 1x4f_A 102 YKK 104 (112)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=8.2e-20 Score=117.57 Aligned_cols=79 Identities=19% Similarity=0.219 Sum_probs=73.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
++.++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+|.+.++|++|++.|||..+.|++|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999764 689999999999999999999999999999999999
Q ss_pred ecCCC
Q 031682 127 FRHQM 131 (155)
Q Consensus 127 ~~~~~ 131 (155)
.....
T Consensus 84 ~~~~~ 88 (110)
T 3s8s_A 84 IKGQQ 88 (110)
T ss_dssp STTHH
T ss_pred CCCcH
Confidence 76543
No 35
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=2.8e-20 Score=123.19 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=75.5
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeE--EEEeCC------CCEEEEEeCCHHHHHHHHHhhCCc----c
Q 031682 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--VKIPVG------KGCGFVQFANSLGQIMAINGVGHT----M 115 (155)
Q Consensus 48 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~----~ 115 (155)
.+.......+|||+|||+++++++|+++|++||.|.. |.++.+ +|||||+|.+. +|.+|+..|+|. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3444567789999999999999999999999999966 888765 69999999999 999999999999 9
Q ss_pred cCCeEEEEEEeecCCCchh
Q 031682 116 EGKFMMVMGMLFRHQMTQA 134 (155)
Q Consensus 116 ~~g~~l~v~~~~~~~~~~~ 134 (155)
++|++|+|.|+.+......
T Consensus 95 ~~gr~l~V~~a~~~~~~~~ 113 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKRDMA 113 (131)
T ss_dssp GGGCCCCCEECCCSCCCCC
T ss_pred CCCEEEEEEECCCCCCCCC
Confidence 9999999999988654443
No 36
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.82 E-value=3.4e-20 Score=137.02 Aligned_cols=116 Identities=10% Similarity=0.084 Sum_probs=100.0
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCC-CHHHHHHHhcccC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNV-TDEDLRQPFSQYG 80 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g 80 (155)
+.|||..++|++|+|.++.+.... .......+|||+|||..+ ++++|+++|+.||
T Consensus 155 ~~l~~~~~~g~~i~v~~a~~~~~~------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G 210 (284)
T 3smz_A 155 SDLLGKPLGPRTLYVHWTDAGQLT------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVH 210 (284)
T ss_dssp HHHTTCEETTEECEEEECCGGGCC------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSS
T ss_pred HHhCCCEeCCcEEEEEECCCCCCC------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCC
Confidence 468999999999999999875322 122467899999999995 9999999999999
Q ss_pred CeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCchhhhhhhcc
Q 031682 81 EIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMTQACTLQQLR 141 (155)
Q Consensus 81 ~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~ 141 (155)
.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.|+.++....+...++..
T Consensus 211 ~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~a 276 (284)
T 3smz_A 211 SPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIA 276 (284)
T ss_dssp CCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHH
T ss_pred CeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhH
Confidence 9999998775 799999999999999999999999999999999999998876665554443
No 37
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=7.9e-20 Score=112.49 Aligned_cols=78 Identities=28% Similarity=0.475 Sum_probs=70.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..++|++|+|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999765 689999999999999999999999999999999999
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
.+++
T Consensus 84 ~~kp 87 (87)
T 3bs9_A 84 TRKP 87 (87)
T ss_dssp C---
T ss_pred CCCC
Confidence 8763
No 38
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=116.48 Aligned_cols=81 Identities=26% Similarity=0.374 Sum_probs=76.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQM 131 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 131 (155)
....++|||+|||..+++++|+++|++||.|..+.+..++|||||+|.+.++|..|+..|+|..+.|++|+|.|++++..
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred c
Q 031682 132 T 132 (155)
Q Consensus 132 ~ 132 (155)
.
T Consensus 102 ~ 102 (109)
T 1x4g_A 102 M 102 (109)
T ss_dssp S
T ss_pred C
Confidence 3
No 39
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=2e-19 Score=116.43 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=75.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
......++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|++..+.|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999998765 489999999999999999999999999999999
Q ss_pred EEeecCCC
Q 031682 124 GMLFRHQM 131 (155)
Q Consensus 124 ~~~~~~~~ 131 (155)
.|+.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987754
No 40
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1.1e-19 Score=110.97 Aligned_cols=76 Identities=24% Similarity=0.346 Sum_probs=71.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
+++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..|+|..++|++|+|.|+.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 368999999999999999999999999999999865 79999999999999999999999999999999999987
Q ss_pred CC
Q 031682 129 HQ 130 (155)
Q Consensus 129 ~~ 130 (155)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 41
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=2.5e-19 Score=115.92 Aligned_cols=83 Identities=29% Similarity=0.494 Sum_probs=76.0
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
......++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34467889999999999999999999999999999999865 589999999999999999999999999999999
Q ss_pred EEeecCCCc
Q 031682 124 GMLFRHQMT 132 (155)
Q Consensus 124 ~~~~~~~~~ 132 (155)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999877544
No 42
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=5.6e-20 Score=116.37 Aligned_cols=78 Identities=21% Similarity=0.259 Sum_probs=73.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
....++|||+|||..+++++|+++|++||.|..+.+...+|||||+|.+.++|..|+..|+|..++|++|+|.|++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 345789999999999999999999999999999999999999999999999999999999999999999999999864
No 43
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=116.76 Aligned_cols=82 Identities=29% Similarity=0.350 Sum_probs=75.9
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.......++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|+..|+|..++|++|+|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 444567899999999999999999999999999999999876 7999999999999999999999999999999999
Q ss_pred EeecCC
Q 031682 125 MLFRHQ 130 (155)
Q Consensus 125 ~~~~~~ 130 (155)
|+.++.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998764
No 44
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=115.93 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=74.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999764 6999999999999999999999999999999999
Q ss_pred EeecCC
Q 031682 125 MLFRHQ 130 (155)
Q Consensus 125 ~~~~~~ 130 (155)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998765
No 45
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.6e-19 Score=114.58 Aligned_cols=81 Identities=22% Similarity=0.338 Sum_probs=74.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 456799999999999999999999999999999999765 58999999999999999999999999999999999
Q ss_pred eecCCCc
Q 031682 126 LFRHQMT 132 (155)
Q Consensus 126 ~~~~~~~ 132 (155)
+.++...
T Consensus 92 a~~~~~~ 98 (103)
T 2cq0_A 92 AKPSTNS 98 (103)
T ss_dssp SSCCCCS
T ss_pred CCCCCCC
Confidence 9887543
No 46
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=2.3e-19 Score=112.88 Aligned_cols=80 Identities=29% Similarity=0.457 Sum_probs=72.5
Q ss_pred CCCCCCcCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 49 SEGDSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
....+..++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|+|..+.|++|+|.|++
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 44456789999999998 99999999999999999999885 8999999999999999999999999999999999998
Q ss_pred cCC
Q 031682 128 RHQ 130 (155)
Q Consensus 128 ~~~ 130 (155)
++.
T Consensus 94 ~~~ 96 (97)
T 2xnq_A 94 SNA 96 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 47
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-19 Score=114.44 Aligned_cols=83 Identities=17% Similarity=0.331 Sum_probs=75.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhC------CcccC
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVG------HTMEG 117 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~------g~~~~ 117 (155)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..++ +..++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34466889999999999999999999999999999999854 7999999999999999999999 99999
Q ss_pred CeEEEEEEeecCCCc
Q 031682 118 KFMMVMGMLFRHQMT 132 (155)
Q Consensus 118 g~~l~v~~~~~~~~~ 132 (155)
|++|+|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999877543
No 48
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=2.4e-19 Score=114.13 Aligned_cols=81 Identities=23% Similarity=0.419 Sum_probs=74.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCC---eEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGK---FMMVM 123 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g---~~l~v 123 (155)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.| ++|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 356899999999999999999999999999999999876 7999999999999999999999999988 99999
Q ss_pred EEeecCCCc
Q 031682 124 GMLFRHQMT 132 (155)
Q Consensus 124 ~~~~~~~~~ 132 (155)
.|+.++..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999987644
No 49
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3e-19 Score=112.60 Aligned_cols=80 Identities=23% Similarity=0.354 Sum_probs=73.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+. +++..+.|++|+|.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999764 7999999999999999998 999999999999999
Q ss_pred eecCCCc
Q 031682 126 LFRHQMT 132 (155)
Q Consensus 126 ~~~~~~~ 132 (155)
+.++...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9977543
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=112.14 Aligned_cols=78 Identities=28% Similarity=0.270 Sum_probs=72.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3466789999999999999999999999999999999754 6899999999999999999999999999999999
Q ss_pred Eeec
Q 031682 125 MLFR 128 (155)
Q Consensus 125 ~~~~ 128 (155)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9874
No 51
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=3.3e-19 Score=115.84 Aligned_cols=79 Identities=24% Similarity=0.343 Sum_probs=72.4
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
.......++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|++|++.|+|..++|++|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567899999999999999999999999999999999765 68999999999999999999999999999999
Q ss_pred EEEee
Q 031682 123 MGMLF 127 (155)
Q Consensus 123 v~~~~ 127 (155)
|.|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 52
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=4e-20 Score=115.15 Aligned_cols=77 Identities=14% Similarity=0.163 Sum_probs=69.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhC-CcccCCeEEEEEEe
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPVG------KGCGFVQFANSLGQIMAINGVG-HTMEGKFMMVMGML 126 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~-g~~~~g~~l~v~~~ 126 (155)
+.+|||+|||+++++++|+++|++|| .|..+.++.+ +|||||+|.+.++|.+|++.++ +..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999988764 7999999999999999999874 55799999999999
Q ss_pred ecCCC
Q 031682 127 FRHQM 131 (155)
Q Consensus 127 ~~~~~ 131 (155)
.+++.
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 88753
No 53
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=1.5e-19 Score=115.92 Aligned_cols=82 Identities=26% Similarity=0.344 Sum_probs=73.6
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 48 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
........++|||+|||..+++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|+|..++|++|+|.|+.
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34455778999999999999999999999999999999998 8999999999999999999999999999999999998
Q ss_pred cCCC
Q 031682 128 RHQM 131 (155)
Q Consensus 128 ~~~~ 131 (155)
+...
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7653
No 54
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=113.72 Aligned_cols=81 Identities=22% Similarity=0.446 Sum_probs=75.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|++..+.|++|+|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 356789999999999999999999999999999999765 79999999999999999999999999999999999
Q ss_pred eecCCCc
Q 031682 126 LFRHQMT 132 (155)
Q Consensus 126 ~~~~~~~ 132 (155)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9987544
No 55
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.8e-19 Score=112.05 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=74.6
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56789999999999999999999999999999999765 599999999999999999999999999999999999
Q ss_pred ecCCCc
Q 031682 127 FRHQMT 132 (155)
Q Consensus 127 ~~~~~~ 132 (155)
.++...
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 987644
No 56
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=3.1e-19 Score=114.61 Aligned_cols=81 Identities=15% Similarity=0.318 Sum_probs=74.9
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..++|++|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3466789999999999999999999999999999999765 6999999999999999999999999999999999
Q ss_pred EeecCCC
Q 031682 125 MLFRHQM 131 (155)
Q Consensus 125 ~~~~~~~ 131 (155)
|+.++..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987653
No 57
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=114.08 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=74.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
+.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..+.|++|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34466899999999999999999999999999999999764 699999999999999999999999999999999
Q ss_pred EEeecCC
Q 031682 124 GMLFRHQ 130 (155)
Q Consensus 124 ~~~~~~~ 130 (155)
.|+.+..
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998654
No 58
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.1e-19 Score=111.61 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=74.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred ecCCCch
Q 031682 127 FRHQMTQ 133 (155)
Q Consensus 127 ~~~~~~~ 133 (155)
.++....
T Consensus 83 ~~~~~~~ 89 (95)
T 2dnz_A 83 TERLDGG 89 (95)
T ss_dssp SCCCCCC
T ss_pred ccccCCC
Confidence 8876443
No 59
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=113.10 Aligned_cols=81 Identities=26% Similarity=0.378 Sum_probs=75.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|++..+.|++|+|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999774 68999999999999999999999999999999999
Q ss_pred eecCCCc
Q 031682 126 LFRHQMT 132 (155)
Q Consensus 126 ~~~~~~~ 132 (155)
+.++...
T Consensus 89 a~~~~~~ 95 (102)
T 1x5s_A 89 AGKSSDN 95 (102)
T ss_dssp EECCCCC
T ss_pred CCCCCCC
Confidence 9987543
No 60
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1.4e-19 Score=119.68 Aligned_cols=82 Identities=27% Similarity=0.300 Sum_probs=75.0
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
.....+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..++|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 334466789999999999999999999999999999999764 79999999999999999999999999999999
Q ss_pred EEEeecCC
Q 031682 123 MGMLFRHQ 130 (155)
Q Consensus 123 v~~~~~~~ 130 (155)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 61
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=4.8e-19 Score=112.50 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=73.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQM 131 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 131 (155)
....++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|.+|+..|++..+.|++|+|.|+.++..
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 3567899999999999999999999999999999887 66999999999999999999999999999999999987754
Q ss_pred ch
Q 031682 132 TQ 133 (155)
Q Consensus 132 ~~ 133 (155)
..
T Consensus 86 ~~ 87 (103)
T 2dgu_A 86 KR 87 (103)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=2.8e-19 Score=109.55 Aligned_cols=75 Identities=24% Similarity=0.474 Sum_probs=70.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||+.+++++|+++|++||.|..+.++.+ +|+|||+|.+.++|..|+..|+|..++|++|+|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 56789999999999999999999999999999998653 799999999999999999999999999999999997
Q ss_pred e
Q 031682 127 F 127 (155)
Q Consensus 127 ~ 127 (155)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 63
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=110.98 Aligned_cols=79 Identities=23% Similarity=0.359 Sum_probs=73.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQM 131 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 131 (155)
....++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|..|+..|++..+.|++|+|.|+.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 3567899999999999999999999999999999998 78999999999999999999999999999999999987654
Q ss_pred c
Q 031682 132 T 132 (155)
Q Consensus 132 ~ 132 (155)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 64
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=117.25 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=73.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
...++|||+|||+.+++++|+++|++||.|..+.++..+|||||+|.+.++|..|+..|+|..+.|++|+|.|+....
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 356899999999999999999999999999999999999999999999999999999999999999999999998653
No 65
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.8e-19 Score=113.62 Aligned_cols=80 Identities=26% Similarity=0.281 Sum_probs=73.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|++..+.|++|+|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456789999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 97654
No 66
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=3.8e-19 Score=111.54 Aligned_cols=79 Identities=16% Similarity=0.329 Sum_probs=73.6
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..++|+.|+|.|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999765 79999999999999999999999999999999999998
Q ss_pred CCCch
Q 031682 129 HQMTQ 133 (155)
Q Consensus 129 ~~~~~ 133 (155)
+....
T Consensus 82 ~~~~~ 86 (96)
T 2x1f_A 82 SDISG 86 (96)
T ss_dssp SSGGG
T ss_pred CCCCC
Confidence 76443
No 67
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=109.69 Aligned_cols=79 Identities=24% Similarity=0.403 Sum_probs=73.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
.....++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|.+|+..|+|..+.|++|+|.|+.++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 34678999999999999999999999999999999998 5599999999999999999999999999999999998765
Q ss_pred C
Q 031682 131 M 131 (155)
Q Consensus 131 ~ 131 (155)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 68
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.80 E-value=1.5e-19 Score=123.18 Aligned_cols=98 Identities=27% Similarity=0.523 Sum_probs=87.1
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
+.|||..++|++|+|.++.+.... ....+|||+|||..+++++|+++|++||.
T Consensus 62 ~~l~~~~~~g~~l~v~~~~~~~~~---------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~ 114 (167)
T 1fxl_A 62 NTLNGLRLQTKTIKVSYARPSSAS---------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGR 114 (167)
T ss_dssp HHHTTCEETTEECEEEECCCCCGG---------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCCccCCceEEEEecCCCccc---------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCC
Confidence 458999999999999999865322 34578999999999999999999999999
Q ss_pred eeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCe--EEEEEEe
Q 031682 82 IASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKF--MMVMGML 126 (155)
Q Consensus 82 i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~--~l~v~~~ 126 (155)
|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|+ +|+|.|+
T Consensus 115 i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 115 IITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999998764 68999999999999999999999999996 4888885
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=109.30 Aligned_cols=78 Identities=24% Similarity=0.382 Sum_probs=72.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC-------CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV-------GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~-------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
...++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|..|+..|+|..++|++|+|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3568999999999999999999999999999998854 378999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98764
No 70
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=112.97 Aligned_cols=77 Identities=12% Similarity=0.232 Sum_probs=69.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCC--eeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCc----ccCCe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE--IASVKIPVG------KGCGFVQFANSLGQIMAINGVGHT----MEGKF 119 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~----~~~g~ 119 (155)
...-.+|||+|||+.+++++|+++|++||. +.+++++++ +|||||+|.+.++|.+|++.|+|. .++|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 356789999999999999999999999994 678888765 799999999999999999999997 48999
Q ss_pred EEEEEEeec
Q 031682 120 MMVMGMLFR 128 (155)
Q Consensus 120 ~l~v~~~~~ 128 (155)
+|+|.|+++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999975
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=112.04 Aligned_cols=79 Identities=25% Similarity=0.256 Sum_probs=72.7
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|++..+.|++|+|.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 34467799999999999999999999999999999999875 6899999999999999999999999999999999
Q ss_pred Eeec
Q 031682 125 MLFR 128 (155)
Q Consensus 125 ~~~~ 128 (155)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 72
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=3.7e-19 Score=112.22 Aligned_cols=79 Identities=28% Similarity=0.299 Sum_probs=72.3
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEeCC------CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
+......++|||+|||.++++++|+++|++||.|.. +.+..+ +|||||+|.+.++|..|+..|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 444567899999999999999999999999999999 888764 689999999999999999999999
Q ss_pred ccCCeEEEEEEee
Q 031682 115 MEGKFMMVMGMLF 127 (155)
Q Consensus 115 ~~~g~~l~v~~~~ 127 (155)
.+.|++|+|.|++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 73
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-18 Score=109.52 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=72.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhccc--CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQY--GEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.....++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|..|+..|+|..+.|++|+|.|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34567899999999999999999999999 899998876 67999999999999999999999999999999999987
Q ss_pred CCC
Q 031682 129 HQM 131 (155)
Q Consensus 129 ~~~ 131 (155)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpd_A 89 VDK 91 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 74
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=114.57 Aligned_cols=82 Identities=26% Similarity=0.444 Sum_probs=75.1
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
+......++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 344567789999999999999999999999999999998754 68999999999999999999999999999999
Q ss_pred EEEeecCC
Q 031682 123 MGMLFRHQ 130 (155)
Q Consensus 123 v~~~~~~~ 130 (155)
|.|+.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99998764
No 75
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-18 Score=108.87 Aligned_cols=79 Identities=20% Similarity=0.349 Sum_probs=73.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQM 131 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 131 (155)
....++|||+|| .+++++|+++|++||.|..+.+...+|||||+|.+.++|.+|+..|+|..+.|++|+|.|+.++..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 356789999996 899999999999999999999998899999999999999999999999999999999999987654
Q ss_pred c
Q 031682 132 T 132 (155)
Q Consensus 132 ~ 132 (155)
.
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 76
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.80 E-value=1.3e-19 Score=128.62 Aligned_cols=115 Identities=19% Similarity=0.367 Sum_probs=93.3
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
+.|||..|+|++|+|.++........... ..........+|||+|||..+++++|+++|++||.
T Consensus 88 ~~l~~~~~~g~~l~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 151 (216)
T 2qfj_A 88 EQMNSVMLGGRNIKVGRPSNIGQAQPIID----------------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 151 (216)
T ss_dssp HHHSSCCCC-CCCEEECCSCCGGGHHHHH----------------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSC
T ss_pred HHccCCeeCCeeEEEecCCCccccchhhh----------------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCC
Confidence 45899999999999998876532210000 00011245689999999999999999999999999
Q ss_pred eeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCc
Q 031682 82 IASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMT 132 (155)
Q Consensus 82 i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 132 (155)
|..+.+..+ +|+|||+|.+.++|.+|+..|+|..++|++|+|.|+.+++..
T Consensus 152 v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 152 IKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred eeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 999999865 689999999999999999999999999999999999977533
No 77
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=111.91 Aligned_cols=80 Identities=28% Similarity=0.439 Sum_probs=74.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
...++|||+|||+.+++++|+++|++||.|..+ .+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 88765 79999999999999999999999999999999999
Q ss_pred eecCCCc
Q 031682 126 LFRHQMT 132 (155)
Q Consensus 126 ~~~~~~~ 132 (155)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9876543
No 78
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=115.00 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=72.7
Q ss_pred CCcCeEEE--cCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCccc-----CCeEEEEEE
Q 031682 53 SSNTTIFV--GGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTME-----GKFMMVMGM 125 (155)
Q Consensus 53 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~-----~g~~l~v~~ 125 (155)
.+..+||| +||++.+++++|+++|++||.|..+.++.++|||||+|.+.++|++|++.|+|..+ .|++|.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 45788999 88999999999999999999999999998899999999999999999999999988 789999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+...+
T Consensus 103 a~~~p 107 (114)
T 2cq2_A 103 VEKVQ 107 (114)
T ss_dssp ESCCC
T ss_pred cccCc
Confidence 98654
No 79
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=117.01 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=72.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 4567899999999999998876 69999999999988653 8999999999999999999999999999999999
Q ss_pred EeecCCCc
Q 031682 125 MLFRHQMT 132 (155)
Q Consensus 125 ~~~~~~~~ 132 (155)
|+.++...
T Consensus 106 ~a~~~~~~ 113 (127)
T 2a3j_A 106 FSETPQSQ 113 (127)
T ss_dssp ECCCCCHH
T ss_pred EccCcchh
Confidence 99976533
No 80
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=3.9e-19 Score=116.77 Aligned_cols=84 Identities=20% Similarity=0.357 Sum_probs=76.2
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
+......++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..|+|..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 334466889999999999999999999999999999999765 79999999999999999999999999999999
Q ss_pred EEEeecCCCc
Q 031682 123 MGMLFRHQMT 132 (155)
Q Consensus 123 v~~~~~~~~~ 132 (155)
|.|+.++...
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876533
No 81
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=3.2e-19 Score=110.93 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=74.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|++..++|++|+|.|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 356789999999999999999999999999999998764 6999999999999999999999999999999999998
Q ss_pred cCCC
Q 031682 128 RHQM 131 (155)
Q Consensus 128 ~~~~ 131 (155)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 82
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.3e-19 Score=113.34 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=75.1
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCee--------EEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcc
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--------SVKIPVG------KGCGFVQFANSLGQIMAINGVGHTM 115 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~ 115 (155)
......++|||+|||+.+++++|+++|++||.|. .+.+..+ +|||||+|.+.++|..|+..|+|..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 5888765 6899999999999999999999999
Q ss_pred cCCeEEEEEEeecCCCc
Q 031682 116 EGKFMMVMGMLFRHQMT 132 (155)
Q Consensus 116 ~~g~~l~v~~~~~~~~~ 132 (155)
+.|++|+|.|+.++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999987543
No 83
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=1.5e-18 Score=113.66 Aligned_cols=80 Identities=18% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.....++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3456789999999999999999999999999999999874 79999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 98754
No 84
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=2.4e-18 Score=114.75 Aligned_cols=85 Identities=25% Similarity=0.326 Sum_probs=76.8
Q ss_pred CCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEE
Q 031682 48 QSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMM 121 (155)
Q Consensus 48 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l 121 (155)
..+.....++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..+.|++|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3445567899999999999999999999999999999998754 6899999999999999999999999999999
Q ss_pred EEEEeecCCCc
Q 031682 122 VMGMLFRHQMT 132 (155)
Q Consensus 122 ~v~~~~~~~~~ 132 (155)
+|.|+.++...
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999977544
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3e-19 Score=115.39 Aligned_cols=79 Identities=22% Similarity=0.313 Sum_probs=72.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+ .|+|..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3345789999999999999999999999999999999754 689999999999999999 999999999999999
Q ss_pred EeecCC
Q 031682 125 MLFRHQ 130 (155)
Q Consensus 125 ~~~~~~ 130 (155)
|+.++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 998654
No 86
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=112.52 Aligned_cols=81 Identities=27% Similarity=0.413 Sum_probs=73.9
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
...+...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..+++ .+.|++|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 444567899999999999999999999999999999999875 68999999999999999999998 89999999
Q ss_pred EEEeecCC
Q 031682 123 MGMLFRHQ 130 (155)
Q Consensus 123 v~~~~~~~ 130 (155)
|.|+.+..
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997653
No 87
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.79 E-value=6.3e-19 Score=112.38 Aligned_cols=83 Identities=17% Similarity=0.337 Sum_probs=75.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCccc---CCeE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTME---GKFM 120 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~---~g~~ 120 (155)
..+...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34467789999999999999999999999999999999774 69999999999999999999999987 8899
Q ss_pred EEEEEeecCCCc
Q 031682 121 MVMGMLFRHQMT 132 (155)
Q Consensus 121 l~v~~~~~~~~~ 132 (155)
|+|.|+.++...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999876543
No 88
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=4.1e-19 Score=114.34 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=71.1
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccC-CeeEEEEeC--CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYG-EIASVKIPV--GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
...++|||+|||+++++++|+++|++|| .|..+.+.. .+|||||+|.+.++|++|++.|+|..++|++|+|.++...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999 999998863 4899999999999999999999999999999999999755
Q ss_pred C
Q 031682 130 Q 130 (155)
Q Consensus 130 ~ 130 (155)
+
T Consensus 106 p 106 (111)
T 2jvr_A 106 P 106 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 89
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=110.72 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=72.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
....++|||+|||+.+++++|+++|+.|| |..+.++.+ +|||||+|.+.++|.+|+ .|++..+.|++|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35678999999999999999999999999 999998754 689999999999999999 899999999999999
Q ss_pred EeecCCCc
Q 031682 125 MLFRHQMT 132 (155)
Q Consensus 125 ~~~~~~~~ 132 (155)
|+.++...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99987544
No 90
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.79 E-value=4.1e-19 Score=131.69 Aligned_cols=108 Identities=19% Similarity=0.381 Sum_probs=91.3
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCC-CCHHHHHHHhcccC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYG 80 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g 80 (155)
..|||..++|++|+|.++.+....... ........+|||+|||+. +++++|+++|++||
T Consensus 177 ~~l~g~~~~g~~l~v~~a~~~~~~~~~--------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 177 EKLNGLKIEGYTLVTKVSNPLEKSKRT--------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp HHHTTCEETTEECEEEECCCC-----------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred HHhCCCEeCCcEEEEEECCCCcccccc--------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 358999999999999999876533211 123356789999999999 99999999999999
Q ss_pred CeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 81 EIASVKIPVG-------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 81 ~i~~~~~~~~-------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
.|..+.+..+ +|+|||+|.+.++|.+|+ .|+|..++|++|+|.|+.+++
T Consensus 237 ~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 237 SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 9999999653 689999999999999999 999999999999999998764
No 91
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.2e-18 Score=110.66 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=72.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||+.+++++|+++|++|| |..+.++.+ +|||||+|.+.++|..|+ .|++..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999996 999999765 589999999999999999 899999999999999
Q ss_pred EeecCCCc
Q 031682 125 MLFRHQMT 132 (155)
Q Consensus 125 ~~~~~~~~ 132 (155)
|+.++...
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99876543
No 92
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=108.92 Aligned_cols=78 Identities=13% Similarity=0.297 Sum_probs=70.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEe--CCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP--VGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~--~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
....++|||+|||+.+++++|+++|++||.|. +.+. ..+|||||+|.+.++|..|+..|+|..+.|++|+|.|+.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 45678999999999999999999999999985 4444 44899999999999999999999999999999999999876
Q ss_pred C
Q 031682 130 Q 130 (155)
Q Consensus 130 ~ 130 (155)
.
T Consensus 95 ~ 95 (97)
T 2e5j_A 95 R 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=113.79 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=73.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHH---HHhcccCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHhhCCcccCCe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLR---QPFSQYGEIASVKIPVG---------KGCGFVQFANSLGQIMAINGVGHTMEGKF 119 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~---------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~ 119 (155)
.....+|||+|||+.+++++|+ ++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3457899999999999999999 99999999999999865 37999999999999999999999999999
Q ss_pred EEEEEEeecCC
Q 031682 120 MMVMGMLFRHQ 130 (155)
Q Consensus 120 ~l~v~~~~~~~ 130 (155)
+|+|.|+.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999999876
No 94
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=111.28 Aligned_cols=79 Identities=23% Similarity=0.327 Sum_probs=72.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45789999999999999999999999999999998742 589999999999999999999999999999999
Q ss_pred EEeecCCC
Q 031682 124 GMLFRHQM 131 (155)
Q Consensus 124 ~~~~~~~~ 131 (155)
.|+.++..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 95
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.79 E-value=2.3e-18 Score=110.61 Aligned_cols=75 Identities=28% Similarity=0.448 Sum_probs=70.6
Q ss_pred CCcCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 53 SSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 53 ~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
...++|||+|||+. +++++|+++|++||.|..+.+ .+|||||+|.+.++|..|+..|++..+.|++|+|.|+.+.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 45689999999999 999999999999999999998 5899999999999999999999999999999999999854
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.79 E-value=6.1e-19 Score=110.65 Aligned_cols=81 Identities=19% Similarity=0.273 Sum_probs=73.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEeC---CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPV---GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~---~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
...+.++|||+|||+.+++++|+ ++|++||.|..+.+.. .+|||||+|.+.++|..|+..|+|..+.|++|+|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34577899999999999999999 9999999999998874 3899999999999999999999999999999999
Q ss_pred EEeecCCC
Q 031682 124 GMLFRHQM 131 (155)
Q Consensus 124 ~~~~~~~~ 131 (155)
.|+.++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99997653
No 97
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=107.44 Aligned_cols=77 Identities=19% Similarity=0.290 Sum_probs=72.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
....++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|..|+..|+|..+.|++|+|.|+.+..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 3567899999999999999999999999999999998 5599999999999999999999999999999999998764
No 98
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=3.8e-19 Score=126.16 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=88.8
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCCCccc-cccCCCC---CCCCCCCCCC------CCCCCCCCcCeEEEcCCCCCCCHH
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSSGYQQ-QYSSQGG---YASNGAPGQG------PQSEGDSSNTTIFVGGLDPNVTDE 70 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~~~~~-~~~~~~~---~~~~~~~~~~------~~~~~~~~~~~l~v~~l~~~~~~~ 70 (155)
|+.|||..|.||+|+|.+++.+...+... ....... ........+. .......+..+|||+|||+.++++
T Consensus 59 i~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~ 138 (205)
T 3tyt_A 59 ITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEE 138 (205)
T ss_dssp HHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHH
T ss_pred HHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHH
Confidence 35799999999999999997653211100 0000000 0000000000 001123456899999999999999
Q ss_pred HHHHHhcccCCe--eEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCe----EEEEEEe
Q 031682 71 DLRQPFSQYGEI--ASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKF----MMVMGML 126 (155)
Q Consensus 71 ~l~~~f~~~g~i--~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~----~l~v~~~ 126 (155)
+|+++|++||.| ..+.+..+ +|+|||+|.+.++|..|+..|||..+.|. ++.|.|+
T Consensus 139 ~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 139 NFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999998 88888765 58999999999999999999999999876 5666664
No 99
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=113.38 Aligned_cols=79 Identities=18% Similarity=0.303 Sum_probs=73.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999875 5999999999999999999999999999999999998
Q ss_pred cCCC
Q 031682 128 RHQM 131 (155)
Q Consensus 128 ~~~~ 131 (155)
+...
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7653
No 100
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.4e-18 Score=121.44 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=85.0
Q ss_pred cCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCee
Q 031682 4 MNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA 83 (155)
Q Consensus 4 mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~ 83 (155)
++|..++|++|+|.++.+..... .+.......+|||+|||+.+++++|+++|+.||.|.
T Consensus 74 ~~~~~~~g~~l~v~~~~~~~~~~---------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~ 132 (196)
T 1l3k_A 74 ARPHKVDGRVVEPKRAVSREDSQ---------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 132 (196)
T ss_dssp TCSCEETTEECEEEECCC--------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEE
T ss_pred cCCCEECCEEeeeecccCccccc---------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeE
Confidence 47899999999999988764321 012234568999999999999999999999999999
Q ss_pred EEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCc
Q 031682 84 SVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMT 132 (155)
Q Consensus 84 ~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 132 (155)
.+.+..+ +|||||+|.+.++|.+|+.. ++..++|+.|.|.|+.++...
T Consensus 133 ~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 133 VIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred EEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 9998764 68999999999999999986 799999999999999887543
No 101
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=111.95 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=73.8
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEe-------CCCCEEEEEeCCHHHHHHHHHhhC--CcccCCeEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIP-------VGKGCGFVQFANSLGQIMAINGVG--HTMEGKFMMV 122 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~-------~~~g~~fV~f~~~~~a~~a~~~l~--g~~~~g~~l~ 122 (155)
...++|||+|||+.+++++|+++|.+||. |..+.++ ..+|||||+|.+.++|..|+..|+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999987 348999999999999999999996 5899999999
Q ss_pred EEEeecCCCchh
Q 031682 123 MGMLFRHQMTQA 134 (155)
Q Consensus 123 v~~~~~~~~~~~ 134 (155)
|.|+.++.....
T Consensus 86 V~~a~~~~~~~~ 97 (109)
T 2dis_A 86 VDWAEPEIDVDE 97 (109)
T ss_dssp EEESCSSCSTTT
T ss_pred EEEcCCCCCcCH
Confidence 999998765443
No 102
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=110.88 Aligned_cols=79 Identities=24% Similarity=0.371 Sum_probs=70.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCC-eeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCC-cccCCeEEEEEEeecCC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGE-IASVKIPVGKGCGFVQFANSLGQIMAINGVGH-TMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g-~~~~g~~l~v~~~~~~~ 130 (155)
...++|||+|||+.+++++|+++|++||. |..+.+ ..+|||||+|.+.++|..|+..|+| ..+.|++|+|.|+.++.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 56789999999999999999999999998 555544 4589999999999999999999999 99999999999998775
Q ss_pred Cc
Q 031682 131 MT 132 (155)
Q Consensus 131 ~~ 132 (155)
..
T Consensus 85 ~~ 86 (93)
T 2cqh_A 85 LR 86 (93)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 103
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=112.62 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=73.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||+.+++++|+++|..||.|..+.+..+ +|||||+|.+.++|..|+.. ++..++|++|+|.
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 3455789999999999999999999999999999999875 68999999999999999998 9999999999999
Q ss_pred EeecCCC
Q 031682 125 MLFRHQM 131 (155)
Q Consensus 125 ~~~~~~~ 131 (155)
|+.++..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9988754
No 104
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.6e-18 Score=110.71 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=72.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+.|++|+|.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4467899999999999999999999999999999999865 78999999999999999999999999999999999
Q ss_pred ee
Q 031682 126 LF 127 (155)
Q Consensus 126 ~~ 127 (155)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 105
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-18 Score=113.80 Aligned_cols=78 Identities=23% Similarity=0.469 Sum_probs=71.4
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
........+|||+|||..+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|++.|+|..+.|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344567899999999999999999999999999999999765 79999999999999999999999999999999
Q ss_pred EEEe
Q 031682 123 MGML 126 (155)
Q Consensus 123 v~~~ 126 (155)
|.|+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9885
No 106
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=108.26 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=72.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEeCC--CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIPVG--KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
....++|||+|||+.+++++|+++|++||.|..+ .++.+ .+.|||+|.+.++|..|+..|+|..++|++|+|.|+.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3457899999999999999999999999999999 47665 45699999999999999999999999999999999998
Q ss_pred CCC
Q 031682 129 HQM 131 (155)
Q Consensus 129 ~~~ 131 (155)
+..
T Consensus 92 ~~~ 94 (96)
T 2e44_A 92 EMA 94 (96)
T ss_dssp CCS
T ss_pred ccc
Confidence 743
No 107
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=8.2e-19 Score=110.08 Aligned_cols=79 Identities=28% Similarity=0.412 Sum_probs=72.0
Q ss_pred CCCcCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 52 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 52 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
..+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|+|..+.|++|+|.|+.+..
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 35688999999999 99999999999999999999987 7899999999999999999999999999999999998765
Q ss_pred Cc
Q 031682 131 MT 132 (155)
Q Consensus 131 ~~ 132 (155)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 108
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=110.61 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=70.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||+.+++++|+++|.+||.|..+.++.+ +|||||+|.+.++|.+|+..|+|..+.|++|+|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 356789999999999999999999999999876655432 69999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+..+.
T Consensus 92 a~~~~ 96 (98)
T 2cqp_A 92 GSGPS 96 (98)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 98654
No 109
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=111.92 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=72.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCCc
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQMT 132 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 132 (155)
++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|+.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 47999999999999999999999999999999987 999999999999999999999999999999999999876533
No 110
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=111.29 Aligned_cols=82 Identities=29% Similarity=0.357 Sum_probs=74.6
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+.. ++..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34567899999999999999999999999999999999775 58999999999999999998 999999999999
Q ss_pred EEeecCCCc
Q 031682 124 GMLFRHQMT 132 (155)
Q Consensus 124 ~~~~~~~~~ 132 (155)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999877543
No 111
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.1e-19 Score=112.71 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=65.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
.+|||+|||+++++++|+++|++|| .|.++.+..+ +|||||+|.+.++|++|++.|+|..++|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 9999998765 6899999999999999999999999999999999998
Q ss_pred cCCC
Q 031682 128 RHQM 131 (155)
Q Consensus 128 ~~~~ 131 (155)
+.+.
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 112
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.7e-18 Score=109.69 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCccc--------
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTME-------- 116 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~-------- 116 (155)
......++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34456789999999999999999999999999999999775 68999999999999999999999998
Q ss_pred CCeEEEEEEeecCC
Q 031682 117 GKFMMVMGMLFRHQ 130 (155)
Q Consensus 117 ~g~~l~v~~~~~~~ 130 (155)
.+++|.|.|+.++.
T Consensus 100 ~~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 100 PTEPLLCKFSGPSS 113 (114)
T ss_dssp CSSCBEEEECCCSC
T ss_pred CCCceeEEccCCCC
Confidence 57889999998653
No 113
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=111.75 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=74.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcc-cCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcc-cCCeEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQ-YGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTM-EGKFMMVMG 124 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~-~~g~~l~v~ 124 (155)
....++|||+|||+.+++++|+++|++ ||.|..+.++.+ +|||||+|.+.++|..|+..|++.. +.|++|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456789999999999999999999999 999999999875 7999999999999999999999999 999999999
Q ss_pred EeecCCCc
Q 031682 125 MLFRHQMT 132 (155)
Q Consensus 125 ~~~~~~~~ 132 (155)
|+.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99876543
No 114
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=2.5e-18 Score=110.32 Aligned_cols=82 Identities=27% Similarity=0.401 Sum_probs=69.7
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
.......++|||+|||..+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|.+|+..+ +..++|+.|+
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 344567889999999999999999999999999999999765 689999999999999999976 5899999999
Q ss_pred EEEeecCCC
Q 031682 123 MGMLFRHQM 131 (155)
Q Consensus 123 v~~~~~~~~ 131 (155)
|.++.++..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987653
No 115
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=1.7e-18 Score=111.97 Aligned_cols=77 Identities=16% Similarity=0.320 Sum_probs=72.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..++|+.|+|.|+.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 45689999999999999999999999999999999765 799999999999999999999999999999999999864
No 116
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-18 Score=105.67 Aligned_cols=78 Identities=17% Similarity=0.163 Sum_probs=72.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
....++|||+|||+.+++++|+++|+.| .|..+.++.+ +|+|||+|.+.++|.+|+. ++|..++|++|+|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3567899999999999999999999999 9999998765 7899999999999999999 9999999999999999
Q ss_pred ecCCC
Q 031682 127 FRHQM 131 (155)
Q Consensus 127 ~~~~~ 131 (155)
.+++.
T Consensus 85 ~~~~~ 89 (91)
T 2dgw_A 85 KSGPS 89 (91)
T ss_dssp SSCCC
T ss_pred CcCCC
Confidence 87653
No 117
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=2.3e-18 Score=106.34 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=70.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
..++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+ .++|..+.|++|+|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999998765 789999999999999999 899999999999999998
Q ss_pred cCC
Q 031682 128 RHQ 130 (155)
Q Consensus 128 ~~~ 130 (155)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
No 118
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-19 Score=113.70 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=74.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
+...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 346789999999999999999999999999999998754 69999999999999999999999999999999999
Q ss_pred eecCCCch
Q 031682 126 LFRHQMTQ 133 (155)
Q Consensus 126 ~~~~~~~~ 133 (155)
+.+.....
T Consensus 85 a~~~~~~~ 92 (104)
T 1p1t_A 85 AASEKNKE 92 (104)
T ss_dssp TTCTTHHH
T ss_pred CCCccchh
Confidence 98765443
No 119
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.3e-18 Score=107.21 Aligned_cols=82 Identities=24% Similarity=0.342 Sum_probs=72.9
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
.......++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+. ++..++|++|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 344567789999999999999999999999999999999765 5899999999999999998 47899999999
Q ss_pred EEEeecCCCc
Q 031682 123 MGMLFRHQMT 132 (155)
Q Consensus 123 v~~~~~~~~~ 132 (155)
|.|+.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999987543
No 120
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=6e-19 Score=111.52 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=69.0
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANSLGQIMAINGVGHTMEGKFMM 121 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l 121 (155)
+......++|||+|||..+++++|+++|+.|| |..+.+..+ +|||||+|.+.++|.+|+ .|+|..++|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34456789999999999999999999999999 999998754 689999999999999999 899999999999
Q ss_pred EEEEeecCC
Q 031682 122 VMGMLFRHQ 130 (155)
Q Consensus 122 ~v~~~~~~~ 130 (155)
+|.|+.+++
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998764
No 121
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.77 E-value=4.1e-19 Score=112.37 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=71.4
Q ss_pred CCcCeEEEcCCCC------CCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCC-e
Q 031682 53 SSNTTIFVGGLDP------NVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGK-F 119 (155)
Q Consensus 53 ~~~~~l~v~~l~~------~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g-~ 119 (155)
...++|||+|||. .+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|+|..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 9999999999999999999998754 7999999999999999999999999999 9
Q ss_pred EEEEEEeecC
Q 031682 120 MMVMGMLFRH 129 (155)
Q Consensus 120 ~l~v~~~~~~ 129 (155)
+|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999864
No 122
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=109.11 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=72.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCee-EEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeE----E
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA-SVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFM----M 121 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~----l 121 (155)
...++|||+|||+.+++++|+++|++||.|. .+.+..+ +|||||+|.+.++|++|+..|+|..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 5679999999999999999999999999999 9998765 489999999999999999999999999999 9
Q ss_pred EEEEeecCC
Q 031682 122 VMGMLFRHQ 130 (155)
Q Consensus 122 ~v~~~~~~~ 130 (155)
+|.|+.+..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999998654
No 123
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=5.3e-18 Score=115.36 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=74.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999764 6899999999999999999999999999999999
Q ss_pred EeecCC
Q 031682 125 MLFRHQ 130 (155)
Q Consensus 125 ~~~~~~ 130 (155)
|+.+..
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998764
No 124
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=8.7e-19 Score=119.33 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=72.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
..++|||+|||+++++++|+++|+.|| .|..+.++.+ +|||||+|.+.++|.+|+..|+|..++|++|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 9999999765 68999999999999999999999999999999999
Q ss_pred eecCCCch
Q 031682 126 LFRHQMTQ 133 (155)
Q Consensus 126 ~~~~~~~~ 133 (155)
+.+....+
T Consensus 134 a~~~~~~~ 141 (156)
T 3n9u_C 134 ATRQNLSQ 141 (156)
T ss_dssp CCHHHHHH
T ss_pred cCCCcchh
Confidence 98765444
No 125
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=1.2e-17 Score=109.24 Aligned_cols=77 Identities=12% Similarity=0.030 Sum_probs=69.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCE-EEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEeecCC
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGC-GFVQFANSLGQIMAINGVGHTMEGK--FMMVMGMLFRHQ 130 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~-~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~~~~ 130 (155)
....|||+||++.+++++|+++|++||.|.++.+....|+ |||+|.+.++|..|++.|+|..|.| +.|+|.|++++.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 3456789999999999999999999999999988765696 9999999999999999999999977 699999999775
No 126
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=8.2e-19 Score=116.76 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=75.1
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
++.....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..|+|..+.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 444566789999999999999999999999999999999764 68999999999999999999999999999999
Q ss_pred EEEeecCC
Q 031682 123 MGMLFRHQ 130 (155)
Q Consensus 123 v~~~~~~~ 130 (155)
|.|+++..
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998764
No 127
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=110.29 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
+....+|||+|||+++++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+. +++..++|+.|.|.|+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 456789999999999999999999999999999999874 7999999999999999999 8999999999999987
Q ss_pred ec
Q 031682 127 FR 128 (155)
Q Consensus 127 ~~ 128 (155)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 64
No 128
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.3e-18 Score=109.55 Aligned_cols=81 Identities=21% Similarity=0.320 Sum_probs=72.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCe----eEEEEeCC--CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPVG--KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||+.+++++|+++|++||.| ..+.+... +|||||+|.+.++|..|+..|+|..+.|++|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4567899999999999999999999999988 55555533 79999999999999999999999999999999999
Q ss_pred eecCCCc
Q 031682 126 LFRHQMT 132 (155)
Q Consensus 126 ~~~~~~~ 132 (155)
+.++...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 129
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=4.7e-18 Score=115.53 Aligned_cols=79 Identities=19% Similarity=0.243 Sum_probs=73.5
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|++|+..|++..+.|++|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999999999999999999999999999999765 58999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+.+..
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98754
No 130
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.77 E-value=2.2e-18 Score=106.47 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=71.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
...++|||+|||+.+++++|+++|++| .|..+.+...+|||||+|.+.++|..|+..|+|..+.|++|+|.|+....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 356889999999999999999999999 99999988779999999999999999999999999999999999987543
No 131
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=7.1e-18 Score=106.58 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=69.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.+...++|||+|||+.+++++|+++|++||.|..+.... .+|||||+|.+.++|.+|+..|++..+.|++|+|.|+.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 446789999999999999999999999999873222111 279999999999999999999999999999999999987
Q ss_pred CCC
Q 031682 129 HQM 131 (155)
Q Consensus 129 ~~~ 131 (155)
+..
T Consensus 91 ~~~ 93 (101)
T 2fc9_A 91 RGS 93 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 132
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.76 E-value=3.5e-18 Score=117.25 Aligned_cols=82 Identities=15% Similarity=0.321 Sum_probs=74.2
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
......++|||+|||+.+++++|+.+|++||.|..|.+..+ +|||||+|.+.++|..|+..|+|..|.|++|.|
T Consensus 67 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 146 (165)
T 1rk8_A 67 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 146 (165)
T ss_dssp CCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999865 699999999999999999999999999999999
Q ss_pred EEeecCCC
Q 031682 124 GMLFRHQM 131 (155)
Q Consensus 124 ~~~~~~~~ 131 (155)
.|+.++..
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 99987654
No 133
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=5.6e-18 Score=104.22 Aligned_cols=75 Identities=20% Similarity=0.414 Sum_probs=68.4
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+. +++..++|++|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3467889999999999999999999999999999999765 6899999999999999996 48889999999998
Q ss_pred Ee
Q 031682 125 ML 126 (155)
Q Consensus 125 ~~ 126 (155)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 134
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-18 Score=106.96 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=70.7
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeE-EEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS-VKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
.....++|||+|||+.+++++|+++|.+||.|.. +.++.+ +|||||+|.+.++|.+|+.. ++..++|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 3356789999999999999999999999999987 777654 79999999999999999997 9999999999999
Q ss_pred EeecCC
Q 031682 125 MLFRHQ 130 (155)
Q Consensus 125 ~~~~~~ 130 (155)
++.+..
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 987654
No 135
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.1e-18 Score=106.45 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=69.2
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
.....++|||+|||+.+++++|+++|+.|+.+..+..... +|||||+|.+.++|..|+..|++..+.|++|+|.|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 90 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3467799999999999999999999998864433322111 6899999999999999999999999999999999999
Q ss_pred cCCCc
Q 031682 128 RHQMT 132 (155)
Q Consensus 128 ~~~~~ 132 (155)
++...
T Consensus 91 ~~~~~ 95 (102)
T 2fc8_A 91 PKGEG 95 (102)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87644
No 136
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=5.1e-18 Score=115.65 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=72.1
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEe
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANSLGQIMAINGVGHTMEGK--FMMVMGML 126 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~ 126 (155)
......+|||+||++.+++++|+++|++||.|.++.+... +|+|||+|.+.++|+.|++.|+|..+.| ++|+|.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 3455678999999999999999999999999999998643 6799999999999999999999999965 99999999
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
+++.
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 9764
No 137
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=109.74 Aligned_cols=79 Identities=15% Similarity=0.075 Sum_probs=71.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCe-eEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEI-ASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||+.+++++|+++|+.||.| ..+.++.+ +|||||+|.+.++|.+|+.. ++..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 3567899999999999999999999999999 78888764 79999999999999999987 99999999999999
Q ss_pred eecCCC
Q 031682 126 LFRHQM 131 (155)
Q Consensus 126 ~~~~~~ 131 (155)
+.++..
T Consensus 91 a~~~~~ 96 (114)
T 2cpy_A 91 VTLEDM 96 (114)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 987653
No 138
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=107.86 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=70.9
Q ss_pred CCCcCeEEEcCCCCCC------CHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCe-E
Q 031682 52 DSSNTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKF-M 120 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-~ 120 (155)
....++|||+|||+.+ ++++|+++|++||.|..+.++.. +|||||+|.+.++|..|+..|+|..+.|+ +
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 3457899999999999 77999999999999999998742 79999999999999999999999999998 9
Q ss_pred EEEEEeecC
Q 031682 121 MVMGMLFRH 129 (155)
Q Consensus 121 l~v~~~~~~ 129 (155)
|+|.|+...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998753
No 139
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=5.2e-18 Score=110.85 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=72.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQM 131 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 131 (155)
....++|||+|+ .+++++|+++|++||.|..+.+...+|||||+|.+.++|..|+..|+|..+.|++|+|.|+.+...
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 356789999996 699999999999999999999998899999999999999999999999999999999999998754
Q ss_pred ch
Q 031682 132 TQ 133 (155)
Q Consensus 132 ~~ 133 (155)
..
T Consensus 114 ~~ 115 (121)
T 2bz2_A 114 LD 115 (121)
T ss_dssp --
T ss_pred CC
Confidence 43
No 140
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.3e-19 Score=107.76 Aligned_cols=75 Identities=28% Similarity=0.411 Sum_probs=69.7
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|+.+++.|.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999998775 799999999999999999999999999999988765
Q ss_pred e
Q 031682 127 F 127 (155)
Q Consensus 127 ~ 127 (155)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 141
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=2.8e-18 Score=111.15 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=67.4
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeE-----EEEEEee
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFM-----MVMGMLF 127 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~-----l~v~~~~ 127 (155)
...++|||+|||+.+++++|+++|++||.|..+.+..+ |||||+|.+.++|+.|++.|+|..++|++ |+|....
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~ 92 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 92 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence 46789999999999999999999999999999999887 99999999999999999999999999988 7777766
Q ss_pred cC
Q 031682 128 RH 129 (155)
Q Consensus 128 ~~ 129 (155)
+.
T Consensus 93 ~~ 94 (115)
T 3beg_B 93 PR 94 (115)
T ss_dssp --
T ss_pred CC
Confidence 54
No 142
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.75 E-value=8.5e-18 Score=110.63 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=71.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CCE-EEEEeCCHHHHHHHHHhhCCcccCC--eEEEEEEee
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGC-GFVQFANSLGQIMAINGVGHTMEGK--FMMVMGMLF 127 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~-~fV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~~~ 127 (155)
....-.|||+||++.+++++|+++|++||.|.++.+... +|+ |||+|.+.++|..|++.|+|..+.| +.|+|.|++
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 355678899999999999999999999999999988654 677 9999999999999999999999987 999999999
Q ss_pred cCC
Q 031682 128 RHQ 130 (155)
Q Consensus 128 ~~~ 130 (155)
+..
T Consensus 105 ~~~ 107 (130)
T 3zzy_A 105 LTS 107 (130)
T ss_dssp CSS
T ss_pred CCc
Confidence 764
No 143
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.3e-18 Score=108.80 Aligned_cols=76 Identities=16% Similarity=0.080 Sum_probs=67.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
+..++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|.+|+..|++..+.|++|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999887666542 699999999999999999999999999999999987
Q ss_pred ec
Q 031682 127 FR 128 (155)
Q Consensus 127 ~~ 128 (155)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 144
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=5.4e-18 Score=110.27 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=71.3
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
....++|||+|||+.+++++|+++|+.||. |..+.++.+ +|||||+|.+.++|++|+. +++..++|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999998 888888764 6899999999999999999 9999999999999
Q ss_pred EEeecCC
Q 031682 124 GMLFRHQ 130 (155)
Q Consensus 124 ~~~~~~~ 130 (155)
.++.++.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 145
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=3.2e-18 Score=117.49 Aligned_cols=100 Identities=23% Similarity=0.439 Sum_probs=84.0
Q ss_pred CccCCeeeC---CeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcc
Q 031682 2 TEMNGVYCS---SRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQ 78 (155)
Q Consensus 2 ~~mnG~~l~---gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~ 78 (155)
+.|||..+. ++++.+.++.+.... .....+|||+|||..+++++|+++|++
T Consensus 65 ~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~ 118 (175)
T 3nmr_A 65 NALHNMKVLPGMHHPIQMKPADSEKNN--------------------------AVEDRKLFIGMISKKCTENDIRVMFSS 118 (175)
T ss_dssp HHHTTTCCCTTCSSCCEEEECGGGCCS--------------------------CGGGSEEEEESCCTTCCHHHHHHHHGG
T ss_pred HHhcCcEEccCCccceEEccccccccc--------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHh
Confidence 357777665 677888777654322 235678999999999999999999999
Q ss_pred cCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccC---CeEEEEEEee
Q 031682 79 YGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEG---KFMMVMGMLF 127 (155)
Q Consensus 79 ~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~~~ 127 (155)
||.|..+.+..+ +|+|||+|.+.++|.+|+..|+|..+. +++|+|.|+.
T Consensus 119 ~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 119 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp GSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999876 789999999999999999999998765 4999999973
No 146
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.74 E-value=8.1e-19 Score=119.80 Aligned_cols=96 Identities=20% Similarity=0.304 Sum_probs=84.3
Q ss_pred CeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEE
Q 031682 6 GVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASV 85 (155)
Q Consensus 6 G~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~ 85 (155)
+..+.|++|+|.++.++... ....+|||+|||+.+++++|+++|++||.|..+
T Consensus 65 ~~~~~g~~i~v~~~~~~~~~---------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~ 117 (167)
T 2cjk_A 65 QHILDGKVIDPKRAIPRDEQ---------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDA 117 (167)
T ss_dssp CCEETTEECCCEECCCHHHH---------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEE
T ss_pred ccccCCeEcccccccchhhc---------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEE
Confidence 56788999999887754321 235689999999999999999999999999999
Q ss_pred EEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 86 KIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 86 ~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
.+..+ +|+|||+|.+.++|.+|+. +++..++|++|+|.|+.|+
T Consensus 118 ~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 118 QLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 98765 5899999999999999998 8999999999999999876
No 147
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-18 Score=112.66 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC------CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV------GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||+.+++++|+++|..||.|..+.++. .+|||||+|.+.++|..|+. +++..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 35668999999999999999999999999987633322 17999999999999999999 999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+.++.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 98754
No 148
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=9.4e-18 Score=105.03 Aligned_cols=80 Identities=15% Similarity=0.138 Sum_probs=71.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.....++|||+|||+.+++++|+++|++||.|..+ ... .+|||||+|.+.++|..|+..|+|..+.|++|+|.|+.+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 34567899999999999999999999999988777 222 279999999999999999999999999999999999987
Q ss_pred CCC
Q 031682 129 HQM 131 (155)
Q Consensus 129 ~~~ 131 (155)
+..
T Consensus 91 ~~~ 93 (96)
T 1fjc_A 91 KGG 93 (96)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 149
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=109.01 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEe------CCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIP------VGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~------~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
....++|||+|||+.+++++|+++|++||.|.. .++ ..+|||||+|.+.++|.+|++ |+|..+.|++|+|.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999997665 222 338999999999999999998 999999999999999
Q ss_pred eecCCC
Q 031682 126 LFRHQM 131 (155)
Q Consensus 126 ~~~~~~ 131 (155)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987654
No 150
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=103.25 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=67.5
Q ss_pred CCcCe-EEEcCCCCCCCHHH----HHHHhcccC-CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTT-IFVGGLDPNVTDED----LRQPFSQYG-EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~-l~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
++..+ |||+|||+.+++++ |+++|++|| +|.++. .|+|||.|.+.++|.+|++.|+|..+.|++|+|.|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 34555 99999999999987 558999995 999982 499999999999999999999999999999999999
Q ss_pred ecCCCch
Q 031682 127 FRHQMTQ 133 (155)
Q Consensus 127 ~~~~~~~ 133 (155)
+.++...
T Consensus 82 ~~~sd~~ 88 (96)
T 2diu_A 82 PKNRELC 88 (96)
T ss_dssp CCSCCCC
T ss_pred CCCccee
Confidence 9876443
No 151
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=1.8e-17 Score=102.65 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=62.8
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcc--cCCeEEEEEEee
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTM--EGKFMMVMGMLF 127 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~--~~g~~l~v~~~~ 127 (155)
......+|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.. +++.. +.|++|.|.++.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 3467899999999999999999999999999999999876 8999999999999884 45554 569999999998
Q ss_pred cCCC
Q 031682 128 RHQM 131 (155)
Q Consensus 128 ~~~~ 131 (155)
++..
T Consensus 83 ~k~~ 86 (89)
T 3d2w_A 83 PKHN 86 (89)
T ss_dssp ----
T ss_pred CCCc
Confidence 7653
No 152
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=1.4e-17 Score=102.26 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=68.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMM 121 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l 121 (155)
...++|||+|||+.+++++|+++|++| | .|..+.+..++|||||+|.+.++|..|+ .|+|..+.|++|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 457899999999999999999999999 8 9999999999999999999999999999 999999999999
Q ss_pred EEEE
Q 031682 122 VMGM 125 (155)
Q Consensus 122 ~v~~ 125 (155)
+|..
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9863
No 153
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=3.9e-18 Score=102.10 Aligned_cols=69 Identities=28% Similarity=0.404 Sum_probs=64.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 57 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
+|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|++|++ +++..++|++|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999998765 5899999999999999998 9999999999999875
No 154
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=8.2e-18 Score=110.09 Aligned_cols=77 Identities=22% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+ .|+|..++|++|+|.|+
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 34689999999999999999999999999999998754 789999999999999999 79999999999999999
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
++..
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8654
No 155
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.73 E-value=2.1e-17 Score=117.17 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=71.7
Q ss_pred CcCeEEEcCCC-CCCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 54 SNTTIFVGGLD-PNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 54 ~~~~l~v~~l~-~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
..++|||+||| +.+++++|+++|++||.|.++.+..+ +|+|||+|.+.++|..|++.|+|..+.|++|+|.|++..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 56899999999 89999999999999999999999886 799999999999999999999999999999999999743
No 156
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=6.9e-18 Score=112.31 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=72.0
Q ss_pred CCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeE
Q 031682 49 SEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFM 120 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 120 (155)
.+.....++|||+|||+++++++|+++|++||. |..+.++.+ +|||||+|.+.++|++|+. +++..++|+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 344466789999999999999999999999998 788888765 6899999999999999999 9999999999
Q ss_pred EEEEEeecC
Q 031682 121 MVMGMLFRH 129 (155)
Q Consensus 121 l~v~~~~~~ 129 (155)
|+|.++.++
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999998654
No 157
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.6e-18 Score=107.35 Aligned_cols=75 Identities=27% Similarity=0.335 Sum_probs=66.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.+ |..|+..|+|..++|++|+|.|+.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 57999999999999999999999999999999764 789999999999 99999999999999999999999876
Q ss_pred CC
Q 031682 130 QM 131 (155)
Q Consensus 130 ~~ 131 (155)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 158
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.73 E-value=7.5e-18 Score=121.63 Aligned_cols=83 Identities=23% Similarity=0.399 Sum_probs=72.7
Q ss_pred CCCcCeEEEcCCCCCC---------CHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCccc------
Q 031682 52 DSSNTTIFVGGLDPNV---------TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTME------ 116 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~------ 116 (155)
+...++|||+||+..+ ++++|+++|++||.|.+|.++.++|||||+|.+.++|+.|++.|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 4678999999999998 6999999999999999999999999999999999999999999999999
Q ss_pred ------CCeEEEEEEeecCCCchh
Q 031682 117 ------GKFMMVMGMLFRHQMTQA 134 (155)
Q Consensus 117 ------~g~~l~v~~~~~~~~~~~ 134 (155)
.|+.|.|.|+.+.+...+
T Consensus 211 e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp TGGGGGGSCCCEEEECC-------
T ss_pred cccccCCCCEEEEEEccCCCCHHH
Confidence 899999999997765433
No 159
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-18 Score=102.98 Aligned_cols=69 Identities=19% Similarity=0.271 Sum_probs=63.5
Q ss_pred cCeEEEcCCCCCC------CHHHHHHHhcccCCeeEEEEeCC----CCEEEEEeCCHHHHHHHHHhhCCcccCCe-EEEE
Q 031682 55 NTTIFVGGLDPNV------TDEDLRQPFSQYGEIASVKIPVG----KGCGFVQFANSLGQIMAINGVGHTMEGKF-MMVM 123 (155)
Q Consensus 55 ~~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~-~l~v 123 (155)
+++|||+|||..+ ++++|+++|++||.|..+.++.. +|||||+|.+.++|..|+..|+|..++|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 67999999999999999998742 79999999999999999999999999999 8876
No 160
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=102.06 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=68.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCC-EEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKG-CGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g-~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
....+|||+|||+.+++++|+++|++||.|..|.+....+ ||||+|.+.++|..|+. |+|..++|++|+|.++.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 4567999999999999999999999999999983333322 99999999999999999 99999999999999887654
No 161
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=105.41 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=68.9
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
.....+|||+|||+.+++++|+++|+.| .|..+.++.+ +|+|||+|.+.++|.+|+ .+++..++|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 3456899999999999999999999999 8999999764 799999999999999999 68999999999999887
Q ss_pred ecC
Q 031682 127 FRH 129 (155)
Q Consensus 127 ~~~ 129 (155)
.+.
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 162
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-18 Score=101.40 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=65.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|.+|+..++ ..++|++|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999765 6899999999999999999999 9999999999986
No 163
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.8e-17 Score=104.28 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=68.8
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
....++|||+|||+++++++|+++|++||. ..+.++.+ +|||||+|.+.++|++|+. +++..++|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356789999999999999999999999994 48888765 6899999999999999995 7999999999999998
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 164
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.72 E-value=3.6e-17 Score=120.78 Aligned_cols=96 Identities=14% Similarity=0.215 Sum_probs=87.3
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
+.|||..+.|++|+|.++. ..++|||+|||+.+++++|+++|+.||.
T Consensus 75 ~~l~~~~~~g~~i~v~~~~---------------------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~ 121 (284)
T 3smz_A 75 NAFHQSRLRERELSVQLQP---------------------------------TDALLCVANLPPSLTQQQFEELVRPFGS 121 (284)
T ss_dssp HHHTTCEETTEECEEEECC---------------------------------CSCEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCCeeCCeEEEEEecC---------------------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCC
Confidence 4689999999999999843 2368999999999999999999999999
Q ss_pred eeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 82 IASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 82 i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
|..+.+..+ +|+|||+|.+.++|..|+..|+|..++|++|.|.|+.+..
T Consensus 122 i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~ 176 (284)
T 3smz_A 122 LERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ 176 (284)
T ss_dssp EEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred eeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 999988754 6899999999999999999999999999999999998765
No 165
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=1.5e-17 Score=119.82 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=70.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccC--CeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYG--EIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
..++|||+||++.+++++|+++|++|| .|..|.|+.+ +|||||+|.+.++|.+||..|++..|.|++|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 9999999765 68999999999999999999999999999999999
Q ss_pred eecCC
Q 031682 126 LFRHQ 130 (155)
Q Consensus 126 ~~~~~ 130 (155)
+.+..
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 97643
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=6.2e-17 Score=115.17 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=71.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
.+.++|||+|||+++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|+..+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45689999999999999999999999999999999764 689999999999999999999999999999999998
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7553
No 167
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=9.3e-18 Score=107.29 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=71.2
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCC---eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGE---IASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
....++|||+|||+++++++|+++|+.||. |..+.++.+ +|+|||+|.+.++|..|+. +++..++|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 356789999999999999999999999987 889988765 7899999999999999999 9999999999999
Q ss_pred EEeecCC
Q 031682 124 GMLFRHQ 130 (155)
Q Consensus 124 ~~~~~~~ 130 (155)
.++.++.
T Consensus 87 ~~a~~~~ 93 (107)
T 2lmi_A 87 YEINNED 93 (107)
T ss_dssp EECCHHH
T ss_pred EECCHHH
Confidence 9987654
No 168
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.70 E-value=6.4e-17 Score=112.22 Aligned_cols=79 Identities=16% Similarity=0.266 Sum_probs=73.0
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
....++|||+|||+.+++++|+++|++||.|..|.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345689999999999999999999999999999999764 699999999999999999999999999999999999
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
.+..
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 8653
No 169
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=109.52 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=70.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEe---CCCCEEEEEeCCHHHHHHHHHhhCCcccCCeE
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIP---VGKGCGFVQFANSLGQIMAINGVGHTMEGKFM 120 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~---~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 120 (155)
....++|||+|||+.+++++|+++|++||.|.. +.+. ..+|||||+|.+.++|..|+..|+|..+.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 346789999999999999999999999998865 3222 34799999999999999999999999999999
Q ss_pred EEEEEeecCCCc
Q 031682 121 MVMGMLFRHQMT 132 (155)
Q Consensus 121 l~v~~~~~~~~~ 132 (155)
|+|.|+++....
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999876543
No 170
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-18 Score=112.84 Aligned_cols=81 Identities=28% Similarity=0.296 Sum_probs=73.4
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeE--------EEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIAS--------VKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEG 117 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~ 117 (155)
....++|||+|||..+++++|+++|++||.|.. +.+..+ +|||||+|.+.++|..|+..|+|..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999988 777654 689999999999999999999999999
Q ss_pred CeEEEEEEeecCCCc
Q 031682 118 KFMMVMGMLFRHQMT 132 (155)
Q Consensus 118 g~~l~v~~~~~~~~~ 132 (155)
|++|+|.|+.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999877543
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.9e-17 Score=100.22 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=67.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCC
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQM 131 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 131 (155)
...++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|++++.. ...+.|++|+|.|+.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 45789999999999999999999999999999999876 89999999999999765321 3356999999999987754
Q ss_pred c
Q 031682 132 T 132 (155)
Q Consensus 132 ~ 132 (155)
.
T Consensus 81 ~ 81 (88)
T 1wf0_A 81 S 81 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 172
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.69 E-value=3e-17 Score=103.88 Aligned_cols=77 Identities=30% Similarity=0.510 Sum_probs=71.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
....++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+. ++..++|++|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 356789999999999999999999999999999999874 6999999999999999998 899999999999999
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
.++.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 8764
No 173
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=2.5e-17 Score=98.50 Aligned_cols=69 Identities=26% Similarity=0.515 Sum_probs=64.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 57 TIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 57 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
+|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+.. ++..+.|++|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999988764 79999999999999999985 889999999999875
No 174
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=7.7e-17 Score=118.01 Aligned_cols=95 Identities=31% Similarity=0.446 Sum_probs=84.5
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGE 81 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 81 (155)
..|||..++|++|+|.++.+ ..+|||+|||+.+++++|+++|+.||.
T Consensus 76 ~~l~g~~i~g~~l~v~~a~~---------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~ 122 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFATH---------------------------------GAALTVKNLSPVVSNELLEQAFSQFGP 122 (261)
T ss_dssp HHHTTCEETTEECEEEECCC---------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred HHcCCcEECCceeEeeeccc---------------------------------CCcccccCCCCCCCHHHHHHHHHhcCC
Confidence 46899999999999999863 357999999999999999999999999
Q ss_pred eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCC-cccC---CeEEEEEEeecC
Q 031682 82 IASVKIPVG-----KGCGFVQFANSLGQIMAINGVGH-TMEG---KFMMVMGMLFRH 129 (155)
Q Consensus 82 i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g-~~~~---g~~l~v~~~~~~ 129 (155)
|..+.+..+ +|+|||+|.+.++|.+|+..|++ ..+. +++|.|.++.+.
T Consensus 123 i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 123 VEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred eEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999998765 79999999999999999999954 4444 899999999865
No 175
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.68 E-value=2.4e-16 Score=116.76 Aligned_cols=94 Identities=9% Similarity=0.180 Sum_probs=85.3
Q ss_pred ccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC-C
Q 031682 3 EMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG-E 81 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~ 81 (155)
+|||..++|++|+|.++. .++|||+|||+.+++++|+++|+.|| .
T Consensus 99 ~~~~~~~~g~~i~v~~~~----------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~ 144 (292)
T 2ghp_A 99 TKTHKVVGQNEIIVSHLT----------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVV 144 (292)
T ss_dssp TTTTCEETTEECEEEECC----------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCC
T ss_pred HhCCcEeCCcEEEEEECC----------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCC
Confidence 489999999999999852 57899999999999999999999999 9
Q ss_pred eeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 82 IASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 82 i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
|..+.+..+ +|||||+|.+.++|..|+..|+|..+.|++|.|.|+.+..
T Consensus 145 i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 145 ALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp CCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred eEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 999998763 7999999999999999999999999999999999998654
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.68 E-value=2.7e-16 Score=106.95 Aligned_cols=76 Identities=28% Similarity=0.352 Sum_probs=71.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC------CEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK------GCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~------g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
.++|||+|||+.+++++|+++|+.||.|..+.+..++ |+|||+|.+.++|..|+..|+|..+.|++|+|.|+.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5789999999999999999999999999999998763 9999999999999999999999999999999999986
Q ss_pred CC
Q 031682 129 HQ 130 (155)
Q Consensus 129 ~~ 130 (155)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 177
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=2.6e-16 Score=122.92 Aligned_cols=79 Identities=16% Similarity=0.305 Sum_probs=73.5
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|..||..|+|..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999764 799999999999999999999999999999999999
Q ss_pred ecCCC
Q 031682 127 FRHQM 131 (155)
Q Consensus 127 ~~~~~ 131 (155)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87654
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=6.6e-17 Score=106.14 Aligned_cols=77 Identities=25% Similarity=0.274 Sum_probs=68.0
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCee--EEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA--SVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
......+|||+|||+++++++|+++|++| .|. .|.++.+ +|||||+|.+.++|.+|+.. ++..++|+.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567889999999999999999999999 677 8888765 79999999999999999985 779999999999
Q ss_pred EEeecC
Q 031682 124 GMLFRH 129 (155)
Q Consensus 124 ~~~~~~ 129 (155)
.++.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 888654
No 179
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.7e-17 Score=109.80 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=69.6
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.....++|||+|||+++++++|+++|++|| +..+.++.+ +|||||+|.+.++|++|+ .+++..++|+.|+|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678999999999999999999999999 778988765 799999999999999999 7899999999999999
Q ss_pred eecCCC
Q 031682 126 LFRHQM 131 (155)
Q Consensus 126 ~~~~~~ 131 (155)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 887653
No 180
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=3e-16 Score=106.97 Aligned_cols=77 Identities=23% Similarity=0.282 Sum_probs=71.7
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
+.++|||+|||+++++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..++|..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 4689999999999999999999999999999998754 5899999999999999999999999999999999998
Q ss_pred cCC
Q 031682 128 RHQ 130 (155)
Q Consensus 128 ~~~ 130 (155)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 754
No 181
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.6e-17 Score=106.15 Aligned_cols=81 Identities=20% Similarity=0.146 Sum_probs=70.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCe----eEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEI----ASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
...++|||+|||+++++++|+++|++||.| ..|.++.+ +|||||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 557899999999999999999999999875 57777654 69999999999999999996 999999999999
Q ss_pred EEeecCCCchh
Q 031682 124 GMLFRHQMTQA 134 (155)
Q Consensus 124 ~~~~~~~~~~~ 134 (155)
..+.++.....
T Consensus 100 ~~a~~~e~~~~ 110 (123)
T 2dha_A 100 FRSTAAEVQQV 110 (123)
T ss_dssp EEECHHHHHHH
T ss_pred EECCHHHHHHH
Confidence 98876543333
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.67 E-value=5.7e-16 Score=113.38 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=74.1
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
....++|||+|||+++++++|+++|+.||.|..+.+..++|||||+|.+.++|..|+..++|..+.|++|+|.|+.+.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999999763
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.66 E-value=3.8e-16 Score=112.20 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=73.5
Q ss_pred CCCcCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 52 DSSNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 52 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
....++|||+|||+ .+++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|++.|+|..+.|++|+|.|+.+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 35679999999999 9999999999999999999999887 699999999999999999999999999999999999855
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=9.3e-16 Score=113.04 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=73.3
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHH----HHhcccCCeeEEEEeCC---CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLR----QPFSQYGEIASVKIPVG---KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~---~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
+....++|||+|||+.+++++|+ ++|++||.|..|.+..+ +|||||+|.+.++|..|+..|+|..+.|++|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 34678999999999999999966 89999999999998763 799999999999999999999999999999999
Q ss_pred EEeecCC
Q 031682 124 GMLFRHQ 130 (155)
Q Consensus 124 ~~~~~~~ 130 (155)
.|+.+..
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9998655
No 185
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.3e-16 Score=105.35 Aligned_cols=75 Identities=25% Similarity=0.420 Sum_probs=70.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCC
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQ 130 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~ 130 (155)
++|||+|||.++++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..++|..+.|++|+|.|+.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 47999999999999999999999999999999765 5899999999999999999999999999999999997654
No 186
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.65 E-value=6.8e-16 Score=107.76 Aligned_cols=80 Identities=24% Similarity=0.354 Sum_probs=71.4
Q ss_pred CCCCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 50 EGDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 50 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
......++|||+|||+.+++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+.. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 34467889999999999999999999999999999998764 68999999999999999986 899999999999
Q ss_pred EEeecCC
Q 031682 124 GMLFRHQ 130 (155)
Q Consensus 124 ~~~~~~~ 130 (155)
.++.+..
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9997654
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-15 Score=95.37 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=68.5
Q ss_pred CCCcCeEEEcCCCCCCC-----------HHHHHHHhcccCCeeEEEEeC--CCCEEEEEeCCHHHHHHHHHhhCCcccCC
Q 031682 52 DSSNTTIFVGGLDPNVT-----------DEDLRQPFSQYGEIASVKIPV--GKGCGFVQFANSLGQIMAINGVGHTMEGK 118 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~i~~~~~~~--~~g~~fV~f~~~~~a~~a~~~l~g~~~~g 118 (155)
.....+|+|.||..... +++|+++|++||.|..+.+.. .+|||||+|.+.++|.+|+..|+|..++|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 35688999999954432 579999999999999997743 27999999999999999999999999999
Q ss_pred eEEEEEEeecCC
Q 031682 119 FMMVMGMLFRHQ 130 (155)
Q Consensus 119 ~~l~v~~~~~~~ 130 (155)
++|+|.|+.++.
T Consensus 92 r~l~v~~a~~~~ 103 (112)
T 2dit_A 92 RQITAQAWDGTT 103 (112)
T ss_dssp EECEEEECCSCC
T ss_pred cEEEEEEeCCCC
Confidence 999999998754
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=8.1e-16 Score=107.82 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=71.9
Q ss_pred CcCeEEEcCCCC-CCCHHHHHHHhcccCCeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecC
Q 031682 54 SNTTIFVGGLDP-NVTDEDLRQPFSQYGEIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 54 ~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~ 129 (155)
..++|||+|||+ .+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..|+|..+.|++|+|.|+.+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 358999999999 9999999999999999999999887 699999999999999999999999999999999999865
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=3.8e-15 Score=94.84 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=67.2
Q ss_pred CCcCeEEEcCCCC-----CCCHHHHHHHhcccCCeeEEEEeCC-------CCEEEEEeCCHHHHHHHHHhhCCcccCCeE
Q 031682 53 SSNTTIFVGGLDP-----NVTDEDLRQPFSQYGEIASVKIPVG-------KGCGFVQFANSLGQIMAINGVGHTMEGKFM 120 (155)
Q Consensus 53 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~i~~~~~~~~-------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 120 (155)
.++.+|+|.||.. +-.+++|++.|++||.|.++.++.+ +|++||+|.+.++|.+|+..|+|..++|++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4578899999963 2367999999999999999998753 799999999999999999999999999999
Q ss_pred EEEEEeec
Q 031682 121 MVMGMLFR 128 (155)
Q Consensus 121 l~v~~~~~ 128 (155)
|+|.|+.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=2.4e-15 Score=106.48 Aligned_cols=78 Identities=21% Similarity=0.392 Sum_probs=71.2
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEe
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGML 126 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~ 126 (155)
...++|||+|||.++++++|+++|+.||.|..+.+..+ +|||||+|.+.++|..|+..|++..+.|++|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45689999999999999999999999999999999764 799999999999999999999999999999999988
Q ss_pred ecCC
Q 031682 127 FRHQ 130 (155)
Q Consensus 127 ~~~~ 130 (155)
.+..
T Consensus 106 ~~~~ 109 (216)
T 2qfj_A 106 SNIG 109 (216)
T ss_dssp SCCG
T ss_pred CCcc
Confidence 7654
No 191
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=3.6e-15 Score=102.04 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=70.5
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
..++|||+|||+++++++|+++|++| | .|..+.+..++|+|||+|.+.++|..|+ .++|..+.|++|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~ 81 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceee
Confidence 46899999999999999999999999 7 8899999999999999999999999999 8999999999999
Q ss_pred EEEeecC
Q 031682 123 MGMLFRH 129 (155)
Q Consensus 123 v~~~~~~ 129 (155)
|.++.+.
T Consensus 82 v~~~~~~ 88 (172)
T 2g4b_A 82 IRRPHDY 88 (172)
T ss_dssp EECCSSC
T ss_pred ecCCccc
Confidence 9998754
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.2e-15 Score=96.42 Aligned_cols=72 Identities=24% Similarity=0.446 Sum_probs=60.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC---------CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV---------GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~---------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
...++|||+|||+.+++++|+++|++||.|. +.++. .+|||||+|.+.++|.+|+..|+ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 66653 27999999999999999999883 367777666
Q ss_pred EEee
Q 031682 124 GMLF 127 (155)
Q Consensus 124 ~~~~ 127 (155)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5444
No 193
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=5e-15 Score=103.48 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=69.8
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhccc----C-------CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQY----G-------EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
..++|||+|||+++++++|+++|+.| | .|..+.+..++|||||+|.+.++|..|+ .|+|..+.|++|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 6 7888888888999999999999999999 8999999999999
Q ss_pred EEEeecC
Q 031682 123 MGMLFRH 129 (155)
Q Consensus 123 v~~~~~~ 129 (155)
|.++.+.
T Consensus 82 v~~~~~~ 88 (198)
T 2yh0_A 82 IRRPHDY 88 (198)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998765
No 194
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=4.5e-15 Score=104.22 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=67.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
..++|||+|||+.+++++|+++|++||.|..+.++.+ +|||||+|.+.++|..|+..+ +..++|++|.|.|...
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999999999864 799999999999999999865 4589999999998764
No 195
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.3e-15 Score=98.09 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=64.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCC----H-HH---HHHHHH--hhCCcc
Q 031682 56 TTIFVGGL----DPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFAN----S-LG---QIMAIN--GVGHTM 115 (155)
Q Consensus 56 ~~l~v~~l----~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~----~-~~---a~~a~~--~l~g~~ 115 (155)
..|||+|| |+.+++..|+.+|++||+|.++.++.| +|||||+|.+ . ++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999876 7999999995 3 22 888988 789999
Q ss_pred cCCeEEEEEEeec
Q 031682 116 EGKFMMVMGMLFR 128 (155)
Q Consensus 116 ~~g~~l~v~~~~~ 128 (155)
++|++|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998764
No 196
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.57 E-value=9.4e-15 Score=100.02 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=68.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeC--------CCCEEEEEeCCHHHHHHHHHhhCCcccC---CeEEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPV--------GKGCGFVQFANSLGQIMAINGVGHTMEG---KFMMV 122 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~--------~~g~~fV~f~~~~~a~~a~~~l~g~~~~---g~~l~ 122 (155)
..++|||+|||+.+++++|+++|++||.|..+.+.. .+|||||+|.+.++|..|+..|++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 467999999999999999999999999999999874 3689999999999999999999998765 67788
Q ss_pred EEEeecCC
Q 031682 123 MGMLFRHQ 130 (155)
Q Consensus 123 v~~~~~~~ 130 (155)
+.++.+..
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88877554
No 197
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.57 E-value=9.7e-15 Score=110.46 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=69.9
Q ss_pred CCCCcCeEEEcC--CCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCccc---CCe--EEEE
Q 031682 51 GDSSNTTIFVGG--LDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTME---GKF--MMVM 123 (155)
Q Consensus 51 ~~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~---~g~--~l~v 123 (155)
.+.++.+|||+| |++.+++++|+++|++||+|.++.+..+||||||+|.+.++|++|++.|||..+ .|+ .|++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 356788999998 578999999999999999999999988999999999999999999999999976 244 6888
Q ss_pred EEeecC
Q 031682 124 GMLFRH 129 (155)
Q Consensus 124 ~~~~~~ 129 (155)
.|....
T Consensus 94 ~~~~~~ 99 (345)
T 3tht_A 94 NFVEKV 99 (345)
T ss_dssp EECSSE
T ss_pred EEeecc
Confidence 888543
No 198
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=1.3e-14 Score=98.81 Aligned_cols=74 Identities=22% Similarity=0.441 Sum_probs=67.1
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC------CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG------KGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~------~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
+.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|..|+.. +..++|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4689999999999999999999999999999999765 69999999999999999984 678999999998886
Q ss_pred cC
Q 031682 128 RH 129 (155)
Q Consensus 128 ~~ 129 (155)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 54
No 199
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=4.2e-14 Score=97.07 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=68.5
Q ss_pred CCCCcCeEEEcCCCCCCCHHHHHHHhcccCCee-----EEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 51 GDSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIA-----SVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 51 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~-----~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
.....++|||+|||..+++++|+++|..||.+. .......+|||||+|.+.++|..|++ |+|..+.|++|+|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 346789999999999999999999999987543 33344458999999999999999995 999999999999999
Q ss_pred eecCCC
Q 031682 126 LFRHQM 131 (155)
Q Consensus 126 ~~~~~~ 131 (155)
+.+...
T Consensus 88 ~~~~~~ 93 (175)
T 1fje_B 88 PKGRDS 93 (175)
T ss_dssp CCCSSC
T ss_pred CCCccc
Confidence 987543
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=7.3e-14 Score=88.84 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=66.0
Q ss_pred CCcCeEEEcCCCC--CCC--------HHHHHHHhcccCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 53 SSNTTIFVGGLDP--NVT--------DEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 53 ~~~~~l~v~~l~~--~~~--------~~~l~~~f~~~g~i~~~~~~~~--------~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
.+++.|.+.|+-. ++. +++|++.|++||.|.++.++.+ +|++||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3567888999833 333 2689999999999999999754 699999999999999999999999
Q ss_pred ccCCeEEEEEEeecC
Q 031682 115 MEGKFMMVMGMLFRH 129 (155)
Q Consensus 115 ~~~g~~l~v~~~~~~ 129 (155)
.++|++|+|.|....
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999998643
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.2e-14 Score=92.28 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=59.1
Q ss_pred EcCCCCCCCHHHHHHHh------------cccCCeeEEEEeCC-----CCEEEEEeCCHHHHHHHHHhhCCcccCCeEEE
Q 031682 60 VGGLDPNVTDEDLRQPF------------SQYGEIASVKIPVG-----KGCGFVQFANSLGQIMAINGVGHTMEGKFMMV 122 (155)
Q Consensus 60 v~~l~~~~~~~~l~~~f------------~~~g~i~~~~~~~~-----~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~ 122 (155)
+.+|++.+++++|++.| ++||.|.++.++.+ +|+|||+|.+.++|.+|+..|+|..++|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45677777777777666 99999999999865 79999999999999999999999999999999
Q ss_pred EEEe
Q 031682 123 MGML 126 (155)
Q Consensus 123 v~~~ 126 (155)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.2e-13 Score=82.95 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHhcccCCeeEEEEeC-CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeecCCC
Q 031682 65 PNVTDEDLRQPFSQYGEIASVKIPV-GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFRHQM 131 (155)
Q Consensus 65 ~~~~~~~l~~~f~~~g~i~~~~~~~-~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~~~~ 131 (155)
..+++++|+++|++||.|..+.++. .+|||||+|.+.++|+.|+..+++ +.|++|+|.|+.+++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 4589999999999999999999974 489999999999999999997544 6799999999987653
No 203
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=3.4e-13 Score=87.45 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=65.6
Q ss_pred CcCeEEEcCCCCC--C---CHHHHHHHhcccCCeeEEEEeCC----------CCEEEEEeCCHHHHHHHHHhhCCcccCC
Q 031682 54 SNTTIFVGGLDPN--V---TDEDLRQPFSQYGEIASVKIPVG----------KGCGFVQFANSLGQIMAINGVGHTMEGK 118 (155)
Q Consensus 54 ~~~~l~v~~l~~~--~---~~~~l~~~f~~~g~i~~~~~~~~----------~g~~fV~f~~~~~a~~a~~~l~g~~~~g 118 (155)
++++|++.|+-.. + -+++|++.|++||.|.++.++.+ +|++||+|.+.++|.+|+..|+|+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5788999998432 2 36899999999999999998754 3899999999999999999999999999
Q ss_pred eEEEEEEeec
Q 031682 119 FMMVMGMLFR 128 (155)
Q Consensus 119 ~~l~v~~~~~ 128 (155)
+.|+|.|...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999864
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.46 E-value=7e-13 Score=85.42 Aligned_cols=76 Identities=12% Similarity=0.144 Sum_probs=65.0
Q ss_pred CcCeEEEcCCCCCCC----------HHHHHHHhcccCCeeEEEEeCC--CCEEEEEeCCHHHHHHHHHhhCCcccCCeEE
Q 031682 54 SNTTIFVGGLDPNVT----------DEDLRQPFSQYGEIASVKIPVG--KGCGFVQFANSLGQIMAINGVGHTMEGKFMM 121 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~i~~~~~~~~--~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l 121 (155)
+++.|.+.|+-..-. +++|++.|++||.|.++.+..+ +|++||+|.+.++|.+|+..|||+.++|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 466788888743221 2478999999999999999876 7999999999999999999999999999999
Q ss_pred EEEEeecC
Q 031682 122 VMGMLFRH 129 (155)
Q Consensus 122 ~v~~~~~~ 129 (155)
+|.|....
T Consensus 86 ~v~~~~~~ 93 (114)
T 3s6e_A 86 TAAYVPLP 93 (114)
T ss_dssp EEEEECHH
T ss_pred EEEEEcHH
Confidence 99998643
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.6e-11 Score=79.53 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=70.7
Q ss_pred CCCCCCcCeEEEcCCCCC-CCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCC-HHHHHHHHHhhC--CcccCCeEEEEE
Q 031682 49 SEGDSSNTTIFVGGLDPN-VTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN-SLGQIMAINGVG--HTMEGKFMMVMG 124 (155)
Q Consensus 49 ~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~-~~~a~~a~~~l~--g~~~~g~~l~v~ 124 (155)
.-.-+.++.|||+||++. ++.++|+++|++||+|..|.+..+.-.|||.|.+ .++|..|+..++ +..+.|..+++.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 334578899999999999 9999999999999999999999998899999999 899999999984 668899888886
Q ss_pred Eeec
Q 031682 125 MLFR 128 (155)
Q Consensus 125 ~~~~ 128 (155)
...-
T Consensus 92 vL~G 95 (121)
T 1owx_A 92 VLEG 95 (121)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 6543
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=1.7e-11 Score=74.93 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=64.1
Q ss_pred CCcCeEEEcCCCC----C-CCH---HHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEE
Q 031682 53 SSNTTIFVGGLDP----N-VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMG 124 (155)
Q Consensus 53 ~~~~~l~v~~l~~----~-~~~---~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 124 (155)
++..+|+|.-.+. . .++ .+|...|.+||.|..+++..++ +||+|.+.++|.+|+. |+|..+.|+.|+|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 4567788876652 2 232 5788999999999999999875 8999999999999998 99999999999999
Q ss_pred EeecCCC
Q 031682 125 MLFRHQM 131 (155)
Q Consensus 125 ~~~~~~~ 131 (155)
++.+...
T Consensus 82 lkt~dW~ 88 (91)
T 2dnr_A 82 LKSPSGP 88 (91)
T ss_dssp ECCCSSC
T ss_pred eCCCCcc
Confidence 9998754
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.8e-10 Score=69.90 Aligned_cols=72 Identities=22% Similarity=0.304 Sum_probs=61.6
Q ss_pred CCcCeEEEcCCCCC------CCH---HHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEE
Q 031682 53 SSNTTIFVGGLDPN------VTD---EDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVM 123 (155)
Q Consensus 53 ~~~~~l~v~~l~~~------~~~---~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v 123 (155)
++..+|+|.-++.. .++ .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|+. |+|..++|+.|+|
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 56788989877642 332 4688999999999999999885 9999999999999998 9999999999999
Q ss_pred EEee
Q 031682 124 GMLF 127 (155)
Q Consensus 124 ~~~~ 127 (155)
.+-.
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8754
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.98 E-value=9.8e-10 Score=78.24 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=55.8
Q ss_pred CCHHHHHHHhcccCCeeEEEEeC----------CCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 67 VTDEDLRQPFSQYGEIASVKIPV----------GKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 67 ~~~~~l~~~f~~~g~i~~~~~~~----------~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
-.+++|.+.|++||.|.++.++. .+|++||+|.+.++|.+|+..|+|+.++||.|.+.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34578999999999999999872 369999999999999999999999999999999999753
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.3e-08 Score=63.84 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=67.2
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhccc-----CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEE
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGM 125 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 125 (155)
..++|-+-+||..+++..|+.+++++ |.+.++.+..+.+-|+|+|.+...|-+|.-.|+|..|+|++|+|.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 46778888999999999999999999 9999999999999999999999999999989999999999999953
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=3.7e-06 Score=52.43 Aligned_cols=77 Identities=12% Similarity=0.027 Sum_probs=65.7
Q ss_pred CcCeEEEcCCCCCC-CH----HHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEeec
Q 031682 54 SNTTIFVGGLDPNV-TD----EDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLFR 128 (155)
Q Consensus 54 ~~~~l~v~~l~~~~-~~----~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~~ 128 (155)
-..+|+|.||+.++ .. ..++.+|..|+++......+.-.-..|.|.+.++|.+|-..|++..+.|++++|.|+++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35689999998864 22 47789999999888888877755679999999999999999999999999999999995
Q ss_pred CC
Q 031682 129 HQ 130 (155)
Q Consensus 129 ~~ 130 (155)
..
T Consensus 84 ~~ 85 (104)
T 1wey_A 84 LH 85 (104)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00034 Score=43.43 Aligned_cols=73 Identities=19% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhccc-----CCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQY-----GEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
....+|.|.|||+.++++.|...|+.- |.|..+.... +-|+|+|.+...+++.+.. ..+.|.+.+|.|.-..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 456899999999999999999999872 4888887765 7899999999999999873 3678889888885544
Q ss_pred c
Q 031682 128 R 128 (155)
Q Consensus 128 ~ 128 (155)
+
T Consensus 83 ~ 83 (104)
T 2dhx_A 83 P 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 212
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.83 E-value=4.1e-06 Score=53.40 Aligned_cols=51 Identities=20% Similarity=0.348 Sum_probs=20.2
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHH
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDED 71 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 71 (155)
++|||..|+||+|+|.++.++..+.... ........+|||+|||+++|++.
T Consensus 63 ~~l~~~~~~g~~i~V~~a~~~~~~~~~~-------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 63 EKMNGMLLNDRKVFVGRFKSRKEREAEL-------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp HHHTTCEETTEECEEEESSCCCC-----------------------------------------------
T ss_pred HHcCCCEECCEEEEEEECCCcccccccc-------------------ccccCCCCceEeCCCCCCccccc
Confidence 5789999999999999998765432111 11123456799999999988763
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.67 E-value=0.0007 Score=41.55 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=44.9
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhh
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGV 111 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l 111 (155)
...+.+++ ++|......+|.++|+.||.|. |..+.+ -.|||.|.+.+.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-TEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-CeEEEEecCHHHHHHHHHhc
Confidence 34566677 9999999999999999999543 333333 47999999999999999865
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00026 Score=45.18 Aligned_cols=73 Identities=16% Similarity=0.195 Sum_probs=59.6
Q ss_pred CCCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCC-eEEEEEEe
Q 031682 52 DSSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGK-FMMVMGML 126 (155)
Q Consensus 52 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~~ 126 (155)
....+.|.|-++|+... ..+-..|++||.|.+........+-.|.|.+..+|++|+.. ||..++| -.|-|...
T Consensus 21 ~~~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQASA-SYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp CGGGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCCCEEEEECCCHHHH-HHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 34577888889998864 55667899999999998866689999999999999999984 9999985 55666554
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.59 E-value=0.00035 Score=42.62 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=52.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHhhCCccc
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANSLGQIMAINGVGHTME 116 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--------~g~~fV~f~~~~~a~~a~~~l~g~~~ 116 (155)
++|.|++||+.++++++.+.++....+.......+ -.-|||.|.+.++.....+.++|..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 57899999999999999999999887766666543 36899999999999999999999875
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.15 E-value=0.00043 Score=44.88 Aligned_cols=73 Identities=12% Similarity=0.175 Sum_probs=54.5
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEE-EEe-------------------CCCCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASV-KIP-------------------VGKGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~-------------------~~~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
...|.|-+.|+...... -+.|++||.|.+- ... .+..+..|.|.+..+|.+|+. .+|.
T Consensus 7 e~~VtVFGFp~~~~~~V-I~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQV-IAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHHH-HHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHHH-HHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 44566778887766554 5679999988772 111 125788999999999999998 5999
Q ss_pred ccCCeEEEEEEeecC
Q 031682 115 MEGKFMMVMGMLFRH 129 (155)
Q Consensus 115 ~~~g~~l~v~~~~~~ 129 (155)
.++|..|-|....+.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999998888777543
No 217
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.08 E-value=0.00096 Score=41.07 Aligned_cols=55 Identities=20% Similarity=0.280 Sum_probs=44.7
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhC
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVG 112 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~ 112 (155)
.+.++| ++|......+|.++|+.||. ..|..+.+ ..|||.|.+.+.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD-TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET-TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC-CeEEEEecCHHHHHHHHHhcc
Confidence 345666 89999999999999999994 44554444 579999999999999998764
No 218
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.95 E-value=0.00015 Score=44.67 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=31.1
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLD 64 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~ 64 (155)
+.|||..++|++|+|.++.++........ .+.......+||||||+
T Consensus 55 ~~l~g~~~~g~~l~V~~a~~~~~~~~~~~-----------------~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 55 RGLDGKVICGSRVRVELSTGMPRRSRFDR-----------------PPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HHHHHSCSSSCCCEEEESSSCCCSSCCCS-----------------CCCSCCCCSCCCSCCCC
T ss_pred HHHCCCeECCcEEEEEEccCCCCcccCCC-----------------CCccccCCCceecCCCC
Confidence 46899999999999999998754321110 01112346789999986
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.71 E-value=0.003 Score=38.77 Aligned_cols=64 Identities=11% Similarity=0.174 Sum_probs=50.3
Q ss_pred CCcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCC--------CCEEEEEeCCHHHHHHHHHhhCCccc
Q 031682 53 SSNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVG--------KGCGFVQFANSLGQIMAINGVGHTME 116 (155)
Q Consensus 53 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--------~g~~fV~f~~~~~a~~a~~~l~g~~~ 116 (155)
..+-+|.|+.||+.++++++.+.++..-++.......+ -.-|||.|.+.++.....+.++|..+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 34668999999999999999888877655433333322 36789999999999999999999875
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.48 E-value=0.0018 Score=50.69 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=42.8
Q ss_pred cCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCC-CEEEEEeCCHHHHHHHHHh
Q 031682 55 NTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGK-GCGFVQFANSLGQIMAING 110 (155)
Q Consensus 55 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-g~~fV~f~~~~~a~~a~~~ 110 (155)
.++|+|. .|..+++.+|.+.|++||+|.++.+..++ .|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4789997 79999999999999999999999888775 5999999999998877653
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.56 E-value=0.0034 Score=41.38 Aligned_cols=38 Identities=5% Similarity=-0.108 Sum_probs=35.1
Q ss_pred CCEEEEEeCCHHHHHHHHHhh-CCcccCCeEEEEEEeecC
Q 031682 91 KGCGFVQFANSLGQIMAINGV-GHTMEGKFMMVMGMLFRH 129 (155)
Q Consensus 91 ~g~~fV~f~~~~~a~~a~~~l-~g~~~~g~~l~v~~~~~~ 129 (155)
+|+++|+|.+.++|++|++.+ +|..++| ++.+.++.+.
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 799999999999999999999 9999999 9999988753
No 222
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=95.44 E-value=0.00052 Score=43.20 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=35.8
Q ss_pred CccCCeeeCCeeEEEeccCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCcCeEEEcCCCCCCCHHHHHHHhcccC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSSGYQQQYSSQGGYASNGAPGQGPQSEGDSSNTTIFVGGLDPNVTDEDLRQPFSQYG 80 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 80 (155)
+.|||..++|++|+|.++.++... .+++...++++|+++|++||
T Consensus 65 ~~l~g~~~~g~~l~v~~a~~~~~~-----------------------------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 65 DHLSGFNVSNRYLVVLYYNANRAF-----------------------------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp HHHTTCBSSSCBCEEEECCHHHHT-----------------------------------TTSCHHHHHHHHHHHHHHHC
T ss_pred HHcCCCEECCeEEEEEEecCChhh-----------------------------------hhhhHhHhHHHHHHHHHHhC
Confidence 468999999999999999865322 34566778899999999998
No 223
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=94.96 E-value=0.028 Score=34.34 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.0
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|.|++|+|.++.++...
T Consensus 63 ~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 63 EEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp HHHTTEEETTEEEEEEECCCCCCC
T ss_pred HHHCCCccCCCEEEEEEcCCCccc
Confidence 468999999999999999987654
No 224
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.58 E-value=0.0064 Score=37.24 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=21.7
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
++.|||..|.||+|+|.+|..+...
T Consensus 63 ~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 63 QKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp HHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred HHHhcCCccCCceEEEEecCCCcce
Confidence 3579999999999999999987654
No 225
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.39 E-value=0.026 Score=33.85 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.1
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|+|++|+|.++.++...
T Consensus 66 ~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 66 EAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp HTTTTCEETTEECEEEESCCCCCC
T ss_pred HHcCCCEECCEEEEEEEecccCCC
Confidence 469999999999999999987654
No 226
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=94.38 E-value=0.044 Score=34.08 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.1
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|+|++|+|.|+.++...
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 75 QQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp HHTTTCEETTEECEEEESSCCCCC
T ss_pred HHhCCCEECCEEEEEEEccCCCCC
Confidence 468999999999999999988655
No 227
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.11 E-value=0.037 Score=36.44 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=21.7
Q ss_pred CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 91 KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 91 ~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
+||+||+|.+.++|++|+..+++.
T Consensus 13 ~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 13 KGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHhHHHHHHhhccc
Confidence 799999999999999999887754
No 228
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.75 E-value=0.03 Score=33.42 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=20.8
Q ss_pred CccCC-eeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNG-VYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG-~~l~gr~l~v~~a~~~~~~ 25 (155)
+.||| ..|+|++|+|.++.++...
T Consensus 62 ~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 62 ETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp HHHTTTCEETTEECEEEECCCCCCC
T ss_pred HHccCCeeECCEEEEEEEccCcccc
Confidence 46899 9999999999999987554
No 229
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.56 E-value=0.042 Score=32.72 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.8
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|.|++|+|.++.++...
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCCSC
T ss_pred HHhCCCeeCCcEEEEEEccCCCCC
Confidence 468999999999999999987544
No 230
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.43 E-value=0.035 Score=32.91 Aligned_cols=24 Identities=13% Similarity=0.293 Sum_probs=20.6
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..++|++|+|.++.++...
T Consensus 61 ~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 61 AQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp HHHTTCEETTEECEEEESCCCCCC
T ss_pred HHhCCCEECCcEEEEEECCCCCCC
Confidence 468999999999999999987543
No 231
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=93.15 E-value=0.073 Score=33.33 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.7
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|+|++|+|.++.++...
T Consensus 66 ~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 66 KDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HHCSSCBCSSSBCEEEECCCSSCS
T ss_pred HHhCCCEECCEEEEEEECCCCCCC
Confidence 468999999999999999977544
No 232
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.01 E-value=0.035 Score=32.95 Aligned_cols=24 Identities=4% Similarity=0.109 Sum_probs=20.9
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|+|++|+|.++.++...
T Consensus 60 ~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 60 RNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp HHHTTCBCSSCBCEEECSSCCCCC
T ss_pred HHhcCCccCCcEEEEEECCCCCCC
Confidence 468999999999999999987654
No 233
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.90 E-value=0.056 Score=32.57 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.1
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|.|++|+|.++.++...
T Consensus 68 ~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 68 AEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp HHTTTEESSSCEEEEEECCCCSTT
T ss_pred HHhCCCEECCcEEEEEEcCCCccc
Confidence 478999999999999999987654
No 234
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.54 E-value=0.037 Score=33.05 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=20.9
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|.|++|+|.++.++...
T Consensus 65 ~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 65 EQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp HHHTTCCSSSSCCEEEESSCCCCC
T ss_pred HHhCCCeeCCcEEEEEEcccccCC
Confidence 468999999999999999987654
No 235
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.47 E-value=0.1 Score=32.12 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.9
Q ss_pred CccCCeeeCC-----eeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSS-----RPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~g-----r~l~v~~a~~~~~~ 25 (155)
+.|||..|.| ++|+|.++.++...
T Consensus 68 ~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 68 RKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp HHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred HHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 5699999999 99999999987544
No 236
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.57 E-value=1 Score=35.67 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=44.9
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCC
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGH 113 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g 113 (155)
....++|+ +|..+...+|.++|+.||.+ .|..+ +...+||.|.+.+.|..++..+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wi-ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEEC-SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEE-cCCeEEEEECCHHHHHHHHHHHHh
Confidence 34566776 88888999999999999954 33333 346799999999999999988753
No 237
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=91.34 E-value=0.056 Score=32.42 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.7
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..++|++|+|.++.++...
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 62 RNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp HHHTTCEETTEECEEEECSCSSGG
T ss_pred HHhCCCeECCeEEEEEEcCCCCCC
Confidence 468999999999999999987543
No 238
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=91.30 E-value=0.07 Score=31.50 Aligned_cols=22 Identities=0% Similarity=-0.016 Sum_probs=19.1
Q ss_pred CccCCeeeCCeeEEEeccCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRK 23 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~ 23 (155)
+.|||..++|++|+|.++..+.
T Consensus 58 ~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 58 QMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp HHHTTEEETTEEEEEEECCCCC
T ss_pred HHhCCCeECCcEEEEEEcCCCc
Confidence 4689999999999999987654
No 239
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.29 E-value=0.058 Score=32.81 Aligned_cols=24 Identities=38% Similarity=0.642 Sum_probs=20.6
Q ss_pred CccCCee-eCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVY-CSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~-l~gr~l~v~~a~~~~~~ 25 (155)
+.|||.. |+|++|+|.++.++...
T Consensus 69 ~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 69 TECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp HHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred HHccCCcccCCEeEEEEEccCCCcC
Confidence 4689999 99999999999887544
No 240
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=91.26 E-value=0.062 Score=32.39 Aligned_cols=19 Identities=5% Similarity=0.113 Sum_probs=17.3
Q ss_pred CccCCeeeCCeeEEEeccC
Q 031682 2 TEMNGVYCSSRPMRIGAAT 20 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~ 20 (155)
+.|||..|+||+|+|++|.
T Consensus 61 ~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 61 MALNNCVLANTTIFAESPS 79 (89)
T ss_dssp HHHTTEEETTEEEEEECCC
T ss_pred HHhcCCEECCcEEEEEECC
Confidence 5799999999999999984
No 241
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.99 E-value=0.22 Score=30.68 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=20.1
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|+|++|+|.++......
T Consensus 74 ~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 74 SMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp HHHTTCEETTEECEEEECSCCCCC
T ss_pred HHhCCCEeCCCEEEEEEcccCCCC
Confidence 468999999999999999865443
No 242
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.91 E-value=0.13 Score=30.63 Aligned_cols=22 Identities=5% Similarity=0.067 Sum_probs=18.9
Q ss_pred cCCeeeCCeeEEEeccCCCCCC
Q 031682 4 MNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 4 mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
|||..|+|++|+|.++.++...
T Consensus 64 l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 64 QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp CSCCEETTEECCCBCSCCSCCC
T ss_pred cCCeEECCEEEEEEECCcCCCC
Confidence 8999999999999998766443
No 243
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.56 E-value=0.42 Score=29.52 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=19.3
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
|+.||+ .|.|++|+|.++.+....
T Consensus 76 i~~~~~-~~~g~~l~V~~a~~~~~~ 99 (116)
T 2cqd_A 76 CKDPNP-IIDGRKANVNLAYLGAKP 99 (116)
T ss_dssp HTCSSC-EETTEECEEEESTTTCCC
T ss_pred HHhCCC-cCCCEEEEEEEcccCCCc
Confidence 357888 899999999999876433
No 244
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=89.98 E-value=0.049 Score=33.99 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
|+.|||..|.|++|+|.++.++...
T Consensus 74 i~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 74 IDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 4579999999999999999987554
No 245
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.51 E-value=0.21 Score=30.44 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=20.0
Q ss_pred CccC--CeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMN--GVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mn--G~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|| +..++|++|+|.|+.++...
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred HHhhCCCceecCCeEEEEEcCCCCCc
Confidence 5685 59999999999999987654
No 246
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=90.49 E-value=0.041 Score=34.80 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.8
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|+|++|+|.|+.++...
T Consensus 82 ~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 82 EGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp HHHTTCBSSSSBCEEEESEESSSC
T ss_pred HHhCCCeeCCeEEEEEEecCCCCC
Confidence 468999999999999999877554
No 247
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=90.02 E-value=0.083 Score=32.85 Aligned_cols=22 Identities=0% Similarity=-0.080 Sum_probs=19.3
Q ss_pred CccCCeeeCCeeEEEeccCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRK 23 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~ 23 (155)
++|||..|+||+|+|.++....
T Consensus 66 ~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 66 KNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp HHHTTCEETTEECEEEECSTTH
T ss_pred HHhCCCEECCeEEEEEECCCCc
Confidence 5799999999999999997654
No 248
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=89.94 E-value=0.03 Score=33.76 Aligned_cols=24 Identities=0% Similarity=-0.050 Sum_probs=20.0
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..+.|++|+|.++.++...
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCCC-
T ss_pred HHcCCCeeCCcEEEEEEcCcCCCC
Confidence 468999999999999999876544
No 249
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=89.24 E-value=0.048 Score=32.22 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=16.9
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
..|||..++|++|+|.+|.+....
T Consensus 60 ~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 60 AKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp HTSCSSCCSSSSCSEEEC------
T ss_pred HHhCCCEECCeEEEEEEcCCCCCC
Confidence 579999999999999999987544
No 250
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.07 E-value=0.095 Score=31.77 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.7
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..++|++|+|.++.++...
T Consensus 68 ~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 68 RNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp HHSSSBSCSSSCBEEEETTCTTHH
T ss_pred HHhCCCeeCCcEEEEEeCCCccch
Confidence 468999999999999999987544
No 251
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=89.03 E-value=0.085 Score=33.20 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=19.0
Q ss_pred CCccCCeeeCCeeEEEeccCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPR 22 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~ 22 (155)
++.|||..++||+|+|.++...
T Consensus 72 i~~lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 72 VNALHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp HHHHTTCEETTEECEEEEECHH
T ss_pred HHHhCCCEECCEEEEEEEEcHH
Confidence 3579999999999999998654
No 252
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=87.65 E-value=0.21 Score=32.76 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.7
Q ss_pred CccCCeeeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
+.|||..|+|++|+|.|+.+....
T Consensus 99 ~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 99 RYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp HHTTTSEETTEECEEEEESCCCTT
T ss_pred HHhCCCEECCeEEEEEECCCCCCc
Confidence 468999999999999999986544
No 253
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=87.38 E-value=0.17 Score=32.63 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=20.1
Q ss_pred CCccCCeeeCC--eeEEEeccCCCC
Q 031682 1 MTEMNGVYCSS--RPMRIGAATPRK 23 (155)
Q Consensus 1 i~~mnG~~l~g--r~l~v~~a~~~~ 23 (155)
|+.|||..|.| ++|+|.|+++..
T Consensus 83 i~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 83 KLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HHHHTTCEEETTEEEEEEEECSCSS
T ss_pred HHHcCCCeecCCCcEEEEEecCCCc
Confidence 35799999998 999999999874
No 254
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.61 E-value=0.094 Score=32.55 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=19.4
Q ss_pred CccCCeeeCCeeEEEeccCCCC
Q 031682 2 TEMNGVYCSSRPMRIGAATPRK 23 (155)
Q Consensus 2 ~~mnG~~l~gr~l~v~~a~~~~ 23 (155)
+.|||..|+|++|+|.|+....
T Consensus 64 ~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 64 RHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp HHHTTCBSSSSBCEEEEEETTT
T ss_pred HHhCCCEECCeEEEEEECCCCc
Confidence 5699999999999999998754
No 255
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.52 E-value=0.21 Score=31.93 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.0
Q ss_pred CCccCCeeeCC--eeEEEeccCCCCC
Q 031682 1 MTEMNGVYCSS--RPMRIGAATPRKS 24 (155)
Q Consensus 1 i~~mnG~~l~g--r~l~v~~a~~~~~ 24 (155)
|+.|||..|.| ++|+|.+|+++.-
T Consensus 79 ~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 79 KAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp HHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred HHHhCCCEecCCCeEEEEEEecCCcc
Confidence 35799999988 6999999998753
No 256
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=85.52 E-value=0.2 Score=31.94 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.4
Q ss_pred CccCCe----eeCCeeEEEeccCCCCCC
Q 031682 2 TEMNGV----YCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 2 ~~mnG~----~l~gr~l~v~~a~~~~~~ 25 (155)
..|||. .|+||+|+|.++.++...
T Consensus 84 ~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 84 QILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp HHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred HHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 568999 999999999999886543
No 257
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=83.68 E-value=0.27 Score=33.03 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.1
Q ss_pred CccCCeeeCC--eeEEEeccCCCC
Q 031682 2 TEMNGVYCSS--RPMRIGAATPRK 23 (155)
Q Consensus 2 ~~mnG~~l~g--r~l~v~~a~~~~ 23 (155)
+.|||..|.| ++|+|+|++++.
T Consensus 102 ~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 102 LSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp HHSTTBCSSSSCSCEEEEECSSSS
T ss_pred HHhCCCEecCCCcEEEEEEecCCc
Confidence 5799999965 999999999874
No 258
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=82.06 E-value=1.4 Score=34.20 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCccCCeeeCCeeEEEeccCCCCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~~~~ 25 (155)
|..|||..|+|++|.|.++.+....
T Consensus 161 i~~lng~~i~gr~i~V~~a~~~~~~ 185 (437)
T 3pgw_S 161 YKHADGKKIDGRRVLVDVERGRTVK 185 (437)
T ss_pred HHHcCCCEECCEEEEEEEeCCCCCC
Confidence 3579999999999999999987544
No 259
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.88 E-value=0.4 Score=29.39 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=17.4
Q ss_pred ccCC--eeeCCeeEEEeccCCCCCC
Q 031682 3 EMNG--VYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 3 ~mnG--~~l~gr~l~v~~a~~~~~~ 25 (155)
.|+| ..|.|++|+|.|+..+...
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred HhccCCceECCEEEEEEEccCcccc
Confidence 3544 4599999999999876543
No 260
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.33 E-value=0.39 Score=29.69 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=17.8
Q ss_pred cCCeeeCCeeEEEeccCCCC
Q 031682 4 MNGVYCSSRPMRIGAATPRK 23 (155)
Q Consensus 4 mnG~~l~gr~l~v~~a~~~~ 23 (155)
+||..|+||+|+|.++.++.
T Consensus 76 ~~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 76 LHRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp GCSEEETTEEEEEEEECHHH
T ss_pred hCCCccCCeEEEEEECCHHH
Confidence 49999999999999998764
No 261
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=77.06 E-value=0.73 Score=32.41 Aligned_cols=22 Identities=5% Similarity=-0.053 Sum_probs=19.1
Q ss_pred CCccCCeeeCCeeEEEeccCCC
Q 031682 1 MTEMNGVYCSSRPMRIGAATPR 22 (155)
Q Consensus 1 i~~mnG~~l~gr~l~v~~a~~~ 22 (155)
|++|||..|.|++|+|.++.+.
T Consensus 129 i~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 129 MDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp HTTSTTSCBTTBCCEEEECCHH
T ss_pred HHHcCCCeECCEEeEEEECCCC
Confidence 4679999999999999998754
No 262
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=76.73 E-value=1.3 Score=27.49 Aligned_cols=19 Identities=5% Similarity=-0.050 Sum_probs=17.3
Q ss_pred cCCeeeCCeeEEEeccCCC
Q 031682 4 MNGVYCSSRPMRIGAATPR 22 (155)
Q Consensus 4 mnG~~l~gr~l~v~~a~~~ 22 (155)
|||..|+||.|+|.++..+
T Consensus 80 ~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 80 KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp GTTEEETTEEEEEEEECHH
T ss_pred cCCCeECCeEEEEEECCHH
Confidence 8999999999999998754
No 263
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=75.68 E-value=0.71 Score=28.58 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=16.5
Q ss_pred CCccCCeeeCCee-----EEEeccCCCCC
Q 031682 1 MTEMNGVYCSSRP-----MRIGAATPRKS 24 (155)
Q Consensus 1 i~~mnG~~l~gr~-----l~v~~a~~~~~ 24 (155)
|++|||..|+|++ |+|..+.++..
T Consensus 68 i~~l~g~~~~gr~~~~~~i~v~~~~~~~~ 96 (115)
T 3beg_B 68 VRKLDNTKFRSHEGETAYIRVKVDGPRSP 96 (115)
T ss_dssp HHHHTTCBCCCTTSCCCBCEEEECC----
T ss_pred HHHhCCCEECCcEeeeEEEEeccCCCCCC
Confidence 3569999999999 77777776543
No 264
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.28 E-value=1.7 Score=26.69 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.5
Q ss_pred CCeeeCCeeEEEeccCCCCCC
Q 031682 5 NGVYCSSRPMRIGAATPRKSS 25 (155)
Q Consensus 5 nG~~l~gr~l~v~~a~~~~~~ 25 (155)
+|..|.||+|+|.|+.++...
T Consensus 75 ~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 75 VTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp SCCEETTEECCBCCCSSSSCC
T ss_pred CCceECCEEEEEEEcCCCCCC
Confidence 358999999999999887544
No 265
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.62 E-value=1.8 Score=26.97 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=17.5
Q ss_pred ccCCeeeCCeeEEEeccCCC
Q 031682 3 EMNGVYCSSRPMRIGAATPR 22 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~~ 22 (155)
+|||..|+||+|+|.++.++
T Consensus 85 ~~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 85 CRHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp TSCSBCSTTSCBEEEEECHH
T ss_pred HhCCCeECCcEEEEEECCHH
Confidence 47999999999999998754
No 266
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.76 E-value=15 Score=20.50 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=40.5
Q ss_pred eEEEc-CCCCCCCHHHHHHHhcccC-----CeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeEEEEEEee
Q 031682 57 TIFVG-GLDPNVTDEDLRQPFSQYG-----EIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFMMVMGMLF 127 (155)
Q Consensus 57 ~l~v~-~l~~~~~~~~l~~~f~~~g-----~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~~~ 127 (155)
++||. +=...+...+|..++..-+ .|-.+.+.. .+.||+-.. ..+..++..|++..+.|+++++..++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45553 2233466677777776543 444555543 488888864 45778888899999999998887653
No 267
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=62.96 E-value=5.5 Score=25.75 Aligned_cols=19 Identities=11% Similarity=0.125 Sum_probs=16.8
Q ss_pred ccCCeeeCCeeEEEeccCC
Q 031682 3 EMNGVYCSSRPMRIGAATP 21 (155)
Q Consensus 3 ~mnG~~l~gr~l~v~~a~~ 21 (155)
+|||..|+||+|+|.+...
T Consensus 77 ~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp TTTCEEETTEEEEEEECCT
T ss_pred hhcCCeecCcEEEEEECcc
Confidence 6899999999999998654
No 268
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=51.27 E-value=27 Score=18.80 Aligned_cols=56 Identities=9% Similarity=0.078 Sum_probs=43.3
Q ss_pred CcCeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHh
Q 031682 54 SNTTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAING 110 (155)
Q Consensus 54 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~ 110 (155)
...++.|.++.=.--...++..+.. ..+..+.+....+-+.|.|.+.+....+++.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 3457888888777778889999999 8888888877777888888755555666654
No 269
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=42.17 E-value=44 Score=20.36 Aligned_cols=34 Identities=35% Similarity=0.400 Sum_probs=26.6
Q ss_pred CeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 81 EIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 81 ~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
.|.++-.+.+ +||-||+=.+..+...|+..+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 4666655554 999999999999999998766543
No 270
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=35.20 E-value=50 Score=17.17 Aligned_cols=54 Identities=9% Similarity=0.157 Sum_probs=38.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCC---HHHHHHHHH
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFAN---SLGQIMAIN 109 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~---~~~a~~a~~ 109 (155)
.++.|.++.-.--...++..+.....+..+.+....+-+.|.|.. .++...+++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHH
Confidence 356777776665667888888888888888888777888888843 344445554
No 271
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.75 E-value=76 Score=18.55 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=26.3
Q ss_pred CeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 81 EIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 81 ~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
.+..+.++.. .||.||++...++...++....|.
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 4666666543 899999999998888888877664
No 272
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.27 E-value=10 Score=24.67 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=16.1
Q ss_pred HHHHHhcccCCeeEEEEeCCCCEEEEEeC
Q 031682 71 DLRQPFSQYGEIASVKIPVGKGCGFVQFA 99 (155)
Q Consensus 71 ~l~~~f~~~g~i~~~~~~~~~g~~fV~f~ 99 (155)
++.++|...|.|... ...+||+||.-.
T Consensus 3 ~~~~l~~~~G~Vkwf--n~~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWF--NVRMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEE--ETTTTEEEEEEE
T ss_pred cccccccceeEEEEE--ECCCCeeEEeeC
Confidence 445566666765553 345889999865
No 273
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=28.40 E-value=1.3e+02 Score=20.03 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=33.4
Q ss_pred eEEEcCCCC---------CCCHHHHHHHh--cccCCeeEEEEeCC---CCEEEEEeCC-HHHHHHHH
Q 031682 57 TIFVGGLDP---------NVTDEDLRQPF--SQYGEIASVKIPVG---KGCGFVQFAN-SLGQIMAI 108 (155)
Q Consensus 57 ~l~v~~l~~---------~~~~~~l~~~f--~~~g~i~~~~~~~~---~g~~fV~f~~-~~~a~~a~ 108 (155)
++.|-|+|. ......|.+.| ..|.++....+.-. .|++.|.|.+ ......|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 455667665 14457888866 88987665555433 6889999984 44444444
No 274
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=24.90 E-value=92 Score=21.36 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=26.3
Q ss_pred CeeEEEEeCC-CCEEEEEeCCHHHHHHHHHhhCCc
Q 031682 81 EIASVKIPVG-KGCGFVQFANSLGQIMAINGVGHT 114 (155)
Q Consensus 81 ~i~~~~~~~~-~g~~fV~f~~~~~a~~a~~~l~g~ 114 (155)
.|.++-...+ +||-||+=.+..+...|++.+.+.
T Consensus 138 ~I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 138 KILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred cEEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 3556544443 899999999999999998877663
No 275
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=21.64 E-value=1e+02 Score=16.19 Aligned_cols=55 Identities=9% Similarity=0.079 Sum_probs=40.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhcccCCeeEEEEeCCCCEEEEEeC----CHHHHHHHHHh
Q 031682 56 TTIFVGGLDPNVTDEDLRQPFSQYGEIASVKIPVGKGCGFVQFA----NSLGQIMAING 110 (155)
Q Consensus 56 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~----~~~~a~~a~~~ 110 (155)
.++.|.++.-.--...++..+.....|..+.+....+-+.|.|. +.++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35677777665556788888988888888888777788889885 45566666654
No 276
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=20.50 E-value=1.8e+02 Score=21.89 Aligned_cols=58 Identities=16% Similarity=0.008 Sum_probs=38.7
Q ss_pred EEcCCCCCC----CHHHHHHHhcccCCeeEEEEeCCCCEEEEEeCCHHHHHHHHHhhCCcccCCeE
Q 031682 59 FVGGLDPNV----TDEDLRQPFSQYGEIASVKIPVGKGCGFVQFANSLGQIMAINGVGHTMEGKFM 120 (155)
Q Consensus 59 ~v~~l~~~~----~~~~l~~~f~~~g~i~~~~~~~~~g~~fV~f~~~~~a~~a~~~l~g~~~~g~~ 120 (155)
+|||+..-. ....+.++..+||.|..+.+. +.-+|...+.+.++..+.. ++..+.+++
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g---~~~~vvv~~p~~~k~il~~-~~~~f~~rp 79 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG---TKTTVIVGHHQLAKEVLIK-KGKDFSGRP 79 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET---TEEEEEECSHHHHHHHHTT-TTTTTBBCC
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC---CCCEEEECCHHHHHHHHHh-CcHhhCCCC
Confidence 577776432 135677777899999888773 4567777888888888753 444454443
Done!