BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031686
(155 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
DFI N++P +I ++ +T P I +K LL+L +V D + K S F+ A +FKGK+
Sbjct: 98 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 157
Query: 89 LFVYSQIYPKLKGQIFDYFGV---TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
LF++ +I ++FG+ C R+I + + K + ELT + F
Sbjct: 158 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPE-SEELTAERITEFCHR 216
Query: 146 FLGDKLR 152
FL K++
Sbjct: 217 FLEGKIK 223
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 33 DFISLNKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKL 88
DFI N++P +I ++ +T P I +K LL+L +V D + K S F+ A +FKGK+
Sbjct: 109 DFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKI 168
Query: 89 LFVYSQIYPKLKGQIFDYFGV---TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145
LF++ +I ++FG+ C R+I + + K + ELT + F
Sbjct: 169 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYK-PESEELTAERITEFCHR 227
Query: 146 FLGDKLR 152
FL K++
Sbjct: 228 FLEGKIK 234
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 38 NKIPPMITYSRETTPLILNSPLK---LLWLFAAVHDSEAK-SIFQETARAFKGKLLFVYS 93
N++P +I ++ +T P I +K LL+L +V D + K S F+ A +FKGK+LF +
Sbjct: 11 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 94 QIYPKLKGQIFDYFGV---TCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK 150
+I ++FG+ C R+I + + K + ELT + F FL K
Sbjct: 71 DSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPE-SEELTAERITEFCHRFLEGK 129
Query: 151 LR 152
++
Sbjct: 130 IK 131
>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27
pdb|4F9Z|A Chain A, Crystal Structure Of Human Erp27
pdb|4F9Z|B Chain B, Crystal Structure Of Human Erp27
pdb|4F9Z|C Chain C, Crystal Structure Of Human Erp27
pdb|4F9Z|E Chain E, Crystal Structure Of Human Erp27
Length = 227
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 34 FISLNKIPPMITYSRETTPLILNSPLKLLWLF----AAVHDSEAKSIFQETARAFKGKLL 89
FI +N + + Y+ T + NS +++ L A+ E +Q+ A+ F+GK+L
Sbjct: 106 FIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGKIL 165
Query: 90 FVYSQIYPKLKGQIFDYFGVTCYTSRVIAV-ASIRKRKKYVLNGELTLSNVKSFALDFLG 148
F+ K G++ +F + +A+ ++ + E+++ +V++F FL
Sbjct: 166 FILVDSGMKENGKVISFFKLKESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLS 225
Query: 149 DK 150
K
Sbjct: 226 GK 227
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)
Query: 42 PMITYSRETTPLILNSPLKLLWLFAA--VHDSEAKSIFQETARAFKGKLLFVYSQIYP 97
P+IT++ + T L+SPLK++ + V+D+E K + AF +LLF Q P
Sbjct: 26 PIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLE----AFLQRLLFPEIQEMP 79
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 34 FISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYS 93
F+ L + P + +PL PLK L+ + + S KSI +++ R F G + VY
Sbjct: 245 FVELKRGEPPRYERIDASPL----PLKTLY-YKKIDTSALKSI-RDSCRNFPGYVRVVYE 298
Query: 94 Q---IYPKLKGQIFDYFGVTCYTSRVIA 118
+ I P L G+I + + + R I
Sbjct: 299 EDSGILPDLMGEIDNLVKIERKSRREIE 326
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 63 WLFAAVHDSEAKSIFQETARAFKGKLL 89
W+F A+ + ++ QE AR+F GKL+
Sbjct: 338 WVFGAIDPTSGVAVLQEIARSF-GKLM 363
>pdb|3NWG|A Chain A, The Crystal Structure Of A Microcomparments Protein From
Desulfitobacterium Hafniense Dcb
Length = 182
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 29 SVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFA 66
SV+DDFI N P ++T TPL L L ++ F+
Sbjct: 67 SVLDDFILPNVHPQVLTAISAATPLTLIKALGIIETFS 104
>pdb|3THN|A Chain A, Crystal Structure Of Mre11 Core With Manganese
Length = 319
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 34 FISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYS 93
F+ L + P + +PL PLK L+ + + S KSI +++ R F G + VY
Sbjct: 245 FVELKRGEPPRYERIDASPL----PLKTLY-YKKIDTSALKSI-RDSCRNFPGYVRVVYE 298
Query: 94 Q---IYPKLKGQI 103
+ I P L G+I
Sbjct: 299 EDSGILPDLMGEI 311
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,979,052
Number of Sequences: 62578
Number of extensions: 140239
Number of successful extensions: 372
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 11
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)