Query 031686
Match_columns 155
No_of_seqs 113 out of 789
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 03:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03072 PDI_b'_ERp44 PDIb' fam 99.9 4E-22 8.7E-27 136.8 9.9 106 43-150 1-111 (111)
2 PF13848 Thioredoxin_6: Thiore 99.9 5.6E-21 1.2E-25 140.2 14.2 125 19-145 54-184 (184)
3 KOG0190 Protein disulfide isom 99.8 2.5E-19 5.5E-24 148.4 12.0 146 8-155 202-354 (493)
4 cd03073 PDI_b'_ERp72_ERp57 PDI 99.8 1.1E-18 2.5E-23 119.6 8.9 102 43-147 1-111 (111)
5 cd02983 P5_C P5 family, C-term 99.7 7.6E-17 1.6E-21 113.5 11.8 109 41-153 2-121 (130)
6 TIGR01130 ER_PDI_fam protein d 99.7 2.4E-16 5.1E-21 130.3 14.0 131 21-154 195-334 (462)
7 PTZ00102 disulphide isomerase; 99.7 4E-16 8.7E-21 130.0 12.9 125 24-154 215-345 (477)
8 KOG0912 Thiol-disulfide isomer 99.6 8E-15 1.7E-19 114.4 10.0 129 21-153 189-325 (375)
9 cd02982 PDI_b'_family Protein 99.5 6.4E-14 1.4E-18 93.8 9.4 97 49-147 3-103 (103)
10 PF01216 Calsequestrin: Calseq 99.2 5.4E-10 1.2E-14 88.9 14.4 135 16-153 216-374 (383)
11 cd03071 PDI_b'_NRX PDIb' famil 98.8 2.8E-08 6E-13 66.7 7.9 101 44-148 2-116 (116)
12 PF00085 Thioredoxin: Thioredo 98.7 4.3E-07 9.4E-12 59.9 10.9 98 43-145 1-102 (103)
13 cd03001 PDI_a_P5 PDIa family, 98.6 9.2E-07 2E-11 58.6 10.2 97 43-143 2-102 (103)
14 cd03004 PDI_a_ERdj5_C PDIa fam 98.6 8.2E-07 1.8E-11 59.3 9.7 99 41-143 1-104 (104)
15 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 1.8E-06 3.9E-11 57.4 10.8 97 41-142 1-100 (101)
16 cd03074 PDI_b'_Calsequestrin_C 98.6 1.1E-06 2.4E-11 59.1 9.3 104 41-147 1-120 (120)
17 KOG0190 Protein disulfide isom 98.5 1.1E-06 2.3E-11 73.8 10.3 122 19-147 112-235 (493)
18 TIGR01126 pdi_dom protein disu 98.5 2.1E-06 4.6E-11 56.5 9.7 96 46-146 1-101 (102)
19 cd03002 PDI_a_MPD1_like PDI fa 98.4 7E-06 1.5E-10 55.0 10.3 99 43-143 2-108 (109)
20 cd02996 PDI_a_ERp44 PDIa famil 98.4 8.2E-06 1.8E-10 54.9 9.9 97 43-143 3-108 (108)
21 KOG4277 Uncharacterized conser 98.3 3E-06 6.6E-11 67.0 8.2 122 26-152 218-360 (468)
22 PRK10996 thioredoxin 2; Provis 98.3 1.3E-05 2.8E-10 56.8 10.4 98 43-146 37-138 (139)
23 PRK09381 trxA thioredoxin; Pro 98.3 2.2E-05 4.7E-10 52.8 11.0 101 42-147 4-108 (109)
24 cd02998 PDI_a_ERp38 PDIa famil 98.3 2.2E-05 4.8E-10 51.8 10.2 98 43-143 2-105 (105)
25 cd03065 PDI_b_Calsequestrin_N 98.2 2.8E-05 6.1E-10 53.9 10.8 100 42-147 10-119 (120)
26 cd02961 PDI_a_family Protein D 98.2 1.4E-05 3.1E-10 51.8 8.9 95 45-143 2-101 (101)
27 cd03006 PDI_a_EFP1_N PDIa fami 98.2 2.7E-05 5.9E-10 53.4 9.7 99 40-143 8-113 (113)
28 cd02993 PDI_a_APS_reductase PD 98.2 2.9E-05 6.4E-10 52.4 9.6 98 43-143 3-109 (109)
29 cd02950 TxlA TRX-like protein 98.2 7.8E-05 1.7E-09 53.0 11.9 103 49-153 11-116 (142)
30 PF07912 ERp29_N: ERp29, N-ter 98.2 0.00014 3E-09 50.3 12.4 103 43-145 6-117 (126)
31 cd03005 PDI_a_ERp46 PDIa famil 98.1 3.2E-05 7E-10 51.0 8.9 95 43-143 2-102 (102)
32 cd02995 PDI_a_PDI_a'_C PDIa fa 98.1 6.8E-05 1.5E-09 49.4 10.0 96 43-143 2-104 (104)
33 TIGR01068 thioredoxin thioredo 98.1 6.8E-05 1.5E-09 49.0 9.9 95 47-146 2-100 (101)
34 PTZ00102 disulphide isomerase; 98.1 0.00015 3.1E-09 60.7 14.0 120 26-149 325-467 (477)
35 cd02997 PDI_a_PDIR PDIa family 98.1 8.1E-05 1.8E-09 49.1 9.9 98 43-143 2-104 (104)
36 cd03007 PDI_a_ERp29_N PDIa fam 98.0 0.00022 4.7E-09 49.2 11.2 102 43-145 3-114 (116)
37 cd03069 PDI_b_ERp57 PDIb famil 97.9 7.8E-05 1.7E-09 50.2 8.1 88 49-145 9-102 (104)
38 cd02994 PDI_a_TMX PDIa family, 97.9 0.00026 5.6E-09 46.8 10.5 94 43-144 3-100 (101)
39 cd02965 HyaE HyaE family; HyaE 97.9 0.00021 4.5E-09 48.9 9.9 91 43-139 12-108 (111)
40 PRK11509 hydrogenase-1 operon 97.9 0.00068 1.5E-08 47.8 12.4 111 30-150 9-127 (132)
41 cd02956 ybbN ybbN protein fami 97.9 0.00032 6.8E-09 45.9 10.2 81 58-144 12-96 (96)
42 KOG0910 Thioredoxin-like prote 97.9 0.00026 5.6E-09 50.7 10.1 91 52-148 55-149 (150)
43 cd03066 PDI_b_Calsequestrin_mi 97.9 0.00019 4.2E-09 48.0 8.9 95 44-146 3-100 (102)
44 cd02981 PDI_b_family Protein D 97.9 0.00015 3.3E-09 47.5 8.3 87 51-145 10-96 (97)
45 PTZ00443 Thioredoxin domain-co 97.9 0.00029 6.2E-09 54.0 10.6 102 41-148 30-140 (224)
46 cd02989 Phd_like_TxnDC9 Phosdu 97.7 0.0011 2.4E-08 45.2 10.8 97 42-143 5-112 (113)
47 TIGR00424 APS_reduc 5'-adenyly 97.7 0.00076 1.6E-08 56.8 11.5 104 41-146 351-462 (463)
48 cd02949 TRX_NTR TRX domain, no 97.7 0.00083 1.8E-08 44.2 9.5 86 54-144 8-97 (97)
49 cd03067 PDI_b_PDIR_N PDIb fami 97.7 0.00035 7.7E-09 46.7 7.4 104 42-145 2-110 (112)
50 cd02953 DsbDgamma DsbD gamma f 97.7 0.00083 1.8E-08 44.6 9.4 93 50-144 3-104 (104)
51 TIGR01130 ER_PDI_fam protein d 97.6 0.00085 1.9E-08 55.5 10.7 103 42-149 2-111 (462)
52 cd02963 TRX_DnaJ TRX domain, D 97.6 0.00096 2.1E-08 45.2 9.0 83 57-145 23-110 (111)
53 PF01216 Calsequestrin: Calseq 97.5 0.0016 3.4E-08 52.6 10.7 123 18-148 123-248 (383)
54 cd02947 TRX_family TRX family; 97.5 0.002 4.3E-08 40.6 9.6 88 50-143 2-92 (93)
55 cd02999 PDI_a_ERp44_like PDIa 97.5 0.00085 1.8E-08 44.7 7.8 81 57-143 17-100 (100)
56 COG3118 Thioredoxin domain-con 97.5 0.0017 3.6E-08 51.4 10.3 103 40-148 22-131 (304)
57 cd02957 Phd_like Phosducin (Ph 97.5 0.0022 4.7E-08 43.5 9.5 96 41-143 4-112 (113)
58 cd03000 PDI_a_TMX3 PDIa family 97.4 0.0033 7.2E-08 41.8 9.6 91 49-146 7-103 (104)
59 cd03068 PDI_b_ERp72 PDIb famil 97.3 0.0021 4.7E-08 43.5 8.0 94 44-145 3-106 (107)
60 PF13848 Thioredoxin_6: Thiore 97.3 0.0014 3E-08 47.5 7.6 67 74-148 9-76 (184)
61 cd02984 TRX_PICOT TRX domain, 97.3 0.0029 6.3E-08 41.1 8.4 88 49-143 3-96 (97)
62 PLN02309 5'-adenylylsulfate re 97.2 0.0064 1.4E-07 51.2 11.0 103 41-146 345-456 (457)
63 cd02948 TRX_NDPK TRX domain, T 97.1 0.0074 1.6E-07 40.1 9.1 91 47-145 6-101 (102)
64 TIGR02187 GlrX_arch Glutaredox 97.1 0.012 2.6E-07 44.5 11.1 116 21-145 93-214 (215)
65 cd02987 Phd_like_Phd Phosducin 97.1 0.016 3.6E-07 42.6 11.2 101 38-146 59-174 (175)
66 cd02975 PfPDO_like_N Pyrococcu 97.1 0.011 2.3E-07 40.3 9.5 72 72-148 38-111 (113)
67 cd02951 SoxW SoxW family; SoxW 97.0 0.016 3.6E-07 39.6 10.1 95 54-150 9-122 (125)
68 cd02958 UAS UAS family; UAS is 96.7 0.033 7.3E-07 37.6 9.4 68 79-148 44-112 (114)
69 TIGR00411 redox_disulf_1 small 96.7 0.034 7.5E-07 34.8 8.9 76 62-146 3-81 (82)
70 cd02954 DIM1 Dim1 family; Dim1 96.7 0.016 3.4E-07 39.8 7.6 61 58-122 14-77 (114)
71 PTZ00051 thioredoxin; Provisio 96.6 0.015 3.4E-07 37.8 7.4 74 43-121 2-79 (98)
72 cd02985 TRX_CDSP32 TRX family, 96.6 0.038 8.2E-07 36.7 9.0 90 50-145 5-101 (103)
73 cd02962 TMX2 TMX2 family; comp 96.5 0.026 5.5E-07 40.7 8.1 79 42-122 29-117 (152)
74 cd02988 Phd_like_VIAF Phosduci 96.4 0.082 1.8E-06 39.5 10.8 102 36-145 77-190 (192)
75 cd02992 PDI_a_QSOX PDIa family 96.4 0.034 7.5E-07 37.8 7.9 80 42-123 2-88 (114)
76 smart00594 UAS UAS domain. 96.2 0.072 1.6E-06 36.6 8.9 62 80-143 55-121 (122)
77 PHA02278 thioredoxin-like prot 96.2 0.067 1.4E-06 35.9 8.5 90 49-142 5-100 (103)
78 PLN00410 U5 snRNP protein, DIM 96.1 0.12 2.7E-06 36.8 9.9 89 58-149 23-122 (142)
79 KOG2603 Oligosaccharyltransfer 96.1 0.2 4.4E-06 40.1 11.9 117 28-148 27-167 (331)
80 PF13098 Thioredoxin_2: Thiore 95.8 0.032 7E-07 37.2 5.5 85 57-143 4-112 (112)
81 KOG0912 Thiol-disulfide isomer 95.7 0.068 1.5E-06 42.8 7.7 117 20-145 87-206 (375)
82 PRK03147 thiol-disulfide oxido 95.6 0.33 7.2E-06 34.7 10.7 87 58-146 61-171 (173)
83 TIGR02187 GlrX_arch Glutaredox 95.2 0.28 6E-06 37.0 9.5 72 72-147 38-111 (215)
84 KOG4277 Uncharacterized conser 95.0 0.31 6.7E-06 39.2 9.2 117 18-145 111-229 (468)
85 TIGR01295 PedC_BrcD bacterioci 94.7 0.52 1.1E-05 32.5 8.9 98 43-144 8-121 (122)
86 TIGR02740 TraF-like TraF-like 94.4 0.74 1.6E-05 36.2 10.3 88 59-148 167-265 (271)
87 PRK14018 trifunctional thiored 94.2 0.78 1.7E-05 39.5 10.7 106 39-146 37-172 (521)
88 cd02952 TRP14_like Human TRX-r 93.9 0.59 1.3E-05 32.3 7.8 66 74-143 47-118 (119)
89 KOG0191 Thioredoxin/protein di 93.6 1.2 2.7E-05 36.5 10.5 96 51-151 40-138 (383)
90 cd02991 UAS_ETEA UAS family, E 93.4 1.7 3.7E-05 29.7 9.6 68 80-149 45-115 (116)
91 cd02986 DLP Dim1 family, Dim1- 93.0 1.3 2.8E-05 30.4 8.2 61 58-122 14-77 (114)
92 KOG0191 Thioredoxin/protein di 92.6 3.5 7.6E-05 33.8 11.8 130 17-150 112-255 (383)
93 PF13728 TraF: F plasmid trans 92.0 1.9 4.1E-05 32.7 8.9 78 62-141 124-212 (215)
94 PRK00293 dipZ thiol:disulfide 91.4 2.7 5.9E-05 36.6 10.3 67 78-147 500-570 (571)
95 TIGR02739 TraF type-F conjugat 90.8 3.8 8.3E-05 32.1 9.7 83 62-146 154-247 (256)
96 KOG0907 Thioredoxin [Posttrans 90.2 2 4.4E-05 28.9 6.8 78 60-145 23-104 (106)
97 PF02114 Phosducin: Phosducin; 90.2 6.1 0.00013 31.1 10.3 102 39-146 123-237 (265)
98 PF13778 DUF4174: Domain of un 90.1 4.5 9.7E-05 27.7 9.2 85 59-146 10-111 (118)
99 cd02955 SSP411 TRX domain, SSP 90.1 2.6 5.7E-05 29.1 7.4 97 47-147 4-119 (124)
100 PRK13703 conjugal pilus assemb 90.0 4.8 0.0001 31.4 9.5 87 62-150 147-244 (248)
101 PTZ00062 glutaredoxin; Provisi 88.7 6.6 0.00014 29.7 9.2 59 51-122 9-71 (204)
102 cd03026 AhpF_NTD_C TRX-GRX-lik 88.5 3.7 8.1E-05 26.5 6.9 59 56-119 9-71 (89)
103 TIGR00385 dsbE periplasmic pro 88.2 3.2 6.9E-05 30.0 7.1 44 103-148 129-172 (173)
104 cd02966 TlpA_like_family TlpA- 87.9 5.2 0.00011 25.5 8.5 64 58-123 19-107 (116)
105 cd02973 TRX_GRX_like Thioredox 87.1 4.5 9.8E-05 24.0 6.8 42 74-120 18-59 (67)
106 PRK15412 thiol:disulfide inter 86.9 3.2 6.9E-05 30.4 6.5 43 106-150 137-179 (185)
107 cd03011 TlpA_like_ScsD_MtbDsbE 84.3 9.8 0.00021 25.3 9.0 38 101-141 83-120 (123)
108 PF07449 HyaE: Hydrogenase-1 e 82.6 9.1 0.0002 25.9 6.6 76 43-122 11-91 (107)
109 cd02959 ERp19 Endoplasmic reti 82.2 8.5 0.00018 26.1 6.5 71 52-123 13-86 (117)
110 PF13905 Thioredoxin_8: Thiore 81.7 11 0.00023 23.9 8.3 23 74-96 20-44 (95)
111 cd03069 PDI_b_ERp57 PDIb famil 78.5 1.7 3.6E-05 28.8 2.0 20 20-39 85-104 (104)
112 TIGR00412 redox_disulf_2 small 76.5 15 0.00033 22.6 6.2 60 72-143 14-75 (76)
113 cd03010 TlpA_like_DsbE TlpA-li 76.3 8.7 0.00019 25.8 5.2 36 102-139 91-126 (127)
114 cd02969 PRX_like1 Peroxiredoxi 75.1 27 0.00059 24.8 11.3 49 103-153 101-158 (171)
115 PF13192 Thioredoxin_3: Thiore 74.2 18 0.00038 22.3 6.7 59 74-144 17-76 (76)
116 TIGR02738 TrbB type-F conjugat 74.2 29 0.00063 24.8 11.2 86 61-146 53-152 (153)
117 PLN02919 haloacid dehalogenase 73.4 38 0.00083 31.9 9.9 89 58-148 420-537 (1057)
118 PF11009 DUF2847: Protein of u 72.2 18 0.00039 24.4 5.7 90 49-140 8-105 (105)
119 cd02981 PDI_b_family Protein D 72.0 3.2 6.9E-05 26.6 2.0 19 20-38 79-97 (97)
120 cd03009 TryX_like_TryX_NRX Try 70.8 29 0.00063 23.3 7.6 20 102-123 90-109 (131)
121 TIGR03143 AhpF_homolog putativ 69.3 27 0.00058 30.2 7.6 103 30-143 448-554 (555)
122 PF13899 Thioredoxin_7: Thiore 66.2 22 0.00049 22.0 5.0 65 53-122 12-82 (82)
123 KOG1672 ATP binding protein [P 65.2 58 0.0013 24.7 8.7 109 30-144 56-175 (211)
124 cd03066 PDI_b_Calsequestrin_mi 64.1 6.2 0.00014 25.9 2.2 20 20-39 81-101 (102)
125 TIGR03143 AhpF_homolog putativ 63.8 71 0.0015 27.6 9.1 67 51-122 357-428 (555)
126 PF05768 DUF836: Glutaredoxin- 63.5 14 0.00031 23.1 3.7 64 74-144 17-81 (81)
127 cd03007 PDI_a_ERp29_N PDIa fam 63.3 6.1 0.00013 27.1 2.0 19 20-38 96-115 (116)
128 PRK15317 alkyl hydroperoxide r 60.9 53 0.0011 28.1 7.8 94 20-119 75-175 (517)
129 PLN02399 phospholipid hydroper 57.6 86 0.0019 24.2 10.1 34 115-148 202-235 (236)
130 cd03070 PDI_b_ERp44 PDIb famil 57.2 42 0.00092 21.9 5.1 42 55-96 13-54 (91)
131 KOG2792 Putative cytochrome C 56.1 22 0.00048 28.0 4.2 53 28-85 159-223 (280)
132 PF07912 ERp29_N: ERp29, N-ter 54.9 14 0.00031 25.7 2.7 26 15-40 93-120 (126)
133 KOG2501 Thioredoxin, nucleored 53.1 64 0.0014 23.4 5.9 21 101-123 105-125 (157)
134 cd02964 TryX_like_family Trypa 51.3 74 0.0016 21.5 7.8 18 104-123 92-109 (132)
135 PF02885 Glycos_trans_3N: Glyc 48.7 10 0.00022 23.0 1.1 22 133-154 14-35 (66)
136 KOG3170 Conserved phosducin-li 47.5 1.3E+02 0.0027 23.1 7.8 108 29-145 79-199 (240)
137 PRK13728 conjugal transfer pro 46.4 1.2E+02 0.0026 22.5 10.4 75 74-148 88-172 (181)
138 PF10281 Ish1: Putative stress 46.4 25 0.00053 18.8 2.3 20 25-44 3-22 (38)
139 cd03012 TlpA_like_DipZ_like Tl 46.4 87 0.0019 20.9 6.3 20 102-123 96-115 (126)
140 CHL00005 rps16 ribosomal prote 46.1 24 0.00051 22.7 2.5 39 4-42 26-64 (82)
141 PF00837 T4_deiodinase: Iodoth 45.8 41 0.00089 26.1 4.2 53 41-93 82-142 (237)
142 KOG0914 Thioredoxin-like prote 45.6 25 0.00054 27.2 3.0 46 75-122 164-214 (265)
143 TIGR03140 AhpF alkyl hydropero 44.9 1.6E+02 0.0036 25.1 8.3 85 29-119 88-176 (515)
144 TIGR01626 ytfJ_HI0045 conserve 44.3 91 0.002 23.1 5.8 63 76-144 112-177 (184)
145 PF09695 YtfJ_HI0045: Bacteria 43.0 1E+02 0.0022 22.4 5.7 54 90-148 106-159 (160)
146 KOG3196 NADH:ubiquinone oxidor 41.3 44 0.00096 25.3 3.6 33 115-154 168-200 (233)
147 PF11303 DUF3105: Protein of u 38.4 1.4E+02 0.003 20.9 8.4 71 61-151 51-122 (130)
148 cd02967 mauD Methylamine utili 37.8 1.1E+02 0.0024 19.6 6.7 53 58-110 21-77 (114)
149 PTZ00056 glutathione peroxidas 35.8 1.8E+02 0.0039 21.5 9.3 33 117-149 148-180 (199)
150 PF14595 Thioredoxin_9: Thiore 35.4 35 0.00076 23.6 2.3 75 46-123 28-107 (129)
151 PF00988 CPSase_sm_chain: Carb 34.8 13 0.00029 26.1 0.0 48 9-56 71-121 (131)
152 PRK12564 carbamoyl phosphate s 34.4 63 0.0014 26.6 3.9 58 9-66 73-134 (360)
153 COG4232 Thiol:disulfide interc 33.1 2.3E+02 0.0051 25.0 7.2 59 87-147 508-568 (569)
154 PRK00040 rpsP 30S ribosomal pr 33.0 53 0.0012 20.7 2.6 39 4-42 26-68 (75)
155 PF08806 Sep15_SelM: Sep15/Sel 32.8 53 0.0012 20.8 2.6 32 114-145 42-74 (78)
156 PF10309 DUF2414: Protein of u 32.3 45 0.00098 20.2 2.1 22 10-38 7-28 (62)
157 TIGR02661 MauD methylamine deh 30.7 2.1E+02 0.0046 20.8 10.1 36 113-150 146-182 (189)
158 PRK13190 putative peroxiredoxi 28.7 2.4E+02 0.0053 20.8 10.0 53 101-153 100-164 (202)
159 cd02968 SCO SCO (an acronym fo 28.6 1.4E+02 0.0031 20.0 4.5 11 74-84 42-52 (142)
160 COG2099 CobK Precorrin-6x redu 28.3 86 0.0019 24.6 3.6 32 17-48 44-75 (257)
161 PF07034 ORC3_N: Origin recogn 28.3 1.8E+02 0.0038 23.5 5.5 70 26-95 166-237 (330)
162 COG2761 FrnE Predicted dithiol 27.9 1.6E+02 0.0035 22.7 4.9 46 102-154 175-220 (225)
163 PF07735 FBA_2: F-box associat 27.8 89 0.0019 18.5 3.0 21 133-153 43-63 (70)
164 PRK14525 rpsP 30S ribosomal pr 27.6 69 0.0015 20.9 2.5 39 4-42 27-67 (88)
165 PF09949 DUF2183: Uncharacteri 27.2 1.9E+02 0.0041 19.1 6.8 22 24-45 8-30 (100)
166 TIGR03677 rpl7ae 50S ribosomal 27.0 2.1E+02 0.0045 19.4 5.4 42 28-69 58-100 (117)
167 PF12098 DUF3574: Protein of u 26.9 1.3E+02 0.0029 20.2 3.9 61 24-86 15-86 (104)
168 PRK05583 ribosomal protein L7A 26.5 2E+02 0.0042 19.1 4.7 43 24-66 44-86 (104)
169 CHL00197 carA carbamoyl-phosph 26.5 1E+02 0.0022 25.7 3.9 57 10-66 76-136 (382)
170 TIGR01368 CPSaseIIsmall carbam 26.4 1.2E+02 0.0025 25.1 4.2 58 9-66 69-130 (358)
171 PF09494 Slx4: Slx4 endonuclea 26.2 55 0.0012 19.7 1.8 35 24-58 23-57 (64)
172 PF05619 DUF787: Borrelia burg 26.0 2.3E+02 0.005 23.0 5.6 30 17-48 96-125 (362)
173 KOG0908 Thioredoxin-like prote 25.4 3.4E+02 0.0074 21.6 6.3 66 74-147 40-106 (288)
174 cd00072 GYF GYF domain: contai 25.2 78 0.0017 18.6 2.3 21 23-43 14-34 (57)
175 PF09822 ABC_transp_aux: ABC-t 25.1 2.5E+02 0.0055 21.5 5.8 66 46-111 12-88 (271)
176 PF14237 DUF4339: Domain of un 25.1 88 0.0019 17.1 2.4 20 23-42 11-30 (45)
177 cd01611 GABARAP Ubiquitin doma 25.0 2.3E+02 0.0049 19.2 4.9 23 126-148 43-65 (112)
178 TIGR02196 GlrX_YruB Glutaredox 24.9 1.4E+02 0.0031 16.9 5.1 49 87-144 24-74 (74)
179 PF02213 GYF: GYF domain; Int 24.6 43 0.00094 19.5 1.1 21 23-43 13-33 (57)
180 KOG1364 Predicted ubiquitin re 23.6 2.7E+02 0.0057 23.0 5.6 53 91-147 136-189 (356)
181 TIGR00002 S16 ribosomal protei 22.8 98 0.0021 19.6 2.5 39 4-42 25-65 (78)
182 PF04609 MCR_C: Methyl-coenzym 22.8 1.9E+02 0.0041 22.9 4.5 58 20-89 5-64 (268)
183 PRK14524 rpsP 30S ribosomal pr 22.6 95 0.0021 20.5 2.5 39 4-42 26-66 (94)
184 PF02645 DegV: Uncharacterised 22.5 2.8E+02 0.0061 21.5 5.6 77 20-97 34-118 (280)
185 smart00444 GYF Contains conser 22.4 96 0.0021 18.1 2.3 22 23-44 13-34 (56)
186 PF07308 DUF1456: Protein of u 20.5 74 0.0016 19.6 1.5 31 25-55 29-59 (68)
187 PF13490 zf-HC2: Putative zinc 20.2 76 0.0016 16.3 1.4 16 138-153 3-18 (36)
No 1
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.88 E-value=4e-22 Score=136.83 Aligned_cols=106 Identities=25% Similarity=0.235 Sum_probs=94.6
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecCChhH-HHHHHHHHHh---hcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVHDSEA-KSIFQETARA---FKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA 118 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~-~~~~~~vA~~---~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~ 118 (155)
|.++|++|+..|++++.|..++|++.++.+. .+.++++|++ +|+++.|+++|++. +.+.+++||++++++|+++
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~--~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDK--FRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechH--hhhHHHHcCCCHhHCCEEE
Confidence 5789999999999999999555555556777 9999999999 99999999999997 5679999999988899999
Q ss_pred EEecCCCeeec-CCCCCCHHHHHHHHHHHHcCC
Q 031686 119 VASIRKRKKYV-LNGELTLSNVKSFALDFLGDK 150 (155)
Q Consensus 119 i~~~~~~~kY~-~~~~~t~~~I~~Fi~~f~~Gk 150 (155)
|.+.+++.||+ +++++|+++|.+|+++|++||
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 99986557998 677899999999999999996
No 2
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.87 E-value=5.6e-21 Score=140.17 Aligned_cols=125 Identities=29% Similarity=0.428 Sum_probs=106.7
Q ss_pred EEeccCC-cCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEE
Q 031686 19 FIFSDVS-FTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYS 93 (155)
Q Consensus 19 ~~~y~g~-~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~v 93 (155)
...|+|+ ++.++|.+||+.+++|+|.++|++|+..++..+.|. +++|.+.+ ..+. .+.++++|+++++++.|+|+
T Consensus 54 ~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~ 133 (184)
T PF13848_consen 54 PVVYDGDKFTPEELKKFIKKNSFPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYV 133 (184)
T ss_dssp EEEESSSTTSHHHHHHHHHHHSSTSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEE
T ss_pred ceecccccCCHHHHHHHHHHhccccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 3567787 899999999999999999999999999999999885 66665443 2456 88899999999999999999
Q ss_pred eCCCcchhhhhhhhCCCCCCcceEEEEecCCCeee-cCCCCCCHHHHHHHHHH
Q 031686 94 QIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKY-VLNGELTLSNVKSFALD 145 (155)
Q Consensus 94 d~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY-~~~~~~t~~~I~~Fi~~ 145 (155)
|.+. +.+++++||+++.++|+++|++..++++| .+.++++.++|.+|+++
T Consensus 134 d~~~--~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 134 DADD--FPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp ETTT--THHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred ehHH--hHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9995 68899999999889999999997666544 34578999999999986
No 3
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.5e-19 Score=148.36 Aligned_cols=146 Identities=29% Similarity=0.391 Sum_probs=120.2
Q ss_pred CceeeeeeeeEE--EeccCCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC--ChhH-HHHHHHHH
Q 031686 8 GRFIHALSVFCF--IFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH--DSEA-KSIFQETA 81 (155)
Q Consensus 8 ~~~~~~~~~~~~--~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~--~~~~-~~~~~~vA 81 (155)
++++|..+=.+- ..|+|+++.+.|.+||..+++|+|+++|+++...++.+..+. +++|.+.. +++. ++.++++|
T Consensus 202 ~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vA 281 (493)
T KOG0190|consen 202 TFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVA 281 (493)
T ss_pred cceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHH
Confidence 345665555443 355789999999999999999999999999999999997777 66666554 5778 99999999
Q ss_pred HhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHHHcCCCccCC
Q 031686 82 RAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDFLGDKLRNQK 155 (155)
Q Consensus 82 ~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f~~Gkl~p~~ 155 (155)
++||+++.|+++|... +.+.+++||++.+..|..++.....+.||++++ +++.++|++|+++|++|+++||.
T Consensus 282 k~f~~~l~Fi~~d~e~--~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~ 354 (493)
T KOG0190|consen 282 KKFKGKLRFILIDPES--FARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHL 354 (493)
T ss_pred HhcccceEEEEEChHH--hhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCcccccc
Confidence 9999999999997765 678999999998888833344434567999885 59999999999999999999983
No 4
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.78 E-value=1.1e-18 Score=119.62 Aligned_cols=102 Identities=19% Similarity=0.328 Sum_probs=83.9
Q ss_pred eEecCCCchhhhhcCCCceEEEEee----cCChhH-HHHHHHHHHhhc-CceEEEEEeCCCcchhhhhhhhCCCCCC--c
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAA----VHDSEA-KSIFQETARAFK-GKLLFVYSQIYPKLKGQIFDYFGVTCYT--S 114 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~----~~~~~~-~~~~~~vA~~~~-~~i~F~~vd~~~~~~~~~~~~~gl~~~~--~ 114 (155)
|+++|.+|+..++..+..++++-.+ .++.+. ++.++++|+++| +++.|+|+|.+. +.+.+++||+++++ .
T Consensus 1 v~~~~~en~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~--~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 1 VGHRTKDNRAQFTKKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKED--FSHELEEFGLDFSGGEK 78 (111)
T ss_pred CCeeccchHHHhccCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHH--HHHHHHHcCCCcccCCC
Confidence 5789999999998666433333221 123567 999999999999 799999999996 66799999999877 9
Q ss_pred ceEEEEecCCCeeecCCCCC-CHHHHHHHHHHHH
Q 031686 115 RVIAVASIRKRKKYVLNGEL-TLSNVKSFALDFL 147 (155)
Q Consensus 115 P~v~i~~~~~~~kY~~~~~~-t~~~I~~Fi~~f~ 147 (155)
|+++|++.+ ++||++++++ |.++|.+|+++|+
T Consensus 79 P~~~i~~~~-~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 79 PVVAIRTAK-GKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CEEEEEeCC-CCccCCCcccCCHHHHHHHHHHhC
Confidence 999999975 4799988889 9999999999984
No 5
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.73 E-value=7.6e-17 Score=113.50 Aligned_cols=109 Identities=15% Similarity=0.237 Sum_probs=88.5
Q ss_pred CCeEecCCCch-hhhhcCCCce-EEEEeecC------ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCC
Q 031686 41 PPMITYSRETT-PLILNSPLKL-LWLFAAVH------DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVT 110 (155)
Q Consensus 41 P~v~e~~~~~~-~~i~~~~~~~-v~lf~~~~------~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~ 110 (155)
|-|.+++.++. ...... +.+ ++.|.+.. +.++ .+.++++|++||++ +.|+|+|++. +..++++||++
T Consensus 2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~ 78 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIG 78 (130)
T ss_pred CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCC
Confidence 56788886544 445544 356 66666531 2456 88999999999999 9999999997 56799999999
Q ss_pred CCCcceEEEEecCCCeeec-CCCCCCHHHHHHHHHHHHcCCCcc
Q 031686 111 CYTSRVIAVASIRKRKKYV-LNGELTLSNVKSFALDFLGDKLRN 153 (155)
Q Consensus 111 ~~~~P~v~i~~~~~~~kY~-~~~~~t~~~I~~Fi~~f~~Gkl~p 153 (155)
+++.|++++++.+.+ ||. +.+++|.++|.+|+++|++|++..
T Consensus 79 ~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 79 GFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred ccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCccc
Confidence 888999999998655 997 678999999999999999999864
No 6
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.71 E-value=2.4e-16 Score=130.31 Aligned_cols=131 Identities=26% Similarity=0.448 Sum_probs=111.8
Q ss_pred eccCCc--CHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC-C---hhH-HHHHHHHHHhhcC-ceEEEE
Q 031686 21 FSDVSF--TISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH-D---SEA-KSIFQETARAFKG-KLLFVY 92 (155)
Q Consensus 21 ~y~g~~--~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-~---~~~-~~~~~~vA~~~~~-~i~F~~ 92 (155)
.|+|+. +.++|.+||..+++|++.+++.+++..++..+ |.+++|...+ + .+. .+.++++|+++++ .+.|++
T Consensus 195 ~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~ 273 (462)
T TIGR01130 195 KVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAV 273 (462)
T ss_pred cccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 466665 56899999999999999999999999999887 7766665543 2 256 8899999999997 899999
Q ss_pred EeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHHHcCCCccC
Q 031686 93 SQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDFLGDKLRNQ 154 (155)
Q Consensus 93 vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f~~Gkl~p~ 154 (155)
+|... +.++++.||++...+|+++|.+..+..+|.+.+ +++.++|.+|++++++|+++|+
T Consensus 274 ~d~~~--~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~ 334 (462)
T TIGR01130 274 ADEED--FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPY 334 (462)
T ss_pred ecHHH--hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCee
Confidence 99886 788999999998789999999976435788876 7999999999999999999985
No 7
>PTZ00102 disulphide isomerase; Provisional
Probab=99.69 E-value=4e-16 Score=130.01 Aligned_cols=125 Identities=19% Similarity=0.281 Sum_probs=104.7
Q ss_pred CCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecCChhH-HHHHHHHHHhhcCceEEEEEeCCCcchh-
Q 031686 24 VSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEA-KSIFQETARAFKGKLLFVYSQIYPKLKG- 101 (155)
Q Consensus 24 g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~- 101 (155)
+..+.++|.+||..+++|++.++|.+++..++..+.++++++...++.+. .+.++++|+++++++.|+|+|++. +.
T Consensus 215 ~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~--~~~ 292 (477)
T PTZ00102 215 MGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCGTTEDYDKYKSVVRKVARKLREKYAFVWLDTEQ--FGS 292 (477)
T ss_pred CCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEecCHHHHHHHHHHHHHHHHhccCceEEEEEechh--cch
Confidence 44588999999999999999999999999999998766655544445566 889999999999999999999996 44
Q ss_pred hhhhhhCCCCCCcceEEEEecCCCeeecCCCC----CCHHHHHHHHHHHHcCCCccC
Q 031686 102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE----LTLSNVKSFALDFLGDKLRNQ 154 (155)
Q Consensus 102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~----~t~~~I~~Fi~~f~~Gkl~p~ 154 (155)
++++.||++. +|++++.+.. + +|.++++ ++.++|.+|++++.+|+++|+
T Consensus 293 ~~~~~~gi~~--~P~~~i~~~~-~-~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~~~ 345 (477)
T PTZ00102 293 HAKEHLLIEE--FPGLAYQSPA-G-RYLLPPAKESFDSVEALIEFFKDVEAGKVEKS 345 (477)
T ss_pred hHHHhcCccc--CceEEEEcCC-c-ccCCCccccccCCHHHHHHHHHHHhCCCCCcc
Confidence 4889999974 8999888742 3 6766532 789999999999999999986
No 8
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.59 E-value=8e-15 Score=114.36 Aligned_cols=129 Identities=22% Similarity=0.261 Sum_probs=108.2
Q ss_pred eccCCcC-HHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecCChhHHHHHH-HHHHhhcC---ceEEEEEeC
Q 031686 21 FSDVSFT-ISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDSEAKSIFQ-ETARAFKG---KLLFVYSQI 95 (155)
Q Consensus 21 ~y~g~~~-~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~-~vA~~~~~---~i~F~~vd~ 95 (155)
.|.|+++ .++|+.||.+.+.|+|.|+|-+|++.+-+.+.|.+++|..++|.+..+.|. .+|++.-+ .+.|+.+|+
T Consensus 189 ~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG 268 (375)
T KOG0912|consen 189 EFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELDDETLAINFLTADG 268 (375)
T ss_pred ccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhhhhhhccceeecCc
Confidence 5899984 699999999999999999999999999999999999999887643344555 56666543 388999999
Q ss_pred CCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC--C-CCHHHHHHHHHHHHcCCCcc
Q 031686 96 YPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG--E-LTLSNVKSFALDFLGDKLRN 153 (155)
Q Consensus 96 ~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~--~-~t~~~I~~Fi~~f~~Gkl~p 153 (155)
+. +.+.+.+||-+++++|.++|-... ..|+++. + ..+..|++|+.|..+|||.+
T Consensus 269 ~~--f~hpL~HlgKs~~DLPviaIDsF~--Hmylfp~f~di~~pGkLkqFv~DL~sgklHr 325 (375)
T KOG0912|consen 269 KV--FKHPLRHLGKSPDDLPVIAIDSFR--HMYLFPDFNDINIPGKLKQFVADLHSGKLHR 325 (375)
T ss_pred ce--ecchHHHhCCCcccCcEEEeeccc--eeeecCchhhhcCccHHHHHHHHHhCchhhH
Confidence 96 889999999999999999987764 4677652 4 57889999999999999864
No 9
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.54 E-value=6.4e-14 Score=93.76 Aligned_cols=97 Identities=38% Similarity=0.520 Sum_probs=79.5
Q ss_pred CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCC
Q 031686 49 ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKR 125 (155)
Q Consensus 49 ~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~ 125 (155)
+++..+...+.|.+++|.... +.+. ...++++|+++++++.|+|+|.++ +.++++.||+..+..|++++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 3 ETFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred hHHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccc
Confidence 455555555677888887664 3466 889999999999999999999997 67899999998667999999998656
Q ss_pred eeecCCC-CCCHHHHHHHHHHHH
Q 031686 126 KKYVLNG-ELTLSNVKSFALDFL 147 (155)
Q Consensus 126 ~kY~~~~-~~t~~~I~~Fi~~f~ 147 (155)
++|.+.+ .++.++|.+|+++++
T Consensus 81 ~k~~~~~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 81 KKYLMPEEELTAESLEEFVEDFL 103 (103)
T ss_pred cccCCCccccCHHHHHHHHHhhC
Confidence 7887764 569999999999874
No 10
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.22 E-value=5.4e-10 Score=88.93 Aligned_cols=135 Identities=17% Similarity=0.164 Sum_probs=90.9
Q ss_pred eeEEEecc-------C-CcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce--EEEEeecCC--hhH-HHHHHHHHH
Q 031686 16 VFCFIFSD-------V-SFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL--LWLFAAVHD--SEA-KSIFQETAR 82 (155)
Q Consensus 16 ~~~~~~y~-------g-~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~--v~lf~~~~~--~~~-~~~~~~vA~ 82 (155)
|.+|..|. | +.+.++|++||+.|..|....++++++...+..+..- ++.|++.++ .-+ .+.++++|+
T Consensus 216 v~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~ 295 (383)
T PF01216_consen 216 VDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVAR 295 (383)
T ss_dssp EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHH
T ss_pred eeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHH
Confidence 55566662 2 4688999999999999999999999998899887533 777887654 345 889999999
Q ss_pred hhcC--ceEEEEEeCCCcchhhhh----hhhCCCCCCcceEEEEecCCC--eeecCCC--C-CCHHHHHHHHHHHHcCCC
Q 031686 83 AFKG--KLLFVYSQIYPKLKGQIF----DYFGVTCYTSRVIAVASIRKR--KKYVLNG--E-LTLSNVKSFALDFLGDKL 151 (155)
Q Consensus 83 ~~~~--~i~F~~vd~~~~~~~~~~----~~~gl~~~~~P~v~i~~~~~~--~kY~~~~--~-~t~~~I~~Fi~~f~~Gkl 151 (155)
.+.+ .+.++|+|.+. ++-+. +.||++-. -|++.+++.+.. -.+.+++ + -|.+.|..||.++++|++
T Consensus 296 ~nt~np~LsivwIDPD~--fPllv~yWE~tF~Idl~-~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i 372 (383)
T PF01216_consen 296 DNTDNPDLSIVWIDPDD--FPLLVPYWEKTFGIDLS-RPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKI 372 (383)
T ss_dssp HCTT-TT--EEEE-GGG---HHHHHHHHHHHTT-TT-S-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCC
T ss_pred hcCcCCceeEEEECCCC--CchhHHHHHhhcCcccc-CCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCC
Confidence 8875 59999999996 44333 56788754 599999998643 2445653 2 589999999999999998
Q ss_pred cc
Q 031686 152 RN 153 (155)
Q Consensus 152 ~p 153 (155)
.+
T Consensus 373 ~~ 374 (383)
T PF01216_consen 373 NT 374 (383)
T ss_dssp TB
T ss_pred CC
Confidence 75
No 11
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=98.82 E-value=2.8e-08 Score=66.66 Aligned_cols=101 Identities=28% Similarity=0.418 Sum_probs=70.3
Q ss_pred EecCCCchhhhhcCCCceEEEEeecCC---hhH-HHHHHHHHHhh----c--C---ceEEEEEeCCCcchhhhhhhhCCC
Q 031686 44 ITYSRETTPLILNSPLKLLWLFAAVHD---SEA-KSIFQETARAF----K--G---KLLFVYSQIYPKLKGQIFDYFGVT 110 (155)
Q Consensus 44 ~e~~~~~~~~i~~~~~~~v~lf~~~~~---~~~-~~~~~~vA~~~----~--~---~i~F~~vd~~~~~~~~~~~~~gl~ 110 (155)
.++|+.++.++-+. |.+++|.+.++ .+. ++.+..+|++. + + .+.|+....++ -...+.++.++.
T Consensus 2 ~~Lse~~a~~Ln~~--p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede-~tdsLRDf~nL~ 78 (116)
T cd03071 2 LELSESNAVQLNEG--PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD-MTDSLRDYTNLP 78 (116)
T ss_pred ccccHHHHHhhcCC--ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch-HHHHHHHhcCCC
Confidence 35677776665333 57888886642 456 78888888753 2 1 14554433322 244555677887
Q ss_pred CCCcceEEEEecCCCeeecCC-CCCCHHHHHHHHHHHHc
Q 031686 111 CYTSRVIAVASIRKRKKYVLN-GELTLSNVKSFALDFLG 148 (155)
Q Consensus 111 ~~~~P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~f~~ 148 (155)
+..|.++|++....++|.++ +++|.+++++|+.+|+.
T Consensus 79 -d~~P~LviLDip~r~~~v~~~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 79 -EAAPLLTILDMSARAKYVMDVEEITPAIVEAFVSDFLA 116 (116)
T ss_pred -ccCceEEEEeccccceEeCchHhcCHHHHHHHHHHhhC
Confidence 46899999999777899988 58999999999999974
No 12
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.70 E-value=4.3e-07 Score=59.90 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=77.0
Q ss_pred eEecCCCchhhhhcC-CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686 43 MITYSRETTPLILNS-PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA 118 (155)
Q Consensus 43 v~e~~~~~~~~i~~~-~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~ 118 (155)
|..+|.+++.+.... +.+.++.|.... .-.. ...+.++|+++.+++.|+.+|.+. ...+++.+++.. .|++.
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~v~~--~Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDE--NKELCKKYGVKS--VPTII 76 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTT--SHHHHHHTTCSS--SSEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhc--cchhhhccCCCC--CCEEE
Confidence 457889999998887 556677777653 2345 778999999999899999999996 678899999974 89999
Q ss_pred EEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686 119 VASIRKRKKYVLNGELTLSNVKSFALD 145 (155)
Q Consensus 119 i~~~~~~~kY~~~~~~t~~~I~~Fi~~ 145 (155)
+++.. .....+.|..+.++|.+||++
T Consensus 77 ~~~~g-~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 77 FFKNG-KEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp EEETT-EEEEEEESSSSHHHHHHHHHH
T ss_pred EEECC-cEEEEEECCCCHHHHHHHHHc
Confidence 99853 222245677899999999975
No 13
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.60 E-value=9.2e-07 Score=58.61 Aligned_cols=97 Identities=16% Similarity=0.104 Sum_probs=73.9
Q ss_pred eEecCCCchhhhhcCCCc-eEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686 43 MITYSRETTPLILNSPLK-LLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA 118 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~-~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~ 118 (155)
|.+++.+++......+.+ .++.|.... .-.. ...|.++|+++++.+.|+.+|.+. +..+.+.||+.. .|++.
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~--~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV--HQSLAQQYGVRG--FPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc--hHHHHHHCCCCc--cCEEE
Confidence 567888888887655545 466666543 2345 678999999999899999999986 678889999964 89999
Q ss_pred EEecCCCeeecCCCCCCHHHHHHHH
Q 031686 119 VASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 119 i~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
+++......+.+.|+.+.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 9885423456677889999999986
No 14
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.59 E-value=8.2e-07 Score=59.29 Aligned_cols=99 Identities=20% Similarity=0.164 Sum_probs=74.6
Q ss_pred CCeEecCCCchhhhhcC-CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686 41 PPMITYSRETTPLILNS-PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV 116 (155)
Q Consensus 41 P~v~e~~~~~~~~i~~~-~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~ 116 (155)
|.+.+++.+++...... +.+.++.|...- .-.. ...+.++|+++++.+.|+.+|.+. +..+.+.+|+.. +|+
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~--~Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRA--YPT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCc--ccE
Confidence 56788998888887544 445566666553 2345 778999999998889999999996 678888899964 899
Q ss_pred EEEEecCCCeeecCCCCCC-HHHHHHHH
Q 031686 117 IAVASIRKRKKYVLNGELT-LSNVKSFA 143 (155)
Q Consensus 117 v~i~~~~~~~kY~~~~~~t-~~~I~~Fi 143 (155)
+.++.......+.+.|..+ .++|.+|+
T Consensus 77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9999864234555677776 89999885
No 15
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.57 E-value=1.8e-06 Score=57.44 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=75.0
Q ss_pred CCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686 41 PPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI 117 (155)
Q Consensus 41 P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v 117 (155)
|-+.+++.++++.....+.+.++.|.... .-.. ...|.++|+++++.+.|+.+|.+. ...+.+.+++. .+|++
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~--~~Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVN--SYPSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCC--ccCEE
Confidence 45788999999988877766677776553 2345 778999999999889999999996 57888899986 48999
Q ss_pred EEEecCCCeeecCCCCCCHHHHHHH
Q 031686 118 AVASIRKRKKYVLNGELTLSNVKSF 142 (155)
Q Consensus 118 ~i~~~~~~~kY~~~~~~t~~~I~~F 142 (155)
.++.. +.....+.|..+.++|.+|
T Consensus 77 ~~~~~-g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPS-GMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EEEcC-CCCcccCCCCCCHHHHHhh
Confidence 98863 2223456678899999887
No 16
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.55 E-value=1.1e-06 Score=59.14 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=77.3
Q ss_pred CCeEecCCCchhhhhcCCCce--EEEEeecC--ChhH-HHHHHHHHHhhcC--ceEEEEEeCCCcchhhhhh----hhCC
Q 031686 41 PPMITYSRETTPLILNSPLKL--LWLFAAVH--DSEA-KSIFQETARAFKG--KLLFVYSQIYPKLKGQIFD----YFGV 109 (155)
Q Consensus 41 P~v~e~~~~~~~~i~~~~~~~--v~lf~~~~--~~~~-~~~~~~vA~~~~~--~i~F~~vd~~~~~~~~~~~----~~gl 109 (155)
|....++++++..+.+.+..- ++.|+..+ +.-+ .+.++++|+++++ ++.|+|+|.+. ++-+.. .||+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~--FPllv~yWektF~I 78 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDD--FPLLVPYWEKTFGI 78 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCcc--CchhhHHHHhhcCc
Confidence 556678888888888776433 67777665 3445 8899999999875 59999999997 554444 4677
Q ss_pred CCCCcceEEEEecCCC--eeecCCC--C-CCHHHHHHHHHHHH
Q 031686 110 TCYTSRVIAVASIRKR--KKYVLNG--E-LTLSNVKSFALDFL 147 (155)
Q Consensus 110 ~~~~~P~v~i~~~~~~--~kY~~~~--~-~t~~~I~~Fi~~f~ 147 (155)
+-. -|+|.+++.+.. --|.+++ + -|.+.|..||++++
T Consensus 79 Dl~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 79 DLF-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ccC-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 753 699999998532 3566754 3 68999999999874
No 17
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.1e-06 Score=73.79 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=89.8
Q ss_pred EEeccCCcCHHHHHHHHHhCCCCCeEecCC-CchhhhhcCCCce-EEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCC
Q 031686 19 FIFSDVSFTISVIDDFISLNKIPPMITYSR-ETTPLILNSPLKL-LWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIY 96 (155)
Q Consensus 19 ~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~-~~~~~i~~~~~~~-v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~ 96 (155)
-..|+|+++.+.|.+|+++.+.|.+.++.. +.++.+.+. .+. ++.|....++. .+.+..+|.+.++++.|+....
T Consensus 112 ~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~-~~~~vig~F~d~~~~-~~~~~~~a~~l~~d~~F~~ts~- 188 (493)
T KOG0190|consen 112 AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSK-KDVVVIGFFKDLESL-AESFFDAASKLRDDYKFAHTSD- 188 (493)
T ss_pred ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccC-CceEEEEEecccccc-hHHHHHHHHhccccceeeccCc-
Confidence 468999999999999999999999999985 556665555 455 66666543222 3678888999999999994322
Q ss_pred CcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686 97 PKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL 147 (155)
Q Consensus 97 ~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~ 147 (155)
..+++.++++.+..|.+++.+......+.++++++.+.|.+||+...
T Consensus 189 ----~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~ 235 (493)
T KOG0190|consen 189 ----SDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENS 235 (493)
T ss_pred ----HhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhc
Confidence 35677788764446667777764333344578899999999998754
No 18
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.50 E-value=2.1e-06 Score=56.53 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=72.9
Q ss_pred cCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC--ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEE
Q 031686 46 YSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG--KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVA 120 (155)
Q Consensus 46 ~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~--~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~ 120 (155)
++.+++......+.+.++.|.... .... ...+.++|+.+++ .+.|+.+|.+. ...+.+.||+.. .|++.++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~i~~--~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA--EKDLASRFGVSG--FPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc--hHHHHHhCCCCc--CCEEEEe
Confidence 356777887776666677777654 2344 6778889999887 69999999986 577888999864 8999998
Q ss_pred ecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686 121 SIRKRKKYVLNGELTLSNVKSFALDF 146 (155)
Q Consensus 121 ~~~~~~kY~~~~~~t~~~I~~Fi~~f 146 (155)
+... ..+.+.|..+.++|..||++.
T Consensus 77 ~~~~-~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGK-KPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCC-cceeecCCCCHHHHHHHHHhc
Confidence 8642 255667888999999999864
No 19
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.39 E-value=7e-06 Score=54.99 Aligned_cols=99 Identities=14% Similarity=0.157 Sum_probs=73.0
Q ss_pred eEecCCCchhhhhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686 43 MITYSRETTPLILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA 118 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~ 118 (155)
|.+++.+++....... .+.++.|.... .-.. ...+.++|+++++.+.|+.+|.+......+.+.||+.. .|++.
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~--~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG--FPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc--CCEEE
Confidence 5688999988876554 44566666553 2244 66789999999888889989888643567888899874 89999
Q ss_pred EEecCC----CeeecCCCCCCHHHHHHHH
Q 031686 119 VASIRK----RKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 119 i~~~~~----~~kY~~~~~~t~~~I~~Fi 143 (155)
+++... ...+.+.|..+.++|.+||
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHh
Confidence 998642 1234456788999999997
No 20
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.35 E-value=8.2e-06 Score=54.92 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=70.7
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhc------CceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFK------GKLLFVYSQIYPKLKGQIFDYFGVTCYT 113 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~------~~i~F~~vd~~~~~~~~~~~~~gl~~~~ 113 (155)
|.+++.+++++..+...+.++.|...- .-.. ...+.++|++++ +.+.|+.+|.+. +..+.+.||+. .
T Consensus 3 v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~--~~~l~~~~~v~--~ 78 (108)
T cd02996 3 IVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK--ESDIADRYRIN--K 78 (108)
T ss_pred eEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC--CHHHHHhCCCC--c
Confidence 678899999998877765566666542 2344 667888887753 258999999986 57888999997 4
Q ss_pred cceEEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686 114 SRVIAVASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
+|++.+..........+.|.-+.+.|.+||
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 899998874211124456778889999885
No 21
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.33 E-value=3e-06 Score=66.95 Aligned_cols=122 Identities=7% Similarity=0.081 Sum_probs=85.5
Q ss_pred cCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC-------ChhH-HHHHHHHHHhhcC------ceEEE
Q 031686 26 FTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH-------DSEA-KSIFQETARAFKG------KLLFV 91 (155)
Q Consensus 26 ~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~-------~~~~-~~~~~~vA~~~~~------~i~F~ 91 (155)
.+.++|..||...++|-+...+.-++..+-.+++-+++.+.+.. +... .+...++|+.+|+ ++.|.
T Consensus 218 ~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~ 297 (468)
T KOG4277|consen 218 GDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFA 297 (468)
T ss_pred CchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceee
Confidence 35789999999999999999999898888777754444444432 1244 6677788888775 58999
Q ss_pred EEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC---CCCHHHHHHHHHH----HHcCCCc
Q 031686 92 YSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG---ELTLSNVKSFALD----FLGDKLR 152 (155)
Q Consensus 92 ~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~---~~t~~~I~~Fi~~----f~~Gkl~ 152 (155)
|.|+... ...+.+..-..|.++|.+.++.+.|.-+. -.+.++|.+||++ +.+|.+.
T Consensus 298 hlDGnD~-----~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFientsegI~d~Tie 360 (468)
T KOG4277|consen 298 HLDGNDL-----ANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFIENTSEGIDDETIE 360 (468)
T ss_pred ccchhHH-----HHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHHhccccccccccee
Confidence 9999852 22222233346999999986554444222 3688999999999 5555544
No 22
>PRK10996 thioredoxin 2; Provisional
Probab=98.30 E-value=1.3e-05 Score=56.84 Aligned_cols=98 Identities=20% Similarity=0.246 Sum_probs=74.6
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV 119 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i 119 (155)
+.+++.++++.+.+.+++.++.|.... .-.. ...|.++++++.+.+.|+.+|.+. ...+.+.||+.. +|++++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~--~~~l~~~~~V~~--~Ptlii 112 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEA--ERELSARFRIRS--IPTIMI 112 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCC--CHHHHHhcCCCc--cCEEEE
Confidence 445677788888777766676676553 2344 668999999999889999999986 578889999964 899998
Q ss_pred EecCCCee-ecCCCCCCHHHHHHHHHHH
Q 031686 120 ASIRKRKK-YVLNGELTLSNVKSFALDF 146 (155)
Q Consensus 120 ~~~~~~~k-Y~~~~~~t~~~I~~Fi~~f 146 (155)
++ .|+. ..+.|..+.+.|.+|++..
T Consensus 113 ~~--~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FK--NGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EE--CCEEEEEEcCCCCHHHHHHHHHHh
Confidence 86 3443 3456778999999999864
No 23
>PRK09381 trxA thioredoxin; Provisional
Probab=98.30 E-value=2.2e-05 Score=52.80 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=74.6
Q ss_pred CeEecCCCchhh-hhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686 42 PMITYSRETTPL-ILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI 117 (155)
Q Consensus 42 ~v~e~~~~~~~~-i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v 117 (155)
-|.+++.+++.+ +...+.+.++.|.... .-.. ...+.++|+++.+++.|+.+|.+. ...+.+.|++. ..|++
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~--~~Pt~ 79 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIR--GIPTL 79 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCC--cCCEE
Confidence 366778778775 4555666666666553 2344 678899999999889999999986 56778888986 48999
Q ss_pred EEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686 118 AVASIRKRKKYVLNGELTLSNVKSFALDFL 147 (155)
Q Consensus 118 ~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~ 147 (155)
++++. +...+.+.|..+.+.|.+|+...+
T Consensus 80 ~~~~~-G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKN-GEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeC-CeEEEEecCCCCHHHHHHHHHHhc
Confidence 99863 223555677788999999998754
No 24
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.25 E-value=2.2e-05 Score=51.82 Aligned_cols=98 Identities=10% Similarity=0.163 Sum_probs=71.6
Q ss_pred eEecCCCchhhhhcCCC-ceEEEEeecC--ChhH-HHHHHHHHHhhc--CceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686 43 MITYSRETTPLILNSPL-KLLWLFAAVH--DSEA-KSIFQETARAFK--GKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV 116 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~-~~v~lf~~~~--~~~~-~~~~~~vA~~~~--~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~ 116 (155)
+.+++.+++........ +.++.|.... .-.. ...+.++|++++ +.+.|+.+|.+.+ +..+.+.|++. ..|+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~--~~P~ 78 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVS--GFPT 78 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCC--CcCE
Confidence 46788888888776554 5566666543 2344 678899999887 5688999988752 46788889986 4899
Q ss_pred EEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686 117 IAVASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
+.+++......+.+.|..+.++|.+||
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999985433455667788999999885
No 25
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.25 E-value=2.8e-05 Score=53.94 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=72.1
Q ss_pred CeEecCCCchhhhhcCCCce-EEEEeecCC----hh--H-HHHHHHHHHhh--cCceEEEEEeCCCcchhhhhhhhCCCC
Q 031686 42 PMITYSRETTPLILNSPLKL-LWLFAAVHD----SE--A-KSIFQETARAF--KGKLLFVYSQIYPKLKGQIFDYFGVTC 111 (155)
Q Consensus 42 ~v~e~~~~~~~~i~~~~~~~-v~lf~~~~~----~~--~-~~~~~~vA~~~--~~~i~F~~vd~~~~~~~~~~~~~gl~~ 111 (155)
.|.++|.+|+.+.......+ ++.|...-- -. . .-.+.++|.++ .+++.|+.+|.+. +.++++.||+.+
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~ 87 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDE 87 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCcc
Confidence 46777888888655554433 444443311 11 2 34567888888 7789999999997 689999999974
Q ss_pred CCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686 112 YTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL 147 (155)
Q Consensus 112 ~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~ 147 (155)
+|++.++.. |+.-.+.|..+.+.|.+||++..
T Consensus 88 --iPTl~lfk~--G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 88 --EDSIYVFKD--DEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred --ccEEEEEEC--CEEEEeeCCCCHHHHHHHHHHHh
Confidence 899999983 44334567789999999999865
No 26
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.24 E-value=1.4e-05 Score=51.83 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=70.6
Q ss_pred ecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhh--cCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686 45 TYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAF--KGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV 119 (155)
Q Consensus 45 e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~--~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i 119 (155)
+++.+++......+.+.++.|.... .... ...+.++|+.+ .+.+.|+.+|.+. ...+.+.||+. ..|++.+
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~--~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVR--GYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCC--CCCEEEE
Confidence 4566777887777776677777664 2345 77888999998 5789999999885 56888999996 4899999
Q ss_pred EecCCCeeecCCCCCCHHHHHHHH
Q 031686 120 ASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 120 ~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
++........+.|..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccCCCCcCHHHHHhhC
Confidence 986422334456667888888774
No 27
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.19 E-value=2.7e-05 Score=53.41 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCCeEecCCCchhhh---hcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhh-hhhCCCCC
Q 031686 40 IPPMITYSRETTPLI---LNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIF-DYFGVTCY 112 (155)
Q Consensus 40 ~P~v~e~~~~~~~~i---~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~-~~~gl~~~ 112 (155)
-+-|.+++.+|+.++ .+...+.++.|...- .... ...+.++|+++++.+.|+.+|.+. ...++ +.+++..
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~--~~~l~~~~~~I~~- 84 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW--PQGKCRKQKHFFY- 84 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC--ChHHHHHhcCCcc-
Confidence 356889999998875 355555566676542 2455 778999999999889999999986 45666 5788864
Q ss_pred CcceEEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686 113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
+|++.+.... ...-.+.|..+.+.|..|+
T Consensus 85 -~PTl~lf~~g-~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 -FPVIHLYYRS-RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred -cCEEEEEECC-ccceEEeCCCCHHHHHhhC
Confidence 8999988642 2233346778899888763
No 28
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.18 E-value=2.9e-05 Score=52.45 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=69.4
Q ss_pred eEecCCCchhhhhc---CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhh-hhhCCCCCCc
Q 031686 43 MITYSRETTPLILN---SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIF-DYFGVTCYTS 114 (155)
Q Consensus 43 v~e~~~~~~~~i~~---~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~-~~~gl~~~~~ 114 (155)
|.+++.++++.+.. .+++.++.|.... .-.. ...+.++|+++++. +.|+.+|.+.. ...+. +.+|+. ..
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~-~~~~~~~~~~v~--~~ 79 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE-QREFAKEELQLK--SF 79 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc-chhhHHhhcCCC--cC
Confidence 67889888888763 4566677776553 2344 66789999999874 88999998852 23444 457885 48
Q ss_pred ceEEEEecCCCeeecCCCC-CCHHHHHHHH
Q 031686 115 RVIAVASIRKRKKYVLNGE-LTLSNVKSFA 143 (155)
Q Consensus 115 P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi 143 (155)
|++.+++......+.++|+ .+.++|..||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999887643345566764 7999998885
No 29
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.16 E-value=7.8e-05 Score=53.01 Aligned_cols=103 Identities=9% Similarity=-0.051 Sum_probs=74.3
Q ss_pred CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCC
Q 031686 49 ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKR 125 (155)
Q Consensus 49 ~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~ 125 (155)
..+......++++++.|...- .-.. ...+.++++++.+++.|+.++.+...+..+++.||+.. +|++++++....
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~--iPt~v~~~~~G~ 88 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG--IPHFVFLDREGN 88 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC--CCEEEEECCCCC
Confidence 445566667777776776542 2244 67888899999888888888877533456788899874 899999975433
Q ss_pred eeecCCCCCCHHHHHHHHHHHHcCCCcc
Q 031686 126 KKYVLNGELTLSNVKSFALDFLGDKLRN 153 (155)
Q Consensus 126 ~kY~~~~~~t~~~I~~Fi~~f~~Gkl~p 153 (155)
....+.|..+.+.|.+.++.+++|.=.|
T Consensus 89 ~v~~~~G~~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 89 EEGQSIGLQPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHcCCCCC
Confidence 3444567778999999999999887433
No 30
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.15 E-value=0.00014 Score=50.32 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=69.1
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecCChhH-HHHHHHHHHh-h--cCceEEEEEeCCCc---chhhhhhhhCCCCCCcc
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVHDSEA-KSIFQETARA-F--KGKLLFVYSQIYPK---LKGQIFDYFGVTCYTSR 115 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~~~~~-~~~~~~vA~~-~--~~~i~F~~vd~~~~---~~~~~~~~~gl~~~~~P 115 (155)
+.+++.-|+.++.....-.++=|--.-.+.+ .++|..+|++ . .++++++-|..... ++.++.+.||++.++.|
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fP 85 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFP 85 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-S
T ss_pred eeeccceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCC
Confidence 5678888999988776333444433223444 7899999944 3 35699998877642 47788999999998999
Q ss_pred eEEEEecCCCe--eecCCCCCCHHHHHHHHHH
Q 031686 116 VIAVASIRKRK--KYVLNGELTLSNVKSFALD 145 (155)
Q Consensus 116 ~v~i~~~~~~~--kY~~~~~~t~~~I~~Fi~~ 145 (155)
.+.+....... .|+.++++|.++|++|+.+
T Consensus 86 v~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 86 VIYLFVGDKEEPVRYPFDGDVTADNLQRFVKS 117 (126)
T ss_dssp EEEEEESSTTSEEEE-TCS-S-HHHHHHHHHH
T ss_pred EEEEecCCCCCCccCCccCCccHHHHHHHHHh
Confidence 99988843222 4544678999999999975
No 31
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.13 E-value=3.2e-05 Score=50.96 Aligned_cols=95 Identities=12% Similarity=0.149 Sum_probs=69.7
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTSRV 116 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~ 116 (155)
+.+++.++++.....+ +.++.|...- .-.. ...+.++|+++++ ++.|+.+|.+. ...+.+.|++. .+|+
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~--~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--HRELCSEFQVR--GYPT 76 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--ChhhHhhcCCC--cCCE
Confidence 5678888888887665 4666665442 2244 6679999999987 69999999885 45778888886 4899
Q ss_pred EEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686 117 IAVASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
+.++... .....+.|..+.+.|.+||
T Consensus 77 ~~~~~~g-~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDG-EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCC-CeeeEeeCCCCHHHHHhhC
Confidence 9988642 2344566788899998885
No 32
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.10 E-value=6.8e-05 Score=49.43 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=69.6
Q ss_pred eEecCCCchhhhhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcC--ceEEEEEeCCCcchhhhhhhhCCCCCCcce
Q 031686 43 MITYSRETTPLILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKG--KLLFVYSQIYPKLKGQIFDYFGVTCYTSRV 116 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~--~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~ 116 (155)
|.+++.+++....... .+.++.|.... .... ...+.++|+.+++ .+.|+.+|.+. + .....+++ ...|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~-~~~~~~~~--~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATA--N-DVPSEFVV--DGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcc--h-hhhhhccC--CCCCE
Confidence 6788999998876554 55566666553 2355 7889999998876 58999999885 2 46667777 35899
Q ss_pred EEEEecCC-CeeecCCCCCCHHHHHHHH
Q 031686 117 IAVASIRK-RKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 117 v~i~~~~~-~~kY~~~~~~t~~~I~~Fi 143 (155)
+.++.... ...+.+.|+.+.++|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 99987532 2344567888999999886
No 33
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.10 E-value=6.8e-05 Score=48.96 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=66.0
Q ss_pred CCCchhhhhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686 47 SRETTPLILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI 122 (155)
Q Consensus 47 ~~~~~~~i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~ 122 (155)
+.+++....... .+.++.|.... .... ...+.++++++.+++.|+.+|.+. ...+.+.||+.. .|+++++..
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRS--IPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCc--CCEEEEEeC
Confidence 334455544443 35566666553 2344 677889999998889999999986 567788999974 899998863
Q ss_pred CCCeeecCCCCCCHHHHHHHHHHH
Q 031686 123 RKRKKYVLNGELTLSNVKSFALDF 146 (155)
Q Consensus 123 ~~~~kY~~~~~~t~~~I~~Fi~~f 146 (155)
+.....+.|..+.+.|.+|+++-
T Consensus 78 -g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 -GKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred -CcEeeeecCCCCHHHHHHHHHhh
Confidence 22233445667889999999863
No 34
>PTZ00102 disulphide isomerase; Provisional
Probab=98.09 E-value=0.00015 Score=60.70 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=86.8
Q ss_pred cCHHHHHHHHHhCC-----------------CCCeEecCCCchhhh-hcCCCceEEEEeecC--ChhH-HHHHHHHHHhh
Q 031686 26 FTISVIDDFISLNK-----------------IPPMITYSRETTPLI-LNSPLKLLWLFAAVH--DSEA-KSIFQETARAF 84 (155)
Q Consensus 26 ~~~~~l~~fI~~~~-----------------~P~v~e~~~~~~~~i-~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~ 84 (155)
++.+.|.+|++.-. -..+..++.+++.+. ...++++++.|...- .-.. ...+.++|+.+
T Consensus 325 ~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~ 404 (477)
T PTZ00102 325 DSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKY 404 (477)
T ss_pred CCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 57899999999521 123667788888876 566666776776542 2244 66788999888
Q ss_pred cC--ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686 85 KG--KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGD 149 (155)
Q Consensus 85 ~~--~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G 149 (155)
++ .+.|+++|.+. +....+.+++.. .|++.+++........+.|..+.++|.+||++....
T Consensus 405 ~~~~~v~~~~id~~~--~~~~~~~~~v~~--~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 405 KDNDSIIVAKMNGTA--NETPLEEFSWSA--FPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred ccCCcEEEEEEECCC--CccchhcCCCcc--cCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 75 58899999885 456677788764 899999985322223457889999999999997653
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.07 E-value=8.1e-05 Score=49.13 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=71.4
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhc--CceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFK--GKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI 117 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~--~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v 117 (155)
|.+++.+++......+.+.++.|...- .-.. ...+.++++.+. +.+.|+.+|.+...+..+.+.+|+. ..|++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~--~~Pt~ 79 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVK--GFPTF 79 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCc--cccEE
Confidence 567788888888888776677777653 2344 667788888876 5688888888753366788889986 48999
Q ss_pred EEEecCCCeeecCCCCCCHHHHHHHH
Q 031686 118 AVASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 118 ~i~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
++.... ...+.+.|..+.+.+.+|+
T Consensus 80 ~~~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCC-CeeEEeCCCCCHHHHHhhC
Confidence 888742 2345567788899988875
No 36
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.01 E-value=0.00022 Score=49.20 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=71.5
Q ss_pred eEecCCCchhhhhcCCCceEEEEee--cCChhHHHHHHHHHHhhc---CceEEEEEeCCC---cchhhhhhhhCCCCCCc
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAA--VHDSEAKSIFQETARAFK---GKLLFVYSQIYP---KLKGQIFDYFGVTCYTS 114 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~--~~~~~~~~~~~~vA~~~~---~~i~F~~vd~~~---~~~~~~~~~~gl~~~~~ 114 (155)
+..++.+|+.+........++-|.- +-- .+...++++|.++. +.++++-||.++ ..+..+.+.||++...+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc-~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYG-EKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCC-CChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 5679999999988777555666655 211 11346677776663 359999999953 12567889999986569
Q ss_pred ceEEEEecCC-CeeecCCCC-CCHHHHHHHHHH
Q 031686 115 RVIAVASIRK-RKKYVLNGE-LTLSNVKSFALD 145 (155)
Q Consensus 115 P~v~i~~~~~-~~kY~~~~~-~t~~~I~~Fi~~ 145 (155)
|++.+..... .+.-.++|. .+.++|.+||+.
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 9999888531 122245674 999999999975
No 37
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.95 E-value=7.8e-05 Score=50.19 Aligned_cols=88 Identities=17% Similarity=0.210 Sum_probs=59.1
Q ss_pred CchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecC-----
Q 031686 49 ETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIR----- 123 (155)
Q Consensus 49 ~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~----- 123 (155)
+.++.+.......++.|+...+.+..+.|.++|..+|+++.|.....+ .+.+.+|+ .|.++++.+.
T Consensus 9 ~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~-----~~~~~~~~----~~~ivl~~p~~~~~k 79 (104)
T cd03069 9 AEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDK-----QLLEKYGY----GEGVVLFRPPRLSNK 79 (104)
T ss_pred HHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChH-----HHHHhcCC----CCceEEEechhhhcc
Confidence 445665555545577777654322378999999999999999887554 34566666 3667777431
Q ss_pred -CCeeecCCCCCCHHHHHHHHHH
Q 031686 124 -KRKKYVLNGELTLSNVKSFALD 145 (155)
Q Consensus 124 -~~~kY~~~~~~t~~~I~~Fi~~ 145 (155)
......++|+++.+.|.+||+.
T Consensus 80 ~de~~~~y~g~~~~~~l~~fi~~ 102 (104)
T cd03069 80 FEDSSVKFDGDLDSSKIKKFIRE 102 (104)
T ss_pred cCcccccccCcCCHHHHHHHHHh
Confidence 1112235677899999999975
No 38
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.94 E-value=0.00026 Score=46.78 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=68.8
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA 118 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~ 118 (155)
|.+++.++++++.... .++.|...- .-.. ...+.++|+.+++ .+.|+.+|.+. ...+++.+++. .+|++.
T Consensus 3 v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~--~~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ--EPGLSGRFFVT--ALPTIY 76 (101)
T ss_pred eEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC--CHhHHHHcCCc--ccCEEE
Confidence 6789999999887543 455555442 2234 6678888888765 58999999886 56778888986 489998
Q ss_pred EEecCCCeeecCCCCCCHHHHHHHHH
Q 031686 119 VASIRKRKKYVLNGELTLSNVKSFAL 144 (155)
Q Consensus 119 i~~~~~~~kY~~~~~~t~~~I~~Fi~ 144 (155)
++. .|+...+.|..+.++|.+|++
T Consensus 77 ~~~--~g~~~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAK--DGVFRRYQGPRDKEDLISFIE 100 (101)
T ss_pred EeC--CCCEEEecCCCCHHHHHHHHh
Confidence 874 344445678889999999986
No 39
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.93 E-value=0.00021 Score=48.91 Aligned_cols=91 Identities=16% Similarity=0.092 Sum_probs=68.4
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecC----ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVH----DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI 117 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~----~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v 117 (155)
..++|.+|++...+.+.+.++.|...- +... .-.|.++|++|.+.+.|+.+|.+. +..++..||+.. +|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~s--IPTl 87 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLR--TPAL 87 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCc--CCEE
Confidence 457788888888888777777776542 3455 678999999999999999999997 568899999974 8999
Q ss_pred EEEecCCCe-eecCCCCCCHHHH
Q 031686 118 AVASIRKRK-KYVLNGELTLSNV 139 (155)
Q Consensus 118 ~i~~~~~~~-kY~~~~~~t~~~I 139 (155)
+++.. |+ ...+.|..+.+.+
T Consensus 88 i~fkd--Gk~v~~~~G~~~~~e~ 108 (111)
T cd02965 88 LFFRD--GRYVGVLAGIRDWDEY 108 (111)
T ss_pred EEEEC--CEEEEEEeCccCHHHH
Confidence 99884 33 2234455555544
No 40
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.90 E-value=0.00068 Score=47.76 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=78.7
Q ss_pred HHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecC----ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhh
Q 031686 30 VIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVH----DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQI 103 (155)
Q Consensus 30 ~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~----~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~ 103 (155)
.|.+=+..+..|.|.+ .++......+...+++|.... +... --.+.++|++|.+ ++.|+.+|.+. +..+
T Consensus 9 ~l~~rl~~~g~~~~~~---~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~L 83 (132)
T PRK11509 9 ALWQRMLARGWTPVSE---SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAI 83 (132)
T ss_pred HHHHHHHHcCCCcccc---ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHH
Confidence 4444455567777765 666766655533354444332 2334 5678899999984 59999999997 6889
Q ss_pred hhhhCCCCCCcceEEEEecCCCeee--cCCCCCCHHHHHHHHHHHHcCC
Q 031686 104 FDYFGVTCYTSRVIAVASIRKRKKY--VLNGELTLSNVKSFALDFLGDK 150 (155)
Q Consensus 104 ~~~~gl~~~~~P~v~i~~~~~~~kY--~~~~~~t~~~I~~Fi~~f~~Gk 150 (155)
...||+.. +|+++++.. | ++ .+.|-.+.+.+.++|+.+++--
T Consensus 84 A~~fgV~s--iPTLl~Fkd--G-k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 84 GDRFGVFR--FPATLVFTG--G-NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred HHHcCCcc--CCEEEEEEC--C-EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99999974 899999984 4 33 3456678999999999998754
No 41
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.89 E-value=0.00032 Score=45.85 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=60.0
Q ss_pred CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCee-ecCCCC
Q 031686 58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKK-YVLNGE 133 (155)
Q Consensus 58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~k-Y~~~~~ 133 (155)
+.+.++.|.... .-.. ...+.++++.+.+.+.|+.+|.+. ...+.+.||+.. +|++++++. |+. ..+.|.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~--~Pt~~~~~~--g~~~~~~~g~ 85 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQA--LPTVYLFAA--GQPVDGFQGA 85 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCC--CCEEEEEeC--CEEeeeecCC
Confidence 345566666553 2244 677889999998889999999986 678889999874 899999973 432 235677
Q ss_pred CCHHHHHHHHH
Q 031686 134 LTLSNVKSFAL 144 (155)
Q Consensus 134 ~t~~~I~~Fi~ 144 (155)
.+.+.|.+|++
T Consensus 86 ~~~~~l~~~l~ 96 (96)
T cd02956 86 QPEEQLRQMLD 96 (96)
T ss_pred CCHHHHHHHhC
Confidence 88999998873
No 42
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00026 Score=50.68 Aligned_cols=91 Identities=16% Similarity=0.242 Sum_probs=70.3
Q ss_pred hhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeee
Q 031686 52 PLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKY 128 (155)
Q Consensus 52 ~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY 128 (155)
.++.+++.|+++-|...- .=.. .-.+.+++.++.+++.|+.+|.|+ ..++.+.|+++ .+|++++++. |++-
T Consensus 55 ~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~--avPtvlvfkn--Ge~~ 128 (150)
T KOG0910|consen 55 DKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEIS--AVPTVLVFKN--GEKV 128 (150)
T ss_pred HHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhccee--eeeEEEEEEC--CEEe
Confidence 356778888877776541 2233 568889999999999999999997 67899999997 4899999985 4433
Q ss_pred -cCCCCCCHHHHHHHHHHHHc
Q 031686 129 -VLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 129 -~~~~~~t~~~I~~Fi~~f~~ 148 (155)
.+-|-.+.+.|.++|++|+.
T Consensus 129 d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 129 DRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eeecccCCHHHHHHHHHHHhc
Confidence 33456789999999999874
No 43
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.87 E-value=0.00019 Score=48.00 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=62.1
Q ss_pred Eec-CCCchhhhhc-CCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEe
Q 031686 44 ITY-SRETTPLILN-SPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVAS 121 (155)
Q Consensus 44 ~e~-~~~~~~~i~~-~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~ 121 (155)
.++ +.+.++.+.+ .....++.|+...+.+..+.|.++|..+|+++.|....+. .+...++++ .|.+++..
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~-----~~~~~~~~~---~~~i~l~~ 74 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDS-----KVAKKLGLK---MNEVDFYE 74 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcH-----HHHHHcCCC---CCcEEEeC
Confidence 445 3345666665 4434466676554433378899999999999999876554 345555664 58888886
Q ss_pred cCCCeeecC-CCCCCHHHHHHHHHHH
Q 031686 122 IRKRKKYVL-NGELTLSNVKSFALDF 146 (155)
Q Consensus 122 ~~~~~kY~~-~~~~t~~~I~~Fi~~f 146 (155)
......-.+ +|.++.+.|.+||+.-
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 422222234 5678999999999753
No 44
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.86 E-value=0.00015 Score=47.51 Aligned_cols=87 Identities=15% Similarity=0.146 Sum_probs=58.3
Q ss_pred hhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecC
Q 031686 51 TPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVL 130 (155)
Q Consensus 51 ~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~ 130 (155)
++.+.....+.++.|+...+.+..+.|.++|..+|+.+.|+.+... .+.+.++++ .|.++++.......-.+
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~-----~~~~~~~~~---~~~i~l~~~~~~~~~~y 81 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDK-----EVAKKLKVK---PGSVVLFKPFEEEPVEY 81 (97)
T ss_pred HHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChH-----HHHHHcCCC---CCceEEeCCcccCCccC
Confidence 4545555555577777654322378999999999999999887643 445555554 47788776532222234
Q ss_pred CCCCCHHHHHHHHHH
Q 031686 131 NGELTLSNVKSFALD 145 (155)
Q Consensus 131 ~~~~t~~~I~~Fi~~ 145 (155)
+|.++.++|.+||..
T Consensus 82 ~g~~~~~~l~~fi~~ 96 (97)
T cd02981 82 DGEFTEESLVEFIKD 96 (97)
T ss_pred CCCCCHHHHHHHHHh
Confidence 667889999999974
No 45
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.85 E-value=0.00029 Score=53.98 Aligned_cols=102 Identities=13% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCeEecCCCchhhhhcC-----CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCC
Q 031686 41 PPMITYSRETTPLILNS-----PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCY 112 (155)
Q Consensus 41 P~v~e~~~~~~~~i~~~-----~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~ 112 (155)
..+.++|.+|+++.... ..+.++.|...- .-.. ...+.++|+++++.+.|+.+|.+. +..+.+.||+..
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~--~~~l~~~~~I~~- 106 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATR--ALNLAKRFAIKG- 106 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcc--cHHHHHHcCCCc-
Confidence 45889999999986543 245666676553 2244 667899999999989999999886 578889999974
Q ss_pred CcceEEEEecCCCeeecC-CCCCCHHHHHHHHHHHHc
Q 031686 113 TSRVIAVASIRKRKKYVL-NGELTLSNVKSFALDFLG 148 (155)
Q Consensus 113 ~~P~v~i~~~~~~~kY~~-~~~~t~~~I~~Fi~~f~~ 148 (155)
+|++.+++. |+.+.+ .|+.+.++|.+|+..-..
T Consensus 107 -~PTl~~f~~--G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 107 -YPTLLLFDK--GKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred -CCEEEEEEC--CEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 899999983 444433 467899999999987653
No 46
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.71 E-value=0.0011 Score=45.24 Aligned_cols=97 Identities=8% Similarity=0.052 Sum_probs=67.3
Q ss_pred CeEecCC-CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686 42 PMITYSR-ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI 117 (155)
Q Consensus 42 ~v~e~~~-~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v 117 (155)
.+.+++. +.+.+....+.+.++.|..+. .-.. ...+.++|+++.+ +.|+.+|.+. +..+++.|++.. +|++
T Consensus 5 ~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~~--~~~l~~~~~v~~--vPt~ 79 (113)
T cd02989 5 KYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAEK--APFLVEKLNIKV--LPTV 79 (113)
T ss_pred CeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEccc--CHHHHHHCCCcc--CCEE
Confidence 3555655 566666666666666666553 3345 6788899998864 8999999997 677899999974 8999
Q ss_pred EEEecCCC-eee----cCC--CCCCHHHHHHHH
Q 031686 118 AVASIRKR-KKY----VLN--GELTLSNVKSFA 143 (155)
Q Consensus 118 ~i~~~~~~-~kY----~~~--~~~t~~~I~~Fi 143 (155)
+++..... .++ .+. ++++.++|++|+
T Consensus 80 l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 98874211 011 111 368999999886
No 47
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.69 E-value=0.00076 Score=56.78 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=73.4
Q ss_pred CCeEecCCCchhhhhc---CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686 41 PPMITYSRETTPLILN---SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYT 113 (155)
Q Consensus 41 P~v~e~~~~~~~~i~~---~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~~~~ 113 (155)
+.|.++|.+|++.... .+.+.++.|...- .-.. ...|.++|++++++ +.|+.+|.+........+.|++. .
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~--~ 428 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG--S 428 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC--c
Confidence 4799999999999875 4455566666542 2344 66899999999875 88998988852122223678886 4
Q ss_pred cceEEEEecCCCeeecCC-CCCCHHHHHHHHHHH
Q 031686 114 SRVIAVASIRKRKKYVLN-GELTLSNVKSFALDF 146 (155)
Q Consensus 114 ~P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~f 146 (155)
+|++.++.......-.++ +.-+.++|..||+.+
T Consensus 429 ~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 429 FPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred cceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 899999986432222345 468999999999864
No 48
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.67 E-value=0.00083 Score=44.21 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=59.8
Q ss_pred hhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeec
Q 031686 54 ILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYV 129 (155)
Q Consensus 54 i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~ 129 (155)
.+..+ .++++.|.... .-.. ...+.++++++.+++.|..+|.+. ...+.+.+|+. ..|++.+++. +.....
T Consensus 8 ~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~--~~~l~~~~~v~--~vPt~~i~~~-g~~v~~ 82 (97)
T cd02949 8 LYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE--DQEIAEAAGIM--GTPTVQFFKD-KELVKE 82 (97)
T ss_pred HHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC--CHHHHHHCCCe--eccEEEEEEC-CeEEEE
Confidence 33444 34455555443 2244 677889999998889999999986 56788899986 4899999973 223444
Q ss_pred CCCCCCHHHHHHHHH
Q 031686 130 LNGELTLSNVKSFAL 144 (155)
Q Consensus 130 ~~~~~t~~~I~~Fi~ 144 (155)
+.+..+.+++.+|++
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 566677888888763
No 49
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.67 E-value=0.00035 Score=46.72 Aligned_cols=104 Identities=15% Similarity=0.179 Sum_probs=72.6
Q ss_pred CeEecC-CCchhhhhcCCCceEEEEeecC-ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcce-E
Q 031686 42 PMITYS-RETTPLILNSPLKLLWLFAAVH-DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRV-I 117 (155)
Q Consensus 42 ~v~e~~-~~~~~~i~~~~~~~v~lf~~~~-~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~-v 117 (155)
++..++ ...+.+++.....++++|.... +-+. .+.|+++|+..+|.-+.+|+|-.+.+...+.+.+-+++..-|. +
T Consensus 2 ~ie~i~d~KdfKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 2 LIEDISDHKDFKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred ccccccchHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 333443 3557788888877888887664 4455 8899999999999999999998765578888998887544442 2
Q ss_pred EEEecCCCeee-cCCCCCCHHHHHHHHHH
Q 031686 118 AVASIRKRKKY-VLNGELTLSNVKSFALD 145 (155)
Q Consensus 118 ~i~~~~~~~kY-~~~~~~t~~~I~~Fi~~ 145 (155)
.+.+..+|... .++-.+|..++..|++|
T Consensus 82 ~LkHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 82 ELKHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhhcccCCCccccccchhhHHHHHHHhhC
Confidence 34444444222 23446899999999875
No 50
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.66 E-value=0.00083 Score=44.64 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=62.1
Q ss_pred chhhhhcCCCceEEEEeecC--ChhH-HHHH---HHHHHhhcCceEEEEEeCCCcc--hhhhhhhhCCCCCCcceEEEEe
Q 031686 50 TTPLILNSPLKLLWLFAAVH--DSEA-KSIF---QETARAFKGKLLFVYSQIYPKL--KGQIFDYFGVTCYTSRVIAVAS 121 (155)
Q Consensus 50 ~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~~--~~~~~~~~gl~~~~~P~v~i~~ 121 (155)
.+.+....++++++.|.... .-.. ...+ .++++.+++.+.++.+|.+... ...+++.+|+.. +|++.+++
T Consensus 3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~--~Pti~~~~ 80 (104)
T cd02953 3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFG--PPTYLFYG 80 (104)
T ss_pred HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCC--CCEEEEEC
Confidence 34555666767766666542 1222 2233 4677777778999999976421 456778889864 89999998
Q ss_pred c-CCCeeecCCCCCCHHHHHHHHH
Q 031686 122 I-RKRKKYVLNGELTLSNVKSFAL 144 (155)
Q Consensus 122 ~-~~~~kY~~~~~~t~~~I~~Fi~ 144 (155)
. +....+.+.|..+.++|.++++
T Consensus 81 ~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 81 PGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred CCCCCCCcccccccCHHHHHHHhC
Confidence 6 3333456678889999988863
No 51
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.60 E-value=0.00085 Score=55.52 Aligned_cols=103 Identities=11% Similarity=0.129 Sum_probs=77.1
Q ss_pred CeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCcc
Q 031686 42 PMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTSR 115 (155)
Q Consensus 42 ~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~P 115 (155)
.|.+++.+++........+.++.|...- .... ...+.++|+.+++ ++.|+.+|.+. +.++.+.+|+.+ .|
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~--~P 77 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE--EKDLAQKYGVSG--YP 77 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC--cHHHHHhCCCcc--cc
Confidence 3667888999988887766666676542 2344 5678888887764 38999999986 578889999974 89
Q ss_pred eEEEEecCCCe-eecCCCCCCHHHHHHHHHHHHcC
Q 031686 116 VIAVASIRKRK-KYVLNGELTLSNVKSFALDFLGD 149 (155)
Q Consensus 116 ~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~~f~~G 149 (155)
++.++... .. .+.+.|..+.++|.+|+++....
T Consensus 78 t~~~~~~g-~~~~~~~~g~~~~~~l~~~i~~~~~~ 111 (462)
T TIGR01130 78 TLKIFRNG-EDSVSDYNGPRDADGIVKYMKKQSGP 111 (462)
T ss_pred EEEEEeCC-ccceeEecCCCCHHHHHHHHHHhcCC
Confidence 99988742 22 35667788999999999987654
No 52
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.58 E-value=0.00096 Score=45.20 Aligned_cols=83 Identities=8% Similarity=0.064 Sum_probs=60.7
Q ss_pred CCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe-eecCC
Q 031686 57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK-KYVLN 131 (155)
Q Consensus 57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~-kY~~~ 131 (155)
.++|.++.|...- .-.. ...+.++++++++ ++.|+.+|.+. ...+.+.+|+. ..|++++++. |+ .....
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--~~~l~~~~~V~--~~Pt~~i~~~--g~~~~~~~ 96 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--ERRLARKLGAH--SVPAIVGIIN--GQVTFYHD 96 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--cHHHHHHcCCc--cCCEEEEEEC--CEEEEEec
Confidence 3456666676553 2244 6678899999976 48899999886 46788899996 4899998873 33 23346
Q ss_pred CCCCHHHHHHHHHH
Q 031686 132 GELTLSNVKSFALD 145 (155)
Q Consensus 132 ~~~t~~~I~~Fi~~ 145 (155)
|..+.+.|.+||++
T Consensus 97 G~~~~~~l~~~i~~ 110 (111)
T cd02963 97 SSFTKQHVVDFVRK 110 (111)
T ss_pred CCCCHHHHHHHHhc
Confidence 77899999999975
No 53
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.53 E-value=0.0016 Score=52.61 Aligned_cols=123 Identities=14% Similarity=0.071 Sum_probs=78.5
Q ss_pred EEEeccCCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcC--CCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeC
Q 031686 18 CFIFSDVSFTISVIDDFISLNKIPPMITYSRETTPLILNS--PLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQI 95 (155)
Q Consensus 18 ~~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~--~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~ 95 (155)
-.+.|+|.++++-|..||..---.+|..++.+.-.+.|.. ..+.++.++..++++..+.|.++|..|+..+.|..+-.
T Consensus 123 ~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtfd 202 (383)
T PF01216_consen 123 EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATFD 202 (383)
T ss_dssp EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE-S
T ss_pred cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEec
Confidence 4568999999999999999987788988987554433332 23558888877654558899999999999998887633
Q ss_pred CCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHHHc
Q 031686 96 YPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDFLG 148 (155)
Q Consensus 96 ~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f~~ 148 (155)
+.+++.+|++ +--|-.+.+-..+.-.+++ ..|.+.|.+||++-..
T Consensus 203 -----~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r 248 (383)
T PF01216_consen 203 -----KKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR 248 (383)
T ss_dssp -----HHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S
T ss_pred -----chhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHHhch
Confidence 4678889986 3445555542222222233 5688999999987543
No 54
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.53 E-value=0.002 Score=40.58 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=60.8
Q ss_pred chhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe
Q 031686 50 TTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK 126 (155)
Q Consensus 50 ~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~ 126 (155)
++........+.++.|.... .-.. ...+.+++++ .+++.|+.+|.+. ...+.+.||+.. .|++++.... ..
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~--~P~~~~~~~g-~~ 75 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRS--IPTFLFFKNG-KE 75 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCccc--ccEEEEEECC-EE
Confidence 34455555556666666553 2345 6788888887 6679999999886 467888899864 8999988742 22
Q ss_pred eecCCCCCCHHHHHHHH
Q 031686 127 KYVLNGELTLSNVKSFA 143 (155)
Q Consensus 127 kY~~~~~~t~~~I~~Fi 143 (155)
...+.+..+.+.|.+||
T Consensus 76 ~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 76 VDRVVGADPKEELEEFL 92 (93)
T ss_pred EEEEecCCCHHHHHHHh
Confidence 33345556778888887
No 55
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.51 E-value=0.00085 Score=44.71 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=59.0
Q ss_pred CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC
Q 031686 57 SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE 133 (155)
Q Consensus 57 ~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~ 133 (155)
.+++.++.|...- .-.. ...|.++|+++++ +.|+.+|.+. .+..+.+.||+. .+|++.+++.. ....+.|.
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~--~~PT~~lf~~g--~~~~~~G~ 90 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVV--GFPTILLFNST--PRVRYNGT 90 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCe--ecCEEEEEcCC--ceeEecCC
Confidence 3445566666542 2345 6788999999875 7888898872 156788999986 48999999853 44556788
Q ss_pred CCHHHHHHHH
Q 031686 134 LTLSNVKSFA 143 (155)
Q Consensus 134 ~t~~~I~~Fi 143 (155)
.+.++|.+||
T Consensus 91 ~~~~~l~~f~ 100 (100)
T cd02999 91 RTLDSLAAFY 100 (100)
T ss_pred CCHHHHHhhC
Confidence 8999999985
No 56
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0017 Score=51.45 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=76.5
Q ss_pred CCCeEecCCCchhhhh--cCC-CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCC
Q 031686 40 IPPMITYSRETTPLIL--NSP-LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYT 113 (155)
Q Consensus 40 ~P~v~e~~~~~~~~i~--~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~ 113 (155)
.|.+.++|..|++... ++. .|+++.|..+- ...+ ...+..++.+++|++.++.+|.|. ...+...||+. .
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~--~p~vAaqfgiq--s 97 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA--EPMVAAQFGVQ--S 97 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc--chhHHHHhCcC--c
Confidence 4558888988877532 233 47788887662 4566 888999999999999999999997 57889999997 4
Q ss_pred cceEEEEecCCCeee-cCCCCCCHHHHHHHHHHHHc
Q 031686 114 SRVIAVASIRKRKKY-VLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 114 ~P~v~i~~~~~~~kY-~~~~~~t~~~I~~Fi~~f~~ 148 (155)
+|+++.+. .|+.- -+.|-...+.|++|+..+..
T Consensus 98 IPtV~af~--dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 98 IPTVYAFK--DGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred CCeEEEee--CCcCccccCCCCcHHHHHHHHHHhcC
Confidence 89988765 23211 12344567799999998764
No 57
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.46 E-value=0.0022 Score=43.52 Aligned_cols=96 Identities=11% Similarity=0.109 Sum_probs=65.7
Q ss_pred CCeEecCCCchhhhhcCC---CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686 41 PPMITYSRETTPLILNSP---LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTS 114 (155)
Q Consensus 41 P~v~e~~~~~~~~i~~~~---~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~ 114 (155)
-.+.+++.+++....... .+.++.|.... .-.. ...+.++|+++. ++.|+.+|.+. . .+.+.|++. .+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~--~-~l~~~~~i~--~~ 77 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEK--A-FLVNYLDIK--VL 77 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchh--h-HHHHhcCCC--cC
Confidence 346677777776655443 45666776653 2345 778999999986 48899999985 4 778889986 48
Q ss_pred ceEEEEecCCCeeecC------C-CCCCHHHHHHHH
Q 031686 115 RVIAVASIRKRKKYVL------N-GELTLSNVKSFA 143 (155)
Q Consensus 115 P~v~i~~~~~~~kY~~------~-~~~t~~~I~~Fi 143 (155)
|+++++... .....+ . .+++.+.|++++
T Consensus 78 Pt~~~f~~G-~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 78 PTLLVYKNG-ELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred CEEEEEECC-EEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 999988742 111111 1 257888888775
No 58
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.39 E-value=0.0033 Score=41.76 Aligned_cols=91 Identities=16% Similarity=0.122 Sum_probs=62.5
Q ss_pred CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686 49 ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI 122 (155)
Q Consensus 49 ~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~ 122 (155)
+++..+ ....+.++.|...- .-.. ...+.++|+++++ .+.+..+|.+. +..+.+.+|+.. +|++.+++.
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~--~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRG--YPTIKLLKG 81 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCcc--ccEEEEEcC
Confidence 344543 33334555555442 1234 5578888888853 48888888875 567788899864 899999864
Q ss_pred CCCeeecCCCCCCHHHHHHHHHHH
Q 031686 123 RKRKKYVLNGELTLSNVKSFALDF 146 (155)
Q Consensus 123 ~~~~kY~~~~~~t~~~I~~Fi~~f 146 (155)
+..+.+.|..+.++|.+|++++
T Consensus 82 --~~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 --DLAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --CCceeecCCCCHHHHHHHHHhh
Confidence 3345566788999999999875
No 59
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.32 E-value=0.0021 Score=43.47 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=57.7
Q ss_pred EecC-CCchhhhhcCC-CceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEe
Q 031686 44 ITYS-RETTPLILNSP-LKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVAS 121 (155)
Q Consensus 44 ~e~~-~~~~~~i~~~~-~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~ 121 (155)
.+++ .+.++.+.... ...++.|+...+.+..+.|.++|..+|+++.|.+...+ .+.+.++++ .|.++++.
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~-----~~~~~~~~~---~~~vvl~r 74 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDS-----EIFKSLKVS---PGQLVVFQ 74 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChH-----HHHHhcCCC---CCceEEEC
Confidence 3443 34456555544 44466676554322378899999999999999886554 345666765 46778885
Q ss_pred cCC------CeeecCCCC-CCHHH-HHHHHHH
Q 031686 122 IRK------RKKYVLNGE-LTLSN-VKSFALD 145 (155)
Q Consensus 122 ~~~------~~kY~~~~~-~t~~~-I~~Fi~~ 145 (155)
+.- .....+++. .+.++ |.+|+++
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 421 111223444 56655 9999874
No 60
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.31 E-value=0.0014 Score=47.52 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC-CCHHHHHHHHHHHHc
Q 031686 74 KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFALDFLG 148 (155)
Q Consensus 74 ~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi~~f~~ 148 (155)
.+.|.++|+.+++.+.|+.+... .+.+.+|++. |++++.....++...++++ ++.+.|.+||..-.-
T Consensus 9 ~~~f~~~A~~~~~~~~F~~~~~~-----~~~~~~~~~~---p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 9 FEIFEEAAEKLKGDYQFGVTFNE-----ELAKKYGIKE---PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE-H-----HHHHHCTCSS---SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCcCCcEEEEEcHH-----HHHHHhCCCC---CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 78999999999999999998644 4667788863 9999998743444556765 899999999987543
No 61
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.30 E-value=0.0029 Score=41.14 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=58.8
Q ss_pred CchhhhhcCC--CceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecC
Q 031686 49 ETTPLILNSP--LKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIR 123 (155)
Q Consensus 49 ~~~~~i~~~~--~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~ 123 (155)
+++..+.... .++++.|.... .... ...+.++++++...+.|+.+|.+. ...+.+.||+.. +|++.+++.
T Consensus 3 ~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~--~~~~~~~~~i~~--~Pt~~~~~~- 77 (97)
T cd02984 3 EEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEE--LPEISEKFEITA--VPTFVFFRN- 77 (97)
T ss_pred HHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcccc--CHHHHHhcCCcc--ccEEEEEEC-
Confidence 3455555544 55566666543 2344 678889999877789999999885 567889999864 899999873
Q ss_pred CCee-ecCCCCCCHHHHHHHH
Q 031686 124 KRKK-YVLNGELTLSNVKSFA 143 (155)
Q Consensus 124 ~~~k-Y~~~~~~t~~~I~~Fi 143 (155)
|+. ..+.| .+.+.|.+.|
T Consensus 78 -g~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 78 -GTIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred -CEEEEEEeC-CCHHHHHHhh
Confidence 332 22222 4567776654
No 62
>PLN02309 5'-adenylylsulfate reductase
Probab=97.18 E-value=0.0064 Score=51.23 Aligned_cols=103 Identities=12% Similarity=0.106 Sum_probs=73.0
Q ss_pred CCeEecCCCchhhhhc---CCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhh-hhCCCCC
Q 031686 41 PPMITYSRETTPLILN---SPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFD-YFGVTCY 112 (155)
Q Consensus 41 P~v~e~~~~~~~~i~~---~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~-~~gl~~~ 112 (155)
+.|.+++.+++.++.. .+.+.++.|...- .-.. ...|.++|+++.+. +.|+.+|.+.. ...+.. .|++.
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-~~~la~~~~~I~-- 421 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-QKEFAKQELQLG-- 421 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-chHHHHhhCCCc--
Confidence 5788999999888763 4555566666552 2344 66899999999764 99999998831 345554 68886
Q ss_pred CcceEEEEecCCCeeecCCC-CCCHHHHHHHHHHH
Q 031686 113 TSRVIAVASIRKRKKYVLNG-ELTLSNVKSFALDF 146 (155)
Q Consensus 113 ~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~~f 146 (155)
.+|++.++.......-.+.+ .-+.++|..||+.+
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 48999999753322223443 57899999999875
No 63
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.14 E-value=0.0074 Score=40.09 Aligned_cols=91 Identities=11% Similarity=0.083 Sum_probs=63.5
Q ss_pred CCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686 47 SRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI 122 (155)
Q Consensus 47 ~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~ 122 (155)
|.+++..+.+.+.+.++.|...- .-.. ...|.++++++.++ +.|+.+|.+. ...++.|++.. .|++.++..
T Consensus 6 ~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~---~~~~~~~~v~~--~Pt~~~~~~ 80 (102)
T cd02948 6 NQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT---IDTLKRYRGKC--EPTFLFYKN 80 (102)
T ss_pred CHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC---HHHHHHcCCCc--CcEEEEEEC
Confidence 44566677666766666666542 2345 66888899998854 7899999883 46788999874 799988873
Q ss_pred CCCe-eecCCCCCCHHHHHHHHHH
Q 031686 123 RKRK-KYVLNGELTLSNVKSFALD 145 (155)
Q Consensus 123 ~~~~-kY~~~~~~t~~~I~~Fi~~ 145 (155)
|+ ...+.| .+++.|.++|..
T Consensus 81 --g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 81 --GELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred --CEEEEEEec-CChHHHHHHHhh
Confidence 33 333444 478888888864
No 64
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.12 E-value=0.012 Score=44.49 Aligned_cols=116 Identities=12% Similarity=0.003 Sum_probs=77.4
Q ss_pred eccCCcCHHHHHHHHHhCC--CCCeEecCCCchhhhhcCCCce-EEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEe
Q 031686 21 FSDVSFTISVIDDFISLNK--IPPMITYSRETTPLILNSPLKL-LWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQ 94 (155)
Q Consensus 21 ~y~g~~~~~~l~~fI~~~~--~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd 94 (155)
.|.|..+.+++.+||+... -+.-..+++++.+.+-..+.|. +.+|.... . -.. ...+.+++.++ +++.+..+|
T Consensus 93 ~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~i~~~~vD 171 (215)
T TIGR02187 93 RYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DKILGEMIE 171 (215)
T ss_pred EEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-CceEEEEEe
Confidence 5667677788888887662 2233456666666655556677 55566543 2 234 55677777663 578899999
Q ss_pred CCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686 95 IYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145 (155)
Q Consensus 95 ~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~ 145 (155)
.+. +..+.+.+|+.. .|++++.+. +.. +.|..+.+.+.+|+.+
T Consensus 172 ~~~--~~~~~~~~~V~~--vPtl~i~~~--~~~--~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 172 ANE--NPDLAEKYGVMS--VPKIVINKG--VEE--FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCC--CHHHHHHhCCcc--CCEEEEecC--CEE--EECCCCHHHHHHHHHh
Confidence 886 677888999864 899998652 333 3455677888888764
No 65
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.08 E-value=0.016 Score=42.58 Aligned_cols=101 Identities=10% Similarity=0.110 Sum_probs=70.5
Q ss_pred CCCCCeEecCC-CchhhhhcCCC---ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCC
Q 031686 38 NKIPPMITYSR-ETTPLILNSPL---KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVT 110 (155)
Q Consensus 38 ~~~P~v~e~~~-~~~~~i~~~~~---~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~ 110 (155)
..+-.+.+++. +++........ ++++.|.... .-.. ...|.++|++|. .+.|+.+|.+. . .+.+.|++.
T Consensus 59 ~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~--~-~l~~~f~v~ 134 (175)
T cd02987 59 RRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASA--T-GASDEFDTD 134 (175)
T ss_pred CCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccc--h-hhHHhCCCC
Confidence 34567788887 77777665432 4555555442 2344 678999999985 59999999995 3 677888886
Q ss_pred CCCcceEEEEecCCCe---ee-cC----CCCCCHHHHHHHHHHH
Q 031686 111 CYTSRVIAVASIRKRK---KY-VL----NGELTLSNVKSFALDF 146 (155)
Q Consensus 111 ~~~~P~v~i~~~~~~~---kY-~~----~~~~t~~~I~~Fi~~f 146 (155)
.+|+++++.. |+ .+ .+ ..+++.+.|+.|+..+
T Consensus 135 --~vPTlllyk~--G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 135 --ALPALLVYKG--GELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred --CCCEEEEEEC--CEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 4899999884 32 12 11 1279999999998763
No 66
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.08 E-value=0.011 Score=40.28 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=53.5
Q ss_pred hH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCC-CeeecCCCCCCHHHHHHHHHHHHc
Q 031686 72 EA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRK-RKKYVLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 72 ~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~-~~kY~~~~~~t~~~I~~Fi~~f~~ 148 (155)
.. ...+.++|.++ +++.|..+|.+. ++.+.+.+|+.. .|++.+.+... .....+.|-.+...+.+||+++.+
T Consensus 38 ~~~~~~l~~la~~~-~~i~~~~vd~d~--~~~l~~~~~v~~--vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 38 EVTKQLLEELSELS-DKLKLEIYDFDE--DKEKAEKYGVER--VPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred HHHHHHHHHHHHhc-CceEEEEEeCCc--CHHHHHHcCCCc--CCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHh
Confidence 45 67888888887 679999999986 678889999874 89999987421 111233455678899999998764
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.01 E-value=0.016 Score=39.63 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=61.6
Q ss_pred hhcCC-CceEEEEeecC-C-hhH-HHHH---HHHHHhhcCceEEEEEeCCCc-----------chhhhhhhhCCCCCCcc
Q 031686 54 ILNSP-LKLLWLFAAVH-D-SEA-KSIF---QETARAFKGKLLFVYSQIYPK-----------LKGQIFDYFGVTCYTSR 115 (155)
Q Consensus 54 i~~~~-~~~v~lf~~~~-~-~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~-----------~~~~~~~~~gl~~~~~P 115 (155)
....+ +|+++.|.... . -.. ...+ .++++.+++++.++.+|.+.. ....+...||+.. +|
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~--~P 86 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF--TP 86 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc--cc
Confidence 34455 66666665443 1 122 2222 245555666788888887642 1246678888864 89
Q ss_pred eEEEEecC-CCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686 116 VIAVASIR-KRKKYVLNGELTLSNVKSFALDFLGDK 150 (155)
Q Consensus 116 ~v~i~~~~-~~~kY~~~~~~t~~~I~~Fi~~f~~Gk 150 (155)
++++++.. ......+.|..+.+.+.++++.++++-
T Consensus 87 t~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 87 TVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred EEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhhh
Confidence 99999975 223445667788999999999998873
No 68
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.68 E-value=0.033 Score=37.61 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=49.5
Q ss_pred HHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec-CCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686 79 ETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI-RKRKKYVLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 79 ~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~-~~~~kY~~~~~~t~~~I~~Fi~~f~~ 148 (155)
++.+..+..++++.+|....+...+++.++.. .+|.++++++ +....+.+.|.++++.+.+-++.+..
T Consensus 44 ~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~--~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 44 SVKEFIRENFIFWQCDIDSSEGQRFLQSYKVD--KYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred HHHHHHHhCEEEEEecCCCccHHHHHHHhCcc--CCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 45555555677777888765566778888875 4999999998 43345667788899988887777654
No 69
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.66 E-value=0.034 Score=34.76 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=54.1
Q ss_pred EEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHH
Q 031686 62 LWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSN 138 (155)
Q Consensus 62 v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~ 138 (155)
+.+|.... .-.. ...+.++|++++..+.+..+|.++ .....+.+|+.. .|++.+ + ++ ..+.|..+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~--vPt~~~-~---g~-~~~~G~~~~~~ 73 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME--NPQKAMEYGIMA--VPAIVI-N---GD-VEFIGAPTKEE 73 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc--CHHHHHHcCCcc--CCEEEE-C---CE-EEEecCCCHHH
Confidence 34455442 2345 778888999988889999999876 567778899874 799876 3 32 23456668899
Q ss_pred HHHHHHHH
Q 031686 139 VKSFALDF 146 (155)
Q Consensus 139 I~~Fi~~f 146 (155)
|.++++..
T Consensus 74 l~~~l~~~ 81 (82)
T TIGR00411 74 LVEAIKKR 81 (82)
T ss_pred HHHHHHhh
Confidence 99888764
No 70
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.66 E-value=0.016 Score=39.85 Aligned_cols=61 Identities=5% Similarity=-0.042 Sum_probs=46.9
Q ss_pred CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686 58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI 122 (155)
Q Consensus 58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~ 122 (155)
+.++++-|...- .-.. ...|.++|.++.+.+.|+.+|.+. ++.+.+.+|+.. +|++.++..
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~--iPTf~~fk~ 77 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYD--PPTVMFFFR 77 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCC--CCEEEEEEC
Confidence 334455554432 2345 678999999999889999999997 688999999975 899999884
No 71
>PTZ00051 thioredoxin; Provisional
Probab=96.65 E-value=0.015 Score=37.76 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=53.1
Q ss_pred eEecC-CCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEE
Q 031686 43 MITYS-RETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIA 118 (155)
Q Consensus 43 v~e~~-~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~ 118 (155)
|.+++ .+.+..+.+.+.+.++.|.... .... ...+.++|+++. ++.|+.+|.+. ...+.+.||+.. +|+++
T Consensus 2 v~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~--~~~~~~~~~v~~--~Pt~~ 76 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-KMVFVKVDVDE--LSEVAEKENITS--MPTFK 76 (98)
T ss_pred eEEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-CcEEEEEECcc--hHHHHHHCCCce--eeEEE
Confidence 34444 4566777776666677776553 2344 677888888865 48999999986 578889999964 89998
Q ss_pred EEe
Q 031686 119 VAS 121 (155)
Q Consensus 119 i~~ 121 (155)
++.
T Consensus 77 ~~~ 79 (98)
T PTZ00051 77 VFK 79 (98)
T ss_pred EEe
Confidence 886
No 72
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.56 E-value=0.038 Score=36.72 Aligned_cols=90 Identities=10% Similarity=-0.036 Sum_probs=56.1
Q ss_pred chhhhhcC--CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcc-hhhhhhhhCCCCCCcceEEEEecC
Q 031686 50 TTPLILNS--PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKL-KGQIFDYFGVTCYTSRVIAVASIR 123 (155)
Q Consensus 50 ~~~~i~~~--~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~-~~~~~~~~gl~~~~~P~v~i~~~~ 123 (155)
.+...... ++++++-|...- .-.. ...+.++|+++ +.+.|+.+|.+... ...+++.+++.. +|+++++..
T Consensus 5 ~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~--~Pt~~~~~~- 80 (103)
T cd02985 5 ELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIE--VPHFLFYKD- 80 (103)
T ss_pred HHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCc--CCEEEEEeC-
Confidence 34444443 444566665442 2344 67888999998 67999999988521 236788899874 899888852
Q ss_pred CCe-eecCCCCCCHHHHHHHHHH
Q 031686 124 KRK-KYVLNGELTLSNVKSFALD 145 (155)
Q Consensus 124 ~~~-kY~~~~~~t~~~I~~Fi~~ 145 (155)
|+ ...+.| ..++.|.+-+..
T Consensus 81 -G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 81 -GEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred -CeEEEEEeC-CCHHHHHHHHHh
Confidence 33 233334 456666665543
No 73
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.48 E-value=0.026 Score=40.70 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=57.6
Q ss_pred CeEecCCCchhhhhcCC--CceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCC----
Q 031686 42 PMITYSRETTPLILNSP--LKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTC---- 111 (155)
Q Consensus 42 ~v~e~~~~~~~~i~~~~--~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~---- 111 (155)
.+.+++++++....... .+.++.|.... .-.. ...+.++|+++.+ ++.|+.+|.+. +..+.+.|++..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v 106 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLS 106 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCc
Confidence 56778888888766432 34466666543 2344 6789999999875 59999999986 678889999864
Q ss_pred CCcceEEEEec
Q 031686 112 YTSRVIAVASI 122 (155)
Q Consensus 112 ~~~P~v~i~~~ 122 (155)
..+|+++++..
T Consensus 107 ~~~PT~ilf~~ 117 (152)
T cd02962 107 KQLPTIILFQG 117 (152)
T ss_pred CCCCEEEEEEC
Confidence 34899998874
No 74
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.41 E-value=0.082 Score=39.51 Aligned_cols=102 Identities=13% Similarity=0.079 Sum_probs=68.0
Q ss_pred HhCCCCCeEecCCCchhh-hhcCCC--ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCC
Q 031686 36 SLNKIPPMITYSRETTPL-ILNSPL--KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGV 109 (155)
Q Consensus 36 ~~~~~P~v~e~~~~~~~~-i~~~~~--~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl 109 (155)
++..+..|.+++.+++.. +...+. ++++-|+... .-.. ...|.++|++|. .+.|+.++++. ....|++
T Consensus 77 ~~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i 150 (192)
T cd02988 77 EKSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPD 150 (192)
T ss_pred hhCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCC
Confidence 344577888888877764 333332 4555555442 2345 678999999986 58999999884 2467777
Q ss_pred CCCCcceEEEEecCCC-eee----cCCC-CCCHHHHHHHHHH
Q 031686 110 TCYTSRVIAVASIRKR-KKY----VLNG-ELTLSNVKSFALD 145 (155)
Q Consensus 110 ~~~~~P~v~i~~~~~~-~kY----~~~~-~~t~~~I~~Fi~~ 145 (155)
. .+|+++++....- ..+ .+.| .+|.++|+.++..
T Consensus 151 ~--~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 151 K--NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred C--CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 5 4999999984211 122 1123 6999999998875
No 75
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.36 E-value=0.034 Score=37.76 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=56.0
Q ss_pred CeEecCCCchhhhhcCCC-ceEEEEeecC--ChhH-HHHHHHHHHhhcC---ceEEEEEeCCCcchhhhhhhhCCCCCCc
Q 031686 42 PMITYSRETTPLILNSPL-KLLWLFAAVH--DSEA-KSIFQETARAFKG---KLLFVYSQIYPKLKGQIFDYFGVTCYTS 114 (155)
Q Consensus 42 ~v~e~~~~~~~~i~~~~~-~~v~lf~~~~--~~~~-~~~~~~vA~~~~~---~i~F~~vd~~~~~~~~~~~~~gl~~~~~ 114 (155)
.+.+++.++++....... +.++.|...- .-.. ...|.++|+++++ .+.|+.+|.+...+..+.+.||+. ..
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~--~~ 79 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVT--GY 79 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCC--CC
Confidence 367889889888766654 4466666543 2234 6678889988763 588888886532256678889986 48
Q ss_pred ceEEEEecC
Q 031686 115 RVIAVASIR 123 (155)
Q Consensus 115 P~v~i~~~~ 123 (155)
|++.++...
T Consensus 80 Pt~~lf~~~ 88 (114)
T cd02992 80 PTLRYFPPF 88 (114)
T ss_pred CEEEEECCC
Confidence 999999863
No 76
>smart00594 UAS UAS domain.
Probab=96.20 E-value=0.072 Score=36.61 Aligned_cols=62 Identities=11% Similarity=0.280 Sum_probs=43.9
Q ss_pred HHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe-ee----cCCCCCCHHHHHHHH
Q 031686 80 TARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK-KY----VLNGELTLSNVKSFA 143 (155)
Q Consensus 80 vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~-kY----~~~~~~t~~~I~~Fi 143 (155)
+.+-.+.++++..+|....+..++++.+++. .+|.++++++.+++ .+ ..+|.++++.+..++
T Consensus 55 V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~--~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 55 VKSLIRENFIFWQVDVDTSEGQRVSQFYKLD--SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHHcCEEEEEecCCChhHHHHHHhcCcC--CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 3344444677777887765667788888886 49999999986542 22 345788999888775
No 77
>PHA02278 thioredoxin-like protein
Probab=96.19 E-value=0.067 Score=35.90 Aligned_cols=90 Identities=8% Similarity=0.039 Sum_probs=57.8
Q ss_pred CchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcc--hhhhhhhhCCCCCCcceEEEEecC
Q 031686 49 ETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKL--KGQIFDYFGVTCYTSRVIAVASIR 123 (155)
Q Consensus 49 ~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~--~~~~~~~~gl~~~~~P~v~i~~~~ 123 (155)
+.+.++...+.+.++-|...- .-.. ...+.++|+++..+..|+.+|.+... ...+.+.|++.. +|++++++.
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~--iPT~i~fk~- 81 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS--TPVLIGYKD- 81 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc--ccEEEEEEC-
Confidence 345556666666665565442 2234 56788888876556678888887521 256788999974 899999984
Q ss_pred CCe-eecCCCCCCHHHHHHH
Q 031686 124 KRK-KYVLNGELTLSNVKSF 142 (155)
Q Consensus 124 ~~~-kY~~~~~~t~~~I~~F 142 (155)
|+ .-.+.|..+.+.|.++
T Consensus 82 -G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 82 -GQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred -CEEEEEEeCCCCHHHHHhh
Confidence 32 2244566777777654
No 78
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.12 E-value=0.12 Score=36.79 Aligned_cols=89 Identities=7% Similarity=-0.027 Sum_probs=54.3
Q ss_pred CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC--
Q 031686 58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-- 132 (155)
Q Consensus 58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-- 132 (155)
+.++++=|...- .-.. ...|.++|+++.+...|+.+|.++ ++.+.+.|++.. ..|.+.+.+..........|
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~-~~t~~~ffk~g~~~vd~~tG~~ 99 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYD-PCTVMFFFRNKHIMIDLGTGNN 99 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccC-CCcEEEEEECCeEEEEEecccc
Confidence 334455554432 2234 568999999999889999999997 789999999972 24455466532111122223
Q ss_pred ------CCCHHHHHHHHHHHHcC
Q 031686 133 ------ELTLSNVKSFALDFLGD 149 (155)
Q Consensus 133 ------~~t~~~I~~Fi~~f~~G 149 (155)
..+.+++.+=++.+..|
T Consensus 100 ~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 100 NKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred cccccccCCHHHHHHHHHHHHHH
Confidence 24566655555555443
No 79
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.2 Score=40.07 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=79.9
Q ss_pred HHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce--EEEEeecC--C-----hhH-HHHHHHHHHhhcC--------ceE
Q 031686 28 ISVIDDFISLNKIPPMITYSRETTPLILNSPLKL--LWLFAAVH--D-----SEA-KSIFQETARAFKG--------KLL 89 (155)
Q Consensus 28 ~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~--v~lf~~~~--~-----~~~-~~~~~~vA~~~~~--------~i~ 89 (155)
.+++.+-+.-.+-.-|..++.+++.++...+.+. ++.++... . -.+ .+.|.-+|..++. ++.
T Consensus 27 s~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklF 106 (331)
T KOG2603|consen 27 SNKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLF 106 (331)
T ss_pred HHHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEE
Confidence 3456665553444558899999999988765333 44444432 1 123 6778888887652 689
Q ss_pred EEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeec---CCC---CCCHHHHHHHHHHHHc
Q 031686 90 FVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYV---LNG---ELTLSNVKSFALDFLG 148 (155)
Q Consensus 90 F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~---~~~---~~t~~~I~~Fi~~f~~ 148 (155)
|+.||-++ .++..+.|++. .+|.+.+..+..+.+=. +++ ...+|++.+|+.+.-+
T Consensus 107 F~~Vd~~e--~p~~Fq~l~ln--~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 107 FCMVDYDE--SPQVFQQLNLN--NVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred EEEEeccc--cHHHHHHhccc--CCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 99999996 67889999996 48999999875442211 221 2568999999998643
No 80
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=95.79 E-value=0.032 Score=37.16 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=49.5
Q ss_pred CCCceEEEEeecC-C----hhH-HHHHHHHHHhhcCceEEEEEeCCCcc------------------hhhhhhhhCCCCC
Q 031686 57 SPLKLLWLFAAVH-D----SEA-KSIFQETARAFKGKLLFVYSQIYPKL------------------KGQIFDYFGVTCY 112 (155)
Q Consensus 57 ~~~~~v~lf~~~~-~----~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~------------------~~~~~~~~gl~~~ 112 (155)
.+++.+++|.+.. . ..+ .....++++..++++.++.++.+... ...+++.+|+.+
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g- 82 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG- 82 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc-
Confidence 3456677777654 2 122 23333566666666777777666421 134678889875
Q ss_pred CcceEEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686 113 TSRVIAVASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 113 ~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
.|++++++.+....+.+.|-.+++++.+++
T Consensus 83 -tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 -TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred -cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 799999985433345567778888887764
No 81
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.70 E-value=0.068 Score=42.76 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=76.4
Q ss_pred EeccCCcCHHHHHHHHHhCCCCCeEecCC-CchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCCCc
Q 031686 20 IFSDVSFTISVIDDFISLNKIPPMITYSR-ETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIYPK 98 (155)
Q Consensus 20 ~~y~g~~~~~~l~~fI~~~~~P~v~e~~~-~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~~~ 98 (155)
-.|-|.+..+.|.+||++..--.+.|+.. +..+.+...++..+++.+...++...+.++.||.-.|++..|...-++..
T Consensus 87 rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V~~gD~~ 166 (375)
T KOG0912|consen 87 REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLVGFGDLL 166 (375)
T ss_pred hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEeeccccc
Confidence 36788899999999999997777888864 45666666566667777765443446688999999999999888766631
Q ss_pred chhhhhhhhCCCCCCcceEEEEecCCCee-ecCCCCC-CHHHHHHHHHH
Q 031686 99 LKGQIFDYFGVTCYTSRVIAVASIRKRKK-YVLNGEL-TLSNVKSFALD 145 (155)
Q Consensus 99 ~~~~~~~~~gl~~~~~P~v~i~~~~~~~k-Y~~~~~~-t~~~I~~Fi~~ 145 (155)
.. ......+ +.+.+++.... ..+.|.+ +-+.|.+||++
T Consensus 167 --~~------~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~d 206 (375)
T KOG0912|consen 167 --KP------HEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQD 206 (375)
T ss_pred --cC------CCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHh
Confidence 00 1111122 34455432211 1345554 56888888876
No 82
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=95.61 E-value=0.33 Score=34.71 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeCCCcc--------------------hhhhhhhhCCCCCC
Q 031686 58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQIYPKL--------------------KGQIFDYFGVTCYT 113 (155)
Q Consensus 58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~~~~~--------------------~~~~~~~~gl~~~~ 113 (155)
+++.++.|.... .-.. ...+.++++++.+. +.++.++.+... ...+.+.||+. .
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~--~ 138 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG--P 138 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC--C
Confidence 445566666443 2244 66788888888653 666666554211 23455777775 4
Q ss_pred cceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686 114 SRVIAVASIRKRKKYVLNGELTLSNVKSFALDF 146 (155)
Q Consensus 114 ~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f 146 (155)
.|...+++.+..-.+...|..+.+.+.++++++
T Consensus 139 ~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred cCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 799998986533334456778999999998865
No 83
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.22 E-value=0.28 Score=36.99 Aligned_cols=72 Identities=11% Similarity=0.051 Sum_probs=49.6
Q ss_pred hH-HHHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686 72 EA-KSIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL 147 (155)
Q Consensus 72 ~~-~~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~ 147 (155)
.. ...+.++|+++.+ ++.++-+|.+. ...+.+.+|+.. .|++++++........+.|..+.+.+.+||+.++
T Consensus 38 ~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~V~~--~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 38 KETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYGVER--VPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred HHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcCCCc--cCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 45 6788899998842 24455555554 678899999974 8999998742111123456677888999998884
No 84
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.97 E-value=0.31 Score=39.16 Aligned_cols=117 Identities=9% Similarity=-0.007 Sum_probs=66.8
Q ss_pred EEEeccCCcCHHHHHHHHHhCCCCCeEecCCCchh-hhhcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCC
Q 031686 18 CFIFSDVSFTISVIDDFISLNKIPPMITYSRETTP-LILNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIY 96 (155)
Q Consensus 18 ~~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~~~~~-~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~ 96 (155)
....|.|+++.++|..|......|++.+++....+ .-+.....+.++|+...+..-.++|.++|.+. +..+..-+.
T Consensus 111 ~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~---~~~a~FfSa 187 (468)
T KOG4277|consen 111 HAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEK---FSVARFFSA 187 (468)
T ss_pred eeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhh---eeeeeeecc
Confidence 34578999999999999999999999999873322 12233333444444433222266888888752 333332222
Q ss_pred Ccchhhhh-hhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHH
Q 031686 97 PKLKGQIF-DYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALD 145 (155)
Q Consensus 97 ~~~~~~~~-~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~ 145 (155)
. .+++ ++ .+....|++++.+- +.|....+-..+.|.+||+.
T Consensus 188 s---eeVaPe~--~~~kempaV~VFKD---etf~i~de~dd~dLseWinR 229 (468)
T KOG4277|consen 188 S---EEVAPEE--NDAKEMPAVAVFKD---ETFEIEDEGDDEDLSEWINR 229 (468)
T ss_pred c---cccCCcc--cchhhccceEEEcc---ceeEEEecCchhHHHHHHhH
Confidence 1 0111 11 11124799988873 33433323345667777754
No 85
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.66 E-value=0.52 Score=32.45 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=58.4
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc---------chhhhhhhhCCC
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK---------LKGQIFDYFGVT 110 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~---------~~~~~~~~~gl~ 110 (155)
+.+++.+.+.+....+...++.|.... .=.. ...|.+++++.+ ..+..+|.+.. +...+.+.+++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 455676677777777766555554432 2234 567888888744 45666666531 112444556643
Q ss_pred --CCCcceEEEEecCCCe-eecCCC-CCCHHHHHHHHH
Q 031686 111 --CYTSRVIAVASIRKRK-KYVLNG-ELTLSNVKSFAL 144 (155)
Q Consensus 111 --~~~~P~v~i~~~~~~~-kY~~~~-~~t~~~I~~Fi~ 144 (155)
-...|++++++. |+ .-...| ..+.++|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~--Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITD--GKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeC--CeEEEEEeCCCCCHHHHHHHhh
Confidence 234899998884 32 223344 568999999874
No 86
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=94.42 E-value=0.74 Score=36.22 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=58.0
Q ss_pred CceEEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEeCCCc-------chhhhhhhhCCCCCCcceEEEEecCCCeee
Q 031686 59 LKLLWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQIYPK-------LKGQIFDYFGVTCYTSRVIAVASIRKRKKY 128 (155)
Q Consensus 59 ~~~v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd~~~~-------~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY 128 (155)
.+.++.|.... . -.. ...+.++++++.-.+.++.+|+... ....+.+.||+.. +|++.+++..++...
T Consensus 167 k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~--vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 167 KSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT--VPAVFLADPDPNQFT 244 (271)
T ss_pred CeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc--CCeEEEEECCCCEEE
Confidence 34555555442 1 234 6688899999875666666665421 0134678889864 899999997544444
Q ss_pred cC-CCCCCHHHHHHHHHHHHc
Q 031686 129 VL-NGELTLSNVKSFALDFLG 148 (155)
Q Consensus 129 ~~-~~~~t~~~I~~Fi~~f~~ 148 (155)
.. .|.++.+.|.+.+.....
T Consensus 245 ~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 245 PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEeCCCCHHHHHHHHHHHhc
Confidence 33 367899999999887754
No 87
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.22 E-value=0.78 Score=39.49 Aligned_cols=106 Identities=9% Similarity=0.023 Sum_probs=66.2
Q ss_pred CCCCeEecCCCchhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcC-ceEEEEEeCC-----C------------
Q 031686 39 KIPPMITYSRETTPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKG-KLLFVYSQIY-----P------------ 97 (155)
Q Consensus 39 ~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~-~i~F~~vd~~-----~------------ 97 (155)
.+|.+.-.+.+--....+.++++++-|...- .-.. ...+.+++++++. ++.++.+..+ .
T Consensus 37 ~lP~f~l~D~dG~~v~lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~ 116 (521)
T PRK14018 37 TLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGL 116 (521)
T ss_pred CCCCeEeecCCCceeeccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhC
Confidence 4677766655444444556666766666442 2233 6678888888863 4555544320 0
Q ss_pred ---------cchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHH
Q 031686 98 ---------KLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDF 146 (155)
Q Consensus 98 ---------~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f 146 (155)
.....+.+.||+. .+|+.+|++.+....+.+.|.++.+.|.++|+.-
T Consensus 117 ~y~~~pV~~D~~~~lak~fgV~--giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 117 DYPKLPVLTDNGGTLAQSLNIS--VYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred CCcccceeccccHHHHHHcCCC--CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 0023455677775 4899999987543456667888999999999943
No 88
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=93.87 E-value=0.59 Score=32.26 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhcCceEEEEEeCCCcc-----hhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC-CCHHHHHHHH
Q 031686 74 KSIFQETARAFKGKLLFVYSQIYPKL-----KGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFA 143 (155)
Q Consensus 74 ~~~~~~vA~~~~~~i~F~~vd~~~~~-----~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi 143 (155)
...+.+++.++.+++.|+.+|.+... ...+...+++. ..+|++.+++. +.+- .+++ ++.+.+..|.
T Consensus 47 ~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~-~~iPT~~~~~~--~~~l-~~~~c~~~~~~~~~~ 118 (119)
T cd02952 47 EPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLT-TGVPTLLRWKT--PQRL-VEDECLQADLVEMFF 118 (119)
T ss_pred chhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcc-cCCCEEEEEcC--Ccee-cchhhcCHHHHHHhh
Confidence 56788899999878999999987411 34667778886 45999999963 3222 1223 5667777665
No 89
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=1.2 Score=36.48 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=70.1
Q ss_pred hhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCee
Q 031686 51 TPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKK 127 (155)
Q Consensus 51 ~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~k 127 (155)
.........+.++.|..+- .-.+ ...++++|+.+++.+.++.+|.+. ...+.+.+++.+ +|++.+.... .+.
T Consensus 40 ~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~--~~~~~~~y~i~g--fPtl~~f~~~-~~~ 114 (383)
T KOG0191|consen 40 FDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE--HKDLCEKYGIQG--FPTLKVFRPG-KKP 114 (383)
T ss_pred HHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh--hHHHHHhcCCcc--CcEEEEEcCC-Cce
Confidence 3344455556677776652 2234 678889999999999999999986 678899999975 8999998864 233
Q ss_pred ecCCCCCCHHHHHHHHHHHHcCCC
Q 031686 128 YVLNGELTLSNVKSFALDFLGDKL 151 (155)
Q Consensus 128 Y~~~~~~t~~~I~~Fi~~f~~Gkl 151 (155)
..+.+.-+.+.+..|+...+...+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 115 IDYSGPRNAESLAEFLIKELEPSV 138 (383)
T ss_pred eeccCcccHHHHHHHHHHhhcccc
Confidence 345566788999999888765543
No 90
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=93.41 E-value=1.7 Score=29.70 Aligned_cols=68 Identities=9% Similarity=0.064 Sum_probs=46.5
Q ss_pred HHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe---eecCCCCCCHHHHHHHHHHHHcC
Q 031686 80 TARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK---KYVLNGELTLSNVKSFALDFLGD 149 (155)
Q Consensus 80 vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~---kY~~~~~~t~~~I~~Fi~~f~~G 149 (155)
+.+-....+++.-.|....+..++...++.. .+|.++++.+.+++ .-.+.|.++++++..-++.+.+.
T Consensus 45 v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~--~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 45 VIEYINTRMLFWACSVAKPEGYRVSQALRER--TYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred HHHHHHcCEEEEEEecCChHHHHHHHHhCCC--CCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 3333444576666777765566777888776 59999999764332 22456789999998888877653
No 91
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=92.96 E-value=1.3 Score=30.38 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=45.2
Q ss_pred CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686 58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI 122 (155)
Q Consensus 58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~ 122 (155)
++++++=|...- .-.. ...|.++|+++++...|..+|.++ .+.+.+.+++.. .|+.+++..
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~a--mPtfvffkn 77 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISY--IPSTIFFFN 77 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCcee--CcEEEEEEC
Confidence 334455554432 2344 578999999998779999999997 788999999963 698887763
No 92
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.59 E-value=3.5 Score=33.82 Aligned_cols=130 Identities=10% Similarity=0.045 Sum_probs=82.9
Q ss_pred eEEEeccCCcCHHHHHHHHHhCCCCC--------eEecCCCchhhhhcCC-CceEEEEeecC--ChhH-HHHHHHHHHhh
Q 031686 17 FCFIFSDVSFTISVIDDFISLNKIPP--------MITYSRETTPLILNSP-LKLLWLFAAVH--DSEA-KSIFQETARAF 84 (155)
Q Consensus 17 ~~~~~y~g~~~~~~l~~fI~~~~~P~--------v~e~~~~~~~~i~~~~-~~~v~lf~~~~--~~~~-~~~~~~vA~~~ 84 (155)
.-...|.|..+.+.+..|+....-|. +.+++.+++...-... ...++.|..+. .-.. ...+.++|+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~ 191 (383)
T KOG0191|consen 112 KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLL 191 (383)
T ss_pred CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHh
Confidence 34567888889999999988876554 4445555555433333 23344443332 1233 56788888877
Q ss_pred c--CceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686 85 K--GKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK 150 (155)
Q Consensus 85 ~--~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk 150 (155)
+ ..+....+|.+. .....+.+++. .+|++.+......--+.+++.-+.+.|.+|+++...-.
T Consensus 192 ~~~~~v~~~~~d~~~--~~~~~~~~~v~--~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 192 KSKENVELGKIDATV--HKSLASRLEVR--GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred ccCcceEEEeeccch--HHHHhhhhccc--CCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 5 457777777664 45667788886 48999877753220122344568999999999886553
No 93
>PF13728 TraF: F plasmid transfer operon protein
Probab=91.98 E-value=1.9 Score=32.73 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=53.3
Q ss_pred EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCc-------chhhhhhhhCCCCCCcceEEEEecCCCeeecCC
Q 031686 62 LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPK-------LKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN 131 (155)
Q Consensus 62 v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~-------~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~ 131 (155)
+++|+... .+ .. ...++.+|++|.=.+..+.+|+... ....+.+.||+. ..|++.+++..++..+++.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~--~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVK--VTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCC--cCCEEEEEECCCCeEEEEe
Confidence 56666554 22 34 6788889999865677777775310 024567789986 5899999998765566655
Q ss_pred -CCCCHHHHHH
Q 031686 132 -GELTLSNVKS 141 (155)
Q Consensus 132 -~~~t~~~I~~ 141 (155)
|-++.++|.+
T Consensus 202 ~G~~s~~~L~~ 212 (215)
T PF13728_consen 202 QGFMSLDELED 212 (215)
T ss_pred eecCCHHHHHH
Confidence 6788888764
No 94
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=91.45 E-value=2.7 Score=36.55 Aligned_cols=67 Identities=6% Similarity=0.101 Sum_probs=48.3
Q ss_pred HHHHHhhcCceEEEEEeCCCc--chhhhhhhhCCCCCCcceEEEEecCCCe--eecCCCCCCHHHHHHHHHHHH
Q 031686 78 QETARAFKGKLLFVYSQIYPK--LKGQIFDYFGVTCYTSRVIAVASIRKRK--KYVLNGELTLSNVKSFALDFL 147 (155)
Q Consensus 78 ~~vA~~~~~~i~F~~vd~~~~--~~~~~~~~~gl~~~~~P~v~i~~~~~~~--kY~~~~~~t~~~I~~Fi~~f~ 147 (155)
.+++++++ ++.++.+|.+.. ....+++.||+.. .|++++++.+... .+...|..+++++.+++++..
T Consensus 500 ~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~~v~g--~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 500 PQVQQALA-DTVLLQADVTANNAEDVALLKHYNVLG--LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred HHHHHHhc-CCEEEEEECCCCChhhHHHHHHcCCCC--CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 35566665 588888887642 2457788899875 8999999864332 255667889999999998754
No 95
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=90.85 E-value=3.8 Score=32.08 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=55.0
Q ss_pred EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCc-c------hhhhhhhhCCCCCCcceEEEEecCCCeeecCC
Q 031686 62 LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPK-L------KGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN 131 (155)
Q Consensus 62 v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~-~------~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~ 131 (155)
+++|+... .. .+ .-.++..|++|.=.+..+.+|+... . ...+++.||++ ..|++.+++..++..+++.
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVK--YFPALYLVNPKSQKMSPLA 231 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCc--cCceEEEEECCCCcEEEEe
Confidence 55555543 22 33 6677888888876777888887631 0 12356788885 4899999998766666665
Q ss_pred -CCCCHHHHHHHHHHH
Q 031686 132 -GELTLSNVKSFALDF 146 (155)
Q Consensus 132 -~~~t~~~I~~Fi~~f 146 (155)
|-+|.++|.+=|..+
T Consensus 232 ~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 232 YGFISQDELKERILNV 247 (256)
T ss_pred eccCCHHHHHHHHHHH
Confidence 678888775544433
No 96
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=2 Score=28.90 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=51.8
Q ss_pred ceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCC-eeecCCCCCC
Q 031686 60 KLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKR-KKYVLNGELT 135 (155)
Q Consensus 60 ~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~-~kY~~~~~~t 135 (155)
++++-|+..- .-.. .-.+.++|.+|.+ +.|+.+|.++ ...+++.+++.. .|++.++..... .++. .-+
T Consensus 23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~--~PTf~f~k~g~~~~~~v---Ga~ 94 (106)
T KOG0907|consen 23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKA--MPTFVFYKGGEEVDEVV---GAN 94 (106)
T ss_pred eEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceE--eeEEEEEECCEEEEEEe---cCC
Confidence 3355454331 2244 6689999999998 9999999997 678889999874 899999874211 1221 124
Q ss_pred HHHHHHHHHH
Q 031686 136 LSNVKSFALD 145 (155)
Q Consensus 136 ~~~I~~Fi~~ 145 (155)
++.+++.+..
T Consensus 95 ~~~l~~~i~~ 104 (106)
T KOG0907|consen 95 KAELEKKIAK 104 (106)
T ss_pred HHHHHHHHHh
Confidence 5566665544
No 97
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=90.15 E-value=6.1 Score=31.05 Aligned_cols=102 Identities=12% Similarity=0.114 Sum_probs=55.1
Q ss_pred CCCCeEecCC-CchhhhhcCCCc---eEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCC
Q 031686 39 KIPPMITYSR-ETTPLILNSPLK---LLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTC 111 (155)
Q Consensus 39 ~~P~v~e~~~-~~~~~i~~~~~~---~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~ 111 (155)
++--|.+++. +.+-.......+ +|+.|+..+ .... .+.|..+|++|.. +.|+-+.+.. . .+...|..
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~~--~-~~~~~f~~-- 196 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRASK--C-PASENFPD-- 196 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEECG--C-CTTTTS-T--
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehhc--c-CcccCCcc--
Confidence 3556677754 444444443222 344455443 2456 7889999999875 8899887764 1 24444544
Q ss_pred CCcceEEEEecCCC-eee-cC----CCCCCHHHHHHHHHHH
Q 031686 112 YTSRVIAVASIRKR-KKY-VL----NGELTLSNVKSFALDF 146 (155)
Q Consensus 112 ~~~P~v~i~~~~~~-~kY-~~----~~~~t~~~I~~Fi~~f 146 (155)
..+|++.++....- ..+ .+ ..+++.++|+.|+..+
T Consensus 197 ~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 197 KNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp TC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred cCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 45999999984210 123 12 1279999999999853
No 98
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.15 E-value=4.5 Score=27.69 Aligned_cols=85 Identities=9% Similarity=0.031 Sum_probs=51.2
Q ss_pred CceEEEEeecC-C--hhH-HHHHHHHHHhhcC-ce-EEEEEeCCCcchh-----------hhhhhhCCCCCCcceEEEEe
Q 031686 59 LKLLWLFAAVH-D--SEA-KSIFQETARAFKG-KL-LFVYSQIYPKLKG-----------QIFDYFGVTCYTSRVIAVAS 121 (155)
Q Consensus 59 ~~~v~lf~~~~-~--~~~-~~~~~~vA~~~~~-~i-~F~~vd~~~~~~~-----------~~~~~~gl~~~~~P~v~i~~ 121 (155)
.+++++|++.. + +.. .+.+.+....+.. ++ +|+.++... .. .+.+.|++++.. -.++++.
T Consensus 10 ~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~--~~~~~~~~~~~~~~lr~~l~~~~~~-f~~vLiG 86 (118)
T PF13778_consen 10 NRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGA--RSPGKPLSPEDIQALRKRLRIPPGG-FTVVLIG 86 (118)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCcc--ccccCcCCHHHHHHHHHHhCCCCCc-eEEEEEe
Confidence 45677787654 3 233 5555553334432 34 444444432 23 667888888654 5566667
Q ss_pred cCCCeeecCCCCCCHHHHHHHHHHH
Q 031686 122 IRKRKKYVLNGELTLSNVKSFALDF 146 (155)
Q Consensus 122 ~~~~~kY~~~~~~t~~~I~~Fi~~f 146 (155)
.+.+.|-..++.++.+.|.+.|...
T Consensus 87 KDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 87 KDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred CCCcEEEecCCCCCHHHHHHHHhCC
Confidence 6666666666778999998888653
No 99
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=90.11 E-value=2.6 Score=29.14 Aligned_cols=97 Identities=6% Similarity=-0.029 Sum_probs=55.4
Q ss_pred CCCchhhhhcCCCceEEEEeecC--ChhH--HHHHH--HHHHhhcCceEEEEEeCCCcchhhhhh--------hhCCCCC
Q 031686 47 SRETTPLILNSPLKLLWLFAAVH--DSEA--KSIFQ--ETARAFKGKLLFVYSQIYPKLKGQIFD--------YFGVTCY 112 (155)
Q Consensus 47 ~~~~~~~i~~~~~~~v~lf~~~~--~~~~--~~~~~--~vA~~~~~~i~F~~vd~~~~~~~~~~~--------~~gl~~~ 112 (155)
+++.+...-+.++|+++.|...- .=.. ...|. ++++....+++++.+|.+. ...+.+ .+|..
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~--~~~~~~~~~~~~~~~~~~~-- 79 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE--RPDVDKIYMNAAQAMTGQG-- 79 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc--CcHHHHHHHHHHHHhcCCC--
Confidence 34455555666766655554321 1111 22233 4666655678999999875 222222 24554
Q ss_pred CcceEEEEecCCCeee-----cCCCCCCHHHHHHHHHHHH
Q 031686 113 TSRVIAVASIRKRKKY-----VLNGELTLSNVKSFALDFL 147 (155)
Q Consensus 113 ~~P~v~i~~~~~~~kY-----~~~~~~t~~~I~~Fi~~f~ 147 (155)
..|++++++.+....| +...+++...+.++++.+.
T Consensus 80 G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 80 GWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred CCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 4899999998643333 2223577777888877764
No 100
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=90.01 E-value=4.8 Score=31.37 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=57.8
Q ss_pred EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCc-c------hhhhhhhhCCCCCCcceEEEEecCCCeeecCC
Q 031686 62 LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPK-L------KGQIFDYFGVTCYTSRVIAVASIRKRKKYVLN 131 (155)
Q Consensus 62 v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~-~------~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~ 131 (155)
+++|+... .+ .+ .-.++..|++|.=.+..+.+|+... . .....+.+|++ ..|++.+++..+++.+++.
T Consensus 147 L~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~--~~PAl~Lv~~~t~~~~pv~ 224 (248)
T PRK13703 147 LMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVK--YFPALMLVDPKSGSVRPLS 224 (248)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCc--ccceEEEEECCCCcEEEEe
Confidence 55555443 22 33 6678888888877788888887421 1 12244677875 4899999998766666665
Q ss_pred -CCCCHHHHHHHHHHHHcCC
Q 031686 132 -GELTLSNVKSFALDFLGDK 150 (155)
Q Consensus 132 -~~~t~~~I~~Fi~~f~~Gk 150 (155)
|-++.++|.+=|..+..|.
T Consensus 225 ~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 225 YGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred eccCCHHHHHHHHHHHHhcc
Confidence 7789988876666555553
No 101
>PTZ00062 glutaredoxin; Provisional
Probab=88.72 E-value=6.6 Score=29.65 Aligned_cols=59 Identities=10% Similarity=0.055 Sum_probs=39.3
Q ss_pred hhhhhcCCCce-EEEEeec--CChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686 51 TPLILNSPLKL-LWLFAAV--HDSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI 122 (155)
Q Consensus 51 ~~~i~~~~~~~-v~lf~~~--~~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~ 122 (155)
+.++.+++... ++.|... .+-.. ...+.++|++|. ++.|+.+|.+ +++. ..|+++++..
T Consensus 9 ~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d----------~~V~--~vPtfv~~~~ 71 (204)
T PTZ00062 9 KDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA----------DANN--EYGVFEFYQN 71 (204)
T ss_pred HHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc----------cCcc--cceEEEEEEC
Confidence 34444433233 5455333 24566 889999999985 5999999876 5565 4899998874
No 102
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=88.54 E-value=3.7 Score=26.51 Aligned_cols=59 Identities=5% Similarity=-0.104 Sum_probs=43.0
Q ss_pred cCCCce-EEEEeecC-C-hhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686 56 NSPLKL-LWLFAAVH-D-SEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAV 119 (155)
Q Consensus 56 ~~~~~~-v~lf~~~~-~-~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i 119 (155)
+-..|+ +.+|.... . =.. .+.+.++++.+ +++.|..+|.++ +....+.+|+.. .|++++
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~~--~~e~a~~~~V~~--vPt~vi 71 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGAL--FQDEVEERGIMS--VPAIFL 71 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhHh--CHHHHHHcCCcc--CCEEEE
Confidence 345566 77777653 2 245 67788888775 369999999886 567889999864 899975
No 103
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=88.15 E-value=3.2 Score=30.02 Aligned_cols=44 Identities=14% Similarity=-0.084 Sum_probs=30.9
Q ss_pred hhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686 103 IFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 103 ~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~ 148 (155)
+.+.||+. ..|...+++.+..-.|...|.++.+.+.+.++.++.
T Consensus 129 ~~~~~~v~--~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 129 LGLDLGVY--GAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred hHHhcCCe--eCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 33445553 369888888653346666678899999999998873
No 104
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=87.86 E-value=5.2 Score=25.46 Aligned_cols=64 Identities=16% Similarity=0.125 Sum_probs=37.1
Q ss_pred CCceEEEEeecC--ChhH-HHHHHHHHHhhc-CceEEEEEeCCCc--c-------------------hhhhhhhhCCCCC
Q 031686 58 PLKLLWLFAAVH--DSEA-KSIFQETARAFK-GKLLFVYSQIYPK--L-------------------KGQIFDYFGVTCY 112 (155)
Q Consensus 58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~-~~i~F~~vd~~~~--~-------------------~~~~~~~~gl~~~ 112 (155)
+++.++.|.... .-.. ...+.++.+++. .++.++.++.+.. + ...+.+.||+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVR-- 96 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcC--
Confidence 344555555432 1233 567777777775 3466777666641 0 13455666765
Q ss_pred CcceEEEEecC
Q 031686 113 TSRVIAVASIR 123 (155)
Q Consensus 113 ~~P~v~i~~~~ 123 (155)
..|.+.|++.+
T Consensus 97 ~~P~~~l~d~~ 107 (116)
T cd02966 97 GLPTTFLIDRD 107 (116)
T ss_pred ccceEEEECCC
Confidence 47888888764
No 105
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=87.08 E-value=4.5 Score=23.96 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEE
Q 031686 74 KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVA 120 (155)
Q Consensus 74 ~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~ 120 (155)
...+.+++..+ +++.|..+|.+. ...+.+.+|+. ..|++.+-
T Consensus 18 ~~~l~~l~~~~-~~i~~~~id~~~--~~~l~~~~~i~--~vPti~i~ 59 (67)
T cd02973 18 VQAANRIAALN-PNISAEMIDAAE--FPDLADEYGVM--SVPAIVIN 59 (67)
T ss_pred HHHHHHHHHhC-CceEEEEEEccc--CHhHHHHcCCc--ccCEEEEC
Confidence 56677777653 468999999885 46778889985 38998763
No 106
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=86.93 E-value=3.2 Score=30.43 Aligned_cols=43 Identities=14% Similarity=0.009 Sum_probs=30.6
Q ss_pred hhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCC
Q 031686 106 YFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDK 150 (155)
Q Consensus 106 ~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gk 150 (155)
.||+. ..|...+++.+..-.|...|+++.+.+++.++..+...
T Consensus 137 ~~gv~--~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 137 DLGVY--GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred hcCCC--cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 34443 37988888865333566667889999999999887653
No 107
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=84.26 E-value=9.8 Score=25.25 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.6
Q ss_pred hhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHH
Q 031686 101 GQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKS 141 (155)
Q Consensus 101 ~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~ 141 (155)
..+.+.|++.. .|++.+++... ..|...|-.+++.|.+
T Consensus 83 ~~~~~~~~i~~--~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSV--TPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCc--ccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 35677888864 89999999753 5666667778887753
No 108
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=82.64 E-value=9.1 Score=25.91 Aligned_cols=76 Identities=17% Similarity=0.175 Sum_probs=49.6
Q ss_pred eEecCCCchhhhhcCCCceEEEEeecC----ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceE
Q 031686 43 MITYSRETTPLILNSPLKLLWLFAAVH----DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVI 117 (155)
Q Consensus 43 v~e~~~~~~~~i~~~~~~~v~lf~~~~----~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v 117 (155)
..+++.+++......+...+++|.... +... .-.+=|+.+.+.+.+...++..+. ...+...||+.. .|++
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~--e~~L~~r~gv~~--~PaL 86 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAA--ERALAARFGVRR--WPAL 86 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHH--HHHHHHHHT-TS--SSEE
T ss_pred CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchh--HHHHHHHhCCcc--CCeE
Confidence 345567778887777544455554432 2223 446678899999988888887443 457778999864 8999
Q ss_pred EEEec
Q 031686 118 AVASI 122 (155)
Q Consensus 118 ~i~~~ 122 (155)
++...
T Consensus 87 vf~R~ 91 (107)
T PF07449_consen 87 VFFRD 91 (107)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 98873
No 109
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=82.23 E-value=8.5 Score=26.07 Aligned_cols=71 Identities=15% Similarity=0.021 Sum_probs=37.4
Q ss_pred hhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecC
Q 031686 52 PLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIR 123 (155)
Q Consensus 52 ~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~ 123 (155)
+.....++|+++.|...- .-.. ...+.+.+........|+.++.+.. .....+.+++.+..+|++++++.+
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC-CCchhhhcccCCCccceEEEECCC
Confidence 333445566666565431 1123 3445555443333334555555532 123345677765459999999864
No 110
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=81.71 E-value=11 Score=23.86 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=11.4
Q ss_pred HHHHHHHHHhhc--CceEEEEEeCC
Q 031686 74 KSIFQETARAFK--GKLLFVYSQIY 96 (155)
Q Consensus 74 ~~~~~~vA~~~~--~~i~F~~vd~~ 96 (155)
...+.++.++++ +++.|+.+..+
T Consensus 20 ~~~l~~l~~~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 20 LPKLKELYKKYKKKDDVEFVFVSLD 44 (95)
T ss_dssp HHHHHHHHHHHTTTTTEEEEEEE-S
T ss_pred HHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 445555555555 44555544444
No 111
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=78.50 E-value=1.7 Score=28.85 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=17.4
Q ss_pred EeccCCcCHHHHHHHHHhCC
Q 031686 20 IFSDVSFTISVIDDFISLNK 39 (155)
Q Consensus 20 ~~y~g~~~~~~l~~fI~~~~ 39 (155)
+.|+|+++.++|.+||+.++
T Consensus 85 ~~y~g~~~~~~l~~fi~~~~ 104 (104)
T cd03069 85 VKFDGDLDSSKIKKFIRENI 104 (104)
T ss_pred ccccCcCCHHHHHHHHHhhC
Confidence 56899999999999998763
No 112
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=76.52 E-value=15 Score=22.65 Aligned_cols=60 Identities=13% Similarity=0.103 Sum_probs=39.2
Q ss_pred hH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCC-CCHHHHHHHH
Q 031686 72 EA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGE-LTLSNVKSFA 143 (155)
Q Consensus 72 ~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi 143 (155)
.. ...+.++++++..++.|+.+|.. .. +..+|+. ..|++++ + |+.- +.|. .+.+.|.+++
T Consensus 14 ~~~~~~~~~~~~e~~~~~~~~~v~~~----~~-a~~~~v~--~vPti~i-~---G~~~-~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 14 QMTEKNVKKAVEELGIDAEFEKVTDM----NE-ILEAGVT--ATPGVAV-D---GELV-IMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeCCH----HH-HHHcCCC--cCCEEEE-C---CEEE-EEeccCCHHHHHHHh
Confidence 44 67889999998888888888732 22 4556775 4899988 3 3222 3342 3557777765
No 113
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=76.29 E-value=8.7 Score=25.81 Aligned_cols=36 Identities=17% Similarity=-0.029 Sum_probs=22.7
Q ss_pred hhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHH
Q 031686 102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNV 139 (155)
Q Consensus 102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I 139 (155)
.+.+.||+. .+|+..+++.+..-.+...|.++.+.|
T Consensus 91 ~~~~~~~v~--~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 91 RVGIDLGVY--GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred hHHHhcCCC--CCCeEEEECCCceEEEEEeccCChHhc
Confidence 556667775 379888888653335555666666543
No 114
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=75.09 E-value=27 Score=24.83 Aligned_cols=49 Identities=10% Similarity=0.106 Sum_probs=32.2
Q ss_pred hhhhhCCCCCCcceEEEEecCCCeeec--CC-------CCCCHHHHHHHHHHHHcCCCcc
Q 031686 103 IFDYFGVTCYTSRVIAVASIRKRKKYV--LN-------GELTLSNVKSFALDFLGDKLRN 153 (155)
Q Consensus 103 ~~~~~gl~~~~~P~v~i~~~~~~~kY~--~~-------~~~t~~~I~~Fi~~f~~Gkl~p 153 (155)
+.+.||+. ..|.+.|++.+..-.|. ++ ...+.+.+.+-|+..++|+=.+
T Consensus 101 ~~~~~~v~--~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 101 VAKAYGAA--CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred HHHHcCCC--cCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 34455654 36999999875333442 22 1357788999999999987544
No 115
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=74.21 E-value=18 Score=22.30 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCC-CCCHHHHHHHHH
Q 031686 74 KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNG-ELTLSNVKSFAL 144 (155)
Q Consensus 74 ~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~-~~t~~~I~~Fi~ 144 (155)
.+.+++++.++. +..-..+... ++++ +.+|+.. .|+++| | |+ -.+.| -.+.+.|+++++
T Consensus 17 ~~~~~~~~~~~~--i~~ei~~~~~--~~~~-~~ygv~~--vPalvI-n---g~-~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 17 VQLLKEAAEELG--IEVEIIDIED--FEEI-EKYGVMS--VPALVI-N---GK-VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHHHHHHHHHTT--EEEEEEETTT--HHHH-HHTT-SS--SSEEEE-T---TE-EEEESS--HHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CeEEEEEccC--HHHH-HHcCCCC--CCEEEE-C---CE-EEEEecCCCHHHHHHHhC
Confidence 677788888873 7677777753 5666 8889864 899965 4 32 22345 467888888874
No 116
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=74.15 E-value=29 Score=24.78 Aligned_cols=86 Identities=12% Similarity=0.126 Sum_probs=50.7
Q ss_pred eEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEEeCCCc-ch-------hhhh-hhhCC-CCCCcceEEEEecCCCee
Q 031686 61 LLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYSQIYPK-LK-------GQIF-DYFGV-TCYTSRVIAVASIRKRKK 127 (155)
Q Consensus 61 ~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~-~~-------~~~~-~~~gl-~~~~~P~v~i~~~~~~~k 127 (155)
.++.|...- .-.. ...+.+++++++-.+..+.+|.... .+ .... .+++. ....+|+..++|.+++..
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i 132 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKA 132 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEE
Confidence 355565442 1233 6678888888865555555554310 01 1222 34421 123589999999865533
Q ss_pred e-cCCCCCCHHHHHHHHHHH
Q 031686 128 Y-VLNGELTLSNVKSFALDF 146 (155)
Q Consensus 128 Y-~~~~~~t~~~I~~Fi~~f 146 (155)
+ ...|.++.+.+++.+...
T Consensus 133 ~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 133 YPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEeecccCHHHHHHHHHHh
Confidence 4 456789999998888765
No 117
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=73.44 E-value=38 Score=31.92 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=55.0
Q ss_pred CCceEEEEeecC--ChhH-HHHHHHHHHhhcCc-eEEEEEeC---CC--c--------------------chhhhhhhhC
Q 031686 58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGK-LLFVYSQI---YP--K--------------------LKGQIFDYFG 108 (155)
Q Consensus 58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~-i~F~~vd~---~~--~--------------------~~~~~~~~~g 108 (155)
++++++-|.-.- .-.. ...|.+++++|+++ +.++.+.. +. . ....+++.||
T Consensus 420 GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~ 499 (1057)
T PLN02919 420 GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRELG 499 (1057)
T ss_pred CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhcC
Confidence 445555555431 2234 66788889998765 66666531 11 0 0123445566
Q ss_pred CCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686 109 VTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 109 l~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~ 148 (155)
+. .+|..++++.+....+.+.|+...+.|.++++..+.
T Consensus 500 V~--~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 500 VS--SWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred CC--ccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 64 489999998754334456677888899988888653
No 118
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=72.23 E-value=18 Score=24.40 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=47.3
Q ss_pred CchhhhhcCC-CceEEEEeecCC---hhH-HHHHHHHHHhhcCceEEEEEeCCCcc--hhhhhhhhCCCCCCcceEEEEe
Q 031686 49 ETTPLILNSP-LKLLWLFAAVHD---SEA-KSIFQETARAFKGKLLFVYSQIYPKL--KGQIFDYFGVTCYTSRVIAVAS 121 (155)
Q Consensus 49 ~~~~~i~~~~-~~~v~lf~~~~~---~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~--~~~~~~~~gl~~~~~P~v~i~~ 121 (155)
+.++.+.+.. .+++++|=.... +.. .+.|...+....+++.+.++|.-+.+ ...+.+.||+.= +-|++.++.
T Consensus 8 eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~H-eSPQ~ili~ 86 (105)
T PF11009_consen 8 EQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKH-ESPQVILIK 86 (105)
T ss_dssp HHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEEEEE
T ss_pred HHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCc-CCCcEEEEE
Confidence 3445555542 233555543331 444 67777777776666888888876532 556778999974 479999887
Q ss_pred cCCCeeecCC-CCCCHHHHH
Q 031686 122 IRKRKKYVLN-GELTLSNVK 140 (155)
Q Consensus 122 ~~~~~kY~~~-~~~t~~~I~ 140 (155)
.. .-.|.-+ ..||.++|+
T Consensus 87 ~g-~~v~~aSH~~It~~~lk 105 (105)
T PF11009_consen 87 NG-KVVWHASHWDITAEALK 105 (105)
T ss_dssp TT-EEEEEEEGGG-SHHHH-
T ss_pred CC-EEEEECccccCCHHhcC
Confidence 42 1244322 368888764
No 119
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=72.01 E-value=3.2 Score=26.58 Aligned_cols=19 Identities=32% Similarity=0.324 Sum_probs=16.5
Q ss_pred EeccCCcCHHHHHHHHHhC
Q 031686 20 IFSDVSFTISVIDDFISLN 38 (155)
Q Consensus 20 ~~y~g~~~~~~l~~fI~~~ 38 (155)
+.|+|+++.++|.+||..+
T Consensus 79 ~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 79 VEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred ccCCCCCCHHHHHHHHHhC
Confidence 5689999999999999864
No 120
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=70.84 E-value=29 Score=23.33 Aligned_cols=20 Identities=5% Similarity=0.125 Sum_probs=14.4
Q ss_pred hhhhhhCCCCCCcceEEEEecC
Q 031686 102 QIFDYFGVTCYTSRVIAVASIR 123 (155)
Q Consensus 102 ~~~~~~gl~~~~~P~v~i~~~~ 123 (155)
.+.+.||+. .+|++.+++.+
T Consensus 90 ~~~~~~~v~--~~P~~~lid~~ 109 (131)
T cd03009 90 RLNRTFKIE--GIPTLIILDAD 109 (131)
T ss_pred HHHHHcCCC--CCCEEEEECCC
Confidence 345667775 48999999864
No 121
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=69.33 E-value=27 Score=30.23 Aligned_cols=103 Identities=11% Similarity=0.002 Sum_probs=68.8
Q ss_pred HHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhh
Q 031686 30 VIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFD 105 (155)
Q Consensus 30 ~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~ 105 (155)
.+..=|...+.|- ..++++..+++-.-+.|. +-+|.... .+ .. .+.+.++|.... ++..-++|... ++.+++
T Consensus 448 s~i~~i~~~~~~~-~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~~--~~~~~~ 523 (555)
T TIGR03143 448 SFILALYNAAGPG-QPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVSH--FPDLKD 523 (555)
T ss_pred HHHHHHHHhcCCC-CCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECcc--cHHHHH
Confidence 3333344444442 356888888888777787 66666654 22 34 677788887754 68899999986 788998
Q ss_pred hhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHH
Q 031686 106 YFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFA 143 (155)
Q Consensus 106 ~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi 143 (155)
.+|+-. .|+++|-+ ++. ..|..+.+.|.+++
T Consensus 524 ~~~v~~--vP~~~i~~----~~~-~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 524 EYGIMS--VPAIVVDD----QQV-YFGKKTIEEMLELI 554 (555)
T ss_pred hCCcee--cCEEEECC----EEE-EeeCCCHHHHHHhh
Confidence 888853 79998742 222 34656888877664
No 122
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=66.22 E-value=22 Score=22.01 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=33.3
Q ss_pred hhhcCCCceEEEEeecC--ChhH-HHHH---HHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686 53 LILNSPLKLLWLFAAVH--DSEA-KSIF---QETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI 122 (155)
Q Consensus 53 ~i~~~~~~~v~lf~~~~--~~~~-~~~~---~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~ 122 (155)
+..+.++|+++.|...- .-.. .+.+ .++.+...++++++.+|.+.. ....+..+ . -+|+++++++
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~--~~~~~~~~-~--~~P~~~~ldp 82 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDE--DPNAQFDR-Q--GYPTFFFLDP 82 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTH--HHHHHHHH-C--SSSEEEEEET
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCC--ChhHHhCC-c--cCCEEEEeCC
Confidence 33445667766664332 1111 1111 123333445789999999863 22222222 2 2899999873
No 123
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=65.25 E-value=58 Score=24.66 Aligned_cols=109 Identities=10% Similarity=0.059 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCCCeEecC-CCchhhhhcCCCceEEEEeecCC-h-hH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhh
Q 031686 30 VIDDFISLNKIPPMITYS-RETTPLILNSPLKLLWLFAAVHD-S-EA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFD 105 (155)
Q Consensus 30 ~l~~fI~~~~~P~v~e~~-~~~~~~i~~~~~~~v~lf~~~~~-~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~ 105 (155)
.-+.|+++- ..-+.++. ...+...-.....++.-|+.++- . .- -+.|..+|++|-+ ..|+-+++.. .+=+..
T Consensus 56 kr~~~~~~G-hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae~--~PFlv~ 131 (211)
T KOG1672|consen 56 KRKEWLSKG-HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAEK--APFLVT 131 (211)
T ss_pred HHHHHHHcC-CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEeccc--Cceeee
Confidence 345566655 44466665 33333333344455666665542 1 22 5688889998764 7899999986 344567
Q ss_pred hhCCCCCCcceEEEEecCCCeeec--CC--C---CCCHHHHHHHHH
Q 031686 106 YFGVTCYTSRVIAVASIRKRKKYV--LN--G---ELTLSNVKSFAL 144 (155)
Q Consensus 106 ~~gl~~~~~P~v~i~~~~~~~kY~--~~--~---~~t~~~I~~Fi~ 144 (155)
.++++- +|+++++......-|. ++ | +|+.+.|+.=+.
T Consensus 132 kL~IkV--LP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~ 175 (211)
T KOG1672|consen 132 KLNIKV--LPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA 175 (211)
T ss_pred eeeeeE--eeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence 888864 8999988753212232 22 2 688888775443
No 124
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=64.12 E-value=6.2 Score=25.88 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.1
Q ss_pred Eec-cCCcCHHHHHHHHHhCC
Q 031686 20 IFS-DVSFTISVIDDFISLNK 39 (155)
Q Consensus 20 ~~y-~g~~~~~~l~~fI~~~~ 39 (155)
+.| +|+++.++|.+||..+.
T Consensus 81 ~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 81 VTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred cccCCCCCCHHHHHHHHHHhc
Confidence 468 88899999999998764
No 125
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=63.79 E-value=71 Score=27.62 Aligned_cols=67 Identities=18% Similarity=0.035 Sum_probs=43.0
Q ss_pred hhhhhcCC-Cce-EEEEeecCC--hhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEec
Q 031686 51 TPLILNSP-LKL-LWLFAAVHD--SEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASI 122 (155)
Q Consensus 51 ~~~i~~~~-~~~-v~lf~~~~~--~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~ 122 (155)
+..+|..- .|+ +.+|.+..+ +.+ .+.+.++| ...+++.+...|... .++..+.+|++ ..|++.|.+.
T Consensus 357 l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~--~~~~~~~~~v~--~~P~~~i~~~ 428 (555)
T TIGR03143 357 LVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGE--EPESETLPKIT--KLPTVALLDD 428 (555)
T ss_pred HHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEecccc--chhhHhhcCCC--cCCEEEEEeC
Confidence 45555532 355 566766532 344 66666777 445778887766553 35677888876 5899999863
No 126
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=63.48 E-value=14 Score=23.13 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCe-eecCCCCCCHHHHHHHHH
Q 031686 74 KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRK-KYVLNGELTLSNVKSFAL 144 (155)
Q Consensus 74 ~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~-kY~~~~~~t~~~I~~Fi~ 144 (155)
...+.+++... .+....+|.+. .+.+.+.||. ..|.+.+.+..... .......++.+.|.+|++
T Consensus 17 ~~~L~~~~~~~--~~~l~~vDI~~--d~~l~~~Y~~---~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 17 KEILEEVAAEF--PFELEEVDIDE--DPELFEKYGY---RIPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp HHHHHHCCTTS--TCEEEEEETTT--THHHHHHSCT---STSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred HHHHHHHHhhc--CceEEEEECCC--CHHHHHHhcC---CCCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 44444443332 37788888885 4567888886 48987765521100 111123589999999885
No 127
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=63.27 E-value=6.1 Score=27.12 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=17.1
Q ss_pred EeccCC-cCHHHHHHHHHhC
Q 031686 20 IFSDVS-FTISVIDDFISLN 38 (155)
Q Consensus 20 ~~y~g~-~~~~~l~~fI~~~ 38 (155)
..|+|+ ++.++|.+||.++
T Consensus 96 ~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 96 VPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred ccCCCCcccHHHHHHHHHhc
Confidence 579996 9999999999987
No 128
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=60.89 E-value=53 Score=28.06 Aligned_cols=94 Identities=3% Similarity=-0.159 Sum_probs=64.6
Q ss_pred EeccCCcCHHHHHHH---HHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEE
Q 031686 20 IFSDVSFTISVIDDF---ISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVY 92 (155)
Q Consensus 20 ~~y~g~~~~~~l~~f---I~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~ 92 (155)
+.|.|-=.-.++..| |...+.| -..++++..+.+-+-+.|+ +-+|+... .+ .. .+.+.++|..+. .+.+-+
T Consensus 75 i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~-~i~~~~ 152 (517)
T PRK15317 75 VRFAGIPMGHEFTSLVLALLQVGGH-PPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP-NITHTM 152 (517)
T ss_pred EEEEecCccHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-CceEEE
Confidence 455553233455555 4444555 4556888888888777788 77777664 22 44 677788887644 688999
Q ss_pred EeCCCcchhhhhhhhCCCCCCcceEEE
Q 031686 93 SQIYPKLKGQIFDYFGVTCYTSRVIAV 119 (155)
Q Consensus 93 vd~~~~~~~~~~~~~gl~~~~~P~v~i 119 (155)
+|+.. ++++++.+++. ..|++.+
T Consensus 153 id~~~--~~~~~~~~~v~--~VP~~~i 175 (517)
T PRK15317 153 IDGAL--FQDEVEARNIM--AVPTVFL 175 (517)
T ss_pred EEchh--CHhHHHhcCCc--ccCEEEE
Confidence 98886 78999998886 4899976
No 129
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=57.63 E-value=86 Score=24.17 Aligned_cols=34 Identities=3% Similarity=-0.170 Sum_probs=22.4
Q ss_pred ceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686 115 RVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 115 P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~ 148 (155)
|...+++.+..-.+.+.|..+++.|++.|+.+++
T Consensus 202 PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 202 FEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred ceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 4555666543223444566789999999998875
No 130
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=57.18 E-value=42 Score=21.94 Aligned_cols=42 Identities=12% Similarity=0.141 Sum_probs=30.8
Q ss_pred hcCCCceEEEEeecCChhHHHHHHHHHHhhcCceEEEEEeCC
Q 031686 55 LNSPLKLLWLFAAVHDSEAKSIFQETARAFKGKLLFVYSQIY 96 (155)
Q Consensus 55 ~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~~vd~~ 96 (155)
...+++.++.+++..++...+.|+.||.-+|++=.|...-++
T Consensus 13 id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~ 54 (91)
T cd03070 13 VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGD 54 (91)
T ss_pred hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecc
Confidence 445566788888765433478899999999998877776555
No 131
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=56.11 E-value=22 Score=28.02 Aligned_cols=53 Identities=9% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHHHHHHHHh-------CCCCCeEecCC-----CchhhhhcCCCceEEEEeecCChhHHHHHHHHHHhhc
Q 031686 28 ISVIDDFISL-------NKIPPMITYSR-----ETTPLILNSPLKLLWLFAAVHDSEAKSIFQETARAFK 85 (155)
Q Consensus 28 ~~~l~~fI~~-------~~~P~v~e~~~-----~~~~~i~~~~~~~v~lf~~~~~~~~~~~~~~vA~~~~ 85 (155)
.+.|.+||.. --.|+++..++ +-..+|.+.-.|.++.++-. .+.++++|++||
T Consensus 159 LeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT-----~eqvk~vak~yR 223 (280)
T KOG2792|consen 159 LEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGT-----TEQVKQVAKKYR 223 (280)
T ss_pred HHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCC-----HHHHHHHHHHhE
Confidence 3556677761 12378888877 23556666666666666533 357888999987
No 132
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=54.93 E-value=14 Score=25.74 Aligned_cols=26 Identities=15% Similarity=-0.010 Sum_probs=18.8
Q ss_pred eeeEEEec--cCCcCHHHHHHHHHhCCC
Q 031686 15 SVFCFIFS--DVSFTISVIDDFISLNKI 40 (155)
Q Consensus 15 ~~~~~~~y--~g~~~~~~l~~fI~~~~~ 40 (155)
+....+.| +|+++.++|+.|++.++-
T Consensus 93 ~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 93 DKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp STTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 33445666 899999999999999964
No 133
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=53.14 E-value=64 Score=23.41 Aligned_cols=21 Identities=5% Similarity=0.102 Sum_probs=14.4
Q ss_pred hhhhhhhCCCCCCcceEEEEecC
Q 031686 101 GQIFDYFGVTCYTSRVIAVASIR 123 (155)
Q Consensus 101 ~~~~~~~gl~~~~~P~v~i~~~~ 123 (155)
.++.+.|+++. +|++++++.+
T Consensus 105 ~~l~~ky~v~~--iP~l~i~~~d 125 (157)
T KOG2501|consen 105 QKLSEKYEVKG--IPALVILKPD 125 (157)
T ss_pred HHHHHhcccCc--CceeEEecCC
Confidence 35555666653 7999988864
No 134
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=51.32 E-value=74 Score=21.47 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=12.7
Q ss_pred hhhhCCCCCCcceEEEEecC
Q 031686 104 FDYFGVTCYTSRVIAVASIR 123 (155)
Q Consensus 104 ~~~~gl~~~~~P~v~i~~~~ 123 (155)
.+.||+. .+|++.+++.+
T Consensus 92 ~~~~~v~--~iPt~~lid~~ 109 (132)
T cd02964 92 EKQFKVE--GIPTLVVLKPD 109 (132)
T ss_pred HHHcCCC--CCCEEEEECCC
Confidence 3457765 37999999864
No 135
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=48.72 E-value=10 Score=22.96 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHcCCCccC
Q 031686 133 ELTLSNVKSFALDFLGDKLRNQ 154 (155)
Q Consensus 133 ~~t~~~I~~Fi~~f~~Gkl~p~ 154 (155)
++|.+.+..+++.+.+|++.|.
T Consensus 14 ~Ls~~e~~~~~~~i~~g~~s~~ 35 (66)
T PF02885_consen 14 DLSREEAKAAFDAILDGEVSDA 35 (66)
T ss_dssp ---HHHHHHHHHHHHTTSS-HH
T ss_pred CCCHHHHHHHHHHHHcCCCCHH
Confidence 6899999999999999998764
No 136
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=47.55 E-value=1.3e+02 Score=23.09 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCCCeEecCCCc-hhhhhcCCCceEEEEeec--CC---hhH-HHHHHHHHHhhcCceEEEEEeCCCcchh
Q 031686 29 SVIDDFISLNKIPPMITYSRET-TPLILNSPLKLLWLFAAV--HD---SEA-KSIFQETARAFKGKLLFVYSQIYPKLKG 101 (155)
Q Consensus 29 ~~l~~fI~~~~~P~v~e~~~~~-~~~i~~~~~~~v~lf~~~--~~---~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~ 101 (155)
.++++-.+++.+..|.++|... ...+-..+.. +|+++.- .. ..- ...|..+|.+|. .+.|+-+-+.+-
T Consensus 79 ~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~g-vwVvvhLy~~gvp~c~Ll~~~l~~la~kfp-~iKFVki~at~c--- 153 (240)
T KOG3170|consen 79 AEWRATAEKAKFGEVFPISGPDYVKEVTKASEG-VWVVVHLYKQGVPLCALLSHHLQSLACKFP-QIKFVKIPATTC--- 153 (240)
T ss_pred HHHHHHHHHhcccceeeccchHHHHHHHhccCc-cEEEEEeeccccHHHHHHHHHHHHHhhcCC-cceEEecccccc---
Confidence 4566668888999999999644 4444444433 4444332 22 223 557788999987 478887766531
Q ss_pred hhhhhhCCCCCCcceEEEEecCCC-eeec--C--CC-CCCHHHHHHHHHH
Q 031686 102 QIFDYFGVTCYTSRVIAVASIRKR-KKYV--L--NG-ELTLSNVKSFALD 145 (155)
Q Consensus 102 ~~~~~~gl~~~~~P~v~i~~~~~~-~kY~--~--~~-~~t~~~I~~Fi~~ 145 (155)
.. +-.+..+|++.|+.-..- ..|. . -| ..|.+++..|+-+
T Consensus 154 --Ip--NYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 154 --IP--NYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred --cC--CCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 11 123457999999884211 2331 1 23 5789999888754
No 137
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=46.44 E-value=1.2e+02 Score=22.47 Aligned_cols=75 Identities=7% Similarity=0.027 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhcCceEEEEEeCCC-cc--------hhhhhhhhCCCCCCcceEEEEecCCCeeec-CCCCCCHHHHHHHH
Q 031686 74 KSIFQETARAFKGKLLFVYSQIYP-KL--------KGQIFDYFGVTCYTSRVIAVASIRKRKKYV-LNGELTLSNVKSFA 143 (155)
Q Consensus 74 ~~~~~~vA~~~~~~i~F~~vd~~~-~~--------~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~-~~~~~t~~~I~~Fi 143 (155)
...++++++++.-.+.-+.+|... .. ...+.+.||.....+|+..++|.++...|+ .-|.++.+.|++-+
T Consensus 88 ~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I 167 (181)
T PRK13728 88 DPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARM 167 (181)
T ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHH
Confidence 667888888885444444455331 00 122445777422459999999986433353 45788888888877
Q ss_pred HHHHc
Q 031686 144 LDFLG 148 (155)
Q Consensus 144 ~~f~~ 148 (155)
...++
T Consensus 168 ~~ll~ 172 (181)
T PRK13728 168 DTVLQ 172 (181)
T ss_pred HHHHh
Confidence 77654
No 138
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=46.39 E-value=25 Score=18.82 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=16.1
Q ss_pred CcCHHHHHHHHHhCCCCCeE
Q 031686 25 SFTISVIDDFISLNKIPPMI 44 (155)
Q Consensus 25 ~~~~~~l~~fI~~~~~P~v~ 44 (155)
.++.++|++|+..+.+|.=.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPK 22 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCC
Confidence 46789999999999887543
No 139
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=46.37 E-value=87 Score=20.87 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=11.6
Q ss_pred hhhhhhCCCCCCcceEEEEecC
Q 031686 102 QIFDYFGVTCYTSRVIAVASIR 123 (155)
Q Consensus 102 ~~~~~~gl~~~~~P~v~i~~~~ 123 (155)
.+.+.||+. ..|+..|++.+
T Consensus 96 ~~~~~~~v~--~~P~~~vid~~ 115 (126)
T cd03012 96 ATWRAYGNQ--YWPALYLIDPT 115 (126)
T ss_pred HHHHHhCCC--cCCeEEEECCC
Confidence 344455553 36777777754
No 140
>CHL00005 rps16 ribosomal protein S16
Probab=46.06 E-value=24 Score=22.74 Aligned_cols=39 Identities=18% Similarity=0.257 Sum_probs=29.3
Q ss_pred eccCCceeeeeeeeEEEeccCCcCHHHHHHHHHhCCCCC
Q 031686 4 SASNGRFIHALSVFCFIFSDVSFTISVIDDFISLNKIPP 42 (155)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~y~g~~~~~~l~~fI~~~~~P~ 42 (155)
+..+||||-.+|..+-..=.-.++.+.+..|+..-..|.
T Consensus 26 ~~RdGk~iE~lG~YnP~~~~~~ln~eri~~Wl~~GAqpt 64 (82)
T CHL00005 26 SRREGRDLEKVGFYDPIKNQTYLNVPAILYFLEKGAQPT 64 (82)
T ss_pred CCCCCcceeEeeeccCCCcccEEeHHHHHHHHHCcCccC
Confidence 467899998888766543223568899999999888775
No 141
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=45.78 E-value=41 Score=26.09 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred CCeEecCCCc---hhhhhcCCCceEEEEeecC--ChhH-HHHHHHHHHhhcCc--eEEEEE
Q 031686 41 PPMITYSRET---TPLILNSPLKLLWLFAAVH--DSEA-KSIFQETARAFKGK--LLFVYS 93 (155)
Q Consensus 41 P~v~e~~~~~---~~~i~~~~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~--i~F~~v 93 (155)
+.|..++.++ +-.+...+.|+++-|-+-. .+.. .+.|++++++|.+. ++.+++
T Consensus 82 s~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 82 SPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 3466666544 5566777888887776654 3666 88999999999974 444443
No 142
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=25 Score=27.19 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcC-ceEEEEEeCCCcchhhhhhhhCCCC----CCcceEEEEec
Q 031686 75 SIFQETARAFKG-KLLFVYSQIYPKLKGQIFDYFGVTC----YTSRVIAVASI 122 (155)
Q Consensus 75 ~~~~~vA~~~~~-~i~F~~vd~~~~~~~~~~~~~gl~~----~~~P~v~i~~~ 122 (155)
-.|.++..+|.. .+.|..+|... +....+.|+++. .++|++++.+.
T Consensus 164 pvfaeLS~kyn~~~lkFGkvDiGr--fpd~a~kfris~s~~srQLPT~ilFq~ 214 (265)
T KOG0914|consen 164 PVFAELSIKYNNNLLKFGKVDIGR--FPDVAAKFRISLSPGSRQLPTYILFQK 214 (265)
T ss_pred cccHHHHHHhCCCCCcccceeecc--CcChHHheeeccCcccccCCeEEEEcc
Confidence 468888888875 58899999996 788999998762 57999998885
No 143
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=44.94 E-value=1.6e+02 Score=25.07 Aligned_cols=85 Identities=6% Similarity=-0.104 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC-Ch-hH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhh
Q 031686 29 SVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH-DS-EA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIF 104 (155)
Q Consensus 29 ~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~-~~-~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~ 104 (155)
..+..=|..-+.| -..++++..+++-+-+.|. +-+|+... .+ .. .+.+.++|..+. .+..-++|+.. +++++
T Consensus 88 ~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p-~i~~~~id~~~--~~~~~ 163 (515)
T TIGR03140 88 TSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP-NISHTMIDGAL--FQDEV 163 (515)
T ss_pred HHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-CceEEEEEchh--CHHHH
Confidence 3344444445555 3677888888888777787 77777664 22 44 677777887755 68888888886 78888
Q ss_pred hhhCCCCCCcceEEE
Q 031686 105 DYFGVTCYTSRVIAV 119 (155)
Q Consensus 105 ~~~gl~~~~~P~v~i 119 (155)
+.+++. ..|.+.|
T Consensus 164 ~~~~v~--~VP~~~i 176 (515)
T TIGR03140 164 EALGIQ--GVPAVFL 176 (515)
T ss_pred HhcCCc--ccCEEEE
Confidence 988886 4899986
No 144
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=44.33 E-value=91 Score=23.11 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCceE--EEEEeCCCcchhhhhhhhCCCCCCcceE-EEEecCCCeeecCCCCCCHHHHHHHHH
Q 031686 76 IFQETARAFKGKLL--FVYSQIYPKLKGQIFDYFGVTCYTSRVI-AVASIRKRKKYVLNGELTLSNVKSFAL 144 (155)
Q Consensus 76 ~~~~vA~~~~~~i~--F~~vd~~~~~~~~~~~~~gl~~~~~P~v-~i~~~~~~~kY~~~~~~t~~~I~~Fi~ 144 (155)
-++..+++.+..+- -++.|.. ..+...+|+.+ .|.- .|+|.+..-.|...|.++.+.+++.+.
T Consensus 112 fVk~fie~~~~~~P~~~vllD~~----g~v~~~~gv~~--~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 112 FVKSSAKKGKKENPWSQVVLDDK----GAVKNAWQLNS--EDSAIIVLDKTGKVKFVKEGALSDSDIQTVIS 177 (184)
T ss_pred HHHHHHHHhcccCCcceEEECCc----chHHHhcCCCC--CCceEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 34455555543332 3455543 25566788864 6655 788875434666678889988888444
No 145
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=42.96 E-value=1e+02 Score=22.43 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=35.6
Q ss_pred EEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHc
Q 031686 90 FVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 90 F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~ 148 (155)
-+++|.+. -+.+..+|.++ --+++|++.+..-.|.-+|.+|++++.+++.-+.+
T Consensus 106 ~~vlD~~G----~~~~aW~L~~~-~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 106 QFVLDSNG----VVRKAWQLQEE-SSAIIVLDKQGKVQFVKEGALSPAEVQQVIALLKK 159 (160)
T ss_pred EEEEcCCC----ceeccccCCCC-CceEEEEcCCccEEEEECCCCCHHHHHHHHHHHhc
Confidence 34455553 33455667643 34677888654346766889999999999976543
No 146
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=41.27 E-value=44 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=25.6
Q ss_pred ceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCccC
Q 031686 115 RVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRNQ 154 (155)
Q Consensus 115 P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~p~ 154 (155)
|.+.|.| ..| ++.|++.+.+-+++..+||..|.
T Consensus 168 Pmi~IND----~yy---edlt~k~l~eIle~L~~~k~pp~ 200 (233)
T KOG3196|consen 168 PMIAIND----DYY---EDLTPKKLVEILEDLKAGKKPPA 200 (233)
T ss_pred ceeeecc----hhh---ccCCHHHHHHHHHHHhcCCCCCC
Confidence 6666544 233 36899999999999999999874
No 147
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=38.43 E-value=1.4e+02 Score=20.88 Aligned_cols=71 Identities=11% Similarity=0.193 Sum_probs=42.3
Q ss_pred eEEEEeecCChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHH
Q 031686 61 LLWLFAAVHDSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNV 139 (155)
Q Consensus 61 ~v~lf~~~~~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I 139 (155)
.+|++++..-... .++|+++++.....++..- . .++ +-|.+ +... ++...++ ..+...|
T Consensus 51 aV~i~Y~p~~~~~~v~~L~~l~~~~~~~~visP---~----------~~~---~~pia-ltaW--g~~l~~~-~~d~~~i 110 (130)
T PF11303_consen 51 AVWITYDPCLPPDQVAKLKALAKSCLPYVVISP---Y----------PGL---DRPIA-LTAW--GRQLKLD-SADDPRI 110 (130)
T ss_pred cEEEEECCCCCHHHHHHHHHHHhccCCcEEEec---C----------CCC---CCCEE-Eeec--CCEeecC-cCCHHHH
Confidence 4677776652345 8899999988665322211 1 122 23522 2222 3344443 5788999
Q ss_pred HHHHHHHHcCCC
Q 031686 140 KSFALDFLGDKL 151 (155)
Q Consensus 140 ~~Fi~~f~~Gkl 151 (155)
.+||+.+..|--
T Consensus 111 ~~Fi~~~~~~p~ 122 (130)
T PF11303_consen 111 KQFIRKYLQGPQ 122 (130)
T ss_pred HHHHHHHhcCCC
Confidence 999999988753
No 148
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=37.80 E-value=1.1e+02 Score=19.63 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=25.6
Q ss_pred CCceEEEEeecC--ChhH-HHHHHHHHHhhcCceEEEEE-eCCCcchhhhhhhhCCC
Q 031686 58 PLKLLWLFAAVH--DSEA-KSIFQETARAFKGKLLFVYS-QIYPKLKGQIFDYFGVT 110 (155)
Q Consensus 58 ~~~~v~lf~~~~--~~~~-~~~~~~vA~~~~~~i~F~~v-d~~~~~~~~~~~~~gl~ 110 (155)
+++.++.|.... .-.. ...+.++++++.+++.++.+ +.+......+++.+++.
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLE 77 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCC
Confidence 445555565432 1223 45566777766655544443 22211234455555553
No 149
>PTZ00056 glutathione peroxidase; Provisional
Probab=35.80 E-value=1.8e+02 Score=21.49 Aligned_cols=33 Identities=6% Similarity=-0.042 Sum_probs=19.4
Q ss_pred EEEEecCCCeeecCCCCCCHHHHHHHHHHHHcC
Q 031686 117 IAVASIRKRKKYVLNGELTLSNVKSFALDFLGD 149 (155)
Q Consensus 117 v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~G 149 (155)
..+++.+..-.+...+..+.+.|.+.|+..++.
T Consensus 148 tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 148 KFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred EEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 445554322223334566788888888887653
No 150
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=35.44 E-value=35 Score=23.63 Aligned_cols=75 Identities=8% Similarity=0.023 Sum_probs=35.9
Q ss_pred cCCCchhhhhcCCCce-EEEEeec--CChhH-HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhh-CCCCCCcceEEEE
Q 031686 46 YSRETTPLILNSPLKL-LWLFAAV--HDSEA-KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYF-GVTCYTSRVIAVA 120 (155)
Q Consensus 46 ~~~~~~~~i~~~~~~~-v~lf~~~--~~~~~-~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~-gl~~~~~P~v~i~ 120 (155)
++.+....+-....+. ++++... .|... .-.+..+|+... .+.+-++.-+. +..+++.+ .......|.+++.
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~--~~el~~~~lt~g~~~IP~~I~~ 104 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDE--NKELMDQYLTNGGRSIPTFIFL 104 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHH--HHHHTTTTTT-SS--SSEEEEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecC--ChhHHHHHHhCCCeecCEEEEE
Confidence 3344445555556666 5555544 25455 667888887752 34444443332 34555543 3334569999999
Q ss_pred ecC
Q 031686 121 SIR 123 (155)
Q Consensus 121 ~~~ 123 (155)
+.+
T Consensus 105 d~~ 107 (129)
T PF14595_consen 105 DKD 107 (129)
T ss_dssp -TT
T ss_pred cCC
Confidence 864
No 151
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=34.78 E-value=13 Score=26.11 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=28.7
Q ss_pred ceeeeeeeeEEEeccCC---cCHHHHHHHHHhCCCCCeEecCCCchhhhhc
Q 031686 9 RFIHALSVFCFIFSDVS---FTISVIDDFISLNKIPPMITYSRETTPLILN 56 (155)
Q Consensus 9 ~~~~~~~~~~~~~y~g~---~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~ 56 (155)
+-+|+.++++....+.+ .....|.+|++++..|-+..++...+-+...
T Consensus 71 ~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTRaLt~~lR 121 (131)
T PF00988_consen 71 DRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTRALTRKLR 121 (131)
T ss_dssp SS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HHHHHHHHH
T ss_pred CceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHHHHHHHHH
Confidence 46788888887766643 3457999999999999999888755554433
No 152
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=34.39 E-value=63 Score=26.59 Aligned_cols=58 Identities=16% Similarity=0.107 Sum_probs=40.2
Q ss_pred ceeeeeeeeEEEeccC---CcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEe
Q 031686 9 RFIHALSVFCFIFSDV---SFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFA 66 (155)
Q Consensus 9 ~~~~~~~~~~~~~y~g---~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~ 66 (155)
.-+|+.++++...-+. -.....|.+|++++..|-+.-++...+-+.......+ ..+..
T Consensus 73 ~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR~l~~~iR~~G~~~~~i~~ 134 (360)
T PRK12564 73 DRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTRALTRKLREKGAMKGVIAT 134 (360)
T ss_pred CCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHHHHHHHHHhcCCceEEEec
Confidence 3478888887764432 2467899999999999999999876655544443333 44544
No 153
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=33.13 E-value=2.3e+02 Score=24.96 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=41.8
Q ss_pred ceEEEEEeCCCc--chhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHH
Q 031686 87 KLLFVYSQIYPK--LKGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFL 147 (155)
Q Consensus 87 ~i~F~~vd~~~~--~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~ 147 (155)
+++..-+|-... ....+++.||+=+ .|++.+++...++.=..++.+|.+.+.+.+++..
T Consensus 508 ~~vlLqaDvT~~~p~~~~lLk~~~~~G--~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 508 DVVLLQADVTANDPAITALLKRLGVFG--VPTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CeEEEEeeecCCCHHHHHHHHHcCCCC--CCEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 467777776542 2556788888754 7999999865444334667889999999888753
No 154
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=33.04 E-value=53 Score=20.71 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=28.6
Q ss_pred eccCCceeeeeeeeEEEeccC----CcCHHHHHHHHHhCCCCC
Q 031686 4 SASNGRFIHALSVFCFIFSDV----SFTISVIDDFISLNKIPP 42 (155)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~y~g----~~~~~~l~~fI~~~~~P~ 42 (155)
+..+|+||-.+|..+-..=.+ .++.+.+..|+..-..|.
T Consensus 26 ~~RdGk~iE~lG~ydP~~~~~~~~i~ln~eri~~Wl~~GAqpt 68 (75)
T PRK00040 26 SPRDGRFIERVGFYNPLAKPAEEEVKLDEERVLYWLGQGAQPT 68 (75)
T ss_pred CCCCCCceeEEeecCCCCCCCcceEEEcHHHHHHHHHCCCccC
Confidence 457899999888865433222 457899999999888775
No 155
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=32.82 E-value=53 Score=20.76 Aligned_cols=32 Identities=6% Similarity=0.098 Sum_probs=18.4
Q ss_pred cceEEEEecCCCeeecCC-CCCCHHHHHHHHHH
Q 031686 114 SRVIAVASIRKRKKYVLN-GELTLSNVKSFALD 145 (155)
Q Consensus 114 ~P~v~i~~~~~~~kY~~~-~~~t~~~I~~Fi~~ 145 (155)
.|.+.+.+.....+=.++ +.++.++|.+|+++
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 488888885322111122 46899999999986
No 156
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=32.29 E-value=45 Score=20.24 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=18.1
Q ss_pred eeeeeeeeEEEeccCCcCHHHHHHHHHhC
Q 031686 10 FIHALSVFCFIFSDVSFTISVIDDFISLN 38 (155)
Q Consensus 10 ~~~~~~~~~~~~y~g~~~~~~l~~fI~~~ 38 (155)
-||++||. .++.++|+.|+..+
T Consensus 7 avhirGvd-------~lsT~dI~~y~~~y 28 (62)
T PF10309_consen 7 AVHIRGVD-------ELSTDDIKAYFSEY 28 (62)
T ss_pred eEEEEcCC-------CCCHHHHHHHHHHh
Confidence 47888864 47889999999998
No 157
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=30.74 E-value=2.1e+02 Score=20.77 Aligned_cols=36 Identities=8% Similarity=-0.147 Sum_probs=23.9
Q ss_pred CcceEEEEecCCCeeecCCCC-CCHHHHHHHHHHHHcCC
Q 031686 113 TSRVIAVASIRKRKKYVLNGE-LTLSNVKSFALDFLGDK 150 (155)
Q Consensus 113 ~~P~v~i~~~~~~~kY~~~~~-~t~~~I~~Fi~~f~~Gk 150 (155)
..|...+++.+..-.+. +. -+.+.+++.++....|.
T Consensus 146 ~~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~l~~~~ 182 (189)
T TIGR02661 146 KIPYGVLLDQDGKIRAK--GLTNTREHLESLLEADREGF 182 (189)
T ss_pred ccceEEEECCCCeEEEc--cCCCCHHHHHHHHHHHHcCc
Confidence 37888888865322332 22 36788999999888774
No 158
>PRK13190 putative peroxiredoxin; Provisional
Probab=28.70 E-value=2.4e+02 Score=20.79 Aligned_cols=53 Identities=4% Similarity=0.002 Sum_probs=33.9
Q ss_pred hhhhhhhCCCC----CCcceEEEEecCCCeee----cCCCCCCHHHHHHHHHHHHc----CCCcc
Q 031686 101 GQIFDYFGVTC----YTSRVIAVASIRKRKKY----VLNGELTLSNVKSFALDFLG----DKLRN 153 (155)
Q Consensus 101 ~~~~~~~gl~~----~~~P~v~i~~~~~~~kY----~~~~~~t~~~I~~Fi~~f~~----Gkl~p 153 (155)
..+.+.||+.. ...|+..|++.+..-+| +....-+.++|.+.++.++. |.+.|
T Consensus 100 ~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~~~~~~~~~~p 164 (202)
T PRK13190 100 KELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQVNWKRKVATP 164 (202)
T ss_pred hHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhhhHHhcCCCcC
Confidence 46778888732 13799999997532233 22334578888888887765 55554
No 159
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=28.63 E-value=1.4e+02 Score=19.95 Aligned_cols=11 Identities=0% Similarity=0.111 Sum_probs=4.8
Q ss_pred HHHHHHHHHhh
Q 031686 74 KSIFQETARAF 84 (155)
Q Consensus 74 ~~~~~~vA~~~ 84 (155)
...++++++++
T Consensus 42 l~~l~~~~~~~ 52 (142)
T cd02968 42 LANLAQALKQL 52 (142)
T ss_pred HHHHHHHHHHh
Confidence 33444444444
No 160
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.32 E-value=86 Score=24.64 Aligned_cols=32 Identities=9% Similarity=0.019 Sum_probs=26.1
Q ss_pred eEEEeccCCcCHHHHHHHHHhCCCCCeEecCC
Q 031686 17 FCFIFSDVSFTISVIDDFISLNKIPPMITYSR 48 (155)
Q Consensus 17 ~~~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~ 48 (155)
.|.....|..+.+.|.+|++++..-++..-|.
T Consensus 44 ~~~~~~~G~l~~e~l~~~l~e~~i~llIDATH 75 (257)
T COG2099 44 IGPVRVGGFLGAEGLAAFLREEGIDLLIDATH 75 (257)
T ss_pred cCCeeecCcCCHHHHHHHHHHcCCCEEEECCC
Confidence 34456678889999999999999888877765
No 161
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=28.29 E-value=1.8e+02 Score=23.47 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEeecCCh-hH-HHHHHHHHHhhcCceEEEEEeC
Q 031686 26 FTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFAAVHDS-EA-KSIFQETARAFKGKLLFVYSQI 95 (155)
Q Consensus 26 ~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~~~~~~-~~-~~~~~~vA~~~~~~i~F~~vd~ 95 (155)
.+.+.|..|-....-.........+...-.....|++++|-+.+.+ .. .+.|-.+...|.+++-|+.+=+
T Consensus 166 yd~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~EsF~~~VL~dlI~ils~~~~~lP~vli~G 237 (330)
T PF07034_consen 166 YDMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDFESFDSQVLQDLILILSSYLDRLPFVLIFG 237 (330)
T ss_pred CCHHHHHHHHHhhhccccchhhhcccccccccCCCEEEEEcccccCCHHHHHHHHHHHHhccCCcCEEEEEe
Confidence 3667788888743332222222222222122223445555444533 34 7788888888888866655544
No 162
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.92 E-value=1.6e+02 Score=22.68 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=35.0
Q ss_pred hhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHHHHHcCCCccC
Q 031686 102 QIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFALDFLGDKLRNQ 154 (155)
Q Consensus 102 ~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~~f~~Gkl~p~ 154 (155)
+..+.+|+++ .|.+++ +.+|...|--+++-+.+=|++..+.+.++.
T Consensus 175 ~~A~e~gI~g--VP~fv~-----d~~~~V~Gaq~~~v~~~al~~~~~~~~~~~ 220 (225)
T COG2761 175 AAAQEMGIRG--VPTFVF-----DGKYAVSGAQPYDVLEDALRQLLAEKAEEH 220 (225)
T ss_pred HHHHHCCCcc--CceEEE-----cCcEeecCCCCHHHHHHHHHHHHhcccccC
Confidence 3456788875 799987 247888887788889998999888777654
No 163
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=27.79 E-value=89 Score=18.54 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHcCCCcc
Q 031686 133 ELTLSNVKSFALDFLGDKLRN 153 (155)
Q Consensus 133 ~~t~~~I~~Fi~~f~~Gkl~p 153 (155)
.+|.++|.+|+....+|..+.
T Consensus 43 ~~t~~dln~Flk~W~~G~~~~ 63 (70)
T PF07735_consen 43 KFTNEDLNKFLKHWINGSNPR 63 (70)
T ss_pred CCCHHHHHHHHHHHHcCCCcC
Confidence 589999999999999996543
No 164
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=27.58 E-value=69 Score=20.88 Aligned_cols=39 Identities=10% Similarity=0.353 Sum_probs=28.0
Q ss_pred eccCCceeeeeeeeEEEeccC--CcCHHHHHHHHHhCCCCC
Q 031686 4 SASNGRFIHALSVFCFIFSDV--SFTISVIDDFISLNKIPP 42 (155)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~y~g--~~~~~~l~~fI~~~~~P~ 42 (155)
+..+||||-.+|..+-..-.. .++.+.+..|+.+-..|.
T Consensus 27 ~~RdGk~IE~lG~YnP~~~~~~i~ln~eri~~WL~~GAqpT 67 (88)
T PRK14525 27 NARDGKYLEDVGIYDPTKRPERIELKVERIEHWLKAGAKPS 67 (88)
T ss_pred CCCCCCceeEEecccCCCCCceEEEcHHHHHHHHHCCCccC
Confidence 456899988888766442222 357889999999988775
No 165
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=27.15 E-value=1.9e+02 Score=19.10 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=16.3
Q ss_pred CCcC-HHHHHHHHHhCCCCCeEe
Q 031686 24 VSFT-ISVIDDFISLNKIPPMIT 45 (155)
Q Consensus 24 g~~~-~~~l~~fI~~~~~P~v~e 45 (155)
+++. ..-|.+|++.+.+|...-
T Consensus 8 SPwnly~~l~~Fl~~~~~P~G~~ 30 (100)
T PF09949_consen 8 SPWNLYPFLRDFLRRNGFPAGPL 30 (100)
T ss_pred CHHHHHHHHHHHHHhcCCCCCce
Confidence 3443 367999999999997653
No 166
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=26.99 E-value=2.1e+02 Score=19.42 Aligned_cols=42 Identities=7% Similarity=-0.017 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecC
Q 031686 28 ISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVH 69 (155)
Q Consensus 28 ~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~ 69 (155)
.+.+..+.+....|.+...|.+.+....+.+.+. ++...+..
T Consensus 58 ~~~i~~lc~~~~Ip~~~~~sk~eLG~a~Gk~~~~svvaI~d~g 100 (117)
T TIGR03677 58 VAHLPALCEEKGIPYVYVKKKEDLGAAAGLEVGAASAAIVDEG 100 (117)
T ss_pred HHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEEEEchh
Confidence 4677888899999988888888888888876555 55555543
No 167
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=26.89 E-value=1.3e+02 Score=20.17 Aligned_cols=61 Identities=10% Similarity=0.079 Sum_probs=36.7
Q ss_pred CCcCHHHHHHHHHhCCCCCeEe-cCC-Cchhhhh--------cCCCceEEEEeecCChhH-HHHHHHHHHhhcC
Q 031686 24 VSFTISVIDDFISLNKIPPMIT-YSR-ETTPLIL--------NSPLKLLWLFAAVHDSEA-KSIFQETARAFKG 86 (155)
Q Consensus 24 g~~~~~~l~~fI~~~~~P~v~e-~~~-~~~~~i~--------~~~~~~v~lf~~~~~~~~-~~~~~~vA~~~~~ 86 (155)
+..+..+-..|+.....|-+.. +|. +...+.. ..+.+++++..+.. .. ...+.+++..|+.
T Consensus 15 ~~Vs~~ew~~Fld~~VTPRFpdGlTv~Da~GqW~~~~~g~~~rE~Skvv~i~~~~~--~~~~~~i~~Ir~~Yk~ 86 (104)
T PF12098_consen 15 GAVSEAEWQAFLDDEVTPRFPDGLTVLDAYGQWRDRATGRLIRERSKVVIIVHPDT--PAAEARIEAIREAYKQ 86 (104)
T ss_pred CcCCHHHHHHHHhCeeccCCCCCceEEeccceEecCCCCcEeecccEEEEEEeCCC--hHHHHHHHHHHHHHHH
Confidence 3678999999999999888765 443 2222222 23334455555433 23 5566667766653
No 168
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=26.54 E-value=2e+02 Score=19.14 Aligned_cols=43 Identities=12% Similarity=0.080 Sum_probs=28.9
Q ss_pred CCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCceEEEEe
Q 031686 24 VSFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKLLWLFA 66 (155)
Q Consensus 24 g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~v~lf~ 66 (155)
++-+.+.|.++.+....|.+..+|.+.+...+..+...++...
T Consensus 44 s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~ 86 (104)
T PRK05583 44 SENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILGVK 86 (104)
T ss_pred CHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEEEe
Confidence 3445677777777778888777777777777777642344443
No 169
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=26.45 E-value=1e+02 Score=25.68 Aligned_cols=57 Identities=9% Similarity=-0.026 Sum_probs=39.3
Q ss_pred eeeeeeeeEEEeccC---CcCHHHHHHHHHhCCCCCeEecCCCchhhhh-cCCCceEEEEe
Q 031686 10 FIHALSVFCFIFSDV---SFTISVIDDFISLNKIPPMITYSRETTPLIL-NSPLKLLWLFA 66 (155)
Q Consensus 10 ~~~~~~~~~~~~y~g---~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~-~~~~~~v~lf~ 66 (155)
-+|+.++++...-+- -.....|.+|++++..|-+.-++...+-+.. +.+.-...+..
T Consensus 76 ~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR~lt~~iR~~G~~~g~i~~ 136 (382)
T CHL00197 76 KIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTRALTQHLRRFGTMNGCISN 136 (382)
T ss_pred CccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHHHHHHHHHhcCCceEEEEc
Confidence 478888877764432 2456799999999999999999876655444 44433344443
No 170
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=26.40 E-value=1.2e+02 Score=25.05 Aligned_cols=58 Identities=14% Similarity=0.095 Sum_probs=40.0
Q ss_pred ceeeeeeeeEEEeccC---CcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEe
Q 031686 9 RFIHALSVFCFIFSDV---SFTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFA 66 (155)
Q Consensus 9 ~~~~~~~~~~~~~y~g---~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~ 66 (155)
+-+|+.++++...-+. -.....|.+|++++..|-+..++...+-+.......+ ..+..
T Consensus 69 ~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR~lt~~iR~~G~~~~~i~~ 130 (358)
T TIGR01368 69 KGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTRALVKKIREKGTMKGVIST 130 (358)
T ss_pred cCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHHHHHHHHHhcCCeeEEEec
Confidence 4478888877764432 2456899999999999999999876655544444334 44443
No 171
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=26.15 E-value=55 Score=19.66 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=29.7
Q ss_pred CCcCHHHHHHHHHhCCCCCeEecCCCchhhhhcCC
Q 031686 24 VSFTISVIDDFISLNKIPPMITYSRETTPLILNSP 58 (155)
Q Consensus 24 g~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~ 58 (155)
.|...++|..|++.+..|...+++......+.++.
T Consensus 23 ePI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~~ 57 (64)
T PF09494_consen 23 EPINLEELHAWLKASGIGFDRKVDPSKLKEWLDSQ 57 (64)
T ss_pred CCccHHHHHHHHHHcCCCccceeCHHHHHHHHHHC
Confidence 47788999999999999999999988888877664
No 172
>PF05619 DUF787: Borrelia burgdorferi protein of unknown function (DUF787); InterPro: IPR008505 This entry consists of several hypothetical proteins of unknown function from Borrelia species. They may be proteinases as the majority contain a propeptide proteinase inhibitor domain which is associated with both serine and metallopeptidases.
Probab=26.00 E-value=2.3e+02 Score=22.97 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=23.0
Q ss_pred eEEEeccCCcCHHHHHHHHHhCCCCCeEecCC
Q 031686 17 FCFIFSDVSFTISVIDDFISLNKIPPMITYSR 48 (155)
Q Consensus 17 ~~~~~y~g~~~~~~l~~fI~~~~~P~v~e~~~ 48 (155)
.+...|.. +.++|++|++.++.|+|+-++.
T Consensus 96 ~~l~iYk~--~~k~ik~~lk~~~h~fvV~int 125 (362)
T PF05619_consen 96 ADLYIYKD--KIKEIKDYLKSNRHSFVVFINT 125 (362)
T ss_pred eEEEEEcC--CHHHHHHHHHhCCCcEEEEEec
Confidence 34445632 3699999999999999998875
No 173
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=3.4e+02 Score=21.56 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhcCceEEEEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeee-cCCCCCCHHHHHHHHHHHH
Q 031686 74 KSIFQETARAFKGKLLFVYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKY-VLNGELTLSNVKSFALDFL 147 (155)
Q Consensus 74 ~~~~~~vA~~~~~~i~F~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY-~~~~~~t~~~I~~Fi~~f~ 147 (155)
.-.|..+|.+|. +.+|.-||.++ .+......|++. .|+++.... +.+- .+. --++..|++=+..+.
T Consensus 40 aP~Fs~lankYp-~aVFlkVdVd~--c~~taa~~gV~a--mPTFiff~n--g~kid~~q-GAd~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 40 APIFSDLANKYP-GAVFLKVDVDE--CRGTAATNGVNA--MPTFIFFRN--GVKIDQIQ-GADASGLEEKVAKYA 106 (288)
T ss_pred hhHHHHhhhhCc-ccEEEEEeHHH--hhchhhhcCccc--CceEEEEec--CeEeeeec-CCCHHHHHHHHHHHh
Confidence 557889999995 47899999996 677788888874 799887764 2222 122 234555666555554
No 174
>cd00072 GYF GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte activity. Also present in other unrelated proteins (mainly unknown) derived from diverse eukaryotic species.
Probab=25.17 E-value=78 Score=18.61 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=18.1
Q ss_pred cCCcCHHHHHHHHHhCCCCCe
Q 031686 23 DVSFTISVIDDFISLNKIPPM 43 (155)
Q Consensus 23 ~g~~~~~~l~~fI~~~~~P~v 43 (155)
.|+++.+.+.+|.+..-++.=
T Consensus 14 qGPF~~~~M~~W~~~gyF~~~ 34 (57)
T cd00072 14 QGPFSASQMLQWYQAGYFPDG 34 (57)
T ss_pred cCCcCHHHHHHHHHCCCCCCC
Confidence 489999999999999988643
No 175
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=25.13 E-value=2.5e+02 Score=21.52 Aligned_cols=66 Identities=12% Similarity=0.152 Sum_probs=38.1
Q ss_pred cCCCchhhhhcCCCce-EEEEeecC--C-h----hH-HHHHHHHHHhhcCceEEEEEeCCCc-c-hhhhhhhhCCCC
Q 031686 46 YSRETTPLILNSPLKL-LWLFAAVH--D-S----EA-KSIFQETARAFKGKLLFVYSQIYPK-L-KGQIFDYFGVTC 111 (155)
Q Consensus 46 ~~~~~~~~i~~~~~~~-v~lf~~~~--~-~----~~-~~~~~~vA~~~~~~i~F~~vd~~~~-~-~~~~~~~~gl~~ 111 (155)
+++.+...+-+-+.|+ +.+|.+.+ . . .. .+.|++.++.-.+++.+-++|.+.. . ....++.+|+.+
T Consensus 12 LS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 12 LSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred CCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 3444444444555677 77777652 1 1 22 4445555555456899999998431 1 344456688875
No 176
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=25.08 E-value=88 Score=17.15 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.7
Q ss_pred cCCcCHHHHHHHHHhCCCCC
Q 031686 23 DVSFTISVIDDFISLNKIPP 42 (155)
Q Consensus 23 ~g~~~~~~l~~fI~~~~~P~ 42 (155)
.||++.++|.+.+....+..
T Consensus 11 ~GP~s~~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 11 QGPFSLEELRQLISSGEIDP 30 (45)
T ss_pred ECCcCHHHHHHHHHcCCCCC
Confidence 48999999999999886643
No 177
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=25.05 E-value=2.3e+02 Score=19.21 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.7
Q ss_pred eeecCCCCCCHHHHHHHHHHHHc
Q 031686 126 KKYVLNGELTLSNVKSFALDFLG 148 (155)
Q Consensus 126 ~kY~~~~~~t~~~I~~Fi~~f~~ 148 (155)
.||.+++++|..++..+|+..+.
T Consensus 43 ~KflVp~~~tv~~f~~~irk~l~ 65 (112)
T cd01611 43 KKYLVPSDLTVGQFVYIIRKRIQ 65 (112)
T ss_pred ceEEecCCCCHHHHHHHHHHHhC
Confidence 58988889999999999988774
No 178
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=24.93 E-value=1.4e+02 Score=16.94 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=29.9
Q ss_pred ceEEEEEeCCCcc--hhhhhhhhCCCCCCcceEEEEecCCCeeecCCCCCCHHHHHHHHH
Q 031686 87 KLLFVYSQIYPKL--KGQIFDYFGVTCYTSRVIAVASIRKRKKYVLNGELTLSNVKSFAL 144 (155)
Q Consensus 87 ~i~F~~vd~~~~~--~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~~~~~t~~~I~~Fi~ 144 (155)
.+.|..+|.+... .+.+.+.+|.. .+|++.+. ++. +.| .+++.|+++++
T Consensus 24 ~i~~~~vdi~~~~~~~~~~~~~~~~~--~vP~~~~~----~~~--~~g-~~~~~i~~~i~ 74 (74)
T TIGR02196 24 GIAFEEIDVEKDSAAREEVLKVLGQR--GVPVIVIG----HKI--IVG-FDPEKLDQLLE 74 (74)
T ss_pred CCeEEEEeccCCHHHHHHHHHHhCCC--cccEEEEC----CEE--Eee-CCHHHHHHHhC
Confidence 4777888776421 22345566764 48988763 233 223 57888888874
No 179
>PF02213 GYF: GYF domain; InterPro: IPR003169 The glycine-tyrosine-phenylalanine (GYF) domain is an around 60-amino acid domain which contains a conserved GP[YF]xxxx[MV]xxWxxx[GN]YF motif. It was identified in the human intracellular protein termed CD2 binding protein 2 (CD2BP2), which binds to a site containing two tandem PPPGHR segments within the cytoplasmic region of CD2. Binding experiments and mutational analyses have demonstrated the critical importance of the GYF tripeptide in ligand binding. A GYF domain is also found in several other eukaryotic proteins of unknown function []. It has been proposed that the GYF domain found in these proteins could also be involved in proline-rich sequence recognition []. Resolution of the structure of the CD2BP2 GYF domain by NMR spectroscopy revealed a compact domain with a beta-beta-alpha-beta-beta topology, where the single alpha-helix is tilted away from the twisted, anti-parallel beta-sheet. The conserved residues of the GYF domain create a contiguous patch of predominantly hydrophobic nature which forms an integral part of the ligand-binding site []. There is limited homology within the C-terminal 20-30 amino acids of various GYF domains, supporting the idea that this part of the domain is structurally but not functionally important [].; GO: 0005515 protein binding; PDB: 1SYX_F 1L2Z_A 1GYF_A 1WH2_A 3FMA_C 3K3V_A.
Probab=24.58 E-value=43 Score=19.53 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=18.1
Q ss_pred cCCcCHHHHHHHHHhCCCCCe
Q 031686 23 DVSFTISVIDDFISLNKIPPM 43 (155)
Q Consensus 23 ~g~~~~~~l~~fI~~~~~P~v 43 (155)
.||++..+|..|.+..-++.=
T Consensus 13 qGPf~~~~M~~W~~~gyF~~~ 33 (57)
T PF02213_consen 13 QGPFSSEQMQAWYKQGYFPDD 33 (57)
T ss_dssp EEEEEHHHHHHHHHTTSSTTT
T ss_pred CCCcCHHHHHHHHHCCCCCCC
Confidence 478999999999999988753
No 180
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=23.61 E-value=2.7e+02 Score=23.03 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=32.3
Q ss_pred EEEeCCCcchhhhhhhhCCCCCCcceEEEEecCCCeeecC-CCCCCHHHHHHHHHHHH
Q 031686 91 VYSQIYPKLKGQIFDYFGVTCYTSRVIAVASIRKRKKYVL-NGELTLSNVKSFALDFL 147 (155)
Q Consensus 91 ~~vd~~~~~~~~~~~~~gl~~~~~P~v~i~~~~~~~kY~~-~~~~t~~~I~~Fi~~f~ 147 (155)
++.|+.+ ..++..++.+.. +|.++|+|+..|++-.+ ++.+.++++.+=+++|.
T Consensus 136 V~~Dtse--g~~~~~Fy~~~~--~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi 189 (356)
T KOG1364|consen 136 VLDDTSE--GQPFSAFYHISS--LPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFI 189 (356)
T ss_pred EeeccCC--CCchhhheeccC--CceEEEECCchhhhhhhhccccCHHHHHHHHHHHH
Confidence 3444443 567777777753 89999999977765543 35566654333333333
No 181
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=22.85 E-value=98 Score=19.65 Aligned_cols=39 Identities=21% Similarity=0.417 Sum_probs=27.1
Q ss_pred eccCCceeeeeeeeEEEeccC--CcCHHHHHHHHHhCCCCC
Q 031686 4 SASNGRFIHALSVFCFIFSDV--SFTISVIDDFISLNKIPP 42 (155)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~y~g--~~~~~~l~~fI~~~~~P~ 42 (155)
++-+|+||--+|..+-..=.. .++.+.+..|+.+...|.
T Consensus 25 ~~RdGk~iE~lG~YnP~~~~~~i~l~~~ri~~Wl~~GAqps 65 (78)
T TIGR00002 25 SRRDGRYIEELGFYNPLTKESRVKLNVERIKYWLSKGAQPT 65 (78)
T ss_pred CCCCCCceeEeeeccCCCCCcEEEEcHHHHHHHHHCCCccC
Confidence 456889988888765432111 357888999999887774
No 182
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=22.76 E-value=1.9e+02 Score=22.88 Aligned_cols=58 Identities=12% Similarity=0.207 Sum_probs=36.7
Q ss_pred EeccCC-cCHHHHHHHHHhCCCCCeEecCCCchhhhhcCCCce-EEEEeecCChhHHHHHHHHHHhhcCceE
Q 031686 20 IFSDVS-FTISVIDDFISLNKIPPMITYSRETTPLILNSPLKL-LWLFAAVHDSEAKSIFQETARAFKGKLL 89 (155)
Q Consensus 20 ~~y~g~-~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~~~~~~~-v~lf~~~~~~~~~~~~~~vA~~~~~~i~ 89 (155)
..|.|. ...++|++||++-..=.+. ++. +..+ + +.++.+.+| .+.+++.|+++++.+.
T Consensus 5 v~y~GGvyKh~el~ElIEDlGG~IlQ----k~~---~q~e--V~l~~~vP~eD---i~~i~~~ak~l~Gt~~ 64 (268)
T PF04609_consen 5 VTYEGGVYKHDELKELIEDLGGYILQ----KHV---MQQE--VVLTLLVPKED---IELIKEKAKELRGTIS 64 (268)
T ss_pred EEEecCcccchhHHHHHHhcCCeEEE----eec---ccce--eeEEEeccHHH---HHHHHHHHHhhccEEE
Confidence 356664 5679999999998433332 221 2222 3 555555544 6789999999998754
No 183
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=22.65 E-value=95 Score=20.51 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=27.3
Q ss_pred eccCCceeeeeeeeEEEeccC--CcCHHHHHHHHHhCCCCC
Q 031686 4 SASNGRFIHALSVFCFIFSDV--SFTISVIDDFISLNKIPP 42 (155)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~y~g--~~~~~~l~~fI~~~~~P~ 42 (155)
+.-+||||-.+|..+-..=.. .++.+.+..||.+-..|.
T Consensus 26 ~~RdGk~iE~lG~YnP~~~~~~i~l~~eri~~Wl~~GAqpT 66 (94)
T PRK14524 26 KRRDGAYIESLGYYNPLKEPYEIKVDVERAVEWILKGAQPS 66 (94)
T ss_pred CCCCCCceeEeeecCCCCCCceEEEcHHHHHHHHHcCCccC
Confidence 356889988887665542112 357888999999887774
No 184
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=22.52 E-value=2.8e+02 Score=21.53 Aligned_cols=77 Identities=8% Similarity=-0.080 Sum_probs=38.0
Q ss_pred Eec-cC-CcCHHHHHHHHH-hCCCCCeEecCCCchhhhhc----CCCce-EEEEeecCChhHHHHHHHHHHhhcCceEEE
Q 031686 20 IFS-DV-SFTISVIDDFIS-LNKIPPMITYSRETTPLILN----SPLKL-LWLFAAVHDSEAKSIFQETARAFKGKLLFV 91 (155)
Q Consensus 20 ~~y-~g-~~~~~~l~~fI~-~~~~P~v~e~~~~~~~~i~~----~~~~~-v~lf~~~~~~~~~~~~~~vA~~~~~~i~F~ 91 (155)
..| +| +++.+++-+.++ ....|.-..-++..+.++|+ .+..- +++..+..=+...+....+|+.+ .+..+.
T Consensus 34 ~~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~iSs~LSgty~~a~~aa~~~-~~~~i~ 112 (280)
T PF02645_consen 34 KEYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVITISSGLSGTYNSARLAAKML-PDIKIH 112 (280)
T ss_dssp EEEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEES-TTT-THHHHHHHHHHHH-TTTEEE
T ss_pred eEEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEeCCcchhhHHHHHHHHHhhc-CcCEEE
Confidence 344 45 678888888884 44455545455544444444 35553 33333332112245566666666 344566
Q ss_pred EEeCCC
Q 031686 92 YSQIYP 97 (155)
Q Consensus 92 ~vd~~~ 97 (155)
.+|+..
T Consensus 113 ViDS~~ 118 (280)
T PF02645_consen 113 VIDSKS 118 (280)
T ss_dssp EEE-SS
T ss_pred EEeCCC
Confidence 666654
No 185
>smart00444 GYF Contains conserved Gly-Tyr-Phe residues. Proline-binding domain in CD2-binding protein. Contains conserved Gly-Tyr-Phe residues.
Probab=22.35 E-value=96 Score=18.14 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.7
Q ss_pred cCCcCHHHHHHHHHhCCCCCeE
Q 031686 23 DVSFTISVIDDFISLNKIPPMI 44 (155)
Q Consensus 23 ~g~~~~~~l~~fI~~~~~P~v~ 44 (155)
.|+++..++..|.++.-++.-.
T Consensus 13 qGPf~~~~M~~W~~~gyF~~~l 34 (56)
T smart00444 13 QGPFTASQMSQWYQAGYFPDSL 34 (56)
T ss_pred eCCcCHHHHHHHHHCCCCCCCe
Confidence 4899999999999999887533
No 186
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=20.49 E-value=74 Score=19.59 Aligned_cols=31 Identities=6% Similarity=0.021 Sum_probs=22.8
Q ss_pred CcCHHHHHHHHHhCCCCCeEecCCCchhhhh
Q 031686 25 SFTISVIDDFISLNKIPPMITYSRETTPLIL 55 (155)
Q Consensus 25 ~~~~~~l~~fI~~~~~P~v~e~~~~~~~~i~ 55 (155)
+.+.++|..|+++..-|-+.+.+.+.+..++
T Consensus 29 ~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 29 EVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred ccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4578889999998888877777766555443
No 187
>PF13490 zf-HC2: Putative zinc-finger; PDB: 2Z2S_F 2Q1Z_B 3HUG_T.
Probab=20.19 E-value=76 Score=16.28 Aligned_cols=16 Identities=19% Similarity=0.397 Sum_probs=8.3
Q ss_pred HHHHHHHHHHcCCCcc
Q 031686 138 NVKSFALDFLGDKLRN 153 (155)
Q Consensus 138 ~I~~Fi~~f~~Gkl~p 153 (155)
.+.+.+.+|++|.|.+
T Consensus 3 ~~~~~l~~y~dg~L~~ 18 (36)
T PF13490_consen 3 EVRELLSAYLDGELSP 18 (36)
T ss_dssp --HHHHHHHHCT-S-H
T ss_pred HHHHHHHHHHcCCCCH
Confidence 3556677777777654
Done!