Query 031687
Match_columns 155
No_of_seqs 97 out of 99
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 05:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031687.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031687hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1q90_R Cytochrome B6-F complex 99.8 3.6E-23 1.2E-27 137.1 -1.6 48 56-103 2-49 (49)
2 1vf5_D Rieske iron-sulfur prot 99.7 1E-18 3.6E-23 134.6 -2.6 91 52-142 2-92 (179)
3 1rfs_A Rieske protein; iron-su 98.5 2.2E-08 7.7E-13 74.7 2.0 51 92-142 1-51 (139)
4 3azc_A Cytochrome B6-F complex 97.3 5.8E-07 2E-11 67.6 0.0 42 101-142 4-45 (133)
5 2qjy_C Ubiquinol-cytochrome C 98.0 8.4E-07 2.9E-11 69.3 -0.6 43 60-102 6-48 (187)
6 3cx5_E Cytochrome B-C1 complex 97.4 2.6E-05 9E-10 60.9 0.3 74 60-143 17-90 (185)
7 1pp9_E Ubiquinol-cytochrome C 94.3 0.0019 6.4E-08 51.1 -3.5 36 60-95 27-65 (196)
8 4aay_B AROB; oxidoreductase, r 61.2 1.7 5.9E-05 33.5 0.0 32 62-95 9-40 (175)
9 2pq4_B Periplasmic nitrate red 60.3 2.6 8.9E-05 25.5 0.7 17 62-78 2-18 (35)
10 2li3_A Potassium channel toxin 37.1 4.5 0.00015 24.4 -0.9 9 143-151 20-28 (30)
11 3ner_A Cytochrome B5 type B; h 36.1 11 0.00039 26.1 0.9 34 110-143 31-64 (92)
12 2ibj_A Cytochrome B5, CYTB5; F 33.4 9.9 0.00034 25.8 0.2 34 110-143 28-61 (88)
13 1cxy_A Cytochrome B5; helix, b 32.7 16 0.00055 24.9 1.2 33 111-143 30-62 (90)
14 1cyo_A Cytochrome B5; electron 32.3 11 0.00038 26.1 0.3 34 110-143 26-59 (93)
15 2w0y_A APH, alkaline phosphata 32.2 9.5 0.00033 34.2 0.0 22 58-79 7-28 (473)
16 1x3x_A Cytochrome B5; hemoprot 30.3 19 0.00066 24.0 1.3 31 110-141 25-55 (82)
17 1p5s_A RAS GTPase-activating-l 30.2 11 0.00037 29.8 0.0 16 94-109 2-17 (203)
18 3tc2_A Kunitz-type proteinase 29.1 26 0.00089 27.2 2.0 17 89-105 21-37 (187)
19 1hko_A Cytochrome B5; electron 28.4 12 0.00042 26.6 -0.0 34 110-143 30-63 (104)
20 1mj4_A Sulfite oxidase; cytoch 23.6 21 0.00072 23.9 0.5 28 110-137 27-54 (82)
21 3lf5_A Cytochrome B5 reductase 23.3 14 0.0005 25.3 -0.4 34 110-143 27-60 (88)
22 2keo_A Probable E3 ubiquitin-p 22.9 20 0.00067 26.1 0.2 29 111-139 46-74 (112)
23 3c75_L Methylamine dehydrogena 21.0 20 0.0007 29.1 0.0 28 63-91 22-49 (188)
24 3s8k_A Latex serine proteinase 20.4 39 0.0013 26.3 1.5 18 89-106 19-36 (184)
25 2di7_A BK158_1; beta-sandwich, 20.2 41 0.0014 24.6 1.5 41 104-144 40-89 (124)
No 1
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=99.84 E-value=3.6e-23 Score=137.13 Aligned_cols=48 Identities=46% Similarity=0.921 Sum_probs=38.2
Q ss_pred CCCCCCCchhHHHHHHHhhhccccccceeccceEEEeecCCCCCCCCc
Q 031687 56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGG 103 (155)
Q Consensus 56 ~~~~vPDM~RRqlMNlLl~Gava~~a~g~LyP~v~fFVPP~sgGggGG 103 (155)
++++||||+||||||+|++|++++++++++|||++|||||++||+|||
T Consensus 2 ~~~~~pdm~RRqfln~l~~G~~a~~a~~~~~P~v~ffvpP~~gg~ggg 49 (49)
T 1q90_R 2 ASSEVPDMNKRNIMNLILAGGAGLPITTLALGYGAFFVPPSSGGGGGG 49 (49)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--------
T ss_pred CcccCCChHHHHHHHHHHHHHHHHHHHHHHHhhheeecCCccCCCCCC
Confidence 467899999999999999999999999999999999999999998886
No 2
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.68 E-value=1e-18 Score=134.62 Aligned_cols=91 Identities=43% Similarity=0.710 Sum_probs=77.7
Q ss_pred eccCCCCCCCCchhHHHHHHHhhhccccccceeccceEEEeecCCCCCCCCccccccccCCcchhhhhhccCCCCCchhh
Q 031687 52 ATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLT 131 (155)
Q Consensus 52 a~s~~~~~vPDM~RRqlMNlLl~Gava~~a~g~LyP~v~fFVPP~sgGggGGv~AKDalGNdI~as~wL~th~pGdR~Lv 131 (155)
+.+.+.+++|||+||+||+++++|++++.++++++|++++|.||.....+|+.+++|..|++|.+++|+.+.++|++.++
T Consensus 2 ~~~~~~~~~~~~~RR~Fl~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~ 81 (179)
T 1vf5_D 2 AQFTESMDVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLV 81 (179)
T ss_dssp ----------CCCCCTTSCTTHHHHHHHHHHHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEE
T ss_pred CcccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEE
Confidence 34566678999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred cccCCCceeee
Q 031687 132 EGLKVQINFFE 142 (155)
Q Consensus 132 qGLKGDpTYLi 142 (155)
++++|++.|++
T Consensus 82 ~~~~g~~~~lv 92 (179)
T 1vf5_D 82 QGLKGDPTYIV 92 (179)
T ss_dssp SCSSSSCEECC
T ss_pred eccCCCeEEEE
Confidence 99999999875
No 3
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=98.54 E-value=2.2e-08 Score=74.70 Aligned_cols=51 Identities=63% Similarity=1.101 Sum_probs=33.0
Q ss_pred eecCCCCCCCCccccccccCCcchhhhhhccCCCCCchhhcccCCCceeee
Q 031687 92 FAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKVQINFFE 142 (155)
Q Consensus 92 FVPP~sgGggGGv~AKDalGNdI~as~wL~th~pGdR~LvqGLKGDpTYLi 142 (155)
||||++|++|||++|+|+.||.|.+++|+++-++|.+..+.++.|++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv 51 (139)
T 1rfs_A 1 FVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLV 51 (139)
T ss_dssp ------------CBCBCTTSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEE
T ss_pred CcCCccCcccceEEeecCCCCEEEeehhHhhCCCCccEEEEecCCCeEEEE
Confidence 899999999999999999999999999999999998887776666665443
No 4
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=97.31 E-value=5.8e-07 Score=67.57 Aligned_cols=42 Identities=43% Similarity=0.741 Sum_probs=38.3
Q ss_pred CCccccccccCCcchhhhhhccCCCCCchhhcccCCCceeee
Q 031687 101 GGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKVQINFFE 142 (155)
Q Consensus 101 gGGv~AKDalGNdI~as~wL~th~pGdR~LvqGLKGDpTYLi 142 (155)
|||++|||+.||+|++++||+..++|++.+++.|-|++..++
T Consensus 4 ~~~~~~~~~~g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv 45 (133)
T 3azc_A 4 EGRAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVI 45 (133)
Confidence 689999999999999999999999999999998877776655
No 5
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=97.95 E-value=8.4e-07 Score=69.30 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHhhhccccccceeccceEEEeecCCCCCCCC
Q 031687 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGG 102 (155)
Q Consensus 60 vPDM~RRqlMNlLl~Gava~~a~g~LyP~v~fFVPP~sgGggG 102 (155)
..|++||+||++++++++++.++++++|+++|+.|+.+..+.+
T Consensus 6 ~~~~~RR~Fl~~~~~~~~~~~a~~~~~p~v~~~~p~~~~~a~~ 48 (187)
T 2qjy_C 6 DHAGTRRDFLYYATAGAGAVATGAAVWPLINQMNPSADVQALA 48 (187)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTTSCCC
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhcccc
Confidence 4689999999999999999999999999999999998876554
No 6
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=97.40 E-value=2.6e-05 Score=60.86 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=47.9
Q ss_pred CCCchhHHHHHHHhhhccccccceeccceEEEeecCCCCCCCCccccccccCCcchhhhhhccCCCCCchhhcccCCCce
Q 031687 60 VPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKVQIN 139 (155)
Q Consensus 60 vPDM~RRqlMNlLl~Gava~~a~g~LyP~v~fFVPP~sgGggGGv~AKDalGNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (155)
..+|+||+||++++++++++.+++++++++.|+.+.... ..+.| ...|.+. +.+-++|+...++ +.|.|.
T Consensus 17 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~a----~~~v~V~--~s~l~~G~~~~v~-~~g~pv 86 (185)
T 3cx5_E 17 NDADKGRSYAYFMVGAMGLLSSAGAKSTVETFISSMTAT---ADVLA----MAKVEVN--LAAIPLGKNVVVK-WQGKPV 86 (185)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC---GGGCC----CCCEEEE--GGGCCTTCEEEEE-ETTEEE
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcCCC---cchhc----cCcEEEE--HHHCCCCCeEEEE-ECCeEE
Confidence 468999999999999998888888888888777775332 12233 2233331 4555677765443 455555
Q ss_pred eeee
Q 031687 140 FFEN 143 (155)
Q Consensus 140 YLi~ 143 (155)
++++
T Consensus 87 ~v~r 90 (185)
T 3cx5_E 87 FIRH 90 (185)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 7
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=94.34 E-value=0.0019 Score=51.08 Aligned_cols=36 Identities=3% Similarity=-0.000 Sum_probs=25.7
Q ss_pred CCCchhHHHHHHHhhhccccccc---eeccceEEEeecC
Q 031687 60 VPDMGKRQLMNLLLLGAVSLPTG---FMLVPYATFFAPP 95 (155)
Q Consensus 60 vPDM~RRqlMNlLl~Gava~~a~---g~LyP~v~fFVPP 95 (155)
-.|++||.||++++++++++.++ .+++|++.++-|.
T Consensus 27 ~~~~~RR~fl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 65 (196)
T 1pp9_E 27 ESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSAS 65 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 34789999999998876664444 4677777766553
No 8
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=61.23 E-value=1.7 Score=33.50 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=0.0
Q ss_pred CchhHHHHHHHhhhccccccceeccceEEEeecC
Q 031687 62 DMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPP 95 (155)
Q Consensus 62 DM~RRqlMNlLl~Gava~~a~g~LyP~v~fFVPP 95 (155)
.++|||||- ...+++++.+.+. .|...+..++
T Consensus 9 ~~~rr~fl~-~~~~a~~~~~~~~-~~~~~~~~~~ 40 (175)
T 4aay_B 9 DIGRRQFLR-GGALAAAGATAAV-FGVGAPQARA 40 (175)
T ss_dssp ----------------------------------
T ss_pred cccHHHHhh-hhHHhhhheeEec-cccccccccc
Confidence 899999999 3334443333333 5554444443
No 9
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=60.33 E-value=2.6 Score=25.50 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=11.9
Q ss_pred CchhHHHHHHHhhhccc
Q 031687 62 DMGKRQLMNLLLLGAVS 78 (155)
Q Consensus 62 DM~RRqlMNlLl~Gava 78 (155)
.|+||+||..-..++++
T Consensus 2 ~lsRR~FLK~~aaa~Aa 18 (35)
T 2pq4_B 2 KLSRRSFMKANAVAAAA 18 (35)
T ss_dssp CCCSHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 47899999965544443
No 10
>2li3_A Potassium channel toxin kappa-KTX3.1; alpha/alpha motif, alpha scorpion toxin, voltage gated potas channel alpha toxin; NMR {Tityus trivittatus} PDB: 2lka_A 2lo7_A
Probab=37.07 E-value=4.5 Score=24.41 Aligned_cols=9 Identities=44% Similarity=1.394 Sum_probs=7.6
Q ss_pred eeheeheec
Q 031687 143 NYCLVHCKL 151 (155)
Q Consensus 143 ~~~~~~~~~ 151 (155)
|||+-|||-
T Consensus 20 ~yclknckc 28 (30)
T 2li3_A 20 DYCLKNCRC 28 (30)
T ss_dssp HHHHHHSCC
T ss_pred HHHHhcCcC
Confidence 899999984
No 11
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=36.09 E-value=11 Score=26.06 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=25.0
Q ss_pred cCCcchhhhhhccCCCCCchhhcccCCCceeeee
Q 031687 110 IGNDIIAADWLNTHGPGDRTLTEGLKVQINFFEN 143 (155)
Q Consensus 110 lGNdI~as~wL~th~pGdR~LvqGLKGDpTYLi~ 143 (155)
.|+...+++|+..||-|...|.+---.|.|-..+
T Consensus 31 ~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~ 64 (92)
T 3ner_A 31 HGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFE 64 (92)
T ss_dssp TTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHH
T ss_pred CCEEEEcccccccCCCHHHHHHHhcCCcchHHHH
Confidence 3666678889999988887776655567876654
No 12
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=33.36 E-value=9.9 Score=25.77 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=23.7
Q ss_pred cCCcchhhhhhccCCCCCchhhcccCCCceeeee
Q 031687 110 IGNDIIAADWLNTHGPGDRTLTEGLKVQINFFEN 143 (155)
Q Consensus 110 lGNdI~as~wL~th~pGdR~LvqGLKGDpTYLi~ 143 (155)
.|+.-.+++|+..||-|...|.+---.|.|-..+
T Consensus 28 ~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~ 61 (88)
T 2ibj_A 28 HNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFE 61 (88)
T ss_dssp TTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHH
T ss_pred CCEEEECCcchhhCcCHHHHHHHhCCCcchHHHH
Confidence 3666678899999988877776554457775443
No 13
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=32.72 E-value=16 Score=24.95 Aligned_cols=33 Identities=6% Similarity=-0.140 Sum_probs=23.9
Q ss_pred CCcchhhhhhccCCCCCchhhcccCCCceeeee
Q 031687 111 GNDIIAADWLNTHGPGDRTLTEGLKVQINFFEN 143 (155)
Q Consensus 111 GNdI~as~wL~th~pGdR~LvqGLKGDpTYLi~ 143 (155)
|+.-.+++|+..||-|...|.+---.|.|=..+
T Consensus 30 g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~ 62 (90)
T 1cxy_A 30 GKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWE 62 (90)
T ss_dssp TEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHH
T ss_pred CEEEECccchhhCcChHHHHHHHCCcchhHHHh
Confidence 556678899999988877776655567775444
No 14
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=32.30 E-value=11 Score=26.06 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=24.4
Q ss_pred cCCcchhhhhhccCCCCCchhhcccCCCceeeee
Q 031687 110 IGNDIIAADWLNTHGPGDRTLTEGLKVQINFFEN 143 (155)
Q Consensus 110 lGNdI~as~wL~th~pGdR~LvqGLKGDpTYLi~ 143 (155)
.|+...+++|+..||-|...|.+---.|.|-..+
T Consensus 26 ~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~ 59 (93)
T 1cyo_A 26 HYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE 59 (93)
T ss_dssp TTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHH
T ss_pred CCEEEECCCcchhCcChHHHHHHhcCccchHHHH
Confidence 3566678899999998887776655567775544
No 15
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A {Halobacterium salinarum R1} PDB: 2x98_A
Probab=32.23 E-value=9.5 Score=34.17 Aligned_cols=22 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCCchhHHHHHHHhhhcccc
Q 031687 58 DRVPDMGKRQLMNLLLLGAVSL 79 (155)
Q Consensus 58 ~~vPDM~RRqlMNlLl~Gava~ 79 (155)
-+.|+|.||.||--..++++..
T Consensus 7 ~~~~~~~rr~~~~~~~~~~~~~ 28 (473)
T 2w0y_A 7 TESPSVDRRTFLAGLSGAVAGG 28 (473)
T ss_dssp ----------------------
T ss_pred CCCCCchHHHHhcccchhhhcc
Confidence 3689999999998776544433
No 16
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=30.26 E-value=19 Score=24.05 Aligned_cols=31 Identities=10% Similarity=0.078 Sum_probs=22.4
Q ss_pred cCCcchhhhhhccCCCCCchhhcccCCCceee
Q 031687 110 IGNDIIAADWLNTHGPGDRTLTEGLKVQINFF 141 (155)
Q Consensus 110 lGNdI~as~wL~th~pGdR~LvqGLKGDpTYL 141 (155)
.|+.-.+++|+..||-| ..|.+---.|.|=.
T Consensus 25 ~g~VYDvT~f~~~HPGG-~~i~~~aG~D~T~~ 55 (82)
T 1x3x_A 25 DGEVHDMTSFYKEHPGG-KVILNKAGQDATSV 55 (82)
T ss_dssp TTEEEECGGGGGGCTTG-GGGGGGTTSBCHHH
T ss_pred CCEEEECCcchhhCcCh-hhhhhhCCCCCchh
Confidence 35666788999999988 77666555677744
No 17
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=30.24 E-value=11 Score=29.76 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=0.0
Q ss_pred cCCCCCCCCccccccc
Q 031687 94 PPGLGSAGGGTTAKDA 109 (155)
Q Consensus 94 PP~sgGggGGv~AKDa 109 (155)
||++.||||||++.--
T Consensus 2 ~~~~~~~~~~~~~~~~ 17 (203)
T 1p5s_A 2 SPGISGGGGGILMDVN 17 (203)
T ss_dssp ----------------
T ss_pred CCCcCCCCCceeeech
Confidence 7888899999987543
No 18
>3tc2_A Kunitz-type proteinase inhibitor P1H5; beta-trefoil fold, protease inhibitor, hydrolase inhibitor; 1.60A {Solanum tuberosum}
Probab=29.13 E-value=26 Score=27.21 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=11.4
Q ss_pred EEEeecCCCCCCCCccc
Q 031687 89 ATFFAPPGLGSAGGGTT 105 (155)
Q Consensus 89 v~fFVPP~sgGggGGv~ 105 (155)
-+|++|...|.||||+.
T Consensus 21 ~YyI~p~~~g~gGGgl~ 37 (187)
T 3tc2_A 21 SYRIISTFWGALGGDVY 37 (187)
T ss_dssp CEEEECSCCGGGCCCEE
T ss_pred CEEEEEcccCCCCCeEE
Confidence 35777877776667673
No 19
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=28.36 E-value=12 Score=26.59 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=24.6
Q ss_pred cCCcchhhhhhccCCCCCchhhcccCCCceeeee
Q 031687 110 IGNDIIAADWLNTHGPGDRTLTEGLKVQINFFEN 143 (155)
Q Consensus 110 lGNdI~as~wL~th~pGdR~LvqGLKGDpTYLi~ 143 (155)
.|+...+++||..||-|...|.+---.|.|=..+
T Consensus 30 ~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~ 63 (104)
T 1hko_A 30 HYKVYDLTKFLEEHPGGEEVLREQAGGDATENFE 63 (104)
T ss_dssp TTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHT
T ss_pred CCEEEECCcchhhCcChHHHHHHhcCccchHHHH
Confidence 3666778899999999888776655557775544
No 20
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=23.56 E-value=21 Score=23.95 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=19.9
Q ss_pred cCCcchhhhhhccCCCCCchhhcccCCC
Q 031687 110 IGNDIIAADWLNTHGPGDRTLTEGLKVQ 137 (155)
Q Consensus 110 lGNdI~as~wL~th~pGdR~LvqGLKGD 137 (155)
.|+.-.+++|+..||-|...|.+..-.|
T Consensus 27 ~g~VYDvt~f~~~HPGG~~~il~~aG~D 54 (82)
T 1mj4_A 27 GSEVFDVTEFVDLHPGGPSKLMLAAGGP 54 (82)
T ss_dssp TTEEEECTTTGGGSTTCHHHHHTTTTSB
T ss_pred CCEEEEchHHHHhCCCHhHHHHHHcCCC
Confidence 3566678899999998866676544445
No 21
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=23.35 E-value=14 Score=25.33 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=23.9
Q ss_pred cCCcchhhhhhccCCCCCchhhcccCCCceeeee
Q 031687 110 IGNDIIAADWLNTHGPGDRTLTEGLKVQINFFEN 143 (155)
Q Consensus 110 lGNdI~as~wL~th~pGdR~LvqGLKGDpTYLi~ 143 (155)
.|+.-.+++|+..||-|...|.+---.|.|-..+
T Consensus 27 ~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~ 60 (88)
T 3lf5_A 27 RGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFD 60 (88)
T ss_dssp TTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHH
T ss_pred CCEEEECccchhhCcChhhhhhhcCCCcchHHHH
Confidence 3666778899999988877666554457776543
No 22
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=22.94 E-value=20 Score=26.06 Aligned_cols=29 Identities=10% Similarity=-0.054 Sum_probs=14.7
Q ss_pred CCcchhhhhhccCCCCCchhhcccCCCce
Q 031687 111 GNDIIAADWLNTHGPGDRTLTEGLKVQIN 139 (155)
Q Consensus 111 GNdI~as~wL~th~pGdR~LvqGLKGDpT 139 (155)
|+...+++|+..||-|...|.+---.|+|
T Consensus 46 G~VYDVT~fl~~HPGG~~~l~~~aGkDaT 74 (112)
T 2keo_A 46 GKVYDIKDFQTQSLTENSILAQFAGEDPV 74 (112)
T ss_dssp TEEEEHHHHHHHHTSTTSTTGGGTTSCHH
T ss_pred CEEEECCcchhhCCCchhhhhhhCCccch
Confidence 34445556666565555554443334444
No 23
>3c75_L Methylamine dehydrogenase light chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=20.96 E-value=20 Score=29.10 Aligned_cols=28 Identities=14% Similarity=0.069 Sum_probs=0.0
Q ss_pred chhHHHHHHHhhhccccccceeccceEEE
Q 031687 63 MGKRQLMNLLLLGAVSLPTGFMLVPYATF 91 (155)
Q Consensus 63 M~RRqlMNlLl~Gava~~a~g~LyP~v~f 91 (155)
-+||.||..| ++++++.++.-|.||.+=
T Consensus 22 tsRRs~l~~l-G~~l~g~a~~PlLPV~R~ 49 (188)
T 3c75_L 22 TSRRGAIGRL-GTVLAGAALVPLLPVDRR 49 (188)
T ss_dssp -----------------------------
T ss_pred cchHHHHHHH-HHHHhhhhhccccccccc
Confidence 4799999987 555555555566666654
No 24
>3s8k_A Latex serine proteinase inhibitor; kunitz-STI fold, protease inhibitor, hydrolase inhibitor; HET: NAG FUC; 1.70A {Carica papaya} PDB: 3s8j_A*
Probab=20.36 E-value=39 Score=26.33 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=12.3
Q ss_pred EEEeecCCCCCCCCcccc
Q 031687 89 ATFFAPPGLGSAGGGTTA 106 (155)
Q Consensus 89 v~fFVPP~sgGggGGv~A 106 (155)
-+|++|...|.+|||+..
T Consensus 19 ~YyI~p~~~g~gGGGl~l 36 (184)
T 3s8k_A 19 DYFVVSAIWGAGGGGLTV 36 (184)
T ss_dssp CEEEEESSCGGGCCEEEE
T ss_pred cEEEEEcccCCCCCeEEE
Confidence 367778777766777754
No 25
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.21 E-value=41 Score=24.57 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=24.6
Q ss_pred cccccccCCcchhh---hh---hccCCCCC--chhhccc-CCCceeeeee
Q 031687 104 TTAKDAIGNDIIAA---DW---LNTHGPGD--RTLTEGL-KVQINFFENY 144 (155)
Q Consensus 104 v~AKDalGNdI~as---~w---L~th~pGd--R~LvqGL-KGDpTYLi~~ 144 (155)
|.|+|+.|+.+..+ +- .-.|+.++ |.=+|=+ .+|=||+|.|
T Consensus 40 Iq~~D~~G~~~t~g~g~~~f~V~I~~~~~~~~~i~~~v~Dn~DGsy~v~Y 89 (124)
T 2di7_A 40 IQAVDTSGNKFTSSPGEKVFQVKVSAPEEQFTRVGVQVLDRKDGSFIVRY 89 (124)
T ss_dssp CCCEETTSCBCCSCCCSSCCEEEEECSSCCCCCCCCEEECCSSSCCEEEC
T ss_pred EEEEeCCCCEeeeCCCCCceEEEEecCCCCceEeeeEEEECCCCeEEEEE
Confidence 46888888887663 11 22445553 2222222 3888999999
Done!