BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031689
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PIE|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
           E178q Mutant
 pdb|3PIE|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
           E178q Mutant
 pdb|3PIE|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
           E178q Mutant
 pdb|3PIE|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
           E178q Mutant
 pdb|3PIF|A Chain A, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
           E178q Mutant In Complex With Manganese
 pdb|3PIF|B Chain B, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
           E178q Mutant In Complex With Manganese
 pdb|3PIF|C Chain C, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
           E178q Mutant In Complex With Manganese
 pdb|3PIF|D Chain D, Crystal Structure Of The 5'->3' Exoribonuclease Xrn1,
           E178q Mutant In Complex With Manganese
          Length = 1155

 Score = 30.4 bits (67), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 33  LKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQ 92
           LKE+ E   N   G  W L+  YR   S  +    H  P I  + KG D NI       Q
Sbjct: 510 LKEMTE---NYVGGLQWVLYYYYRGCPSWSWYYRYHYAPRISDVIKGIDQNIEFHKG--Q 564

Query: 93  VTPKRHGVMDVEPKEESSLVALFYN-IQINEVRPVFDVYLPN 133
                  +M V P+   +L+ + Y  +  +E  P+ D Y PN
Sbjct: 565 PFKPFQQLMAVLPERSKNLIPVVYRPLMYDEHSPILDFY-PN 605


>pdb|3IG3|A Chain A, Crystal Strucure Of Mouse Plexin A3 Intracellular Domain
          Length = 627

 Score = 27.3 bits (59), Expect = 3.6,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 135 KFKKSCPGDPSFLLYLTCK 153
           KF K C G+P FLLY   K
Sbjct: 182 KFLKECAGEPLFLLYCAIK 200


>pdb|3RYT|A Chain A, The Plexin A1 Intracellular Region In Complex With Rac1
 pdb|3RYT|B Chain B, The Plexin A1 Intracellular Region In Complex With Rac1
          Length = 626

 Score = 26.6 bits (57), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 135 KFKKSCPGDPSFLLYLTCK 153
           KF K C G+P F+LY   K
Sbjct: 181 KFLKECAGEPLFMLYCAIK 199


>pdb|1Y6Z|A Chain A, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
           Protein Pf14_0417
 pdb|1Y6Z|B Chain B, Middle Domain Of Plasmodium Falciparum Putative Heat Shock
           Protein Pf14_0417
          Length = 263

 Score = 26.2 bits (56), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 100 VMDVEPKEESSLVALFYNIQINEVRPVFDVYLPNRKFKKSC 140
           V D E +EE + +  FY+I   + +   D Y+ N K  + C
Sbjct: 163 VEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKC 203


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.142    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,828,303
Number of Sequences: 62578
Number of extensions: 193130
Number of successful extensions: 474
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 8
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)