BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031690
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LKX|A Chain A, Human Nac Dimerization Domain
          Length = 66

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)

Query: 38  VNAIPAIEEVNIFKD-DVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGP 96
           VN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG 
Sbjct: 1   VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGA 60

Query: 97  DNLDNL 102
           D+L +L
Sbjct: 61  DSLTSL 66


>pdb|3MCB|B Chain B, Crystal Structure Of Nac Domains Of Human Nascent
          Polypeptide- Associated Complex (Nac)
          Length = 58

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 44/58 (75%), Gaps = 1/58 (1%)

Query: 38 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 94
          VN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQL
Sbjct: 1  VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 58


>pdb|3BE4|A Chain A, Crystal Structure Of Cryptosporidium Parvum Adenylate
           Kinase Cgd5_3360
          Length = 217

 Score = 34.7 bits (78), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 35  RIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 94
           +IG+ A   IE  N   D++V+  +  K    +  N +V+ G P+T    + L  I++++
Sbjct: 49  KIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEI 108

Query: 95  G 95
           G
Sbjct: 109 G 109


>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The
          Eukaryotic Initiation Factor 5 (Eif5)
          Length = 170

 Score = 28.5 bits (62), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 59 LNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 94
          L  + Q  +  + ++V+G+ +  KLQD+L G I + 
Sbjct: 61 LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKF 96


>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human
           Eukaryotic Translation Initiation Factor 5
          Length = 157

 Score = 28.1 bits (61), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 59  LNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 94
           L  + Q  +  + ++V+G+ +  KLQD+L G I + 
Sbjct: 68  LGAQTQFDVKNDRYIVNGSHEANKLQDMLDGFIKKF 103


>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
            Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
            Acyl Carrier Protein At 3.1 Angstrom Resolution
 pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
            Acyl Carrier Protein At 3.1 Angstrom Resolution
          Length = 1887

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 7/43 (16%)

Query: 68   AANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 110
            AA  W+++GA     LQ +  GII   G  N DN+ K+ EQF+
Sbjct: 1587 AAGAWMMNGA-----LQILNSGIIP--GNRNADNVDKILEQFE 1622


>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
            Synthase Type I Multienzyme Complex
 pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
            Synthase Type I Multienzyme Complex
 pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
            Synthase Type I Multienzyme Complex
 pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
 pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
          Length = 1887

 Score = 28.1 bits (61), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 7/43 (16%)

Query: 68   AANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 110
            AA  W+++GA     LQ +  GII   G  N DN+ K+ EQF+
Sbjct: 1587 AAGAWMMNGA-----LQILNSGIIP--GNRNADNVDKILEQFE 1622


>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
 pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
          Length = 1688

 Score = 27.3 bits (59), Expect = 3.2,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 7/43 (16%)

Query: 68   AANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 110
            AA  W+++GA     LQ +  GII   G  N DN+ K+ EQF+
Sbjct: 1388 AAGAWMMNGA-----LQILNSGIIP--GNRNADNVDKILEQFE 1423


>pdb|3FB4|A Chain A, Crystal Structure Of Adenylate Kinase From Marinibacillus
           Marinus
          Length = 216

 Score = 26.9 bits (58), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/79 (21%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 36  IGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLG 95
           +G+ A   +++ N+  D+V I  ++ ++        +++ G P+T    D L  ++  LG
Sbjct: 45  LGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLG 104

Query: 96  P--DNLDNLRKLAEQFQKQ 112
              D + N++   E+  K+
Sbjct: 105 KKLDYVLNIKVEQEELMKR 123


>pdb|2ZRR|A Chain A, Crystal Structure Of An Immunity Protein That Contributes
           To The Self-Protection Of Bacteriocin-Producing
           Enterococcus Mundtii 15-1a
          Length = 118

 Score = 25.8 bits (55), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 72  WVVSGAPQTKKLQDILPGIINQLGPD-NLDNLRKLAEQFQKQAPNAGTGAP 121
           W   G  + KK + I+  +++ L  D   ++LRK+   + K+  N GT  P
Sbjct: 26  WFSGGDDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKNEGTSVP 76


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,997,926
Number of Sequences: 62578
Number of extensions: 150667
Number of successful extensions: 270
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 22
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)