Query 031690
Match_columns 155
No_of_seqs 128 out of 291
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 05:51:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lkx_A Transcription factor BT 100.0 2.8E-35 9.7E-40 203.5 6.2 65 38-102 1-66 (66)
2 3mcb_B Transcription factor BT 100.0 2.2E-31 7.4E-36 180.0 6.0 57 38-94 1-58 (58)
3 3mce_A Nascent polypeptide-ass 99.8 3.3E-21 1.1E-25 131.3 2.7 54 31-84 6-60 (61)
4 3mcb_A Nascent polypeptide-ass 99.8 5.7E-21 2E-25 127.3 3.8 52 32-83 1-53 (54)
5 1tr8_A Conserved protein (MTH1 99.6 4.8E-16 1.6E-20 114.8 3.6 53 31-83 2-58 (102)
6 1hym_A CMTI-V, hydrolyzed cucu 33.8 18 0.0006 22.5 1.4 24 129-153 8-32 (45)
7 1eej_A Thiol:disulfide interch 33.5 72 0.0025 24.0 5.2 25 25-49 1-32 (216)
8 1ylx_A Hypothetical protein AP 28.6 1.4E+02 0.0047 21.7 5.6 63 29-91 20-101 (103)
9 1cq4_A Protein (serine protein 27.8 21 0.0007 22.1 1.0 23 130-153 4-27 (47)
10 3j21_Y 50S ribosomal protein L 27.5 26 0.00089 26.7 1.7 56 23-88 13-69 (155)
11 3rdy_A BWI-1=protease inhibito 27.2 20 0.0007 24.6 1.0 24 129-153 18-42 (79)
12 1otr_A Protein CUE2; protein-p 23.3 14 0.0005 23.2 -0.4 14 78-91 6-19 (49)
13 4a17_V RPL7, 60S ribosomal pro 21.6 55 0.0019 26.7 2.7 56 23-88 90-146 (239)
14 2fpn_A YWMB; structural genomo 20.9 1.6E+02 0.0055 23.4 5.3 53 26-78 144-210 (216)
15 1vq8_W 50S ribosomal protein L 20.8 45 0.0015 25.4 1.9 55 24-88 12-67 (154)
16 4gwp_B Mediator of RNA polymer 20.2 22 0.00074 33.3 0.0 30 65-97 84-113 (687)
No 1
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=203.51 Aligned_cols=65 Identities=57% Similarity=0.911 Sum_probs=62.3
Q ss_pred CccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhhhhhhhhhhccchhhHHHH
Q 031690 38 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNL 102 (155)
Q Consensus 38 ~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~ellP~Il~QLG~d~l~~L 102 (155)
|++|+||+||||||+| +||||+|||||+|+++|||||||++++|+|+||||+||+|||||+|++|
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~ellP~Il~qlG~d~l~~l 66 (66)
T 3lkx_A 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSL 66 (66)
T ss_dssp CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGGGTTGGGGGCCTTHHHHC
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHHHChhhhhccChhhhhcC
Confidence 5789999999999999 9999999999999999999999999999999999999999999999875
No 2
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.97 E-value=2.2e-31 Score=180.00 Aligned_cols=57 Identities=58% Similarity=0.914 Sum_probs=55.8
Q ss_pred CccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhhhhhhhhhhcc
Q 031690 38 VNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQL 94 (155)
Q Consensus 38 ~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~ellP~Il~QL 94 (155)
+++|+||+||||||+| +||||+|||||||+++|||+|||++++|+|+||||+||+||
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e~lP~Il~ql 58 (58)
T 3mcb_B 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 58 (58)
T ss_dssp CCEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGGGTTGGGGGC
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHHHChhhhhcC
Confidence 5789999999999999 99999999999999999999999999999999999999997
No 3
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.82 E-value=3.3e-21 Score=131.31 Aligned_cols=54 Identities=22% Similarity=0.470 Sum_probs=48.9
Q ss_pred HHHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchhh
Q 031690 31 STLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQ 84 (155)
Q Consensus 31 ~~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~ 84 (155)
++|+|||+++|+||+||||||++ .+|||++|+||+|+++|||||||+++.++++
T Consensus 6 kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~ 60 (61)
T 3mce_A 6 PEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60 (61)
T ss_dssp CCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC
T ss_pred HHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCC
Confidence 56999999999999999999999 9999999999999999999999999999875
No 4
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.81 E-value=5.7e-21 Score=127.29 Aligned_cols=52 Identities=23% Similarity=0.494 Sum_probs=50.1
Q ss_pred HHhhhCCccCCCccceeeeecC-EEEEeeCCeeeeeecCCeEEEecccccchh
Q 031690 32 TLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKL 83 (155)
Q Consensus 32 ~LkKLg~~~I~gIeEVnmfk~d-~vihF~nPkVqaS~~aNT~vv~G~~e~K~l 83 (155)
+|+|||+++||||+||||||++ .+|||++|+||+|+++|||||||+++.+++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~ 53 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDL 53 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEEC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccC
Confidence 4899999999999999999999 999999999999999999999999999876
No 5
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=99.59 E-value=4.8e-16 Score=114.82 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=43.1
Q ss_pred HHHhhhCC--ccCCCccceeeeecCEEEEeeCCeeee--eecCCeEEEecccccchh
Q 031690 31 STLKRIGV--NAIPAIEEVNIFKDDVVIQFLNPKVQA--SIAANTWVVSGAPQTKKL 83 (155)
Q Consensus 31 ~~LkKLg~--~~I~gIeEVnmfk~d~vihF~nPkVqa--S~~aNT~vv~G~~e~K~l 83 (155)
.+|+|||+ ++|+||+||+|+++|.+|||++|+||+ |+++|||+|||+++++++
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~ 58 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKRKEIIIKNPKVNVMEFMGQKTYQVTGKARERSL 58 (102)
T ss_dssp --------CCEEECCCCEEEEECSSEEEEEESCEEEEEEETTEEEEEEESCEEEEEE
T ss_pred chHHHcCCCceeCCCcEEEEEEeCCEEEEECCCEEEEEcCCCCcEEEEEcCceeecc
Confidence 36999999 899999999999999999999999997 899999999999999876
No 6
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=33.80 E-value=18 Score=22.50 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=18.4
Q ss_pred CCcccCCCCCChhHHhhc-cccCCCC
Q 031690 129 DEVPELVAGETFEAAAEE-KTEKPDA 153 (155)
Q Consensus 129 ddVPdLV~genFee~sk~-e~~~~~~ 153 (155)
..-|+|| |.+.++|... +.+.||.
T Consensus 8 ~sWPELV-G~~~~~A~~~I~~e~P~v 32 (45)
T 1hym_A 8 SSWPHLV-GVGGSVAKAIIERQNPNV 32 (45)
T ss_dssp SBCCCCT-TSCHHHHHHHHHHHCTTC
T ss_pred CcChhhc-CCcHHHHHHHHHHHCCCC
Confidence 4689999 7888888765 6777764
No 7
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=33.46 E-value=72 Score=23.95 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=17.6
Q ss_pred ccHHHHHHHhhhCC-------ccCCCccceee
Q 031690 25 DDKRLQSTLKRIGV-------NAIPAIEEVNI 49 (155)
Q Consensus 25 DDKKLq~~LkKLg~-------~~I~gIeEVnm 49 (155)
|+..++.+|.++|+ .+++|+-||.+
T Consensus 1 ~~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~ 32 (216)
T 1eej_A 1 DDAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT 32 (216)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECSSTTEEEEEE
T ss_pred ChHHHHHHHHHcCCceeeeecCCCCCcEEEEE
Confidence 45678888888765 46777777665
No 8
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=28.56 E-value=1.4e+02 Score=21.66 Aligned_cols=63 Identities=27% Similarity=0.479 Sum_probs=44.1
Q ss_pred HHHHHhhhCCccCCCccc----------eeeeecCEEEEeeCCeeee-----eecCCeEEEecccccc----hhhhhhhh
Q 031690 29 LQSTLKRIGVNAIPAIEE----------VNIFKDDVVIQFLNPKVQA-----SIAANTWVVSGAPQTK----KLQDILPG 89 (155)
Q Consensus 29 Lq~~LkKLg~~~I~gIeE----------Vnmfk~d~vihF~nPkVqa-----S~~aNT~vv~G~~e~K----~l~ellP~ 89 (155)
+...|.+.|+..|+=-|| .++.|+|.+||+..|=++- ++..+-|.|-+.-.++ +|.+-|-.
T Consensus 20 ~~~~l~~Ygld~vgifEEeGegn~YY~GYTVkKdd~~~~ih~PfikdedG~La~ekqeWTi~~d~~e~~Gy~sle~Al~e 99 (103)
T 1ylx_A 20 LEPMMEAYGLDQVGIFEEHGEGNRYYVGYTINKDDEMITIHMPFVKNERGELALEKQEWTVRKDGREKKGFHSLQEAMEE 99 (103)
T ss_dssp HHHHHHHHTCSCEEEEEEECSTTEEEEEEEEEETTEEEEEEEEEEECTTSCEEECCSCEEEEETTEEEEEECSHHHHHHH
T ss_pred HHHHHHHhCCcceeeeeecCCCceEEEEEEEccCCeEEEEeccceecCCCceeeecceeEEecCCccccchhhHHHHHHH
Confidence 456677888887766665 4667778999999997763 5778889998876655 44444444
Q ss_pred hh
Q 031690 90 II 91 (155)
Q Consensus 90 Il 91 (155)
|+
T Consensus 100 ~i 101 (103)
T 1ylx_A 100 VI 101 (103)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 9
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=27.78 E-value=21 Score=22.06 Aligned_cols=23 Identities=48% Similarity=0.731 Sum_probs=16.6
Q ss_pred CcccCCCCCChhHHhhc-cccCCCC
Q 031690 130 EVPELVAGETFEAAAEE-KTEKPDA 153 (155)
Q Consensus 130 dVPdLV~genFee~sk~-e~~~~~~ 153 (155)
.-|+|| |.+.++|... +.+.|++
T Consensus 4 sWPELV-G~~~~~A~~~I~~e~p~v 27 (47)
T 1cq4_A 4 EWPELV-GKSVEEAKKVILQDKPEA 27 (47)
T ss_dssp BCGGGT-TSBHHHHHHHHHHHCTTC
T ss_pred CChhhc-CccHHHHHHHHHHHCCCC
Confidence 469999 7888877654 6666664
No 10
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.51 E-value=26 Score=26.72 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=43.2
Q ss_pred CcccHHHHHHHhhhCCccCCCccceeeeecCEEEEeeCCeeeeeec-CCeEEEecccccchhhhhhh
Q 031690 23 TTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIA-ANTWVVSGAPQTKKLQDILP 88 (155)
Q Consensus 23 ~~DDKKLq~~LkKLg~~~I~gIeEVnmfk~d~vihF~nPkVqaS~~-aNT~vv~G~~e~K~l~ellP 88 (155)
..--++.+.+|+-||+..|.- .|++=.+|.+..-+. -.-||..|++..+++.||+-
T Consensus 13 ig~~~~~r~tL~~LgL~ki~~----------~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~ 69 (155)
T 3j21_Y 13 VNVKRPVRDTLAMLRLHRVNH----------CVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIR 69 (155)
T ss_dssp TTCCHHHHHHHHHTTCCSTTE----------EEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcCCC----------EEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHH
Confidence 456788999999999987765 666777776655443 46789999999999999874
No 11
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=27.22 E-value=20 Score=24.63 Aligned_cols=24 Identities=46% Similarity=0.540 Sum_probs=18.2
Q ss_pred CCcccCCCCCChhHHhhc-cccCCCC
Q 031690 129 DEVPELVAGETFEAAAEE-KTEKPDA 153 (155)
Q Consensus 129 ddVPdLV~genFee~sk~-e~~~~~~ 153 (155)
..-|+|| |.++++|... +.+.|++
T Consensus 18 ~sWPELV-G~~~~~A~~~I~~e~P~v 42 (79)
T 3rdy_A 18 QEWPELV-GERGSKAAKIIENENEDV 42 (79)
T ss_dssp CBCGGGT-TSBHHHHHHHHHHHCTTC
T ss_pred CcChHHC-CcCHHHHHHHHHHHCCCC
Confidence 4789999 7999988644 6666664
No 12
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=23.29 E-value=14 Score=23.23 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=10.7
Q ss_pred cccchhhhhhhhhh
Q 031690 78 PQTKKLQDILPGII 91 (155)
Q Consensus 78 ~e~K~l~ellP~Il 91 (155)
.+.+.|.||||++=
T Consensus 6 ~~v~~L~EMFP~~~ 19 (49)
T 1otr_A 6 SKLSILMDMFPAIS 19 (49)
T ss_dssp HHHHHHHHHCSSSC
T ss_pred HHHHHHHHHCCCCC
Confidence 35568999999873
No 13
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=21.57 E-value=55 Score=26.74 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=40.9
Q ss_pred CcccHHHHHHHhhhCCccCCCccceeeeecCEEEEeeCCeeeeeec-CCeEEEecccccchhhhhhh
Q 031690 23 TTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIA-ANTWVVSGAPQTKKLQDILP 88 (155)
Q Consensus 23 ~~DDKKLq~~LkKLg~~~I~gIeEVnmfk~d~vihF~nPkVqaS~~-aNT~vv~G~~e~K~l~ellP 88 (155)
..--++.+.+|+.||+..|.. .|++=.+|.+..-+. -.-||..|.+..+++.+|+-
T Consensus 90 ig~~~~~rktL~~LgL~ki~~----------~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~ 146 (239)
T 4a17_V 90 NQLHPDVKRVLRLFRLRQLHN----------GAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIY 146 (239)
T ss_dssp SSCCHHHHHHHHHTTCCBTTE----------EEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCccCC----------eEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHH
Confidence 445788899999999988765 455555555444333 46799999999999999864
No 14
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=20.86 E-value=1.6e+02 Score=23.40 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=33.3
Q ss_pred cHHHHHHHhhhCCccCCCccceeeee-----cC--EEEEeeCC--eeeeeecC-----CeEEEeccc
Q 031690 26 DKRLQSTLKRIGVNAIPAIEEVNIFK-----DD--VVIQFLNP--KVQASIAA-----NTWVVSGAP 78 (155)
Q Consensus 26 DKKLq~~LkKLg~~~I~gIeEVnmfk-----~d--~vihF~nP--kVqaS~~a-----NT~vv~G~~ 78 (155)
++++...|++|+++.+.++.+.+|+- .. ..|....= -||.++.. .||+.-|.|
T Consensus 144 ~~~~~~~l~~l~A~~vE~~~e~~~vSiSaYs~~~~~~i~~~~~k~NlqvAlR~~~~~~kT~I~iGTP 210 (216)
T 2fpn_A 144 QKKANQLLNEFQARSVEHVVEPNFVSISAFTDEWEEYIMTSKHKMNLQIALRSAGMGGKHTVTVGTP 210 (216)
T ss_dssp HHHHHHHHHHHC---CCCCCBTTEEEEEECCTTSSCCEEETTEEECEEEEEEC------CEEEEESS
T ss_pred HHHHHHHHHHcCCeeeeeeccccEEEEEEEChhhhhHhhcCCeEEEEEEEEEecCCCCcEEEEEecc
Confidence 67888899999999999999999842 21 22333322 35666554 588888876
No 15
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Probab=20.85 E-value=45 Score=25.38 Aligned_cols=55 Identities=18% Similarity=0.328 Sum_probs=39.4
Q ss_pred cccHHHHHHHhhhCCccCCCccceeeeecCEEEEeeCCeeeeeec-CCeEEEecccccchhhhhhh
Q 031690 24 TDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIA-ANTWVVSGAPQTKKLQDILP 88 (155)
Q Consensus 24 ~DDKKLq~~LkKLg~~~I~gIeEVnmfk~d~vihF~nPkVqaS~~-aNT~vv~G~~e~K~l~ellP 88 (155)
.--++.+.+|+-||++.|.- .|++=.+|.+..-+. -.-||..|++..+++.+|+-
T Consensus 12 g~~~~~r~tL~~LgL~ki~~----------~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~ 67 (154)
T 1vq8_W 12 NMHTDIQDTLEMLNIHHVNH----------CTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLA 67 (154)
T ss_dssp TSCHHHHHHHHHTTCCSTTE----------EEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcCCC----------EEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHH
Confidence 34678899999999988754 455555665444332 45788999999999888753
No 16
>4gwp_B Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_B 3rj1_B
Probab=20.20 E-value=22 Score=33.30 Aligned_cols=30 Identities=30% Similarity=0.569 Sum_probs=0.0
Q ss_pred eeecCCeEEEecccccchhhhhhhhhhhccchh
Q 031690 65 ASIAANTWVVSGAPQTKKLQDILPGIINQLGPD 97 (155)
Q Consensus 65 aS~~aNT~vv~G~~e~K~l~ellP~Il~QLG~d 97 (155)
.|+-.|-|=|||. -+|.+|+|-||.|-||-
T Consensus 84 ~~l~~np~e~~g~---~pl~qlip~Il~eRg~~ 113 (687)
T 4gwp_B 84 DSLVSNPHEIYGS---MPLEQLIPIILRQRGPG 113 (687)
T ss_dssp ---------------------------------
T ss_pred cccccChHHHhCC---CcHHHHHHHHHHhhCCC
Confidence 4788899999996 58999999999999973
Done!