BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031691
         (155 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5T2D3|OTUD3_HUMAN OTU domain-containing protein 3 OS=Homo sapiens GN=OTUD3 PE=1 SV=1
          Length = 398

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 5   GTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE 64
           GT+AG+  + A +     N+ IH+  +P W IR  +    R +H++Y  GEHY+ VR   
Sbjct: 131 GTFAGNDAIVAFARNHQLNVVIHQLNAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRIN 190

Query: 65  DSCIGSARPIIIKADADISAASIQSKTVTSKLKG 98
           D+   S  P  ++ D  +      +K    K KG
Sbjct: 191 DN---SEAPAHLQTDFQMLHQDESNKREKIKTKG 221


>sp|Q9U505|AT5G_MANSE ATP synthase lipid-binding protein, mitochondrial OS=Manduca sexta
           PE=2 SV=1
          Length = 131

 Score = 30.4 bits (67), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 42  HEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKADADISAA-SIQSKTVTSKLKGAA 100
             AR+I  +       N   ++  + + +   ++  A A +SA  S Q+ +VT  +  AA
Sbjct: 3   SAARLIAPAARSAIFSNAAVVRPLAAVSTQTQLVPAAPAQLSAVRSFQTTSVTKDIDSAA 62

Query: 101 GIINAGSIKLVMAGSG 116
             I AG+  + +AGSG
Sbjct: 63  KFIGAGAATVGVAGSG 78


>sp|Q6IE21|OTU6A_MOUSE OTU domain-containing protein 6A OS=Mus musculus GN=Otud6a PE=2
           SV=1
          Length = 290

 Score = 30.4 bits (67), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 4   DGTWAGHMELQAASLVTHSNICIHRHMSPRWYI-RNFDYHEARMIHLSY--HDGEHYNGV 60
           + +W G +EL+A S V  + I + +  SP   I   +      +++L Y    GEHYN V
Sbjct: 214 NASWGGQLELRALSHVLQTPIEVVQANSPTIVIGEEYTRKPVTLVYLHYACDFGEHYNSV 273

Query: 61  R 61
           +
Sbjct: 274 K 274


>sp|Q7L8S5|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2
           SV=1
          Length = 288

 Score = 30.0 bits (66), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 7   WAGHMELQAASLVTHSNICIHRHMSPRWYI-RNFDYHEARMIHL--SYHDGEHYNGVRLK 63
           W G +EL+A S V  + I + +  SP   I   +      +++L  +Y  GEHYN V   
Sbjct: 216 WGGQLELRALSHVLKTPIEVIQADSPTLIIGEEYVKKPIILVYLRYAYSLGEHYNSVTPL 275

Query: 64  EDSCIGSARPIII 76
           E    G   P ++
Sbjct: 276 EAGAAGGVLPRLL 288


>sp|Q6NQ88|DDB2_ARATH Protein DAMAGED DNA-BINDING 2 OS=Arabidopsis thaliana GN=DDB2 PE=1
           SV=1
          Length = 557

 Score = 29.6 bits (65), Expect = 7.3,   Method: Composition-based stats.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 11/120 (9%)

Query: 9   GHMELQAASLVTHSNICIHRHMSP---RWYIRNFDYHEARMIHLSYHDGEHYNGVRLKED 65
           G+++L +  +V HSN   +RH++P    W  +  D  E+ +I +  +  E+YNG  L   
Sbjct: 390 GNLDLPSREIV-HSND-FNRHLTPFKAEWDPK--DTSES-LIVIGRYISENYNGTALHPI 444

Query: 66  SCIGSARPIIIKADADISAASIQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEE 125
             I ++   ++   A++   +I + T  +KL     ++ +GS + +      +N+E VEE
Sbjct: 445 DFIDASNGQLV---AEVMDPNITTITPVNKLHPRDDVLASGSSRSLFIWRPQDNTEMVEE 501


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,775,491
Number of Sequences: 539616
Number of extensions: 2042211
Number of successful extensions: 5711
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5704
Number of HSP's gapped (non-prelim): 23
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)