Query 031691
Match_columns 155
No_of_seqs 148 out of 407
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:01:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2606 OTU (ovarian tumor)-li 99.6 1.2E-15 2.7E-20 128.5 4.1 63 1-64 232-299 (302)
2 PF02338 OTU: OTU-like cystein 99.2 2.5E-11 5.5E-16 88.4 4.9 57 1-57 54-121 (121)
3 PF02845 CUE: CUE domain; Int 97.6 0.00016 3.4E-09 44.4 5.3 39 107-145 4-42 (42)
4 PF00627 UBA: UBA/TS-N domain; 97.5 0.00026 5.7E-09 42.2 4.2 35 105-141 3-37 (37)
5 COG5539 Predicted cysteine pro 97.4 0.00011 2.4E-09 62.6 2.8 58 1-61 243-305 (306)
6 PF14555 UBA_4: UBA-like domai 97.2 0.00062 1.3E-08 42.0 4.2 40 106-146 2-41 (43)
7 KOG2605 OTU (ovarian tumor)-li 97.2 0.00018 3.9E-09 63.3 2.5 63 1-63 278-344 (371)
8 KOG3288 OTU-like cysteine prot 97.1 0.00033 7.2E-09 59.1 2.4 73 2-75 173-246 (307)
9 smart00546 CUE Domain that may 97.0 0.0014 3E-08 40.2 4.5 38 107-144 5-42 (43)
10 TIGR00264 alpha-NAC-related pr 97.0 0.0012 2.5E-08 49.6 4.4 39 103-142 77-115 (116)
11 PRK06369 nac nascent polypepti 96.9 0.0016 3.4E-08 48.8 4.5 40 102-142 74-113 (115)
12 cd00194 UBA Ubiquitin Associat 96.9 0.0034 7.3E-08 37.1 4.9 34 107-142 4-37 (38)
13 smart00165 UBA Ubiquitin assoc 96.5 0.006 1.3E-07 35.8 4.1 33 108-142 5-37 (37)
14 PF10275 Peptidase_C65: Peptid 95.9 0.016 3.5E-07 47.4 5.3 55 6-61 182-243 (244)
15 PF06972 DUF1296: Protein of u 95.8 0.021 4.5E-07 38.1 4.4 39 107-145 8-46 (60)
16 COG1308 EGD2 Transcription fac 95.6 0.027 5.8E-07 42.6 5.0 41 101-142 81-121 (122)
17 PF03474 DMA: DMRTA motif; In 94.3 0.053 1.1E-06 33.3 2.9 27 116-142 13-39 (39)
18 TIGR00116 tsf translation elon 91.6 0.29 6.2E-06 41.9 4.5 39 105-144 5-43 (290)
19 PRK12332 tsf elongation factor 91.6 0.33 7.1E-06 39.4 4.6 39 105-144 5-43 (198)
20 PRK09377 tsf elongation factor 91.4 0.32 6.9E-06 41.7 4.6 40 104-144 5-44 (290)
21 TIGR00601 rad23 UV excision re 88.0 0.85 1.8E-05 40.4 4.6 37 105-143 157-193 (378)
22 KOG3991 Uncharacterized conser 87.5 0.87 1.9E-05 38.2 4.2 54 8-62 199-255 (256)
23 COG0264 Tsf Translation elonga 86.7 1.1 2.5E-05 38.5 4.6 38 105-143 6-43 (296)
24 KOG2605 OTU (ovarian tumor)-li 82.6 0.71 1.5E-05 40.9 1.6 141 1-146 115-256 (371)
25 PF02954 HTH_8: Bacterial regu 81.9 2.4 5.3E-05 25.5 3.3 23 119-141 6-28 (42)
26 KOG1071 Mitochondrial translat 81.8 2.4 5.2E-05 37.1 4.4 43 105-148 47-89 (340)
27 KOG0011 Nucleotide excision re 79.0 3 6.5E-05 36.6 4.2 37 105-143 136-172 (340)
28 PF08938 HBS1_N: HBS1 N-termin 78.8 1.2 2.5E-05 30.7 1.3 40 108-148 35-74 (79)
29 PF05861 PhnI: Bacterial phosp 76.1 5 0.00011 35.4 4.8 42 107-148 44-85 (358)
30 COG2103 Predicted sugar phosph 71.3 5.9 0.00013 34.1 3.9 36 106-142 235-270 (298)
31 PF11547 E3_UbLigase_EDD: E3 u 70.9 18 0.00039 23.4 5.1 42 105-146 10-51 (53)
32 PRK05441 murQ N-acetylmuramic 70.6 6.4 0.00014 33.5 4.1 37 106-143 237-273 (299)
33 PF11626 Rap1_C: TRF2-interact 69.3 7.9 0.00017 27.0 3.7 33 112-145 4-36 (87)
34 KOG2239 Transcription factor c 67.0 7.5 0.00016 31.9 3.5 36 105-141 172-207 (209)
35 TIGR00274 N-acetylmuramic acid 66.7 8.9 0.00019 32.6 4.1 37 106-143 232-268 (291)
36 KOG2561 Adaptor protein NUB1, 62.9 3.8 8.3E-05 37.6 1.2 34 114-148 312-345 (568)
37 KOG0010 Ubiquitin-like protein 59.0 12 0.00026 34.5 3.7 30 114-143 463-492 (493)
38 PF03943 TAP_C: TAP C-terminal 58.7 9.6 0.00021 24.2 2.2 41 107-148 3-43 (51)
39 PRK12570 N-acetylmuramic acid- 57.7 15 0.00033 31.2 4.0 37 106-143 233-269 (296)
40 KOG3450 Huntingtin interacting 52.7 18 0.0004 27.0 3.1 40 103-143 79-118 (119)
41 smart00804 TAP_C C-terminal do 50.9 47 0.001 22.1 4.7 40 106-146 14-53 (63)
42 smart00668 CTLH C-terminal to 46.5 28 0.0006 21.3 2.9 24 119-144 4-27 (58)
43 PF03765 CRAL_TRIO_N: CRAL/TRI 45.5 39 0.00085 20.9 3.5 26 116-142 28-53 (55)
44 cd05007 SIS_Etherase N-acetylm 43.6 14 0.0003 30.7 1.5 32 106-138 224-255 (257)
45 KOG1364 Predicted ubiquitin re 42.3 42 0.0009 29.8 4.3 40 107-146 9-48 (356)
46 COG3626 PhnI Uncharacterized e 40.3 46 0.001 29.0 4.2 42 107-148 44-85 (367)
47 PF05381 Peptidase_C21: Tymovi 40.0 1.1E+02 0.0024 22.6 5.6 46 11-59 47-94 (104)
48 COG5539 Predicted cysteine pro 39.0 4.2 9E-05 35.2 -2.3 30 3-32 173-203 (306)
49 PF10568 Tom37: Outer mitochon 38.4 46 0.00099 22.4 3.2 22 11-32 18-42 (72)
50 KOG2934 Uncharacterized conser 37.8 25 0.00055 28.5 2.1 23 111-133 74-96 (204)
51 TIGR00601 rad23 UV excision re 37.2 54 0.0012 29.1 4.3 40 104-145 337-376 (378)
52 PF00545 Ribonuclease: ribonuc 37.0 19 0.00042 24.8 1.2 16 47-62 67-82 (83)
53 KOG4167 Predicted DNA-binding 33.7 49 0.0011 32.4 3.6 33 116-148 573-605 (907)
54 PF10905 DUF2695: Protein of u 32.6 1.2E+02 0.0025 19.7 4.2 31 112-142 9-40 (53)
55 PRK01905 DNA-binding protein F 31.0 73 0.0016 21.5 3.3 23 119-141 38-60 (77)
56 PF12244 DUF3606: Protein of u 30.6 1.5E+02 0.0032 19.1 4.5 38 103-141 18-55 (57)
57 PRK00430 fis global DNA-bindin 27.6 85 0.0018 22.3 3.2 23 119-141 56-78 (95)
58 PRK05441 murQ N-acetylmuramic 25.5 82 0.0018 26.8 3.3 31 110-141 268-298 (299)
59 PF00941 FAD_binding_5: FAD bi 24.8 28 0.00061 26.9 0.3 31 2-32 103-140 (171)
60 PF11013 DUF2851: Protein of u 23.2 1.1E+02 0.0023 27.3 3.7 32 119-150 159-190 (377)
61 COG5481 Uncharacterized conser 23.1 99 0.0021 20.8 2.6 25 120-144 9-33 (67)
62 PF06988 NifT: NifT/FixU prote 21.5 14 0.00029 25.1 -1.7 12 1-12 29-40 (64)
63 COG4290 Guanyl-specific ribonu 21.0 43 0.00092 26.1 0.7 17 48-64 135-151 (152)
No 1
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.2e-15 Score=128.55 Aligned_cols=63 Identities=30% Similarity=0.482 Sum_probs=55.2
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEcccCCCCCceEEEEeec-----CccccccccCC
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHD-----GEHYNGVRLKE 64 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~~~~~i~LsYh~-----geHYnSvr~~~ 64 (155)
|++++.|||++||.|+|.+|++||+||+.+.|+..++.. -...++|.|+||+ |+|||||....
T Consensus 232 I~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~~~~gee-y~kd~pL~lvY~rH~y~LGeHYNS~~~~~ 299 (302)
T KOG2606|consen 232 IRNTAAWGGELELKALSHVLQVPIEVYQADGPILEYGEE-YGKDKPLILVYHRHAYGLGEHYNSVTPLK 299 (302)
T ss_pred hhhhccccchHHHHHHHHhhccCeEEeecCCCceeechh-hCCCCCeeeehHHhHHHHHhhhccccccc
Confidence 578999999999999999999999999999999999852 2235899999996 99999998653
No 2
>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae. In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....
Probab=99.19 E-value=2.5e-11 Score=88.39 Aligned_cols=57 Identities=33% Similarity=0.532 Sum_probs=46.6
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCc--EEEcc----cCCCCCceEEEEeec-----Cccc
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSPR--WYIRN----FDYHEARMIHLSYHD-----GEHY 57 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~--~~i~~----~~~~~~~~i~LsYh~-----geHY 57 (155)
|+++|+|||++||+|+|.+|+++|.||+...+. +.+.. .+....++|+|.|+. ++||
T Consensus 54 ~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy 121 (121)
T PF02338_consen 54 MSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY 121 (121)
T ss_dssp HTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred hccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence 789999999999999999999999999885544 23321 123467899999998 9998
No 3
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=97.65 E-value=0.00016 Score=44.36 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=33.1
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
.++.++.-.+-.+.+.|+.+|++++||+|.||+.||+.+
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~~~ 42 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLEMS 42 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456677767778999999999999999999999999864
No 4
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=97.45 E-value=0.00026 Score=42.21 Aligned_cols=35 Identities=26% Similarity=0.504 Sum_probs=29.0
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
++.++.++.- |+ +.+.++++|+.++||++.|+++|
T Consensus 3 ~~~v~~L~~m-Gf-~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 3 EEKVQQLMEM-GF-SREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHHH-TS--HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHHc-CC-CHHHHHHHHHHcCCCHHHHHHhC
Confidence 4567777766 74 68899999999999999999987
No 5
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00011 Score=62.61 Aligned_cols=58 Identities=17% Similarity=0.085 Sum_probs=45.0
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEcccCCCCCceEEEEee-----cCccccccc
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYH-----DGEHYNGVR 61 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~~~~~i~LsYh-----~geHYnSvr 61 (155)
|+-+..||+.+|+||||.++++++-++...+|.+..... .....+-+.|. .| ||||.+
T Consensus 243 ~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~ik~n~c--~~~~~~e~~~~~Ha~a~G-H~n~~~ 305 (306)
T COG5539 243 VLFDASDGITIEIQQLASLLKNPHYYTNTASPSIKCNIC--GTGFVGEKDYYAHALATG-HYNFGE 305 (306)
T ss_pred hcccccccchHHHHHHHHHhcCceEEeecCCceEEeecc--ccccchhhHHHHHHHhhc-CccccC
Confidence 567889999999999999999999999998886555432 23445555554 38 999985
No 6
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=97.23 E-value=0.00062 Score=41.98 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=33.0
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
+.|...|.-||| +.+..++.|+.+++|++.||..-++...
T Consensus 2 e~i~~F~~iTg~-~~~~A~~~L~~~~wdle~Av~~y~~~~~ 41 (43)
T PF14555_consen 2 EKIAQFMSITGA-DEDVAIQYLEANNWDLEAAVNAYFDDGE 41 (43)
T ss_dssp HHHHHHHHHH-S-SHHHHHHHHHHTTT-HHHHHHHHHHSS-
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 367889999999 7899999999999999999999887554
No 7
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00018 Score=63.31 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=51.8
Q ss_pred CCCCCccCCHHHHHHHH---hhcCCcEEEEecCCCcEEEcc-cCCCCCceEEEEeecCccccccccC
Q 031691 1 METDGTWAGHMELQAAS---LVTHSNICIHRHMSPRWYIRN-FDYHEARMIHLSYHDGEHYNGVRLK 63 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s---~~~~~~I~I~q~~~p~~~i~~-~~~~~~~~i~LsYh~geHYnSvr~~ 63 (155)
|++++.||.|+|+||+| .....++.|++...+.|.-.+ ...+...++++.|+...||+++|.-
T Consensus 278 kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~n~~~~~h~~~~~~~ 344 (371)
T KOG2605|consen 278 KRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKMEKYNFWVEVHYNTARHS 344 (371)
T ss_pred cccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhhhhcccchhhhhhcccc
Confidence 78999999999999999 677888899998888776544 2234556688889899999999985
No 8
>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00033 Score=59.07 Aligned_cols=73 Identities=22% Similarity=0.238 Sum_probs=49.6
Q ss_pred CCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEcccCCCCCceEEEEeecCccccccccCC-CCCCCCCccee
Q 031691 2 ETDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGEHYNGVRLKE-DSCIGSARPII 75 (155)
Q Consensus 2 ~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~~~~~i~LsYh~geHYnSvr~~~-~~~~gp~~p~~ 75 (155)
+|.-.|||-+||.-+|..|+|-|+|+-....++.-.+.+.....-+.|-| +|-||+++.... .+..-|....+
T Consensus 173 ~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged~~~~~rv~lly-dGIHYD~l~m~~~~~~~~~~tifp 246 (307)
T KOG3288|consen 173 LKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNEFKPTDVDNTIFP 246 (307)
T ss_pred ccccccCceEEeeeehhhhceeEEEEecceeeehhcCCCCCCCceEEEEe-cccccChhhhccCCccCCcccccc
Confidence 57789999999999999999999998876543332222221233455555 599999998765 44444554444
No 9
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=97.05 E-value=0.0014 Score=40.20 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=32.2
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
.++.++.-.+-.+...|+.+|++++||+|.||..||..
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~LL~~ 42 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANNGNVEATINNLLEG 42 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 45566666666799999999999999999999999964
No 10
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=96.99 E-value=0.0012 Score=49.55 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=34.5
Q ss_pred CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
++++.|..||+.+|| +.+..+++|++|+||+-.||.+|-
T Consensus 77 i~~eDI~lV~eq~gv-s~e~A~~AL~~~~gDl~~AI~~L~ 115 (116)
T TIGR00264 77 ITEDDIELVMKQCNV-SKEEARRALEECGGDLAEAIMKLE 115 (116)
T ss_pred CCHHHHHHHHHHhCc-CHHHHHHHHHHcCCCHHHHHHHhh
Confidence 456678999999999 589999999999999999999873
No 11
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=96.90 E-value=0.0016 Score=48.83 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=35.4
Q ss_pred cCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 102 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 102 ~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
.++++.|..||+.+|| +.+..+++|++|+||+-.||.+|-
T Consensus 74 ~i~~edI~lv~~q~gv-s~~~A~~AL~~~~gDl~~AI~~L~ 113 (115)
T PRK06369 74 EIPEEDIELVAEQTGV-SEEEARKALEEANGDLAEAILKLS 113 (115)
T ss_pred CCCHHHHHHHHHHHCc-CHHHHHHHHHHcCCcHHHHHHHHh
Confidence 3556788999999999 589999999999999999999885
No 12
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=96.86 E-value=0.0034 Score=37.09 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=27.9
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
.++.++ ..|. +.+.++++|+.++||++.|+++|+
T Consensus 4 ~v~~L~-~mGf-~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 4 KLEQLL-EMGF-SREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHH-HcCC-CHHHHHHHHHHhCCCHHHHHHHHh
Confidence 344444 3575 599999999999999999999987
No 13
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=96.49 E-value=0.006 Score=35.85 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=26.7
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 108 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 108 v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
++.++ ..| .+.+.++++|+.++||++.|+++|+
T Consensus 5 v~~L~-~mG-f~~~~a~~aL~~~~~d~~~A~~~L~ 37 (37)
T smart00165 5 IDQLL-EMG-FSREEALKALRAANGNVERAAEYLL 37 (37)
T ss_pred HHHHH-HcC-CCHHHHHHHHHHhCCCHHHHHHHHC
Confidence 44444 346 6788999999999999999999985
No 14
>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.
Probab=95.91 E-value=0.016 Score=47.43 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=36.5
Q ss_pred ccCCHHHHHHHHhhcCCcEEEEecCCC----cEEEccc---CCCCCceEEEEeecCccccccc
Q 031691 6 TWAGHMELQAASLVTHSNICIHRHMSP----RWYIRNF---DYHEARMIHLSYHDGEHYNGVR 61 (155)
Q Consensus 6 tWGG~~EL~A~s~~~~~~I~I~q~~~p----~~~i~~~---~~~~~~~i~LsYh~geHYnSvr 61 (155)
.=++|+.|.|||++++++|.|+-.+.. ......+ +....+.|+|-|--| |||-+.
T Consensus 182 ~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~~~~~~i~LLyrpg-HYdIly 243 (244)
T PF10275_consen 182 KEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNESQEPQITLLYRPG-HYDILY 243 (244)
T ss_dssp --B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SSTTSS-SEEEEEETB-EEEEEE
T ss_pred ccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccCCCCCEEEEEEcCC-cccccc
Confidence 346999999999999999999988754 1111112 234678999999988 999654
No 15
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=95.79 E-value=0.021 Score=38.11 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=34.0
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
.|+.+-..+||+.-+-|..+|.+|+.|.+.|+..||..+
T Consensus 8 ~VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~qD 46 (60)
T PF06972_consen 8 TVQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQD 46 (60)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 456677778998889999999999999999999999753
No 16
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=95.62 E-value=0.027 Score=42.60 Aligned_cols=41 Identities=37% Similarity=0.472 Sum_probs=36.4
Q ss_pred CcCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 101 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 101 ~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
..++++.++.||+-+|. +.+.++++|++++||+-.||-.|.
T Consensus 81 ~~i~eeDIkLV~eQa~V-sreeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 81 SDISEEDIKLVMEQAGV-SREEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred CCCCHHHHHHHHHHhCC-CHHHHHHHHHHcCCcHHHHHHHhc
Confidence 45677889999999997 699999999999999999998874
No 17
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=94.34 E-value=0.053 Score=33.30 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=23.2
Q ss_pred CcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 116 GCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 116 Gc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
.-.....+.-+|+.|+||+-.|||.+|
T Consensus 13 P~~kr~~Le~iL~~C~GDvv~AIE~~l 39 (39)
T PF03474_consen 13 PHQKRSVLELILQRCNGDVVQAIEQFL 39 (39)
T ss_pred CCCChHHHHHHHHHcCCcHHHHHHHhC
Confidence 445778888999999999999999875
No 18
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=91.63 E-value=0.29 Score=41.95 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=34.4
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
...|++....||. -....+++|.+++||+|.||++|...
T Consensus 5 a~~IK~LRe~Tga-gm~dCKkAL~e~~gDiekAi~~LRkk 43 (290)
T TIGR00116 5 AQLVKELRERTGA-GMMDCKKALTEANGDFEKAIKNLRES 43 (290)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4568889999997 58889999999999999999999764
No 19
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=91.61 E-value=0.33 Score=39.40 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=34.3
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
...|++....||. -....+++|.+++||+|.||++|...
T Consensus 5 a~~ik~LR~~tga-~~~~ck~AL~~~~gd~~~A~~~lr~~ 43 (198)
T PRK12332 5 AKLVKELREKTGA-GMMDCKKALEEANGDMEKAIEWLREK 43 (198)
T ss_pred HHHHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4578889999995 68999999999999999999999764
No 20
>PRK09377 tsf elongation factor Ts; Provisional
Probab=91.42 E-value=0.32 Score=41.68 Aligned_cols=40 Identities=25% Similarity=0.416 Sum_probs=34.8
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
....|++....||. -..-.+++|++++||+|.|+++|...
T Consensus 5 s~~~IK~LR~~Tga-gm~dCKkAL~e~~gD~ekAi~~Lrk~ 44 (290)
T PRK09377 5 TAALVKELRERTGA-GMMDCKKALTEADGDIEKAIEWLRKK 44 (290)
T ss_pred CHHHHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 34578899999996 58999999999999999999999864
No 21
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.96 E-value=0.85 Score=40.42 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=32.0
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+..|+.||+= | ++++.|+.+|++.-+|.|.||||||.
T Consensus 157 e~~I~~i~eM-G-f~R~qV~~ALRAafNNPdRAVEYL~t 193 (378)
T TIGR00601 157 ETTIEEIMEM-G-YEREEVERALRAAFNNPDRAVEYLLT 193 (378)
T ss_pred HHHHHHHHHh-C-CCHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 4567777753 5 79999999999999999999999985
No 22
>KOG3991 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.55 E-value=0.87 Score=38.16 Aligned_cols=54 Identities=20% Similarity=0.185 Sum_probs=40.1
Q ss_pred CCHHHHHHHHhhcCCcEEEEecCCCcE-EE--cccCCCCCceEEEEeecCcccccccc
Q 031691 8 AGHMELQAASLVTHSNICIHRHMSPRW-YI--RNFDYHEARMIHLSYHDGEHYNGVRL 62 (155)
Q Consensus 8 GG~~EL~A~s~~~~~~I~I~q~~~p~~-~i--~~~~~~~~~~i~LsYh~geHYnSvr~ 62 (155)
.||++|-|||+++++.|.|--++...- .. ..++..+.+.|.|-|.- -||+-+.+
T Consensus 199 sdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~s~P~I~LLYrp-GHYdilY~ 255 (256)
T KOG3991|consen 199 SDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEASAPEIYLLYRP-GHYDILYK 255 (256)
T ss_pred cCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccccCceEEEEecC-CccccccC
Confidence 689999999999999999966643211 12 22555678899999986 49987654
No 23
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=86.75 E-value=1.1 Score=38.51 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=33.3
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
...|++....||- -.....++|.+++||+|.||++|..
T Consensus 6 a~~VKeLRe~TgA-GMmdCKkAL~E~~Gd~EkAie~LR~ 43 (296)
T COG0264 6 AALVKELREKTGA-GMMDCKKALEEANGDIEKAIEWLRE 43 (296)
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4568888889985 5888999999999999999999976
No 24
>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=82.57 E-value=0.71 Score=40.92 Aligned_cols=141 Identities=12% Similarity=-0.016 Sum_probs=78.7
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEEcccCCC-CCceEEEEeecCccccccccCCCCCCCCCcceeeccc
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYIRNFDYH-EARMIHLSYHDGEHYNGVRLKEDSCIGSARPIIIKAD 79 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~-~~~~i~LsYh~geHYnSvr~~~~~~~gp~~p~~~~~d 79 (155)
|...++|-|+..++|++.-....+..+-...|.|.+.+..+. ...+.+.+||.+ |++....-..-...++.+.+....
T Consensus 115 ~~~~~~~~g~~~~~a~s~~~~~~~~~~~~~~~~~~~~~~sd~~~~~~~~~~~~~~-~~~~~~~g~~in~y~~~~~~~~~~ 193 (371)
T KOG2605|consen 115 MCSFHSRRGNESFQAASFGGLEIDLEVERNSPEWLGQSPSDPLRSVPSMEAIHAR-HPEAKEVGVRINDYNPKVLVPFIN 193 (371)
T ss_pred CCcccccccccccccccccccccchhhhccCchhccccccccccccccccchhhc-cccchhhcccccCCCccccccccc
Confidence 556789999999999999999999999999999999875443 356889999975 555444333333333332222222
Q ss_pred cchhhhhhhhhhhhhhccCCCCcCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 80 ADISAASIQSKTVTSKLKGAAGIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
..+.+...+.+--....+.. ..+.... ++|-.-.-|....+.-|+.. +.+....+..+...+.
T Consensus 194 ~~~~~~~~~~s~~~~~~~~~-~~~g~e~-~Kv~edGsC~fra~aDQvy~--d~e~~~~~~~~~~dq~ 256 (371)
T KOG2605|consen 194 GLPPSEEEPQSAHERSAKRK-KHFGFEY-KKVVEDGSCLFRALADQVYG--DDEQHDHNRRECVDQL 256 (371)
T ss_pred cCCCchHHHHHHHHHHHHHH-HHhhhhh-hhcccCCchhhhccHHHhhc--CHHHHHHHHHHHHHHH
Confidence 22211111110000000000 1111112 23332234544555555555 7788888888877664
No 25
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=81.88 E-value=2.4 Score=25.53 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
..+.|+++|+.++||+-.|-..|
T Consensus 6 E~~~i~~aL~~~~gn~~~aA~~L 28 (42)
T PF02954_consen 6 EKQLIRQALERCGGNVSKAARLL 28 (42)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 36789999999999999887665
No 26
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis]
Probab=81.81 E-value=2.4 Score=37.10 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.5
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
...+++....|| +.+..++++|++|+||++.|.++|-..-+.+
T Consensus 47 ~allk~LR~kTg-as~~ncKkALee~~gDl~~A~~~L~k~aqk~ 89 (340)
T KOG1071|consen 47 KALLKKLREKTG-ASMVNCKKALEECGGDLVLAEEWLHKKAQKE 89 (340)
T ss_pred HHHHHHHHHHcC-CcHHHHHHHHHHhCCcHHHHHHHHHHHHHHh
Confidence 456788888999 5799999999999999999999997665544
No 27
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=79.04 E-value=3 Score=36.56 Aligned_cols=37 Identities=24% Similarity=0.413 Sum_probs=31.6
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+..|..||.- | +|++.|+.+|++.=+|-|+||+|||-
T Consensus 136 e~~V~~Im~M-G-y~re~V~~AlRAafNNPeRAVEYLl~ 172 (340)
T KOG0011|consen 136 EQTVQQIMEM-G-YDREEVERALRAAFNNPERAVEYLLN 172 (340)
T ss_pred HHHHHHHHHh-C-ccHHHHHHHHHHhhCChhhhHHHHhc
Confidence 4467777742 4 99999999999999999999999985
No 28
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=78.81 E-value=1.2 Score=30.74 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=27.5
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 108 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 108 v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
|+.++.. .+..-..|+++|-.+.+||+.||.+||......
T Consensus 35 vr~~Lg~-~~~~e~~i~eal~~~~fDvekAl~~Ll~~~~~~ 74 (79)
T PF08938_consen 35 VREVLGD-YVPPEEQIKEALWHYYFDVEKALDYLLSKFKKK 74 (79)
T ss_dssp HHHHCCC-CC--CCHHHHHHHHTTT-CCHHHHHHHHCCHSS
T ss_pred HHHHHcc-cCCCHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 4455532 221566788899999999999999999865443
No 29
>PF05861 PhnI: Bacterial phosphonate metabolism protein (PhnI); InterPro: IPR008773 This family consists of several proteobacterial phosphonate metabolism protein (PhnI) sequences. Bacteria that use phosphonates as a phosphorus source must be able to break the stable carbon-phosphorus bond. In Escherichia coli phosphonates are broken down by a C-P lyase that has a broad substrate specificity. The genes for phosphonate uptake and degradation in E. coli are organised in an operon of 14 genes, named phnC to phnP. Three gene products (PhnC, PhnD and PhnE) comprise a binding protein-dependent phosphonate transporter, which also transports phosphate, phosphite, and certain phosphate esters such as phosphoserine; two gene products (PhnF and PhnO) may have a role in gene regulation; and nine gene products (PhnG, PhnH, PhnI, PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably comprise a membrane-associated C-P lyase enzyme complex [].; GO: 0015716 phosphonate transport
Probab=76.13 E-value=5 Score=35.43 Aligned_cols=42 Identities=26% Similarity=0.211 Sum_probs=38.4
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
+|..||..-|.+|.++..-+|++..||.-.||..|.+=+.+-
T Consensus 44 avdrVMsEgsLYdp~LAAlAiKQa~GD~~EAiFLLRAyRtTl 85 (358)
T PF05861_consen 44 AVDRVMSEGSLYDPELAALAIKQARGDLIEAIFLLRAYRTTL 85 (358)
T ss_pred HHHHHhccccccCHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Confidence 567899999999999999999999999999999999877665
No 30
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=71.30 E-value=5.9 Score=34.08 Aligned_cols=36 Identities=36% Similarity=0.767 Sum_probs=31.9
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
.+++.||..||| +.+...+.|+++++++.-||--++
T Consensus 235 Ra~RIv~~aT~~-~~~~A~~~L~~~~~~vK~AIvm~~ 270 (298)
T COG2103 235 RAVRIVMEATGC-SAEEAEALLEEAGGNVKLAIVMLL 270 (298)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCccHhHHHHHH
Confidence 467899999999 699999999999999999997665
No 31
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=70.94 E-value=18 Score=23.35 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=29.9
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
++.++++..-.-....+.|.+-|+.-+=|+.-||-.||....
T Consensus 10 edlI~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T PF11547_consen 10 EDLINQAQVVLQGKSRNVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHhcccHHHHHHHHhcccc
Confidence 445554444433357999999999999999999999998754
No 32
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=70.61 E-value=6.4 Score=33.48 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=31.5
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
.++..|+..||| |.+..+++|++++|++--||-.++.
T Consensus 237 ra~~i~~~~~~~-~~~~a~~~l~~~~~~vk~a~~~~~~ 273 (299)
T PRK05441 237 RAVRIVMEATGV-SREEAEAALEAADGSVKLAIVMILT 273 (299)
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 356788999999 5788999999999999999987765
No 33
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=69.32 E-value=7.9 Score=26.97 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=27.2
Q ss_pred hhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 112 MAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 112 ~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
|..+| .+...|.++|..+.||+..|..+++..-
T Consensus 4 ~~~~g-~~~~~v~~aL~~tSgd~~~a~~~vl~~l 36 (87)
T PF11626_consen 4 YEELG-YSREFVTHALYATSGDPELARRFVLNFL 36 (87)
T ss_dssp HHHHT-B-HHHHHHHHHHTTTBHHHHHHHHHHCH
T ss_pred HHHhC-CCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 55566 4789999999999999999999888763
No 34
>KOG2239 consensus Transcription factor containing NAC and TS-N domains [Transcription]
Probab=67.04 E-value=7.5 Score=31.90 Aligned_cols=36 Identities=31% Similarity=0.310 Sum_probs=30.2
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
...++.||.-.+|+ +..+.++|..++|||-.||-.|
T Consensus 172 ~kDIeLVmsQanvS-R~kAVkALk~~~~DiVnAIM~L 207 (209)
T KOG2239|consen 172 AKDIELVMSQANVS-RAKAVKALKNNNNDIVNAIMEL 207 (209)
T ss_pred hhhHHHHHHHhhhh-HHHHHHHHHhccchHHHHHHHh
Confidence 34578999989985 6667779999999999999876
No 35
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=66.70 E-value=8.9 Score=32.60 Aligned_cols=37 Identities=27% Similarity=0.535 Sum_probs=31.4
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
.++..|+..||| +.+..+++|++++|++--||-.++.
T Consensus 232 Ra~~i~~~~~~~-~~~~a~~~l~~~~~~vk~Ai~~~~~ 268 (291)
T TIGR00274 232 RAVRIVRQATDC-NKELAEQTLLAADQNVKLAIVMILS 268 (291)
T ss_pred HHHHHHHHHhCc-CHHHHHHHHHHhCCCcHHHHHHHHh
Confidence 456788989999 5788999999999999999987654
No 36
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.90 E-value=3.8 Score=37.64 Aligned_cols=34 Identities=29% Similarity=0.519 Sum_probs=27.5
Q ss_pred cCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 114 GSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 114 ~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
+-|- -....|-+|+.|+||||+||.++...++-.
T Consensus 312 ~mGf-eesdaRlaLRsc~g~Vd~AvqfI~erre~l 345 (568)
T KOG2561|consen 312 GMGF-EESDARLALRSCNGDVDSAVQFIIERREKL 345 (568)
T ss_pred HcCC-CchHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 4454 466778899999999999999999877644
No 37
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=58.96 E-value=12 Score=34.46 Aligned_cols=30 Identities=33% Similarity=0.491 Sum_probs=27.7
Q ss_pred cCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 114 GSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 114 ~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
.-|..|++.-.++|.+-.|||.+||+.||.
T Consensus 463 ~MGF~nre~nlqAL~atgGdi~aAverll~ 492 (493)
T KOG0010|consen 463 DMGFLDREANLQALRATGGDINAAVERLLG 492 (493)
T ss_pred hcCCccHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 458899999999999999999999999984
No 38
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=58.69 E-value=9.6 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=32.3
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
.|..++..||= +.+--+..|++++-|.++|+..........
T Consensus 3 mv~~~s~~Tgm-n~~~s~~CL~~n~Wd~~~A~~~F~~l~~~~ 43 (51)
T PF03943_consen 3 MVQQFSQQTGM-NLEWSQKCLEENNWDYERALQNFEELKAQG 43 (51)
T ss_dssp HHHHHHHHCSS--CCHHHHHHHHTTT-CCHHHHHHHHCCCTT
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 46677778885 678888999999999999999988776654
No 39
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=57.73 E-value=15 Score=31.23 Aligned_cols=37 Identities=27% Similarity=0.630 Sum_probs=30.9
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
.++..|+..||| |.+..+++|++++|+|--||-.++.
T Consensus 233 Ra~~i~~~~~~~-~~~~a~~~l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 233 RAVRIVMQATGC-SEDEAKELLKESDNDVKLAILMILT 269 (296)
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHhCCccHHHHHHHHh
Confidence 356778888999 6778899999999999999986654
No 40
>KOG3450 consensus Huntingtin interacting protein HYPK [General function prediction only]
Probab=52.67 E-value=18 Score=26.99 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=31.8
Q ss_pred CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+.+..++.||+..-. ....+++.|+.+.||+-.|...|+.
T Consensus 79 IkkeDlelImnELei-~k~~aer~LrE~~Gdvv~Alral~s 118 (119)
T KOG3450|consen 79 IKKEDLELIMNELEI-SKAAAERSLREHMGDVVEALRALTS 118 (119)
T ss_pred cCHHHHHHHHHHHHH-HHHHHHHHHHHhcccHHHHHHHHhc
Confidence 345667889986544 4677899999999999999998874
No 41
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=50.88 E-value=47 Score=22.08 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=33.6
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
..|..++..||- +.+=-+..|++++.|.+.|+........
T Consensus 14 ~~v~~~~~~Tgm-n~~~s~~cLe~~~Wd~~~Al~~F~~lk~ 53 (63)
T smart00804 14 EMVQAFSAQTGM-NAEYSQMCLEDNNWDYERALKNFTELKS 53 (63)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 456778888885 7888899999999999999998887553
No 42
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=46.50 E-value=28 Score=21.34 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
+...|++.+. .||++.|++.+-..
T Consensus 4 ~~~~i~~~i~--~g~~~~a~~~~~~~ 27 (58)
T smart00668 4 ERKRIRELIL--KGDWDEALEWLSSL 27 (58)
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHc
Confidence 4667777776 89999999887443
No 43
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle. Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....
Probab=45.45 E-value=39 Score=20.94 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=20.1
Q ss_pred CcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 116 GCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 116 Gc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
.|.| ..+.+.|++.++|++.|+..|.
T Consensus 28 ~~~d-~~llRFLRARkf~v~~A~~mL~ 53 (55)
T PF03765_consen 28 DHDD-NFLLRFLRARKFDVEKAFKMLK 53 (55)
T ss_dssp S-SH-HHHHHHHHHTTT-HHHHHHHHH
T ss_pred CCCH-HHHHHHHHHccCCHHHHHHHHH
Confidence 4444 7777799999999999998875
No 44
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=43.63 E-value=14 Score=30.66 Aligned_cols=32 Identities=41% Similarity=0.699 Sum_probs=27.0
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAI 138 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai 138 (155)
.++..|+..||| +.+..+++|++++|++-.||
T Consensus 224 ra~~i~~~~~~~-~~~~a~~~l~~~~~~~k~a~ 255 (257)
T cd05007 224 RAIRIVMEATGV-SRDEAEAALEQAGGDVKTAI 255 (257)
T ss_pred HHHHHHHHHHCc-CHHHHHHHHHHhCCCceeee
Confidence 356788999999 57778999999999998776
No 45
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=42.28 E-value=42 Score=29.80 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=34.4
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
.|+++|.-|+-.+.+...+.|..+.+|.++||..++....
T Consensus 9 lv~~fl~It~~~t~e~A~q~L~~~~~~le~ai~Lffe~~~ 48 (356)
T KOG1364|consen 9 LVSKFLAITVQQTVEIATQYLSAADWDLEAAINLFFEHGG 48 (356)
T ss_pred HHHHHHHHhccccHHHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 5789999999557999999999999999999987766544
No 46
>COG3626 PhnI Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=40.32 E-value=46 Score=28.98 Aligned_cols=42 Identities=29% Similarity=0.230 Sum_probs=37.7
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
+|..||..-+.+|.++.-=+|++..||+-.||..|.+-+++-
T Consensus 44 aVdRVM~EgslyDreLAALAikQa~GD~~EAIFLlRAYRTTL 85 (367)
T COG3626 44 AVDRVMTEGSLYDRELAALALKQASGDLVEAIFLLRAYRTTL 85 (367)
T ss_pred HHHHHhhccchhHHHHHHHHHHHhcchHHHHHHHHHHHHhcc
Confidence 567899988999999999999999999999999998877654
No 47
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=39.95 E-value=1.1e+02 Score=22.57 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCcEEEEecCCCcEEEcccCCCCCceEEEEeecC--ccccc
Q 031691 11 MELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDG--EHYNG 59 (155)
Q Consensus 11 ~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~~~~~i~LsYh~g--eHYnS 59 (155)
..|.|+|..|.....||..... +.++-. .....++|.|..| -||.-
T Consensus 47 DhltaLa~~~~~~~~~hs~~~~-~~~Gi~--~as~~~~I~ht~G~p~HFs~ 94 (104)
T PF05381_consen 47 DHLTALAYRYHFQCTFHSDHGV-LHYGIK--DASTVFTITHTPGPPGHFSL 94 (104)
T ss_pred HHHHHHHHHHheEEEEEcCCce-EEeecC--CCceEEEEEeCCCCCCcccc
Confidence 5688999999999999997653 455442 2567899999887 49987
No 48
>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]
Probab=39.05 E-value=4.2 Score=35.16 Aligned_cols=30 Identities=13% Similarity=0.033 Sum_probs=25.6
Q ss_pred CCCccC-CHHHHHHHHhhcCCcEEEEecCCC
Q 031691 3 TDGTWA-GHMELQAASLVTHSNICIHRHMSP 32 (155)
Q Consensus 3 ~~gtWG-G~~EL~A~s~~~~~~I~I~q~~~p 32 (155)
+.--|| |++||-++|..+++.|+|.-.++.
T Consensus 173 k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~ 203 (306)
T COG5539 173 KPDSQGDGCIEIAIISDQLPVRIHVVDVDKD 203 (306)
T ss_pred ccccCCCceEEEeEeccccceeeeeeecchh
Confidence 455799 999999999999999998877643
No 49
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=38.37 E-value=46 Score=22.40 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=19.9
Q ss_pred HHHHHHHhhcCCc---EEEEecCCC
Q 031691 11 MELQAASLVTHSN---ICIHRHMSP 32 (155)
Q Consensus 11 ~EL~A~s~~~~~~---I~I~q~~~p 32 (155)
+.++|+++..+.+ +.|+..+.|
T Consensus 18 La~~~yl~~~~~~~~~~~vv~s~n~ 42 (72)
T PF10568_consen 18 LAVIAYLKFAGAPEQQFKVVPSNNP 42 (72)
T ss_pred HHHHHHHHhCCCCCceEEEEEcCCC
Confidence 7889999999999 999998776
No 50
>KOG2934 consensus Uncharacterized conserved protein, contains Josephin domain [General function prediction only]
Probab=37.78 E-value=25 Score=28.51 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.8
Q ss_pred HhhcCCcCCHHHHHHHHHHhCCC
Q 031691 111 VMAGSGCENSEKVEEVLLQVGGD 133 (155)
Q Consensus 111 v~~~tGc~d~~~I~~~L~~~~gd 133 (155)
.+.++||+|+..|-.+|++|+..
T Consensus 74 s~~g~Gnydvnvimaalq~~gl~ 96 (204)
T KOG2934|consen 74 SWKGPGNYDVNVIMAALQQCGLE 96 (204)
T ss_pred cccCCCcccHHHHHHHHHhcCce
Confidence 36789999999999999999886
No 51
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.19 E-value=54 Score=29.14 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=32.8
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
+.++|+..|. .| .+..+|.|+-.+|+.|-+.|..|||...
T Consensus 337 E~~AIeRL~~-LG-F~r~~viqaY~ACdKNEelAAn~Lf~~~ 376 (378)
T TIGR00601 337 EKEAIERLCA-LG-FDRGLVIQAYFACDKNEELAANYLLSQN 376 (378)
T ss_pred HHHHHHHHHH-cC-CCHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 3456666663 46 6999999999999999999999999754
No 52
>PF00545 Ribonuclease: ribonuclease; InterPro: IPR000026 Ribonuclease N1 (RNase N1) is a guanine-specific ribonuclease from fungi. RNase T1 and other bacteria RNases are related. The enzyme hydrolyses the phosphodiester bonds in RNA and oligoribonucleotides [], resulting in 3'-nucleoside monophosphates via 2',3'-cyclophosphate intermediates.; GO: 0003723 RNA binding, 0004521 endoribonuclease activity; PDB: 1BRK_C 1BAN_C 2F5W_A 1B3S_C 1B2Z_B 1B27_B 3DA7_E 1BSB_C 3Q3F_A 1B20_A ....
Probab=37.01 E-value=19 Score=24.79 Aligned_cols=16 Identities=38% Similarity=0.688 Sum_probs=13.8
Q ss_pred EEEEeecCcccccccc
Q 031691 47 IHLSYHDGEHYNGVRL 62 (155)
Q Consensus 47 i~LsYh~geHYnSvr~ 62 (155)
.-+.||.+.||+++..
T Consensus 67 ~g~iy~t~dhy~tF~~ 82 (83)
T PF00545_consen 67 CGVIYHTGDHYNTFVR 82 (83)
T ss_dssp EEEEEECSSTTSSEEE
T ss_pred CCeEEEcCCchhceEe
Confidence 6788999999999864
No 53
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=33.74 E-value=49 Score=32.36 Aligned_cols=33 Identities=30% Similarity=0.419 Sum_probs=28.6
Q ss_pred CcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 116 GCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 116 Gc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
|.++.++.--.|-+++|||..|+|-||-....+
T Consensus 573 gGtN~ElALH~L~EakGnv~vAlE~LLlr~p~~ 605 (907)
T KOG4167|consen 573 GGTNSELALHSLFEAKGNVMVALEMLLLRKPVR 605 (907)
T ss_pred CCccHHHHHHHHHHhcccHHHHHHHHHhcCCCC
Confidence 457999999999999999999999999765443
No 54
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=32.60 E-value=1.2e+02 Score=19.68 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=25.0
Q ss_pred hhcCCc-CCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 112 MAGSGC-ENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 112 ~~~tGc-~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
..++|| +++.+.++.|.+.+=++++.++.|-
T Consensus 9 l~~~~CdHtlr~t~~fl~~~~~~~~~vl~~l~ 40 (53)
T PF10905_consen 9 LSAFGCDHTLRLTRQFLRQRQLDWEDVLEWLR 40 (53)
T ss_pred cCcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456788 4999999999999999976666553
No 55
>PRK01905 DNA-binding protein Fis; Provisional
Probab=30.99 E-value=73 Score=21.47 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
..+.|+++|+.++||+..|...|
T Consensus 38 E~~~i~~aL~~~~gn~s~aAr~L 60 (77)
T PRK01905 38 EKPLLEVVMEQAGGNQSLAAEYL 60 (77)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 57789999999999998886544
No 56
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=30.61 E-value=1.5e+02 Score=19.10 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=30.2
Q ss_pred CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHH
Q 031691 103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
-++..|+-++...||+ .+.++++.++.+.++.+.-.+|
T Consensus 18 ~e~~ev~ywa~~~gvt-~~~L~~AV~~vG~~~~~V~~~L 55 (57)
T PF12244_consen 18 SEPYEVRYWAKRFGVT-EEQLREAVRAVGNSRAAVRAYL 55 (57)
T ss_pred CCHHHHHHHHHHHCcC-HHHHHHHHHHHCcCHHHHHHHH
Confidence 3455778899999996 7788889999998887766655
No 57
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=27.59 E-value=85 Score=22.30 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
....|+++|+.++||+..|-..|
T Consensus 56 Er~~i~~aL~~~~gn~s~AAr~L 78 (95)
T PRK00430 56 EAPLLDMVMQYTRGNQTRAALML 78 (95)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHh
Confidence 46789999999999999886544
No 58
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=25.54 E-value=82 Score=26.76 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=26.1
Q ss_pred HHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHH
Q 031691 110 LVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 110 ~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
.+|..+|| |.+..++.|.+++|++..|+..+
T Consensus 268 ~~~~~~~~-~~~~a~~~l~~~~g~~~~~~~~~ 298 (299)
T PRK05441 268 IVMILTGL-DAAEAKALLARHGGFLRKALAEL 298 (299)
T ss_pred HHHHHhCC-CHHHHHHHHHHcCCCHHHHHhhc
Confidence 56666777 79999999999999999998653
No 59
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=24.84 E-value=28 Score=26.93 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=22.4
Q ss_pred CCCCccCCHHH-------HHHHHhhcCCcEEEEecCCC
Q 031691 2 ETDGTWAGHME-------LQAASLVTHSNICIHRHMSP 32 (155)
Q Consensus 2 ~~~gtWGG~~E-------L~A~s~~~~~~I~I~q~~~p 32 (155)
|+-||||||+. +..+-.+++-.++|...+..
T Consensus 103 Rn~aTiGGNl~~~~~~sD~~~~Llal~A~v~i~~~~g~ 140 (171)
T PF00941_consen 103 RNRATIGGNLCNASPASDLAPALLALDARVEIASPDGT 140 (171)
T ss_dssp HTT-BHHHHHHHTBTT-SHHHHHHHTT-EEEEEETTEE
T ss_pred eeeeeeccccccCcccccHHHHHHHhCcEEEEEcCCee
Confidence 67899999993 55566788888888887653
No 60
>PF11013 DUF2851: Protein of unknown function (DUF2851); InterPro: IPR021272 This bacterial family of proteins has no known function.
Probab=23.24 E-value=1.1e+02 Score=27.29 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHhCCCcc
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFLIAEQGTEEY 150 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~~~ 150 (155)
-...|.+.|+.+++|+|.++-.+|+...|-..
T Consensus 159 K~~~i~~~l~~~~~dwe~~~y~~Lar~fG~~~ 190 (377)
T PF11013_consen 159 KAQRIEQLLEETNNDWEEVLYQLLARNFGFKV 190 (377)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCch
Confidence 46788999999999999999999999888653
No 61
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=23.08 E-value=99 Score=20.81 Aligned_cols=25 Identities=36% Similarity=0.260 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 120 SEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 120 ~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
.++-..-|++.+-|.|+||-+|++-
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~ 33 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIAT 33 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3444456889999999999999883
No 62
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=21.46 E-value=14 Score=25.05 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=7.5
Q ss_pred CCCCCccCCHHH
Q 031691 1 METDGTWAGHME 12 (155)
Q Consensus 1 M~~~gtWGG~~E 12 (155)
|.+++.|||.++
T Consensus 29 ~E~~~~wGG~v~ 40 (64)
T PF06988_consen 29 MEKPELWGGEVT 40 (64)
T ss_dssp ESSSSS-SSEEE
T ss_pred eeccCccCCEEE
Confidence 356788999654
No 63
>COG4290 Guanyl-specific ribonuclease Sa [Nucleotide transport and metabolism]
Probab=21.04 E-value=43 Score=26.07 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.3
Q ss_pred EEEeecCccccccccCC
Q 031691 48 HLSYHDGEHYNGVRLKE 64 (155)
Q Consensus 48 ~LsYh~geHYnSvr~~~ 64 (155)
.+-|+-.+||+|.|.+.
T Consensus 135 e~~YYT~dHY~SFrri~ 151 (152)
T COG4290 135 EVWYYTSDHYESFRRIT 151 (152)
T ss_pred ceeEEecchhhhhhccc
Confidence 45688899999999875
Done!