Query 031691
Match_columns 155
No_of_seqs 148 out of 407
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3phu_A RNA-directed RNA polyme 99.8 3E-19 1E-23 144.7 6.4 76 1-76 95-173 (219)
2 3pfy_A OTU domain-containing p 99.8 4.2E-19 1.4E-23 140.5 6.5 64 1-64 119-183 (185)
3 3phx_A RNA-directed RNA polyme 99.8 4.9E-19 1.7E-23 140.0 5.4 76 1-76 95-173 (185)
4 3by4_A OTU1, ubiquitin thioest 99.7 1.6E-17 5.5E-22 133.6 6.7 59 1-62 80-139 (212)
5 1tff_A Ubiquitin thiolesterase 99.4 2.7E-13 9.2E-18 110.4 6.2 63 1-64 168-232 (234)
6 2zfy_A Ubiquitin thioesterase 99.4 5.8E-13 2E-17 108.2 6.4 61 1-62 171-234 (234)
7 4dhi_B Ubiquitin thioesterase 98.6 4.8E-08 1.6E-12 81.7 7.0 63 1-64 206-275 (284)
8 4ddg_A Ubiquitin-conjugating e 98.5 5E-08 1.7E-12 84.4 4.8 61 1-62 336-399 (399)
9 1wgl_A TOLL-interacting protei 97.7 7.7E-05 2.6E-09 48.6 5.5 44 105-148 10-53 (59)
10 2dhy_A CUE domain-containing p 97.6 9.4E-05 3.2E-09 49.4 5.5 44 106-149 20-63 (67)
11 1wj7_A Hypothetical protein (R 97.5 0.00013 4.6E-09 52.6 4.9 40 105-145 40-79 (104)
12 2cp9_A EF-TS, EF-TSMT, elongat 97.3 0.00042 1.5E-08 45.9 5.0 44 101-145 6-49 (64)
13 2bwb_A Ubiquitin-like protein 97.2 0.00037 1.3E-08 43.0 4.1 36 107-143 10-45 (46)
14 1otr_A Protein CUE2; protein-p 97.2 0.00067 2.3E-08 42.7 5.2 40 107-146 7-46 (49)
15 2dah_A Ubiquilin-3; UBA domain 97.1 0.00078 2.7E-08 42.9 4.8 39 107-146 12-50 (54)
16 1wr1_B Ubiquitin-like protein 97.1 0.00066 2.3E-08 44.0 4.3 36 107-143 20-55 (58)
17 1z96_A DNA-damage, UBA-domain 97.0 0.00085 2.9E-08 39.3 4.0 36 105-142 5-40 (40)
18 1p3q_Q VPS9P, vacuolar protein 97.0 0.00021 7.2E-09 45.9 1.3 40 107-146 15-54 (54)
19 2dna_A Unnamed protein product 96.9 0.0011 3.7E-08 44.3 4.3 34 114-147 28-61 (67)
20 1wji_A Tudor domain containing 96.9 0.0042 1.4E-07 40.6 6.9 45 102-148 7-51 (63)
21 2knz_A Ubiquilin-4; cytoplasm, 96.8 0.0016 5.5E-08 41.1 4.6 36 108-144 15-50 (53)
22 1vg5_A RSGI RUH-014, rhomboid 96.8 0.0025 8.7E-08 43.0 5.6 39 104-144 29-67 (73)
23 2g3q_A Protein YBL047C; endocy 96.8 0.0023 8E-08 38.3 4.8 36 106-143 6-41 (43)
24 1vej_A Riken cDNA 4931431F19; 96.8 0.0014 4.8E-08 44.5 4.1 37 107-144 32-68 (74)
25 2cp8_A NEXT to BRCA1 gene 1 pr 96.8 0.0015 5.2E-08 41.8 4.0 37 112-148 16-52 (54)
26 1ify_A HHR23A, UV excision rep 96.8 0.0011 3.6E-08 41.3 3.2 37 105-143 9-45 (49)
27 2jy5_A Ubiquilin-1; UBA, alter 96.6 0.0021 7.2E-08 40.4 3.6 36 107-143 15-50 (52)
28 1tr8_A Conserved protein (MTH1 96.6 0.0019 6.7E-08 46.2 3.8 38 103-141 64-101 (102)
29 2dak_A Ubiquitin carboxyl-term 96.6 0.0039 1.3E-07 40.5 5.0 46 101-148 6-51 (63)
30 3e21_A HFAF1, FAS-associated f 96.3 0.0043 1.5E-07 38.2 3.9 35 106-140 7-41 (45)
31 2cwb_A Chimera of immunoglobul 96.2 0.0055 1.9E-07 44.3 4.6 31 114-144 75-105 (108)
32 2dam_A ETEA protein; KIAA0887, 96.2 0.007 2.4E-07 40.0 4.7 42 106-147 20-61 (67)
33 1wiv_A UBP14, ubiquitin-specif 95.9 0.017 5.7E-07 38.7 5.4 40 104-145 29-68 (73)
34 1whc_A RSGI RUH-027, UBA/UBX 3 95.7 0.039 1.3E-06 35.9 6.7 44 103-148 8-52 (64)
35 1v92_A NSFL1 cofactor P47; 3-h 95.5 0.022 7.5E-07 34.1 4.3 37 106-143 7-43 (46)
36 2dal_A Protein KIAA0794; FAS a 95.4 0.027 9.4E-07 36.4 5.0 42 106-148 17-58 (62)
37 2dag_A Ubiquitin carboxyl-term 95.4 0.039 1.3E-06 37.0 5.8 44 103-148 8-52 (74)
38 1dv0_A DNA repair protein HHR2 95.2 0.011 3.9E-07 36.3 2.4 39 104-144 4-42 (47)
39 2cpw_A CBL-interacting protein 94.9 0.037 1.3E-06 36.1 4.4 40 104-145 19-59 (64)
40 2dai_A Ubadc1, ubiquitin assoc 94.8 0.065 2.2E-06 36.7 5.8 44 103-148 28-71 (83)
41 2crn_A Ubash3A protein; compac 94.7 0.11 3.7E-06 33.9 6.3 46 102-149 7-53 (64)
42 1veg_A NEDD8 ultimate buster-1 94.7 0.034 1.2E-06 38.4 4.1 39 104-144 29-67 (83)
43 2ekk_A UBA domain from E3 ubiq 94.7 0.059 2E-06 32.7 4.7 37 104-143 9-45 (47)
44 1vdl_A Ubiquitin carboxyl-term 94.6 0.06 2.1E-06 36.6 5.0 42 107-148 27-68 (80)
45 2dkl_A Trinucleotide repeat co 94.6 0.031 1E-06 38.6 3.6 41 105-147 22-62 (85)
46 4ae4_A Ubiquitin-associated pr 93.9 0.059 2E-06 39.2 4.1 30 115-145 86-115 (118)
47 1wgn_A UBAP1, ubiquitin associ 93.8 0.077 2.6E-06 34.8 4.0 40 105-146 20-59 (63)
48 2dzl_A Protein FAM100B; UBA-li 93.3 0.1 3.5E-06 34.2 4.1 41 106-147 19-59 (66)
49 2lbc_A Ubiquitin carboxyl-term 93.1 0.14 4.6E-06 37.1 4.9 41 104-146 78-118 (126)
50 2lva_A Ubiquitin carboxyl-term 92.2 0.017 6E-07 42.7 0.0 41 108-148 22-62 (129)
51 2d9s_A CBL E3 ubiquitin protei 91.7 0.24 8.2E-06 31.4 4.1 37 107-145 12-48 (53)
52 1vek_A UBP14, ubiquitin-specif 91.7 0.47 1.6E-05 32.4 5.9 45 103-149 28-73 (84)
53 2ooa_A E3 ubiquitin-protein li 91.5 0.26 8.8E-06 31.2 4.1 37 106-144 13-49 (52)
54 1aip_C EF-TS, elongation facto 91.0 0.23 7.8E-06 39.3 4.3 38 106-144 5-42 (196)
55 2qsf_X RAD23, UV excision repa 90.6 0.21 7.3E-06 38.6 3.7 39 104-144 130-168 (171)
56 1xb2_B EF-TS, elongation facto 90.1 0.32 1.1E-05 40.5 4.6 37 106-143 6-42 (291)
57 2di0_A Activating signal coint 89.5 0.55 1.9E-05 31.4 4.6 40 107-146 16-55 (71)
58 2juj_A E3 ubiquitin-protein li 87.0 1.2 4E-05 28.5 4.6 37 107-145 10-46 (56)
59 2oo9_A E3 ubiquitin-protein li 86.9 0.96 3.3E-05 27.8 4.0 27 118-144 16-42 (46)
60 3k9o_A Ubiquitin-conjugating e 86.4 0.65 2.2E-05 36.0 4.0 36 106-143 165-200 (201)
61 2lbc_A Ubiquitin carboxyl-term 84.7 2.1 7.1E-05 30.7 5.7 41 105-147 4-45 (126)
62 1oqy_A HHR23A, UV excision rep 83.3 0.47 1.6E-05 40.5 2.0 37 105-143 169-205 (368)
63 4ae4_A Ubiquitin-associated pr 80.9 1.8 6.1E-05 31.3 4.0 37 107-145 11-47 (118)
64 1oqy_A HHR23A, UV excision rep 79.7 0.68 2.3E-05 39.5 1.7 40 104-145 325-364 (368)
65 4dbg_B Ring finger protein 31; 79.6 1.6 5.3E-05 33.5 3.5 33 114-147 111-143 (162)
66 3e46_A Ubiquitin-conjugating e 76.3 2.5 8.6E-05 34.2 4.1 35 107-143 218-252 (253)
67 4g3o_A E3 ubiquitin-protein li 76.2 4.9 0.00017 25.7 4.6 37 106-143 19-55 (58)
68 1ufz_A Hypothetical protein BA 75.2 6.8 0.00023 26.8 5.4 31 116-147 48-78 (83)
69 3bq3_A Defective in cullin ned 71.9 4.8 0.00016 32.9 4.7 42 105-147 16-57 (270)
70 2cos_A Serine/threonine protei 71.8 6.1 0.00021 25.0 4.1 34 114-148 18-52 (54)
71 3dkb_A Tumor necrosis factor, 70.3 6.6 0.00023 33.8 5.4 55 10-65 213-285 (390)
72 2ejs_A Autocrine motility fact 70.3 10 0.00035 24.2 5.0 39 106-145 15-53 (58)
73 3k6g_A Telomeric repeat-bindin 69.5 7.8 0.00027 27.7 4.7 38 107-145 16-53 (111)
74 3zrh_A Ubiquitin thioesterase 68.8 8.9 0.0003 33.6 5.9 56 10-66 280-352 (454)
75 3e7l_A Transcriptional regulat 67.5 5.9 0.0002 24.6 3.5 23 119-141 20-42 (63)
76 2qho_B E3 ubiquitin-protein li 66.1 11 0.00039 23.4 4.4 42 105-146 10-51 (53)
77 1q02_A Sequestosome 1; helical 64.3 5.3 0.00018 25.1 2.7 30 112-141 17-47 (52)
78 1umq_A Photosynthetic apparatu 62.6 7.6 0.00026 26.0 3.5 23 119-141 42-64 (81)
79 3avx_A Elongation factor TS, e 55.0 2.4 8.4E-05 41.7 -0.1 37 106-143 7-43 (1289)
80 2ekf_A Ancient ubiquitous prot 53.9 24 0.00081 22.7 4.5 39 106-145 15-53 (61)
81 2l2d_A OTU domain-containing p 53.7 26 0.0009 22.9 4.7 39 107-146 20-58 (73)
82 4dbg_B Ring finger protein 31; 51.6 17 0.00057 27.7 4.1 32 115-146 72-103 (162)
83 1oai_A Nuclear RNA export fact 49.0 38 0.0013 21.2 4.9 38 107-145 10-47 (59)
84 1eto_A FIS, factor for inversi 46.9 19 0.00065 24.7 3.5 23 119-141 59-81 (98)
85 1ntc_A Protein (nitrogen regul 41.8 13 0.00045 24.7 1.9 23 119-141 52-74 (91)
86 1nri_A Hypothetical protein HI 40.6 8 0.00027 31.3 0.8 35 107-142 247-281 (306)
87 1g2h_A Transcriptional regulat 39.3 23 0.0008 21.7 2.7 22 119-141 22-43 (61)
88 2dae_A KIAA0733 protein; mitog 34.3 47 0.0016 22.1 3.7 38 108-145 14-51 (75)
89 2jp7_A MRNA export factor MEX6 30.3 65 0.0022 20.0 3.7 38 106-144 8-45 (57)
90 2ebm_A RWD domain-containing p 24.8 1.7E+02 0.0057 19.9 6.0 48 10-57 16-67 (128)
91 2jn4_A Hypothetical protein FI 21.7 9.1 0.00031 26.4 -1.7 13 1-13 49-61 (87)
92 4a5u_A RNA replicase polyprote 21.3 1.6E+02 0.0055 22.2 5.0 49 11-62 106-156 (160)
93 3ihp_A Ubiquitin carboxyl-term 21.0 82 0.0028 29.3 4.1 27 118-144 732-758 (854)
No 1
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.77 E-value=3e-19 Score=144.75 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=63.9
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCC--cEEEccc-CCCCCceEEEEeecCccccccccCCCCCCCCCcceee
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSP--RWYIRNF-DYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIII 76 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p--~~~i~~~-~~~~~~~i~LsYh~geHYnSvr~~~~~~~gp~~p~~~ 76 (155)
|+++|+|||++||+|+|++|+++|+||+.+.+ .+.+..+ +....++|+|+||.|+|||||+++.+.+.+|+.|..|
T Consensus 95 m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~~~~~I~L~Y~g~~HYdSL~~~~d~~~~~~~~~~l 173 (219)
T 3phu_A 95 MLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREALSL 173 (219)
T ss_dssp HHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCCTTTSEEEEEETTTEEEEEEECTTTCCSCCCCCCH
T ss_pred hcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCCCCCeEEEEECCCcCchhheECCCCCCCCCcchhH
Confidence 78999999999999999999999999998876 3333222 2234789999999999999999999999999887665
No 2
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.76 E-value=4.2e-19 Score=140.55 Aligned_cols=64 Identities=20% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEE-cccCCCCCceEEEEeecCccccccccCC
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI-RNFDYHEARMIHLSYHDGEHYNGVRLKE 64 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i-~~~~~~~~~~i~LsYh~geHYnSvr~~~ 64 (155)
|+++|+|||++||+|||++|+++|+||+.+.+.+.| ........++|+|+||+++|||||+...
T Consensus 119 m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~ 183 (185)
T 3pfy_A 119 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN 183 (185)
T ss_dssp -------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred hhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence 889999999999999999999999999998755544 3333345789999999999999998754
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.75 E-value=4.9e-19 Score=139.96 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=54.7
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCc--EEEccc-CCCCCceEEEEeecCccccccccCCCCCCCCCcceee
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSPR--WYIRNF-DYHEARMIHLSYHDGEHYNGVRLKEDSCIGSARPIII 76 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~--~~i~~~-~~~~~~~i~LsYh~geHYnSvr~~~~~~~gp~~p~~~ 76 (155)
|+++|+|||++||+|+|++|+++|+||+.+.+. +.+..+ +....++|+|+||.|+|||||+.+.+.+..+..|+.|
T Consensus 95 m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~~~~~I~L~Y~g~~HYdsl~~~~~~~~~~~~~~~~ 173 (185)
T 3phx_A 95 MLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREALSL 173 (185)
T ss_dssp HTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCCTTTSEEEEEETTTEEEEEEECGGGC---------
T ss_pred hhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCCCCCEEEEEECCCcCchhceECCCCCCCCcccccH
Confidence 789999999999999999999999999987654 222222 2234789999999889999999999888776666554
No 4
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.70 E-value=1.6e-17 Score=133.58 Aligned_cols=59 Identities=17% Similarity=0.241 Sum_probs=51.2
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecC-CCcEEEcccCCCCCceEEEEeecCcccccccc
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHM-SPRWYIRNFDYHEARMIHLSYHDGEHYNGVRL 62 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~-~p~~~i~~~~~~~~~~i~LsYh~geHYnSvr~ 62 (155)
|+++|+||||+||+|||++|+++|+||+.. .|.+.+.. +. ..++|+|+|| |+|||||+.
T Consensus 80 m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~-~~-~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 80 ILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNE-DK-FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp TTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEEST-TT-CSEEEEEEEC-SSCEEEEEE
T ss_pred hcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCC-CC-CCCeEEEEEc-CCcceEEec
Confidence 899999999999999999999999999986 45555543 22 5789999999 899999998
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.40 E-value=2.7e-13 Score=110.36 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=49.4
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCcEEE--cccCCCCCceEEEEeecCccccccccCC
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSPRWYI--RNFDYHEARMIHLSYHDGEHYNGVRLKE 64 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~~~i--~~~~~~~~~~i~LsYh~geHYnSvr~~~ 64 (155)
|+..++||||+||+|||++++++|.|++++.+...+ ..++....+.|||.|+.| |||++++..
T Consensus 168 ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~LlY~pg-HYdily~~~ 232 (234)
T 1tff_A 168 VEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAAD 232 (234)
T ss_dssp TSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEEEEEETT-EEEEEEECC
T ss_pred hhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCCCCCeEEEEECCC-CceecccCC
Confidence 467899999999999999999999999998765323 235555678999999966 999999864
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.37 E-value=5.8e-13 Score=108.24 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=49.5
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCCc---EEEcccCCCCCceEEEEeecCcccccccc
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSPR---WYIRNFDYHEARMIHLSYHDGEHYNGVRL 62 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p~---~~i~~~~~~~~~~i~LsYh~geHYnSvr~ 62 (155)
++..++||||+||+|||++++++|.|++++.+. +....++....+.|+|.||.| |||++.+
T Consensus 171 ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~~~p~I~LlY~pg-HYdiLy~ 234 (234)
T 2zfy_A 171 VEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPG-HYDILYK 234 (234)
T ss_dssp TSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTTCCCSEEEEEETT-EEEEEEC
T ss_pred hhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCCCCCeEEEEECCC-CcccCCC
Confidence 456899999999999999999999999997653 443445545678899999976 9999864
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=98.64 E-value=4.8e-08 Score=81.70 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=47.4
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCC------cEE-EcccCCCCCceEEEEeecCccccccccCC
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSP------RWY-IRNFDYHEARMIHLSYHDGEHYNGVRLKE 64 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p------~~~-i~~~~~~~~~~i~LsYh~geHYnSvr~~~ 64 (155)
|+..++||||+||+|||++|+++|.|++++.. ... +........+.|+|-|.- .||+-+.+..
T Consensus 206 Ve~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~~~~~~~p~I~LLYrp-gHYDILY~~~ 275 (284)
T 4dhi_B 206 IEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQQIAPEITLLYRP-GHYDVIYKKD 275 (284)
T ss_dssp TSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESCCCSCCCCSEEEEEET-TEEEEEEECC
T ss_pred ceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCCCCCCCCCEEEEeecC-CCccccccCC
Confidence 46789999999999999999999999998642 122 211111234789999997 4999998763
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=98.55 E-value=5e-08 Score=84.39 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=47.1
Q ss_pred CCCCCccCCHHHHHHHHhhcCCcEEEEecCCC-c--EEEcccCCCCCceEEEEeecCcccccccc
Q 031691 1 METDGTWAGHMELQAASLVTHSNICIHRHMSP-R--WYIRNFDYHEARMIHLSYHDGEHYNGVRL 62 (155)
Q Consensus 1 M~~~gtWGG~~EL~A~s~~~~~~I~I~q~~~p-~--~~i~~~~~~~~~~i~LsYh~geHYnSvr~ 62 (155)
|...++||||+||+|||++|+++|.|+.++.. . +....++....+.|+|.|.-| |||.+.+
T Consensus 336 ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~~~~~~I~LLYrPg-HYDiLY~ 399 (399)
T 4ddg_A 336 VEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPG-HYDILYK 399 (399)
T ss_dssp TSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTTTCCCCCEEEEETB-EEEEEEC
T ss_pred ceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCCCCCCEEEEEEcCC-ccccCCC
Confidence 46789999999999999999999999987542 1 211223445678999999876 9998753
No 9
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.68 E-value=7.7e-05 Score=48.59 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=37.5
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
++.++.+..-..--|.+.|+.+|++|+||+|+||..||.+....
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 44566666667778999999999999999999999999987765
No 10
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.64 E-value=9.4e-05 Score=49.43 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=37.7
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCCc
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTEE 149 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~~ 149 (155)
..++.+..-..--|.+.|+.+|++|+||+|+||+.||.+.....
T Consensus 20 ~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~~~ 63 (67)
T 2dhy_A 20 QAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLESG 63 (67)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCCCC
Confidence 35666666678789999999999999999999999999886654
No 11
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.48 E-value=0.00013 Score=52.58 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=35.9
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
++.|+.||.-||| +.+.++.+|.+|+||++.||++||.-.
T Consensus 40 eekVk~L~EmtG~-seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 40 EEKVKQLIDITGK-NQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHTCC-CHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhCC-CHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4578999999998 589999999999999999999999655
No 12
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.26 E-value=0.00042 Score=45.88 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=37.6
Q ss_pred CcCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 101 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 101 ~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
..+....|+.++..||. .....+++|++++||++.||++|....
T Consensus 6 ~~it~~~Vk~LRe~TGa-g~~dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGY-SFVNCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp SCCCCHHHHHHHHHHCC-CHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 34455688999999997 599999999999999999999997653
No 13
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=97.23 E-value=0.00037 Score=43.01 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=30.0
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
.++.++ .-|..|.+.++++|+.++||++.||++|+.
T Consensus 10 ~i~~L~-~MGF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 10 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 344444 458889999999999999999999999983
No 14
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.21 E-value=0.00067 Score=42.65 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=33.1
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
.++.++.-..-.+...|+.+|+.++||+|.||..||.+..
T Consensus 7 ~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~~~ 46 (49)
T 1otr_A 7 KLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKEND 46 (49)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 4555555555558999999999999999999999999944
No 15
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.11 E-value=0.00078 Score=42.93 Aligned_cols=39 Identities=36% Similarity=0.492 Sum_probs=31.9
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
.+++.+ .-|..|.+.++++|..++||++.||++|+....
T Consensus 12 ~l~~L~-~MGF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~~ 50 (54)
T 2dah_A 12 QLEQLR-SMGFLNREANLQALIATGGDVDAAVEKLRQSSG 50 (54)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHHHHHSC
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 344443 348889999999999999999999999997643
No 16
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.07 E-value=0.00066 Score=43.96 Aligned_cols=36 Identities=19% Similarity=0.349 Sum_probs=30.2
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
.+++++ .-|..|.+.++++|+.++||++.||++|+.
T Consensus 20 qi~~L~-~MGF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 20 QLRQLN-DMGFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 344444 348889999999999999999999999986
No 17
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.01 E-value=0.00085 Score=39.29 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=29.7
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
++.|+.++.- |. +.+.++++|..++||++.|+++|+
T Consensus 5 ~~~i~~L~~m-Gf-~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-GF-DPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-TC-CHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-CC-CHHHHHHHHHHcCCCHHHHHHHHC
Confidence 3466777764 65 789999999999999999999984
No 18
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=96.99 E-value=0.00021 Score=45.88 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=26.2
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
.++.+..=.+--|.+.|+.+|+.++|++|+||++||++.+
T Consensus 15 ~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqms~ 54 (54)
T 1p3q_Q 15 TLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSLSE 54 (54)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-------
T ss_pred HHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhhcC
Confidence 4555555567779999999999999999999999999853
No 19
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.90 E-value=0.0011 Score=44.27 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=30.0
Q ss_pred cCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691 114 GSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 147 (155)
Q Consensus 114 ~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~ 147 (155)
.-|-.|.+.+.++|+.++|||++||++|+.-...
T Consensus 28 ~MGF~d~~an~~AL~at~Gnve~Ave~L~~~~~~ 61 (67)
T 2dna_A 28 AMGFVNYNANLQALIATDGDTNAAIYKLKSSQGF 61 (67)
T ss_dssp HHTCCCHHHHHHHHHHTTSCHHHHHHHHHHCCSS
T ss_pred HcCCCcHHHHHHHHHHcCCCHHHHHHHHHhCCCc
Confidence 4588899999999999999999999999986543
No 20
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.86 E-value=0.0042 Score=40.63 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=36.1
Q ss_pred cCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 102 IINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 102 ~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
..+++.|+.++. -| .+.+.++++|+.++||++.|+++|+.-....
T Consensus 7 ~~~~~~I~~L~~-MG-F~~~~a~~AL~~~~~nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 7 GVDEKALKHITE-MG-FSKEASRQALMDNGNNLEAALNVLLTSNKQK 51 (63)
T ss_dssp SSCHHHHHHHHT-TT-CCHHHHHHHHHHTTSCHHHHHHHHHHHSSCC
T ss_pred CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 355667777763 46 5899999999999999999999999876544
No 21
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.84 E-value=0.0016 Score=41.09 Aligned_cols=36 Identities=33% Similarity=0.503 Sum_probs=30.3
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 108 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 108 v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
+++++ .-|..|.+.++++|..++||++.||++|+.-
T Consensus 15 l~~L~-~MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 15 LEQLN-SMGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHH-TTTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 44444 4587799999999999999999999999863
No 22
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.81 E-value=0.0025 Score=43.03 Aligned_cols=39 Identities=26% Similarity=0.414 Sum_probs=32.8
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
.++.|++++. -| ++.+.++++|+.++||++.|+++|+.-
T Consensus 29 ~ee~I~~L~e-MG-F~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 29 SEEQIQKLVA-MG-FDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CHHHHHHHHT-TT-CCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3556777764 57 689999999999999999999999964
No 23
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.78 E-value=0.0023 Score=38.32 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.7
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+.+++.+. -| .+.+.++++|+.++||++.|+++|+.
T Consensus 6 ~~i~~L~~-MG-F~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MG-FTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TT-SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cC-CCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45666663 46 57899999999999999999999984
No 24
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.77 E-value=0.0014 Score=44.48 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=31.0
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
.+++++ .-|..|.+.++++|+.++||++.||++|+.-
T Consensus 32 qi~qL~-eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 32 ELEELK-ALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHH-HHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHH-HcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 445444 3488899999999999999999999999963
No 25
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.77 E-value=0.0015 Score=41.84 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=32.9
Q ss_pred hhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 112 MAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 112 ~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
+..-|..|.++-.++|..++||+++||+.||+...+.
T Consensus 16 L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~~~~~ 52 (54)
T 2cp8_A 16 LFEMGFCDRQLNLRLLKKHNYNILQVVTELLQLSGPS 52 (54)
T ss_dssp HHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHHSSSC
T ss_pred HHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhccCCC
Confidence 3456888999999999999999999999999987764
No 26
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.75 E-value=0.0011 Score=41.30 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=30.6
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
++.+++++ .-| .+.+.++.+|+.++||++.|+++|+.
T Consensus 9 ~~~i~~L~-~MG-F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIM-SMG-YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHH-HTT-CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHH-HcC-CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44566555 346 48999999999999999999999986
No 27
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.56 E-value=0.0021 Score=40.42 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=30.2
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
.+++++ .-|.+|.+.++++|..++||++.||++|+.
T Consensus 15 ~l~~L~-~MGF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 15 QLEQLS-AMGFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp HHHHHH-HTTCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 444444 458779999999999999999999999974
No 28
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.56 E-value=0.0019 Score=46.21 Aligned_cols=38 Identities=37% Similarity=0.544 Sum_probs=33.6
Q ss_pred CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHH
Q 031691 103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
.+++.|..||..+|| +.+..+++|++|+||+-.||.+|
T Consensus 64 i~~edi~lv~~q~~v-s~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 64 IPEDDIELVMNQTGA-SREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCHHHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHh
Confidence 456678999999999 58889999999999999999876
No 29
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.55 E-value=0.0039 Score=40.50 Aligned_cols=46 Identities=7% Similarity=0.201 Sum_probs=36.4
Q ss_pred CcCChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 101 GIINAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 101 ~~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
...++..+++++. -|. +.+.++++|+.++||++.|+++|+.-....
T Consensus 6 ~~~~~~~v~~L~~-MGF-~~~~a~~AL~~t~~nve~A~e~L~~~~~d~ 51 (63)
T 2dak_A 6 SGPPEDCVTTIVS-MGF-SRDQALKALRATNNSLERAVDWIFSHIDDL 51 (63)
T ss_dssp CCCCHHHHHHHHH-HTC-CHHHHHHHHHHTTSCSHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHhCCCCc
Confidence 3455667777764 464 799999999999999999999999865433
No 30
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.32 E-value=0.0043 Score=38.21 Aligned_cols=35 Identities=29% Similarity=0.139 Sum_probs=31.6
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEF 140 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~ 140 (155)
+.+...++-||+.|....++.|+.++.|++.|+..
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 46788899999999999999999999999999853
No 31
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=96.22 E-value=0.0055 Score=44.35 Aligned_cols=31 Identities=32% Similarity=0.533 Sum_probs=28.4
Q ss_pred cCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 114 GSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 114 ~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
.-|-.|.+.++++|+.++||++.||++|+.-
T Consensus 75 eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 75 DMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp TTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 5688899999999999999999999999964
No 32
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.20 E-value=0.007 Score=39.97 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=37.6
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 147 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~ 147 (155)
+.++..|.-|||.|....++.|+.+++|++.||...++.+..
T Consensus 20 e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~~~ 61 (67)
T 2dam_A 20 EKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQEG 61 (67)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 468899999998899999999999999999999998886554
No 33
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.88 E-value=0.017 Score=38.73 Aligned_cols=40 Identities=18% Similarity=0.425 Sum_probs=32.2
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
++..|++++. -| .+...++++|+.++||++.|+++|+.-.
T Consensus 29 ~~~~v~~L~~-MG-F~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 29 DQSSVDTLLS-FG-FAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp CHHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred CHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 4556666653 36 4899999999999999999999999743
No 34
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.74 E-value=0.039 Score=35.93 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=34.7
Q ss_pred CChhhHHHHhhcCCcCCHHHHHHHHHHh-CCCHHHHHHHHHHHhCCC
Q 031691 103 INAGSIKLVMAGSGCENSEKVEEVLLQV-GGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~-~gdid~Ai~~Ll~~~~~~ 148 (155)
.++..+++++. -| .+...++++|..+ ++|++.|+++|+.-....
T Consensus 8 ~~~~~v~~L~~-MG-F~~~~a~~AL~~t~~~nve~A~ewLl~~~~d~ 52 (64)
T 1whc_A 8 AELTALESLIE-MG-FPRGRAEKALALTGNQGIEAAMDWLMEHEDDP 52 (64)
T ss_dssp CCCCHHHHHHT-TT-CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTCS
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHHhcCCCHHHHHHHHHhCCCCc
Confidence 34557777774 46 4789999999999 799999999999865443
No 35
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=95.45 E-value=0.022 Score=34.14 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=32.7
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+.++..+.-||| +....++.|+.+++|++.||....+
T Consensus 7 ~~i~~F~~iTg~-~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 7 DALREFVAVTGA-EEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHTCC-CHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 467888999999 7999999999999999999987664
No 36
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.43 E-value=0.027 Score=36.40 Aligned_cols=42 Identities=14% Similarity=0.289 Sum_probs=36.0
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
+.++..|.-|||. ....++.|+.+++|++.||...++.....
T Consensus 17 e~i~qF~~iTg~~-~~~A~~~Le~~~WnLe~Av~~ff~~~~~~ 58 (62)
T 2dal_A 17 GLIQQFTTITGAS-ESVGKHMLEACNNNLEMAVTMFLDGGGSG 58 (62)
T ss_dssp HHHHHHHHHTCCC-HHHHHHHHHTTTSCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHcCCCHHHHHHHHHcCCCCC
Confidence 4678999999995 88999999999999999999888765443
No 37
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.37 E-value=0.039 Score=37.00 Aligned_cols=44 Identities=11% Similarity=0.284 Sum_probs=35.0
Q ss_pred CChhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHhCCC
Q 031691 103 INAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTE 148 (155)
Q Consensus 103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~~~~ 148 (155)
.++..+++++. -| .+.+.++++|..++| |++.|+++|+.-....
T Consensus 8 ~~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~~ve~A~ewL~~~~~d~ 52 (74)
T 2dag_A 8 LDESVIIQLVE-MG-FPMDACRKAVYYTGNSGAEAAMNWVMSHMDDP 52 (74)
T ss_dssp SCHHHHHHHHH-HS-CCHHHHHHHHHHHTSCCHHHHHHHHHHHTTST
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCc
Confidence 45667777664 46 479999999999997 8999999999865543
No 38
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=95.17 E-value=0.011 Score=36.32 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=30.9
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
+.++|+.++ .-| .+..+++++|.+|++|.+.|..+|+.-
T Consensus 4 e~eaI~rL~-~mG-F~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 4 EKEAIERLK-ALG-FPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp CHHHHTTTT-TTT-CCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred hHHHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445665555 235 689999999999999999999999853
No 39
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.89 E-value=0.037 Score=36.09 Aligned_cols=40 Identities=18% Similarity=0.467 Sum_probs=31.9
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHh
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQ 145 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~ 145 (155)
++..+++++. -| .+.+.++++|..++| |++.|+++|+.-.
T Consensus 19 ~e~~i~~L~~-MG-F~~~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 19 HGSALDVLLS-MG-FPRARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp CCCHHHHHHH-HT-CCHHHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred CHHHHHHHHH-cC-CCHHHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 3456666664 46 478999999999999 9999999998643
No 40
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.83 E-value=0.065 Score=36.73 Aligned_cols=44 Identities=16% Similarity=0.253 Sum_probs=35.4
Q ss_pred CChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 103 INAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
.++..+++++. -| .+...++++|..++||++.|+++|+.-....
T Consensus 28 ~~e~~i~~L~~-MG-F~~~~a~~AL~~t~~nve~A~ewL~~~~~d~ 71 (83)
T 2dai_A 28 VDEAALRQLTE-MG-FPENRATKALQLNHMSVPQAMEWLIEHAEDP 71 (83)
T ss_dssp CCHHHHHHHHH-HT-CCHHHHHHHHHHTTSCHHHHHHHHHHGGGCS
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCHHHHHHHHHHCCCCc
Confidence 45667777764 46 5789999999999999999999999865443
No 41
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.73 E-value=0.11 Score=33.89 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=35.9
Q ss_pred cCChhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHhCCCc
Q 031691 102 IINAGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTEE 149 (155)
Q Consensus 102 ~~d~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~~~~~ 149 (155)
..++..+++.+. -| .+.+.++++|..+++ |++.|+++|+.-....+
T Consensus 7 ~~~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~h~~d~d 53 (64)
T 2crn_A 7 GSSPSLLEPLLA-MG-FPVHTALKALAATGRKTAEEALAWLHDHCNDPS 53 (64)
T ss_dssp CCSCSSHHHHHH-TS-CCHHHHHHHHHHHTSCCHHHHHHHHHHHSSSTT
T ss_pred CCCHHHHHHHHH-cC-CCHHHHHHHHHHhCCCCHHHHHHHHHhCCCCcc
Confidence 335556776665 46 578999999999987 99999999998765443
No 42
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.72 E-value=0.034 Score=38.38 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=32.6
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
+++.|++++. -| .+...++.+|+.++||++.|+++|+.-
T Consensus 29 ~ee~I~~Lv~-MG-F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 29 SQESINQLVY-MG-FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CHHHHHHHHH-HS-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4566776664 36 589999999999999999999999984
No 43
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.67 E-value=0.059 Score=32.67 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=29.4
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+++.+++++. -| .+.+.++++|..+ ||++.|+++|+.
T Consensus 9 ~~~~v~~L~~-MG-F~~~~a~~AL~~~-~n~e~A~~~L~~ 45 (47)
T 2ekk_A 9 NQQQLQQLMD-MG-FTREHAMEALLNT-STMEQATEYLLT 45 (47)
T ss_dssp CHHHHHHHHH-HH-CCHHHHHHHHHHS-CSHHHHHHHHHT
T ss_pred CHHHHHHHHH-cC-CCHHHHHHHHHHc-CCHHHHHHHHHc
Confidence 4556766664 46 4679999999999 599999999984
No 44
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.64 E-value=0.06 Score=36.62 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=36.4
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
...+..+-||..|.....++|++.+||+..||.+|-+.+-..
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~~~~~ 68 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAKNAKT 68 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcccccC
Confidence 345666679999999999999999999999999998876554
No 45
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.58 E-value=0.031 Score=38.61 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=33.0
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 147 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~ 147 (155)
++.|++++. -|. +.+.++++|..+++|++.|+++|+.-...
T Consensus 22 ~~~I~qL~~-MGF-~~~~a~~AL~~~n~n~e~A~ewL~~h~~D 62 (85)
T 2dkl_A 22 SRLIKQLTD-MGF-PREPAEEALKSNNMNLDQAMSALLEKKVD 62 (85)
T ss_dssp HHHHHHHHH-HTC-CHHHHHHHHHHTTSCHHHHHHHHHTTSCC
T ss_pred HHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHHCcCC
Confidence 556666664 475 78999999999999999999999975443
No 46
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=93.90 E-value=0.059 Score=39.24 Aligned_cols=30 Identities=37% Similarity=0.438 Sum_probs=26.8
Q ss_pred CCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 115 SGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 115 tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
-| .+.++|+++|..++||+|.|++.|+.--
T Consensus 86 MG-F~~~~a~~AL~~~~nd~erAlewL~~~~ 115 (118)
T 4ae4_A 86 MG-FELKDIKEVLLLHNNDQDNALEDLMARA 115 (118)
T ss_dssp TT-CCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cC-CCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 46 6899999999999999999999998753
No 47
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.80 E-value=0.077 Score=34.80 Aligned_cols=40 Identities=20% Similarity=0.408 Sum_probs=31.2
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
+..|..++ .-| +..+.++.+|++++||||.|++.|+.-..
T Consensus 20 ~e~V~~Lv-sMG-Fs~~qA~kALKat~~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 20 RQCVETVV-NMG-YSYECVLRAMKKKGENIEQILDYLFAHSG 59 (63)
T ss_dssp HHHHHHHH-HHH-CCHHHHHHHHHHHCSCHHHHHHHHHHHSC
T ss_pred HHHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 34555555 335 57889999999999999999999987543
No 48
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.27 E-value=0.1 Score=34.20 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=34.9
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 147 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~ 147 (155)
+.+...|.-||| +....++.|+.+++|++.||....+....
T Consensus 19 ~~i~qF~~iTg~-~~~~A~~~Le~~~WdLe~Al~~ff~~~~~ 59 (66)
T 2dzl_A 19 VMINQFVLAAGC-AADQAKQLLQAAHWQFETALSTFFQETNI 59 (66)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHTTTTCHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 467889999999 67789999999999999999988765443
No 49
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=93.12 E-value=0.14 Score=37.11 Aligned_cols=41 Identities=7% Similarity=0.298 Sum_probs=33.3
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
++..++.++. -|+ +...++++|..++||++.|+++|+.-..
T Consensus 78 ~e~~v~~L~~-MGF-~~~~a~~AL~~~~~~~e~A~e~L~~~~~ 118 (126)
T 2lbc_A 78 PEEIVAIITS-MGF-QRNQAIQALRATNNNLERALDWIFSHPE 118 (126)
T ss_dssp CHHHHHHHHH-HTS-CHHHHHHHHHHHTSCHHHHHHHHHTCCS
T ss_pred CHHHHHHHHH-cCC-CHHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 4556776664 475 6999999999999999999999986444
No 50
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=92.17 E-value=0.017 Score=42.73 Aligned_cols=41 Identities=22% Similarity=0.353 Sum_probs=35.0
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCCC
Q 031691 108 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGTE 148 (155)
Q Consensus 108 v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~~ 148 (155)
+.+..+-||..|.+.+.++|++++||+..||.+|-..+...
T Consensus 22 LNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~~ 62 (129)
T 2lva_A 22 LNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVKE 62 (129)
Confidence 34555579999999999999999999999999998875544
No 51
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.70 E-value=0.24 Score=31.41 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=30.0
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
.|++.|. .| +|.+.+.++|...+||+|.|-..|+..-
T Consensus 12 ~I~~L~~-lG-F~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 12 EIERLMS-QG-YSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HHHHHHH-HT-CCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHH-cC-CCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4555552 34 6899999999999999999999998643
No 52
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=91.67 E-value=0.47 Score=32.37 Aligned_cols=45 Identities=11% Similarity=0.280 Sum_probs=34.8
Q ss_pred CChhhHHHHhhcCCcCCHHHHHHHHHHhC-CCHHHHHHHHHHHhCCCc
Q 031691 103 INAGSIKLVMAGSGCENSEKVEEVLLQVG-GDVDAAIEFLIAEQGTEE 149 (155)
Q Consensus 103 ~d~~~v~~v~~~tGc~d~~~I~~~L~~~~-gdid~Ai~~Ll~~~~~~~ 149 (155)
.++..+++++. -| .+...++++|...+ +|++.|+++|+.-....+
T Consensus 28 ~~e~~v~~L~~-MG-F~~~~a~~AL~~t~n~n~e~A~ewL~~h~~d~d 73 (84)
T 1vek_A 28 ANEEIVAQLVS-MG-FSQLHCQKAAINTSNAGVEEAMNWLLSHMDDPD 73 (84)
T ss_dssp CCHHHHHHHHH-HT-CCHHHHHHHHHHTTTCCHHHHHHHHHHHTTCST
T ss_pred CCHHHHHHHHH-cC-CCHHHHHHHHHHHcCCCHHHHHHHHHhCCCccc
Confidence 35667777774 46 47899999999885 799999999998665443
No 53
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=91.55 E-value=0.26 Score=31.16 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=30.4
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
+.|++.| +-| +|.+.+.++|...+||++-|-..|+..
T Consensus 13 ~~Ia~Lm-~mG-Fsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 13 AKIAKLM-GEG-YAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp HHHHHHH-HTT-CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHH-HcC-CCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3556666 235 689999999999999999999999864
No 54
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=91.01 E-value=0.23 Score=39.27 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=32.8
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
..|++....||. -..-.+.+|.+++||+|.||++|...
T Consensus 5 ~~VKeLRe~TGa-gmmdCKkAL~e~~GD~ekAie~LR~k 42 (196)
T 1aip_C 5 ELIKKLREATGA-GMMDVKRALEDAGWDEEKAVQLLRER 42 (196)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 357888889996 58889999999999999999999753
No 55
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=90.63 E-value=0.21 Score=38.62 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=32.1
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
+.++|+.++.- | .|..+|.++|.+|++|.+.|..+||..
T Consensus 130 e~eaI~rL~~m-G-F~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 130 DDQAISRLCEL-G-FERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp HHHHHHHHHTT-T-CCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34567766643 5 799999999999999999999999863
No 56
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=90.14 E-value=0.32 Score=40.48 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=33.1
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
..|++....||. -..-.+++|.+++||+|.||++|..
T Consensus 6 ~~VKeLRe~TGa-gmmdCKKAL~e~~GD~ekAie~LR~ 42 (291)
T 1xb2_B 6 ELLMKLRRKTGY-SFINCKKALETCGGDLKQAESWLHK 42 (291)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 357888889996 5899999999999999999999986
No 57
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=89.55 E-value=0.55 Score=31.38 Aligned_cols=40 Identities=15% Similarity=-0.069 Sum_probs=31.9
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
.|+.|..-..-.-..-|+++|..+++|+|.+|..||+.+-
T Consensus 16 ~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~L 55 (71)
T 2di0_A 16 LISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEERL 55 (71)
T ss_dssp HHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTCC
T ss_pred HHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccCC
Confidence 3455555555556889999999999999999999998654
No 58
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=87.05 E-value=1.2 Score=28.45 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=29.6
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
.|...| +-.+|.+.++++|...++||+.|-..||..-
T Consensus 10 ~Ia~L~--smGfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 10 EIENLM--SQGYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp HHHHHH--TTTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred HHHHHH--HcCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444 2237999999999999999999999998754
No 59
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=86.85 E-value=0.96 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 118 ENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 118 ~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
+|.+.++++|...++||+.|-..|+..
T Consensus 16 f~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 16 YSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp BCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 799999999999999999999999853
No 60
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=86.45 E-value=0.65 Score=36.00 Aligned_cols=36 Identities=25% Similarity=0.268 Sum_probs=28.9
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+.|++.+ .-| .|...++++|..+++|++.|+++|+.
T Consensus 165 ekV~~l~-~MG-f~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 165 KKIENLC-AMG-FDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHH-TTT-CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH-HcC-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3455444 235 58999999999999999999999985
No 61
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=84.73 E-value=2.1 Score=30.69 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=31.4
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHhCC
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGT 147 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~~~ 147 (155)
+..++..+. -| +....++++|..+++ |++.|+++|+.-...
T Consensus 4 ~~~l~~L~~-MG-F~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d 45 (126)
T 2lbc_A 4 ESSVMQLAE-MG-FPLEACRKAVYFTGNMGAEVAFNWIIVHMEE 45 (126)
T ss_dssp THHHHHHHT-TS-SCCHHHHHHHHHHTSCCHHHHHHHHHHGGGC
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCCHHHHHHHHHHhccc
Confidence 445555553 45 468999999999966 999999999986553
No 62
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=83.33 E-value=0.47 Score=40.49 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=30.8
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+..|+.+|+ -| ++.+.|+++|+..+||+|.|++||+.
T Consensus 169 ~~~i~~l~~-MG-f~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 169 ETMLTEIMS-MG-YERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHT-TT-CCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred HHHHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456666663 34 78999999999999999999999974
No 63
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=80.92 E-value=1.8 Score=31.25 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=29.5
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
.++.++ .-| +....++.+|+.+++|++.|+++|++-+
T Consensus 11 ~v~~l~-~MG-Fp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 11 CVETVV-NMG-YSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp HHHHHH-HTT-CCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHH-HcC-CCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 344444 234 5799999999999999999999999864
No 64
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=79.74 E-value=0.68 Score=39.53 Aligned_cols=40 Identities=18% Similarity=0.217 Sum_probs=32.1
Q ss_pred ChhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 104 NAGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 104 d~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
+.++|..++.- | .+..+++++|..|++|++.|+++|+.-.
T Consensus 325 e~eaI~rL~~m-G-F~~~~a~~al~a~~~n~e~A~~~L~~~~ 364 (368)
T 1oqy_A 325 EKEAIERLKAL-G-FPESLVIQAYFACEKNENLAANFLLSQN 364 (368)
T ss_dssp THHHHHHHHHH-T-CCSHHHHHHTSSSSSCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHc-C-CCHHHHHHHHHHcCCCHHHHHHHHhhCc
Confidence 45566655532 4 6899999999999999999999999754
No 65
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=79.60 E-value=1.6 Score=33.52 Aligned_cols=33 Identities=33% Similarity=0.373 Sum_probs=27.1
Q ss_pred cCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691 114 GSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 147 (155)
Q Consensus 114 ~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~ 147 (155)
..|-++..-+.++|.+++||++.|+..| +...+
T Consensus 111 s~G~~~~~~~~~aL~~~~Gdv~~Al~eL-qr~lL 143 (162)
T 4dbg_B 111 SLGFGPEEGSLQALFQHGGDVSRALTEL-QRQRL 143 (162)
T ss_dssp HTTCCGGGTHHHHHHHTTTCHHHHHHHH-HHHHT
T ss_pred hcCCchHHHHHHHHHHcCCcHHHHHHHH-HHHHh
Confidence 5688899999999999999999998754 44333
No 66
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=76.32 E-value=2.5 Score=34.17 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=28.1
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
.|+..++ -| .|.+.++.+|..+++|.+.|+++||.
T Consensus 218 ~v~~l~~-mg-f~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 218 KIENLCA-AG-FDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHH-TT-CCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHH-cC-CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4444432 24 58999999999999999999999986
No 67
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=76.24 E-value=4.9 Score=25.75 Aligned_cols=37 Identities=8% Similarity=-0.061 Sum_probs=31.3
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
+.+..|.+-..-.+.+.|+.-|+.. |+++++|+.+|.
T Consensus 19 ~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILe 55 (58)
T 4g3o_A 19 AMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHc
Confidence 3566777777778999999999987 999999999985
No 68
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=75.23 E-value=6.8 Score=26.80 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=23.5
Q ss_pred CcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691 116 GCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 147 (155)
Q Consensus 116 Gc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~ 147 (155)
.|.+. .++++..++++|++.|++++|.....
T Consensus 48 sV~e~-~Lv~ailk~dfD~ekALd~vL~~~~~ 78 (83)
T 1ufz_A 48 AVPDD-ILTEAILKHKFDVQKALSVVLEQDGS 78 (83)
T ss_dssp TSCHH-HHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred cCCHH-HHHHHHHHhcCCHHHHHHHHHhcccc
Confidence 34554 45557778999999999999987653
No 69
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=71.89 E-value=4.8 Score=32.92 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=35.6
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQGT 147 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~~ 147 (155)
.+.+++.|+-||| +....+..|+.++.|++.|+....+....
T Consensus 16 ~~~i~qF~~iTg~-~~~~A~~~L~~~~WdLe~Al~~ff~~~~~ 57 (270)
T 3bq3_A 16 QEAIESFTSLTKC-DPKVSRKYLQRNHWNINYALNDYYDKEIG 57 (270)
T ss_dssp HHHHHHHHHHHCC-CHHHHHHHHHTTTTCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHcCCCHHHHHHHHHhCccc
Confidence 3468899999998 56678889999999999999998877654
No 70
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.78 E-value=6.1 Score=24.96 Aligned_cols=34 Identities=29% Similarity=0.627 Sum_probs=28.3
Q ss_pred cCCcCCHHHHHHHHHHhCC-CHHHHHHHHHHHhCCC
Q 031691 114 GSGCENSEKVEEVLLQVGG-DVDAAIEFLIAEQGTE 148 (155)
Q Consensus 114 ~tGc~d~~~I~~~L~~~~g-did~Ai~~Ll~~~~~~ 148 (155)
.-|| |.+++..+|..-++ .++.|+++|+-+...+
T Consensus 18 eMGF-d~erae~Alk~Tg~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 18 NAGC-DQEMAGRALKQTGSRSIEAALEYISKMSGPS 52 (54)
T ss_dssp HHHC-CHHHHHHHHHHHTSCCHHHHHHHHHHHSCSC
T ss_pred HcCC-CHHHHHHHHHHhCcccHHHHHHHHHHhcCCC
Confidence 3476 78999999998877 7999999999887654
No 71
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=70.34 E-value=6.6 Score=33.83 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=37.2
Q ss_pred HHHHHHHHhhcCCcEEEEecC-------CCcEE---Ecc----c--CC--CCCceEEEEeecCccccccccCCC
Q 031691 10 HMELQAASLVTHSNICIHRHM-------SPRWY---IRN----F--DY--HEARMIHLSYHDGEHYNGVRLKED 65 (155)
Q Consensus 10 ~~EL~A~s~~~~~~I~I~q~~-------~p~~~---i~~----~--~~--~~~~~i~LsYh~geHYnSvr~~~~ 65 (155)
++-+-+||.++++||+||--. +..+- +.. . +. =.+.+|.|+|.. -||+.+..+.+
T Consensus 213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s-~HFsaLV~me~ 285 (390)
T 3dkb_A 213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPLVTLKD 285 (390)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECS-SCEEEEEEBCS
T ss_pred HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEecc-Cceeeeeeccc
Confidence 667889999999999999521 11110 110 0 11 145699999998 59999999875
No 72
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.32 E-value=10 Score=24.16 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=32.6
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
..+..|.+-..-...+.|+.=|+..+ ++++.++.+|+-.
T Consensus 15 ~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 15 AMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp HHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 35667777777789999999998887 9999999999754
No 73
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=69.52 E-value=7.8 Score=27.71 Aligned_cols=38 Identities=24% Similarity=0.385 Sum_probs=33.1
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
.++..|..+.- |+-.|-++|..+.||+.+|-.+|+.-.
T Consensus 16 ~i~~lMeef~~-DL~sVTqAlLK~SGel~at~~fL~~~~ 53 (111)
T 3k6g_A 16 IIRQLMEKFNL-DLSTVTQAFLKNSGELEATSAFLASGQ 53 (111)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHTTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHccccHHHHHHHHhCCC
Confidence 46778888774 999999999999999999999998754
No 74
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=68.84 E-value=8.9 Score=33.64 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=38.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCc---------EEEcc----c--C-C-CCCceEEEEeecCccccccccCCCC
Q 031691 10 HMELQAASLVTHSNICIHRHMSPR---------WYIRN----F--D-Y-HEARMIHLSYHDGEHYNGVRLKEDS 66 (155)
Q Consensus 10 ~~EL~A~s~~~~~~I~I~q~~~p~---------~~i~~----~--~-~-~~~~~i~LsYh~geHYnSvr~~~~~ 66 (155)
++-+-+||.++++||.||--..-+ +.+.+ . + . =.+.+|.|+|..| ||..+..+.+.
T Consensus 280 eiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g-HFsaLV~~~~~ 352 (454)
T 3zrh_A 280 QTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG-HFSALVAMEND 352 (454)
T ss_dssp HHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-EEEEEEEBCCC
T ss_pred HHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-ceeeeeecccc
Confidence 566789999999999999863211 01110 0 1 1 1457999999986 99999988764
No 75
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=67.45 E-value=5.9 Score=24.59 Aligned_cols=23 Identities=22% Similarity=0.159 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
..+.|+++|+.++||+..|-..|
T Consensus 20 E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 20 EKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 57889999999999998876654
No 76
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=66.15 E-value=11 Score=23.39 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=29.8
Q ss_pred hhhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 105 AGSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 105 ~~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
++.++.+..-.-....+.|.+-|+.-+=|+.-||-.||....
T Consensus 10 e~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRDd 51 (53)
T 2qho_B 10 EELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRDD 51 (53)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcccc
Confidence 444544444333357999999999999999999999997553
No 77
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=64.31 E-value=5.3 Score=25.06 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=22.1
Q ss_pred hhcCCcCCH-HHHHHHHHHhCCCHHHHHHHH
Q 031691 112 MAGSGCENS-EKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 112 ~~~tGc~d~-~~I~~~L~~~~gdid~Ai~~L 141 (155)
|..-|..|- .-..++|+..+|||.+|++.|
T Consensus 17 Ml~MGF~negGWLt~LL~~k~gDI~~aLD~l 47 (52)
T 1q02_A 17 MLSMGFSDEGGWLTRLLQTKNYDIGAALDTI 47 (52)
T ss_dssp HHTTTCCCTTSHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHcCCCccccHHHHHHHHccCCHHHHHHHh
Confidence 334465533 345679999999999999876
No 78
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=62.57 E-value=7.6 Score=25.98 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
..+.|+++|+.++||+..|-..|
T Consensus 42 Er~~I~~aL~~~~GN~s~AA~~L 64 (81)
T 1umq_A 42 RWEHIQRIYEMCDRNVSETARRL 64 (81)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 46789999999999998886654
No 79
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=54.97 E-value=2.4 Score=41.69 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=30.9
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIA 143 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~ 143 (155)
..|++....||. -..-.+++|.+++||+|.||++|..
T Consensus 7 ~~VKeLRe~TGa-gmmdCKKAL~e~~GD~ekAie~LRk 43 (1289)
T 3avx_A 7 SLVKELRERTGA-GMMDCKKALTEANGDIELAIENMRK 43 (1289)
T ss_dssp SCTHHHHTTTCC-CTTTTTTTTTTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467888888986 3666778999999999999999963
No 80
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.90 E-value=24 Score=22.66 Aligned_cols=39 Identities=18% Similarity=0.051 Sum_probs=31.8
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
..+..|.+-..-...+.|+.=|+..+ +|+..++.+|+-.
T Consensus 15 ~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (61)
T 2ekf_A 15 TLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGA 53 (61)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 35667777777789999999997775 9999999999644
No 81
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=53.66 E-value=26 Score=22.95 Aligned_cols=39 Identities=13% Similarity=0.095 Sum_probs=31.2
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
+++.....||| +..+.|.+|+--+-|+-+|..-.-+.++
T Consensus 20 vls~fvrstga-epgLaRDlleGKnWDl~AAL~D~eqLrq 58 (73)
T 2l2d_A 20 VLSDFVRSTGA-EPGLARDLLEGKNWDLTAALSDYEQLRQ 58 (73)
T ss_dssp HHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CcchhHHhhccCCccHhHHhhhHHHHHH
Confidence 34777889999 6999999999999999999765555444
No 82
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=51.59 E-value=17 Score=27.75 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=27.6
Q ss_pred CCcCCHHHHHHHHHHhCCCHHHHHHHHHHHhC
Q 031691 115 SGCENSEKVEEVLLQVGGDVDAAIEFLIAEQG 146 (155)
Q Consensus 115 tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~~ 146 (155)
.|.......+++|...+||++.||...+..+.
T Consensus 72 ~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~R~ 103 (162)
T 4dbg_B 72 LGAFSCQEARRAWLDRHGNLDEAVEECVRTRR 103 (162)
T ss_dssp GCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 45567799999999999999999999987654
No 83
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=49.03 E-value=38 Score=21.19 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=32.1
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
.+..++..||= +.+=-+..|++++-|.+.|+.......
T Consensus 10 mv~~~s~~Tgm-n~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 10 MLQAFSTQSGM-NLEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp HHHHHHHHHCC-CHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56777778885 788899999999999999999877654
No 84
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=46.92 E-value=19 Score=24.66 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
....|+++|+.++||+..|-..|
T Consensus 59 Er~~I~~aL~~~~gn~~~AA~~L 81 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMM 81 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHh
Confidence 57889999999999999886654
No 85
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=41.75 E-value=13 Score=24.69 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
....|+++|+.++||+..|-..|
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~~L 74 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLL 74 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHH
Confidence 57899999999999998776543
No 86
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=40.63 E-value=8 Score=31.31 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=9.6
Q ss_pred hHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHH
Q 031691 107 SIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLI 142 (155)
Q Consensus 107 ~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll 142 (155)
....|+..|||. .+.++++|++++|++--||..++
T Consensus 247 ~~~~i~~~~~~~-~~~~~~~l~~~~~~~~~a~~~~~ 281 (306)
T 1nri_A 247 AVRIVMQATDCN-KTLAEQTLLEADQNAKLAIMMIL 281 (306)
T ss_dssp HHHHHHHHSCCC-C----------------------
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHhCCChHHHHHHHH
Confidence 345788889994 66789999999999999998764
No 87
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=39.30 E-value=23 Score=21.70 Aligned_cols=22 Identities=5% Similarity=0.009 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHH
Q 031691 119 NSEKVEEVLLQVGGDVDAAIEFL 141 (155)
Q Consensus 119 d~~~I~~~L~~~~gdid~Ai~~L 141 (155)
..+.|+++|+.+ ||+..|-..|
T Consensus 22 Er~~I~~aL~~~-gn~~~aA~~L 43 (61)
T 1g2h_A 22 EAQVLKLFYAEY-PSTRKLAQRL 43 (61)
T ss_dssp HHHHHHHHHHHS-CSHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCHHHHHHHh
Confidence 468899999999 9998876543
No 88
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.29 E-value=47 Score=22.08 Aligned_cols=38 Identities=18% Similarity=0.117 Sum_probs=27.0
Q ss_pred HHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 031691 108 IKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAEQ 145 (155)
Q Consensus 108 v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~~ 145 (155)
.+...++..--=...|.+.+.++++|.|+++..|-++.
T Consensus 14 fheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES 51 (75)
T 2dae_A 14 LHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQES 51 (75)
T ss_dssp HHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHH
T ss_pred HHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhc
Confidence 34455555444456777888889999999998887764
No 89
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=30.28 E-value=65 Score=20.05 Aligned_cols=38 Identities=13% Similarity=0.003 Sum_probs=31.9
Q ss_pred hhHHHHhhcCCcCCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 106 GSIKLVMAGSGCENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 106 ~~v~~v~~~tGc~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
..|..++..||= +.+--+..|++++-|.+.|+......
T Consensus 8 ~mv~~~s~~T~M-n~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 8 ELLNKLHLETKL-NAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 356778888885 78999999999999999999887664
No 90
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.77 E-value=1.7e+02 Score=19.91 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCcEEEcccCC----CCCceEEEEeecCccc
Q 031691 10 HMELQAASLVTHSNICIHRHMSPRWYIRNFDY----HEARMIHLSYHDGEHY 57 (155)
Q Consensus 10 ~~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~----~~~~~i~LsYh~geHY 57 (155)
..||.|+.-+|.-.++++....+.+.|.-... .....+.|-+..-+-|
T Consensus 16 ~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~Y 67 (128)
T 2ebm_A 16 RNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKY 67 (128)
T ss_dssp HHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSST
T ss_pred HHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCC
Confidence 57999999999999988764445666653211 1223455555544444
No 91
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=21.72 E-value=9.1 Score=26.38 Aligned_cols=13 Identities=38% Similarity=0.879 Sum_probs=9.1
Q ss_pred CCCCCccCCHHHH
Q 031691 1 METDGTWAGHMEL 13 (155)
Q Consensus 1 M~~~gtWGG~~EL 13 (155)
|.+++.|||.+.|
T Consensus 49 ~E~~~~WGG~vtL 61 (87)
T 2jn4_A 49 MENPALWGGKVTL 61 (87)
T ss_dssp ESSSSSCSSEEEE
T ss_pred eecccccCcEEEE
Confidence 4678889996543
No 92
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=21.32 E-value=1.6e+02 Score=22.23 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCcEEEEecCCCcEEEcccCCCCCceEEEEeecCc--ccccccc
Q 031691 11 MELQAASLVTHSNICIHRHMSPRWYIRNFDYHEARMIHLSYHDGE--HYNGVRL 62 (155)
Q Consensus 11 ~EL~A~s~~~~~~I~I~q~~~p~~~i~~~~~~~~~~i~LsYh~ge--HYnSvr~ 62 (155)
..|.|+|..|.....||.... .+.++-. .....++|.|..|- ||.-..+
T Consensus 106 DhltaLa~~~~~~c~~hs~~~-~~~~Gi~--~as~~~~I~ht~G~P~HFs~~~~ 156 (160)
T 4a5u_A 106 EHLTALAHLYNFQATVYSDRG-PILFGPS--DTIKRIDITHTTGPPSHFSPGKR 156 (160)
T ss_dssp HHHHHHHHHHTEEEEEEETTE-EEEESCS--SCSEEEEEEEECSSSCEEEESCC
T ss_pred HHHHHHHHHHheEEEEEcCCc-eEEeecC--CCceEEEEEeCCCCCCCccCCcc
Confidence 568899999999999999754 3555542 35678999998764 6664433
No 93
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=20.98 E-value=82 Score=29.30 Aligned_cols=27 Identities=7% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHH
Q 031691 118 ENSEKVEEVLLQVGGDVDAAIEFLIAE 144 (155)
Q Consensus 118 ~d~~~I~~~L~~~~gdid~Ai~~Ll~~ 144 (155)
.+.+..+++|++.+||++.||+.|..-
T Consensus 732 f~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 732 FSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 578899999999999999999999874
Done!