Query 031693
Match_columns 155
No_of_seqs 142 out of 1043
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 05:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mms_A Protein (ribosomal prot 100.0 4.6E-64 1.6E-68 385.8 15.6 139 11-152 2-140 (140)
2 2ftc_G L11MT, MRP-L11, 39S rib 100.0 8.4E-64 2.9E-68 386.2 16.8 141 12-152 3-145 (145)
3 3egv_B 50S ribosomal protein L 100.0 6.5E-63 2.2E-67 381.6 7.5 140 11-153 1-140 (146)
4 1vq8_I 50S ribosomal protein L 100.0 1.1E-61 3.7E-66 380.2 8.2 136 15-153 3-138 (162)
5 3bbo_K Ribosomal protein L11; 100.0 1.4E-60 4.6E-65 388.4 14.3 141 10-153 73-213 (224)
6 3r8s_I 50S ribosomal protein L 100.0 1E-64 3.5E-69 389.7 -12.8 141 10-152 1-141 (141)
7 3j21_H 50S ribosomal protein L 100.0 8.1E-61 2.8E-65 375.9 4.5 136 15-153 4-140 (164)
8 2zkr_i 60S ribosomal protein L 100.0 1.7E-59 5.8E-64 368.7 7.4 138 11-153 7-146 (165)
9 3iz5_J 60S ribosomal protein L 100.0 2.3E-58 7.7E-63 362.6 11.1 137 12-153 8-147 (166)
10 1wib_A 60S ribosomal protein L 100.0 2.8E-36 9.4E-41 216.9 2.6 80 11-93 13-92 (92)
11 3cjs_B 50S ribosomal protein L 100.0 6.1E-35 2.1E-39 201.6 7.3 71 11-82 2-72 (72)
12 1hc8_A Ribosomal protein L11; 100.0 4E-34 1.4E-38 199.3 7.1 76 75-152 1-76 (76)
13 1qa6_A Ribosomal protein L11; 100.0 4.9E-30 1.7E-34 174.8 6.6 67 80-148 1-67 (67)
14 2k87_A Non-structural protein 54.8 15 0.00053 26.7 4.2 35 44-79 30-64 (116)
15 3d3c_J 30S ribosomal protein S 32.6 16 0.00056 24.9 1.3 26 128-153 19-44 (87)
16 3r2c_J Protein NUSE, 30S ribos 28.1 22 0.00075 24.1 1.3 26 128-153 14-39 (83)
17 3r8n_M 30S ribosomal protein S 22.3 1.3E+02 0.0046 21.3 4.7 51 81-139 25-75 (114)
No 1
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L
Probab=100.00 E-value=4.6e-64 Score=385.76 Aligned_cols=139 Identities=51% Similarity=0.757 Sum_probs=130.7
Q ss_pred cceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHHH
Q 031693 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLKK 90 (155)
Q Consensus 11 k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~likk 90 (155)
|++.++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++| .|++|||+||||+||||+|++++||+||||+|
T Consensus 2 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~-~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~k 80 (140)
T 1mms_A 2 KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADK-AGMILPVVITVYEDKSFTFIIKTPPASFLLKK 80 (140)
T ss_dssp -----CEEEEEETTCCCCTTTTTHHHHTTTCCHHHHHHHHHHHTTTS-CSSEEEEEEEECTTSCEEEEECCCCHHHHHHH
T ss_pred CceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHhhhc-CCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHH
Confidence 57889999999999999999999999999999999999999999999 49999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEec
Q 031693 91 AAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVK 152 (155)
Q Consensus 91 a~g~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~ 152 (155)
|||+++||++|+++++|+||++||||||+.|++|++ +.+|+++||+|+||||||||+|++
T Consensus 81 a~g~~~gs~~p~k~~vG~it~~qi~eIA~~K~~dl~--a~~l~~a~k~I~GTArSmGi~V~g 140 (140)
T 1mms_A 81 AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLN--ANSLEAAMKIIEGTAKSMGIEVVD 140 (140)
T ss_dssp HHTCSSCCSSTTTSCCEEECHHHHHHHHHHHGGGCC--CSSHHHHHHHHHHHHTTTTEEEC-
T ss_pred HhCCCCCCCCCCCeEeeeEcHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHcCeeEeeC
Confidence 999999999999999999999999999999999965 889999999999999999999985
No 2
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Probab=100.00 E-value=8.4e-64 Score=386.24 Aligned_cols=141 Identities=46% Similarity=0.784 Sum_probs=135.5
Q ss_pred ceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHHHH
Q 031693 12 PVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLKKA 91 (155)
Q Consensus 12 ~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~likka 91 (155)
.+.++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++|++|++|++|||+||||+||||+|++++||+||||+||
T Consensus 3 ~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~fck~fN~~T~~~~~G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~ka 82 (145)
T 2ftc_G 3 EVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILVKPDRTFEIKIGQPTVSYFLKAA 82 (145)
T ss_pred ceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhhcCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCC--CCHHHHHHHHHHhhhhcCeEEec
Q 031693 92 AGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQY--MPLESICKSIIGTAATMGIKVVK 152 (155)
Q Consensus 92 ~g~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~--~~l~~~~k~VlGTa~SmGi~V~~ 152 (155)
||+++||++|+++++|+||++||||||+.|++|+.+++ .+|+++||+|+||||||||+|++
T Consensus 83 ag~~~gs~~p~~~~vG~it~~qv~eIA~~K~~d~~l~a~~~~l~~a~k~I~GTArSmGi~V~~ 145 (145)
T 2ftc_G 83 AGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFALQDVPLSSVVRSIIGSARSLGIRVVK 145 (145)
T ss_pred hCCCCCCCCCCCcCcceEcHHHHHHHHHHhCcchhccCccCCHHHHHHHHHHHHhcCeEEEeC
Confidence 99999999999999999999999999999999844446 99999999999999999999984
No 3
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ...
Probab=100.00 E-value=6.5e-63 Score=381.58 Aligned_cols=140 Identities=41% Similarity=0.717 Sum_probs=75.1
Q ss_pred cceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHHH
Q 031693 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLKK 90 (155)
Q Consensus 11 k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~likk 90 (155)
|++.++|+|+|+||+|+|+|||||+|||+|||+|+||+|||++|++|+ |++|||+||||+||||+|++++||+||||+|
T Consensus 1 k~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~-G~~ipV~itv~~drsf~~~~~~Ppas~Ll~K 79 (146)
T 3egv_B 1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMG-DAIVPVEITIYADRSFTFVTKTPPASYLIRK 79 (146)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHTTTST-TCEEEEEEEEETTSCEEEEECCCCHHHHC--
T ss_pred CceEEEEEEEEecccccCCCCcchhhcccCCCHHHHHHHHHHHhcccC-CCEeeEEEEEeCCCeEEEEEeCCCHHHHHHH
Confidence 578999999999999999999999999999999999999999999975 9999999999999999999999999999999
Q ss_pred HhCCCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEecc
Q 031693 91 AAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVKE 153 (155)
Q Consensus 91 a~g~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~~ 153 (155)
|||+++||++|+++++|+||++||||||++|++|++ +.+|+++||+|+||||||||+|+++
T Consensus 80 a~g~~~gs~~p~~~~vG~it~~qi~eIA~~K~~d~~--a~~l~~a~k~I~GTA~SmGi~V~g~ 140 (146)
T 3egv_B 80 AAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLN--TTDLEAAARMIAGSARSMGVEVVGA 140 (146)
T ss_dssp ---------------------------------------------------------------
T ss_pred hhCCCCCCCCCCCeeeeeecHHHHHHHHHHHhhhhc--ccCHHHHHHHhHhhhhcCeEEEECC
Confidence 999999999999999999999999999999999976 8899999999999999999999986
No 4
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=100.00 E-value=1.1e-61 Score=380.23 Aligned_cols=136 Identities=30% Similarity=0.555 Sum_probs=68.6
Q ss_pred eEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHHHHhCC
Q 031693 15 ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLKKAAGI 94 (155)
Q Consensus 15 ~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~likka~g~ 94 (155)
++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++|++|+ |++|||+||||+||||+|++++||+||||+||||+
T Consensus 3 ~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~~-G~~ipV~Itv~~drsf~f~vk~Ppas~Ll~kaagi 81 (162)
T 1vq8_I 3 GTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAFD-GTEVPVTVKYDDDGSFEIEVGVPPTAELIKDEAGF 81 (162)
T ss_dssp -----------------------------------------------------------------CCCCHHHHHHHTTSC
T ss_pred eEEEEEeecCccCCCCCcccccccCCCCHHHHHHHHHHHHhhcC-CCeEEEEEEEcCCCeEEEEEcCCCHHHHHHHHhCC
Confidence 67999999999999999999999999999999999999999996 99999999999999999999999999999999999
Q ss_pred CCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEecc
Q 031693 95 ESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVKE 153 (155)
Q Consensus 95 ~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~~ 153 (155)
++||++|+++++|+||++||||||+.|++|++ +.+|+++||+|+||||||||+|+++
T Consensus 82 ~kgs~~p~k~~vG~it~~qv~eIA~~K~~dl~--a~~l~~a~k~I~GTArSmGi~V~g~ 138 (162)
T 1vq8_I 82 ETGSGEPQEDFVADLSVDQVKQIAEQKHPDLL--SYDLTNAAKEVVGTCTSLGVTIEGE 138 (162)
T ss_dssp CSCCSSTTTSCCEEECHHHHHHHHHHTTTTCC--CSSHHHHHHHHHHHTTTTTEEEC--
T ss_pred CCCCCCCCCceeeeeeHHHHHHHHHHHHHhhc--ccCHHHHHHHHHhhhHhCeEEEecc
Confidence 99999999999999999999999999999965 8899999999999999999999874
No 5
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=1.4e-60 Score=388.42 Aligned_cols=141 Identities=42% Similarity=0.650 Sum_probs=135.4
Q ss_pred ccceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHH
Q 031693 10 RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLK 89 (155)
Q Consensus 10 ~k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~lik 89 (155)
+|++.++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+||||+||+|+|++++||+||||+
T Consensus 73 akkv~~~IkL~v~aGkA~PaPPlGPaLG~~GVNim~FcK~fN~~T~d~~-Gl~IPV~ITV~~DRsf~f~vktPpaS~LLk 151 (224)
T 3bbo_K 73 AKKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADKP-GFVIPVEITVFDDKSFTFILKTPPASVLLL 151 (224)
T ss_dssp CCCCSSEEEECCBTTBCCCSTTTTTTTTTTSSCTTSSHHHHHHHGGGSC-SSBCCEEEEECSSSCEEEEECCCCTTHHHH
T ss_pred ccceEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHhcccC-CCeEEEEEEEccCCeEEEEecCCCHHHHHH
Confidence 3588999999999999999999999999999999999999999999976 999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEecc
Q 031693 90 KAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVKE 153 (155)
Q Consensus 90 ka~g~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~~ 153 (155)
||||+++||++|+++++|+||++||||||++|++|++ +.+|+++||+|+||||||||+|+++
T Consensus 152 KAagi~kGs~kp~~~~vG~IT~~qV~eIAk~K~~dl~--a~~Le~avK~IlGTArSMGi~V~g~ 213 (224)
T 3bbo_K 152 KASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLN--CTTIESAMRIIAGTAANMGIDIDPP 213 (224)
T ss_dssp HHHTCSSCCSSTTTSCCEEECHHHHHHHHHHTCTTSC--CSSHHHHHHHHHHHHTTTTEEEC--
T ss_pred HHhCCCCCCCCCCCceeeeecHHHHHHHHHHHHhhhc--CcCHHHHHHHHHHHHHhCeeEEeCC
Confidence 9999999999999999999999999999999999965 8899999999999999999999985
No 6
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Probab=100.00 E-value=1e-64 Score=389.71 Aligned_cols=141 Identities=43% Similarity=0.694 Sum_probs=137.2
Q ss_pred ccceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHH
Q 031693 10 RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLK 89 (155)
Q Consensus 10 ~k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~lik 89 (155)
+|++.++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|++|++|||+||||+||||+|++++||+||||+
T Consensus 1 akk~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~k~G~~ipV~itv~~drsf~f~vk~Ppas~Ll~ 80 (141)
T 3r8s_I 1 AKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLK 80 (141)
T ss_dssp CCCCSCCCCCCSCSSSSSCTTTTCTTSSSSSCCSSSTTTTGGGTHHHHCSCSCCCBCCCCSSSSSCCCCBCCCCSSTTTT
T ss_pred CceEEEEEEEEEecCccCCCCCcchhhccCCCCHHHHHHHHHHHHhcccCCCeEEEEEEEcCCCeEEEEEcCCCHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEec
Q 031693 90 KAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVK 152 (155)
Q Consensus 90 ka~g~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~ 152 (155)
||||+++||++|+++++|+||++||||||+.|++|++ +.+|+++||+|+||||||||+|++
T Consensus 81 ka~g~~~gs~~p~~~~vG~it~~qv~eIA~~K~~dl~--a~~l~~a~k~I~GTArSmGi~V~g 141 (141)
T 3r8s_I 81 KAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMT--GADIEAMTRSIEGTARSMGLVVED 141 (141)
T ss_dssp SSSSCSSCCSSTTTSCCSCCCSSTTSTTTSCCSSCCS--CSCTTTTTTTSTTTSSSSCCCCCC
T ss_pred HHhCCCCCCCCCCCcEeeEecHHHHHHHHHHHHhhhc--CcCHHHHHHHHHHhhhcceEEEeC
Confidence 9999999999999999999999999999999999965 889999999999999999999985
No 7
>3j21_H 50S ribosomal protein L11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.1e-61 Score=375.93 Aligned_cols=136 Identities=31% Similarity=0.549 Sum_probs=127.2
Q ss_pred eEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEe-cCCCeEEEEEeCCCHHHHHHHHhC
Q 031693 15 ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITA-FKDNTFEFTVKSPSVTWYLKKAAG 93 (155)
Q Consensus 15 ~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v-~~drsf~~~v~~Ppts~likka~g 93 (155)
++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++|+ |++|||+||| |+||||+|++++||+||||+||||
T Consensus 4 ~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~-G~~IpV~ItV~~~dRsf~f~vk~Ppas~Ll~Ka~g 82 (164)
T 3j21_H 4 QVVEVLVEGGKATPGPPLGPAIGPLGLNVKQVVDKINEATKDFA-GMQVPVKIIVDPVTKQFEIEVGVPPTSQLIKKELG 82 (164)
T ss_dssp SSSCEEEESSCCCCHHHHHHHCCCSSSCTTHHHHHHHHHHCCSS-CCEEEECBCCCTTTCCCCBCCSSSSSTTHHHHHHC
T ss_pred eEEEEEEecCccCCCCCcchhhcccCCcHHHHHHHHHHHHhhcC-CCeeEEEEEEecCCceEEEEEcCCCHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999997 9999999999 999999999999999999999999
Q ss_pred CCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEecc
Q 031693 94 IESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVKE 153 (155)
Q Consensus 94 ~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~~ 153 (155)
+++||++|+++++|+||++||||||++|++|++ +.+|+++||+|+||||||||+|+++
T Consensus 83 ~~kgs~~p~k~~vG~it~~qi~eIA~~K~~dl~--a~~l~~a~k~I~GTArSmGi~V~g~ 140 (164)
T 3j21_H 83 LEKGSGEPKHNIVGNLTMEQVIKIAKMKKDQML--ALTLKAAAKEVIGTALSMGVTVEGK 140 (164)
T ss_dssp CCSCCSSTTTCCSCCCCHHHHHHHHHHHTTTTT--CCSHHHHHHHHHHHHHCCC------
T ss_pred CCCCCCCCCCceeeeeeHHHHHHHHHHHHhhhc--ccCHHHHHHHHHHHhhcceEEEecc
Confidence 999999999999999999999999999999965 8899999999999999999999985
No 8
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K
Probab=100.00 E-value=1.7e-59 Score=368.72 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=69.5
Q ss_pred cceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHHH
Q 031693 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLKK 90 (155)
Q Consensus 11 k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~likk 90 (155)
..+.++|+|+|+||+|+|+|||||+|||+|||+|+|||+||++|++|+ |++|||+||| +||||+|++ +||+||||+|
T Consensus 7 ~~~~~~ikL~v~aG~A~p~PplGPaLG~~Gvni~~fck~fN~~T~~~~-G~~ipV~Itv-~drsf~f~v-tPpas~Ll~k 83 (165)
T 2zkr_i 7 PNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTI-QNRQAQIEV-VPSASALIIK 83 (165)
T ss_dssp ------------------------------------------------------------------CCC-CCCHHHHHHH
T ss_pred CCeeEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhcC-CCeEEEEEEE-cCCeeeEEE-CCCHHHHHHH
Confidence 457889999999999999999999999999999999999999999996 9999999999 899999999 9999999999
Q ss_pred HhCCCCCCC--CCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEecc
Q 031693 91 AAGIESGSS--RPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVKE 153 (155)
Q Consensus 91 a~g~~~gs~--~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~~ 153 (155)
|||+++||+ +|+++++|+||++||||||+.|++|++ +.+|+++||+|+||||||||+|++.
T Consensus 84 aag~~~gs~k~~p~~~~vG~it~~qv~eIA~~K~~dl~--a~~l~~a~k~I~GTArSmGi~V~g~ 146 (165)
T 2zkr_i 84 ALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSL--ARELSGTIKEILGTAQSVGCNVDGR 146 (165)
T ss_dssp HHTCSSCCSSTTTCSSCSEEECHHHHHHHHHHHTTTCC--CSSHHHHHHHHHHHHHHHTEEEC--
T ss_pred HhCCCCCCcccccCceEEeeEeHHHHHHHHHHHHHhhc--CccHHHHHHHHHHHHHhCeeEEeCC
Confidence 999999995 599999999999999999999999965 8899999999999999999999974
No 9
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_J
Probab=100.00 E-value=2.3e-58 Score=362.58 Aligned_cols=137 Identities=19% Similarity=0.305 Sum_probs=121.5
Q ss_pred ceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhh-CCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHHH
Q 031693 12 PVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQ-KYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLKK 90 (155)
Q Consensus 12 ~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~-~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~likk 90 (155)
...++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|+ +|+ |++|||+||| .||||+|++ +||+||||+|
T Consensus 8 ~~~~~ikL~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~~-G~~IpV~itV-~dRsf~f~v-~Ppas~Ll~K 84 (166)
T 3iz5_J 8 TQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWK-GLRVTVKLTV-QNRQAKVSV-VPSAAALVIK 84 (166)
T ss_dssp ----CEEEEECTTCCCCHHHHSTTCCTTTSCSSSHHHHHHHHHCSSCS-CSCEEEEEEE-ETTEEEEEC-TTTTHHHHHH
T ss_pred CceEEEEEEEecCcccCCCCcchhhccCCCCHHHHHHHHHHHhcccCC-CCeEeEEEEE-cCCeEEEEE-cCcHHHHHHH
Confidence 35678999999999999999999999999999999999999999 976 9999999999 699999999 9999999999
Q ss_pred HhCCCCCCCCCCC--eeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEecc
Q 031693 91 AAGIESGSSRPGH--VTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVKE 153 (155)
Q Consensus 91 a~g~~~gs~~p~~--~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~~ 153 (155)
|||+++||++|++ +|+|+||++||||||++|++|++ +++|+++||+|+||||||||+|+++
T Consensus 85 a~g~~~gs~~~~k~i~~vG~it~~qi~eIA~~K~~dl~--a~~l~~avk~IlGTArSmGi~V~g~ 147 (166)
T 3iz5_J 85 ALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRSM--AKEMAGTVKEILGTCVSVGCTVDGK 147 (166)
T ss_dssp HHTCCSCCSSTTTSCSSCCCCCHHHHHHHHHHHTTTSC--CSCHHHHHHHHHHHSCC--------
T ss_pred hcCCCCCCCCCCCccceeeEEeHHHHHHHHHHHHhhhc--ccCHHHHHHHhHheeeeeeEEEecC
Confidence 9999999999988 67999999999999999999965 8899999999999999999999985
No 10
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=100.00 E-value=2.8e-36 Score=216.91 Aligned_cols=80 Identities=18% Similarity=0.266 Sum_probs=77.3
Q ss_pred cceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCCCHHHHHHH
Q 031693 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLKK 90 (155)
Q Consensus 11 k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~Ppts~likk 90 (155)
.++.++|+|+|+||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+|||| ||+|+|++ +||+|+||+|
T Consensus 13 p~~~~~ikL~v~aG~A~p~pplgPaLG~~Glni~~f~k~fn~~T~~~k-G~~ipV~itv~-drsf~~~v-~PpaS~Ll~k 89 (92)
T 1wib_A 13 PNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK-GLRITVKLTIQ-NRQAQIEV-VPSASALSGP 89 (92)
T ss_dssp SSSCEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTTT-TSEEEEEEEEE-TTEEECCB-CSCCCCCCCC
T ss_pred CCeEEEEEEEEecCcccCCCCccccccccCCCHHHHHHHHHHHHhhcC-CCeEEEEEEEe-CCeeEEEE-cCCHHHHHHH
Confidence 468899999999999999999999999999999999999999999997 99999999999 99999999 9999999999
Q ss_pred HhC
Q 031693 91 AAG 93 (155)
Q Consensus 91 a~g 93 (155)
++|
T Consensus 90 ~~~ 92 (92)
T 1wib_A 90 SSG 92 (92)
T ss_dssp SCC
T ss_pred hcC
Confidence 876
No 11
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=100.00 E-value=6.1e-35 Score=201.61 Aligned_cols=71 Identities=48% Similarity=0.825 Sum_probs=69.1
Q ss_pred cceeeEEEEEeeccCCCCCCCCCcccCcCCCChhHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEEeCC
Q 031693 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSP 82 (155)
Q Consensus 11 k~~~~~ikl~v~aG~A~p~PplGP~LG~~Gin~~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v~~P 82 (155)
|++.++|+|+++||+|+|+|||||+|||+|||+|+||||||++|++|+ |++|||+|+||+||||+|++++|
T Consensus 2 k~~~~~ikl~v~aG~A~p~PplgPaLG~~Gvni~~f~k~fN~~T~~~~-G~~ipV~Itv~~drsf~~~~ktP 72 (72)
T 3cjs_B 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMG-DAIVPVEITIYADRSFTFVTKTP 72 (72)
T ss_dssp CCEEEEEEEEEETTCCCSSTTHHHHHHTTTCCHHHHHHHHHHHHGGGC-SCEEEEEEEEETTSCEEEEECCC
T ss_pred cceEEEEEEEEecCccCCCCCccchhcccCCCHHHHHHHHHHHHhhcC-CCeEeEEEEEeCCCeEEEEEcCC
Confidence 578999999999999999999999999999999999999999999995 99999999999999999999987
No 12
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A
Probab=100.00 E-value=4e-34 Score=199.34 Aligned_cols=76 Identities=41% Similarity=0.568 Sum_probs=72.2
Q ss_pred EEEEEeCCCHHHHHHHHhCCCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCeEEec
Q 031693 75 FEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGIKVVK 152 (155)
Q Consensus 75 f~~~v~~Ppts~likka~g~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi~V~~ 152 (155)
|+|++++||+||||+||||+++||++|+++++|+||++||||||+.|++|++ +.+|+++||+|+||||||||+|++
T Consensus 1 f~f~~ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~--a~~l~~a~k~I~GTArSmGi~V~~ 76 (76)
T 1hc8_A 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLN--AASIEAAMRMIEGTARSMGIVVEN 76 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHTCSCCCSSTTTCCCEEECHHHHHHHHHHSGGGCC--CSSHHHHHHHHHHHHHHHTEEEC-
T ss_pred CEEEEcCCCHHHHHHHHhCCCCCCCCCCCcEeeeecHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCeeEeeC
Confidence 7899999999999999999999999999999999999999999999999965 889999999999999999999985
No 13
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E RNA-protein interaction, minor groove binding, antibiotic binding; 2.80A {Geobacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Probab=99.96 E-value=4.9e-30 Score=174.83 Aligned_cols=67 Identities=42% Similarity=0.575 Sum_probs=64.8
Q ss_pred eCCCHHHHHHHHhCCCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHhhhhcCe
Q 031693 80 KSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIGTAATMGI 148 (155)
Q Consensus 80 ~~Ppts~likka~g~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~VlGTa~SmGi 148 (155)
++||+||||+||+|+++||++|+++++|+||++||||||+.|++|++ +.+|+++||+|+||||||||
T Consensus 1 ktPpas~Ll~kaagi~kgs~~p~~~~vG~it~~qv~eIA~~K~~dl~--a~~l~~a~k~I~GTArSmGi 67 (67)
T 1qa6_A 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLN--AASIEAAMRMIEGTARSMGI 67 (67)
T ss_dssp CCSCHHHHHHHHHTCSCCCCTTSSCCCCCCTTTHHHHHHHHHGGGCC--CSSHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCCCCCCCCCCCcccceecHHHHHHHHHHHHHhhc--ccCHHHHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999999999999965 88999999999999999997
No 14
>2k87_A Non-structural protein 3 of replicase polyprotein; structural genomics, joint center for structural genomics, J protein structure initiative; NMR {Sars coronavirus}
Probab=54.78 E-value=15 Score=26.69 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhhCCCCCCceEEEEEecCCCeEEEEE
Q 031693 44 MAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTV 79 (155)
Q Consensus 44 ~~fck~fN~~T~~~~~g~~vpV~i~v~~drsf~~~v 79 (155)
.+||++||+.+.-=+++ ..-+++|.++|-+=++.+
T Consensus 30 ~~ia~~~N~~lgf~k~~-~~~lk~T~~P~~~GDVVl 64 (116)
T 2k87_A 30 TKFADDLNQMTGFTKPA-SRELSVTFFPDLNGDVVA 64 (116)
T ss_dssp HHHHHHHHHHTTCCSSC-SEEEEEEETTCCCSSEEE
T ss_pred HHHHHHHHHHhCCCCCC-ceEEEEEECCCCCCCEEE
Confidence 58999999999754544 777888889987777665
No 15
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=32.65 E-value=16 Score=24.92 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHhhhhcCeEEecc
Q 031693 128 QYMPLESICKSIIGTAATMGIKVVKE 153 (155)
Q Consensus 128 ~~~~l~~~~k~VlGTa~SmGi~V~~~ 153 (155)
+...|+..|+.++-+|+..|+.|.|-
T Consensus 19 d~~~Ld~~~~~Iv~~ak~~g~~v~GP 44 (87)
T 3d3c_J 19 DHRLIDQATAEIVETAKRTGAQVRGP 44 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCccCCC
Confidence 46789999999999999999999763
No 16
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=28.09 E-value=22 Score=24.12 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHhhhhcCeEEecc
Q 031693 128 QYMPLESICKSIIGTAATMGIKVVKE 153 (155)
Q Consensus 128 ~~~~l~~~~k~VlGTa~SmGi~V~~~ 153 (155)
++..|+..|+.++-+|+.-|+.|.|-
T Consensus 14 d~~~Ld~~~~~Iv~~ak~~g~~v~GP 39 (83)
T 3r2c_J 14 DHRLLDQSVKQIIETVKRTGGVVKGP 39 (83)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHhCCeeeCC
Confidence 46789999999999999999999863
No 17
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=22.32 E-value=1.3e+02 Score=21.29 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHhCCCCCCCCCCCeeeecccHHHHHHHHHhcccCCCCCCCCHHHHHHHH
Q 031693 81 SPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSI 139 (155)
Q Consensus 81 ~Ppts~likka~g~~~gs~~p~~~~vG~It~~~v~eIAk~K~~d~~~~~~~l~~~~k~V 139 (155)
-+.+|..|.+.+|+.+- ..+|.+|-+|+..|-.+.. + +.-..+|...+++=
T Consensus 25 G~~~A~~I~~~~gid~~------~r~~~Lt~~ei~~l~~~i~-~-~~ie~dLr~~~~~d 75 (114)
T 3r8n_M 25 GKTRSKAILAAAGIAED------VKISELSEGQIDTLRDEVA-K-FVVEGDLRREISMS 75 (114)
T ss_dssp CHHHHHHHHHHTTCCTT------CCSTTCCHHHHHHHHHHHS-S-SCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCcc------cCcccCCHHHHHHHHHHHH-H-hcchHHHHHHHHHH
Confidence 36789999999998764 3379999999999988762 2 22234555544443
Done!