RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 031693
(155 letters)
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I*
1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I*
1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I*
1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Length = 162
Score = 164 bits (416), Expect = 6e-53
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 3/141 (2%)
Query: 13 VAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKD 72
+A TI + VP G A P PP+GP LG +++ A ++ N +T + T + VT+ D
Sbjct: 1 MAGTIEVLVPGGEANPGPPLGPELGPTPVDVQAVVQEINDQTAAF-DGTEVPVTVKYDDD 59
Query: 73 NTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPL 132
+FE V P +K AG E+GS P + +++ + +IA+ K D L
Sbjct: 60 GSFEIEVGVPPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPD--LLSYDL 117
Query: 133 ESICKSIIGTAATMGIKVVKE 153
+ K ++GT ++G+ + E
Sbjct: 118 TNAAKEVVGTCTSLGVTIEGE 138
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I*
2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I*
2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ...
Length = 141
Score = 136 bits (344), Expect = 2e-42
Identities = 60/141 (42%), Positives = 85/141 (60%), Gaps = 2/141 (1%)
Query: 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAF 70
+ V A ++L V AG A P+PPVGPALGQ +N+M FCK FNA+T + P+ V IT +
Sbjct: 2 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 61
Query: 71 KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYM 130
D +F F K+P LKKAAGI+SGS +P ++ + EIA+ K +D
Sbjct: 62 ADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTG--A 119
Query: 131 PLESICKSIIGTAATMGIKVV 151
+E++ +SI GTA +MG+ V
Sbjct: 120 DIEAMTRSIEGTARSMGLVVE 140
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase;
post-translational modification, multiple
methyltransferase; HET: SAH 4MM; 1.75A {Thermus
thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A
2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K
2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K
2xtg_K ...
Length = 146
Score = 135 bits (341), Expect = 9e-42
Identities = 59/145 (40%), Positives = 85/145 (58%), Gaps = 3/145 (2%)
Query: 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAF 70
+ V A ++L +PAG A PAPPVGPALGQ+ N+M F K FNA T + V IT +
Sbjct: 1 KKVVAVVKLQLPAGAATPAPPVGPALGQHGANIMEFVKAFNAATANMGDA-IVPVEITIY 59
Query: 71 KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYM 130
D +F F K+P ++ ++KAAG+E G+ +PG +T + + EIAK K D
Sbjct: 60 ADRSFTFVTKTPPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQKMPDLNT--T 117
Query: 131 PLESICKSIIGTAATMGIKVVKELE 155
LE+ + I G+A +MG++VV E
Sbjct: 118 DLEAAARMIAGSARSMGVEVVGAPE 142
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G
Length = 145
Score = 130 bits (327), Expect = 8e-40
Identities = 66/145 (45%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 10 RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITA 69
+ V IR V AG A P PP+GP LGQ +++ FCK+FN RT+ K P+ I
Sbjct: 1 KPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKILV 60
Query: 70 FKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPY--C 127
D TFE + P+V+++LK AAGIE G+ + G A VTLKH+YEIA++K D
Sbjct: 61 KPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAFAL 120
Query: 128 QYMPLESICKSIIGTAATMGIKVVK 152
Q +PL S+ +SIIG+A ++GI+VVK
Sbjct: 121 QDVPLSSVVRSIIGSARSLGIRVVK 145
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 224
Score = 131 bits (331), Expect = 2e-39
Identities = 61/144 (42%), Positives = 80/144 (55%), Gaps = 3/144 (2%)
Query: 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAF 70
+ V I+L + AG A PAPPVGPALG +N+MAFCKD+NART P + V IT F
Sbjct: 74 KKVIGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTADK-PGFVIPVEITVF 132
Query: 71 KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYM 130
D +F F +K+P + L KA+G E GS P +T+ + IA K D C
Sbjct: 133 DDKSFTFILKTPPASVLLLKASGAEKGSKDPQMEKVGKITIDQLRGIATEKLPDLNC--T 190
Query: 131 PLESICKSIIGTAATMGIKVVKEL 154
+ES + I GTAA MGI + +
Sbjct: 191 TIESAMRIIAGTAANMGIDIDPPI 214
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA,
ribosome, translocation, thiostrep; 2.57A {Thermotoga
maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A*
1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K
2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A
487d_L 1pn8_L 1pn7_L
Length = 140
Score = 128 bits (322), Expect = 4e-39
Identities = 71/141 (50%), Positives = 88/141 (62%), Gaps = 3/141 (2%)
Query: 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAF 70
+ VAA I+L +PAG A PAPPVGPALGQ+ +N+M FCK FNA T + V IT +
Sbjct: 2 KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAG-MILPVVITVY 60
Query: 71 KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYM 130
+D +F F +K+P ++ LKKAAGIE GSS P VT K I EIAK K D
Sbjct: 61 EDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNA--N 118
Query: 131 PLESICKSIIGTAATMGIKVV 151
LE+ K I GTA +MGI+VV
Sbjct: 119 SLEAAMKIIEGTAKSMGIEVV 139
>3iz5_J 60S ribosomal protein L12 (L11P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_J
Length = 166
Score = 118 bits (297), Expect = 7e-35
Identities = 26/137 (18%), Positives = 48/137 (35%), Gaps = 6/137 (4%)
Query: 16 TIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTF 75
+ + V G A + P +G L+ +D T K ++V +T N
Sbjct: 12 DVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTV--QNRQ 69
Query: 76 EFTVKSPSVTWYLKKAAGIESGSSRPGHVTAS--TVTLKHIYEIAKVKQSDPYCQYMPLE 133
PS + KA + ++L + EIA++ ++ +
Sbjct: 70 AKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRSMA--KEMA 127
Query: 134 SICKSIIGTAATMGIKV 150
K I+GT ++G V
Sbjct: 128 GTVKEILGTCVSVGCTV 144
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K
1s1i_K
Length = 165
Score = 112 bits (280), Expect = 2e-32
Identities = 26/137 (18%), Positives = 44/137 (32%), Gaps = 7/137 (5%)
Query: 16 TIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTF 75
+ L G + P +G L+ D T +K + +T+ N
Sbjct: 12 VVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK---GLRITVKLTIQNRQ 68
Query: 76 EFTVKSPSVTWYLKKAAGIE--SGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLE 133
PS + + KA + + +T I IA+ + L
Sbjct: 69 AQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLA--RELS 126
Query: 134 SICKSIIGTAATMGIKV 150
K I+GTA ++G V
Sbjct: 127 GTIKEILGTAQSVGCNV 143
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure,
RNA-protein; HET: GTP; 2.8A {Bacillus
stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A
1fow_A 1fox_A 1foy_A 2fow_A
Length = 76
Score = 93.4 bits (232), Expect = 4e-26
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 75 FEFTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLES 134
F F K+P LKKAAGIESGS P +T+ + EIA++K D +E+
Sbjct: 1 FTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNA--ASIEA 58
Query: 135 ICKSIIGTAATMGIKVV 151
+ I GTA +MGI V
Sbjct: 59 AMRMIEGTARSMGIVVE 75
>1qa6_A Ribosomal protein L11; ribosomal RNA, tertiary structur,E
RNA-protein interaction, minor groove binding,
antibiotic binding; 2.80A {Geobacillus
stearothermophilus} SCOP: a.4.7.1 PDB: 1c04_C
Length = 67
Score = 84.8 bits (210), Expect = 7e-23
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 80 KSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSI 139
K+P LKKAAGIESGS P +T+ + EIA++K D +E+ + I
Sbjct: 1 KTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNA--ASIEAAMRMI 58
Query: 140 IGTAATMGI 148
GTA +MGI
Sbjct: 59 EGTARSMGI 67
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11
methyltransferase; S-adenosyl-L-methionine dependent
methyltransferase; 1.37A {Thermus thermophilus} SCOP:
d.47.1.1 PDB: 3cju_B* 2bcw_A
Length = 72
Score = 80.4 bits (198), Expect = 4e-21
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAF 70
+ V A ++L +PAG A PAPPVGPALGQ+ N+M F K FNA T + V IT +
Sbjct: 2 KKVVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGD-AIVPVEITIY 60
Query: 71 KDNTFEFTVKSP 82
D +F F K+P
Sbjct: 61 ADRSFTFVTKTP 72
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, ribosome; NMR {Mus musculus} SCOP:
d.47.1.1
Length = 92
Score = 42.6 bits (100), Expect = 2e-06
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 5/79 (6%)
Query: 16 TIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDN-T 74
+ L G + P +G L+ D T +K + +T+ N
Sbjct: 18 VVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWK---GLRITVKLTIQNRQ 74
Query: 75 FEFTVKSPSVTWYLKKAAG 93
+ V PS + ++G
Sbjct: 75 AQIEV-VPSASALSGPSSG 92
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 33.0 bits (75), Expect = 0.010
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 10/75 (13%)
Query: 60 ETPMSVTITAFKDNTFEFTVKS------PSVTWYLKKAAGIESGSSRPGHVTASTVTLKH 113
P +T TF V P V W+ K + S + + S
Sbjct: 9 MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASK 68
Query: 114 IY----EIAKVKQSD 124
+Y I + +
Sbjct: 69 VYLFELHITDAQPAF 83
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 30.5 bits (68), Expect = 0.10
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%)
Query: 60 ETPMSVTITAFKDNTFEFTVKS------PSVTWYLKKAAGIESGSSRPGHVTASTVTLKH 113
+ P SV++ KD V P++ W+ K + S S S + +
Sbjct: 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASN 76
Query: 114 IY----EIAKVKQSD 124
+Y I KV D
Sbjct: 77 VYTVELHIGKVVLGD 91
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.14
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 48 KDFNARTQKYKPETPMSVTITAFKDNTFE 76
K A + Y ++ ++ I A T E
Sbjct: 23 KKLQASLKLYADDSAPALAIKA----TME 47
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 29.2 bits (65), Expect = 0.34
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 60 ETPMSVTITAFKDNTFEFTVK------SPSVTWYLKKAAGIESGSSRPGHVTASTVTLKH 113
E P T+ +D TF VK P++ W+ K + S + + + +
Sbjct: 12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSR 71
Query: 114 IY----EIAKVKQSD 124
+Y +I K K +
Sbjct: 72 VYTFEMQIIKAKDNF 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.95
Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 46/134 (34%)
Query: 45 AFCKDFNARTQKY------KPETPMSVTITAFKDNT----------FEFTVKSPSVT--- 85
+D A + K T + ++ + F + P++
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 86 -WY-------------LKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYC---- 127
W+ L K + +E ST+++ IY KVK + Y
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKE------STISIPSIYLELKVKLENEYALHRS 448
Query: 128 ---QYMPLESICKS 138
Y ++
Sbjct: 449 IVDHYNIPKTFDSD 462
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial
odontopatho hydrolase; 1.50A {Prevotella intermedia}
PDB: 3bba_A
Length = 321
Score = 28.5 bits (63), Expect = 0.99
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 67 ITAFKDNTFEFTVKSPSVTWYLKK-----AAGIESGSSRPGHVTASTVTLKHIYEIAKVK 121
+ ++ F +PS W+LK ++S + + +
Sbjct: 35 LLGVSESNF-VETDNPSFKWWLKAIDEVITNAVKSNKPLNVIKPDPSKYAAEVSTLLTTT 93
Query: 122 --QSDPYCQYMPLESICKSIIGTAAT 145
Q PY + +P + I G AT
Sbjct: 94 WGQQMPYNKLLPKTKKGRLITGAVAT 119
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase,
PKB, pleckstrin homology domain, inositol phosphate,
signal transduction; HET: 4PT; 1.45A {Homo sapiens}
SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Length = 151
Score = 26.7 bits (58), Expect = 2.9
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 46 FCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWYLK 89
+ D + K E P S + N F V +P+ T+YL
Sbjct: 80 YYVDPVNKVLK--GEIPWSQELRPEAKNFKTFFVHTPNRTYYLM 121
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 26.2 bits (57), Expect = 5.3
Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 9/68 (13%)
Query: 60 ETPMSVTITAFKDNTFEFTVK---SPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYE 116
+V + T + V + S W K ++ + ++
Sbjct: 53 YEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV------ 106
Query: 117 IAKVKQSD 124
I K+ ++
Sbjct: 107 ILKMTETQ 114
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: d.15.1.1
Length = 105
Score = 25.3 bits (55), Expect = 6.1
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 59 PETPMSVTITAFKDNTFEFTVKSPSVTWYLKKA 91
+ M+V + V + LKKA
Sbjct: 4 GSSGMTVRVCKMDGEVMPVVVVQNATVLDLKKA 36
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation,
SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A
{Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A*
1deo_A* 1pp4_A* 3c1u_A*
Length = 233
Score = 25.8 bits (56), Expect = 6.4
Identities = 9/67 (13%), Positives = 16/67 (23%), Gaps = 2/67 (2%)
Query: 12 PVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFK 71
T V + + L K F A+ K + ++
Sbjct: 83 NGRTDCSGTGAEVCYSVYDGVNETILTFPAYLENAAKLFTAKGAKVILSSQ--TPNNPWE 140
Query: 72 DNTFEFT 78
TF +
Sbjct: 141 TGTFVNS 147
>3kzp_A LMO0111 protein, putative diguanylate cyclase/phosphodiesterase;
EAL-domain, structural genomics, PSI-2; 2.00A {Listeria
monocytogenes}
Length = 235
Score = 25.5 bits (57), Expect = 7.9
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 134 SICKSIIGTAATMGIKVVKE 153
K+ A + V E
Sbjct: 186 LFIKAWANFAQKNKLDFVVE 205
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET:
EPE; 2.50A {Pseudomonas aeruginosa}
Length = 400
Score = 25.7 bits (57), Expect = 8.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 134 SICKSIIGTAATMGIKVVKE 153
++ S++ A +GI +V E
Sbjct: 333 AVISSVVALAQALGISLVVE 352
>2bas_A YKUI protein; EAL domain, structural genom protein structure
initiative, midwest center for structural genomics,
MCSG, signaling protein; 2.61A {Bacillus subtilis} SCOP:
c.1.33.1 d.110.6.2 PDB: 2w27_A*
Length = 431
Score = 25.4 bits (56), Expect = 8.7
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 133 ESICKSIIGTAATMGIKVVKE 153
E + SI A +G ++ E
Sbjct: 213 EHVLYSISLLARKIGAALLYE 233
>3gfz_A Klebsiella pneumoniae BLRP1; TIM-barrel, EAL domain, BLUF domain,
hydrolase, signaling PR; HET: C2E FMN; 2.05A {Klebsiella
pneumoniae subsp} PDB: 3gfy_A* 3gfx_A* 3gg0_A* 3gg1_A*
2kb2_A*
Length = 413
Score = 25.4 bits (56), Expect = 9.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 134 SICKSIIGTAATMGIKVVKE 153
+I S++ +GI VV E
Sbjct: 348 AIVASVVRCCEDLGITVVAE 367
>2xqy_A GH, envelope glycoprotein H; immune system-viral protein complex,
envelope protein; HET: NAG; 2.05A {Suid herpesvirus}
Length = 572
Score = 25.6 bits (55), Expect = 9.2
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 13 VAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNA 52
A +R+ P P GP G++ + + F D
Sbjct: 83 SAERMRMIAPPALGSDLEPPGPPAGRFHVYTLGFLSDGAM 122
>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain,
C-DI-GMP receptor, lyase; 2.00A {Pseudomonas
fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A
Length = 430
Score = 25.5 bits (57), Expect = 9.9
Identities = 3/20 (15%), Positives = 10/20 (50%)
Query: 134 SICKSIIGTAATMGIKVVKE 153
++I A ++ + ++ E
Sbjct: 380 LFIEAIQRAAHSIDLPLIAE 399
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.383
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,308,155
Number of extensions: 122979
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 30
Length of query: 155
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 69
Effective length of database: 4,300,587
Effective search space: 296740503
Effective search space used: 296740503
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)