RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 031693
(155 letters)
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 71
Score = 96.3 bits (240), Expect = 8e-28
Identities = 34/71 (47%), Positives = 46/71 (64%)
Query: 11 RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAF 70
+ V A ++L V AG A P+PPVGPALGQ +N+M FCK FNA+T + P+ V IT +
Sbjct: 1 KKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNAKTDSIEKGLPIPVVITVY 60
Query: 71 KDNTFEFTVKS 81
D +F F K+
Sbjct: 61 ADRSFTFVTKT 71
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 70
Score = 89.0 bits (221), Expect = 7e-25
Identities = 33/68 (48%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 13 VAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKD 72
V A ++L +PAG A PAPPVGPALGQ+ N+M F K FNA T + V IT + D
Sbjct: 4 VVAVVKLQLPAGKATPAPPVGPALGQHGANIMEFVKAFNAATANMGD-AIVPVEITIYAD 62
Query: 73 NTFEFTVK 80
+F F K
Sbjct: 63 RSFTFVTK 70
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 88.9 bits (221), Expect = 7e-25
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 77 FTVKSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESIC 136
F K+P LKKAAGIESGS P +T+ + EIA++K D +E+
Sbjct: 2 FITKTPPAAVLLKKAAGIESGSGEPNRNKVATIKRDKVREIAELKMPDLNA--ASIEAAM 59
Query: 137 KSIIGTAATMGIKV 150
+ I GTA +MGI V
Sbjct: 60 RMIEGTARSMGIVV 73
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 63
Score = 87.4 bits (217), Expect = 2e-24
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 17 IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFE 76
I+L +PAG A PAPPVGPALGQ+ +N+M FCK FNA T K + V IT ++D +F
Sbjct: 2 IKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVYEDKSFT 60
Query: 77 FTV 79
F +
Sbjct: 61 FII 63
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 86.6 bits (215), Expect = 6e-24
Identities = 36/72 (50%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 80 KSPSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSI 139
K+P ++ LKKAAGIE GSS P VT K I EIAK K D LE+ K I
Sbjct: 1 KTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPD--LNANSLEAAMKII 58
Query: 140 IGTAATMGIKVV 151
GTA +MGI+VV
Sbjct: 59 EGTAKSMGIEVV 70
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 83.1 bits (206), Expect = 1e-22
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 82 PSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIG 141
P ++ ++KAAG+E G+ +PG +T + + EIAK K P LE+ + I G
Sbjct: 2 PPASYLIRKAAGLEKGAHKPGREKVGRITWEQVLEIAKQK--MPDLNTTDLEAAARMIAG 59
Query: 142 TAATMGIK 149
+A +MG++
Sbjct: 60 SARSMGVE 67
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 81.6 bits (202), Expect = 4e-22
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 82 PSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIG 141
P LKKAAGI+SGS +P ++ + EIA+ K +D +E++ +SI G
Sbjct: 1 PPAAVLLKKAAGIKSGSGKPNKDKVGKISRAQLQEIAQTKAADMTG--ADIEAMTRSIEG 58
Query: 142 TAATMGIKV 150
TA +MG+ V
Sbjct: 59 TARSMGLVV 67
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 81.2 bits (201), Expect = 8e-22
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 82 PSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIG 141
P +++ ++KAAG+ GS+ P + + + EIAK K D LE+ ++ G
Sbjct: 1 PPMSYLIRKAAGLSKGSATPNKAKVGKLNWEQVLEIAKTKMPDLNA--GSLEAAANTVAG 58
Query: 142 TAATMGIKVV 151
TA +MG+ +
Sbjct: 59 TARSMGVTIE 68
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 70
Score = 80.8 bits (200), Expect = 9e-22
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 82 PSVTWYLKKAAGIESGSSRPGHVTASTVTLKHIYEIAKVKQSDPYCQYMPLESICKSIIG 141
P +K AG E+GS P + +++ + +IA+ K D L + K ++G
Sbjct: 3 PPTAELIKDEAGFETGSGEPQEDFVADLSVDQVKQIAEQKHPDLLS--YDLTNAAKEVVG 60
Query: 142 TAATMGIKV 150
T ++G+ +
Sbjct: 61 TCTSLGVTI 69
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 92
Score = 74.8 bits (184), Expect = 4e-19
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 16 TIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK-PETPMSVTITAFKDNT 74
+ L G + P +G L+ D T +K + +TI ++
Sbjct: 18 VVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTI---QNRQ 74
Query: 75 FEFTVKSPSVTWYLKKAAG 93
+ V PS + ++G
Sbjct: 75 AQIEV-VPSASALSGPSSG 92
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 23.7 bits (51), Expect = 4.8
Identities = 5/30 (16%), Positives = 15/30 (50%)
Query: 61 TPMSVTITAFKDNTFEFTVKSPSVTWYLKK 90
+ +++T+ + TF+ ++ LK+
Sbjct: 1 SAVTITLKTLQQQTFKIRMEPDETVKVLKE 30
>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet
shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId:
30308]}
Length = 174
Score = 24.0 bits (52), Expect = 8.3
Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 33 GPALGQYRLNLMAFCKDFNARTQKYKPETPMSVTITAFKDNTFEFTVKSPSVTWY 87
AL + ++A + + + +SV + A VK P VT++
Sbjct: 111 KNALLENGAPVIASKLEMEIMPKA-NQKHQVSVILAAMTPRRMNIIVKLPKVTYF 164
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.383
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,356
Number of extensions: 23519
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 13
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.7 bits)