BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 031694
         (155 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2R48|A Chain A, Crystal Structure Of The Fructose Specific Iib Subunit
          Of Pts System From Bacillus Subtilis Subsp. Subtilis
          Str. 168
          Length = 106

 Score = 27.3 bits (59), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 28 VPFIVAHKKASLKRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQ 87
           P  +AH   + + L+  A+R+ VSI +  QG     +  LT++   +    +I+ + S 
Sbjct: 11 CPNGIAHTYXAAENLQKAADRLGVSIKVETQG-GIGVENKLTEEEIREADAIIIAADRSV 69

Query: 88 SWERLDAGGILS 99
          + +R     +LS
Sbjct: 70 NKDRFIGKKLLS 81


>pdb|1UF9|A Chain A, Crystal Structure Of Tt1252 From Thermus Thermophilus
 pdb|1UF9|B Chain B, Crystal Structure Of Tt1252 From Thermus Thermophilus
 pdb|1UF9|C Chain C, Crystal Structure Of Tt1252 From Thermus Thermophilus
          Length = 203

 Score = 26.6 bits (57), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 125 TKAALQEAYSTPMLPLDVLAEKPTENKLE 153
           T AAL  ++  P+L LD LA +  ENK E
Sbjct: 23  TVAALLRSWGYPVLDLDALAARARENKEE 51


>pdb|3PRX|A Chain A, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PRX|C Chain C, Structure Of Complement C5 In Complex With Cvf And Ssl7
 pdb|3PVM|A Chain A, Structure Of Complement C5 In Complex With Cvf
 pdb|3PVM|C Chain C, Structure Of Complement C5 In Complex With Cvf
          Length = 1676

 Score = 26.6 bits (57), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWE 90
          K  + GA   S +I I   G + A+D +++  S+P  KF   SG++  S E
Sbjct: 29 KIFRVGA---SENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSE 76


>pdb|3CU7|A Chain A, Human Complement Component 5
 pdb|3CU7|B Chain B, Human Complement Component 5
 pdb|3KLS|A Chain A, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KLS|B Chain B, Structure Of Complement C5 In Complex With Ssl7
 pdb|3KM9|A Chain A, Structure Of Complement C5 In Complex With The
          C-Terminal Beta-Grasp Domain Of Ssl7
 pdb|3KM9|B Chain B, Structure Of Complement C5 In Complex With The
          C-Terminal Beta-Grasp Domain Of Ssl7
 pdb|4E0S|A Chain A, Crystal Structure Of C5b-6
          Length = 1676

 Score = 26.6 bits (57), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWE 90
          K  + GA   S +I I   G + A+D +++  S+P  KF   SG++  S E
Sbjct: 29 KIFRVGA---SENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSE 76


>pdb|4A5W|A Chain A, Crystal Structure Of C5b6
          Length = 1580

 Score = 26.6 bits (57), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 40 KRLKSGAERISVSIDIHNQGTSTAYDVSLTDDSWPQDKFDVISGNISQSWER 91
          K  + GA   S +I I   G + A+D +++  S+P  KF   SG++  S E 
Sbjct: 11 KIFRVGA---SENIVIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSEN 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,944,324
Number of Sequences: 62578
Number of extensions: 147871
Number of successful extensions: 216
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 6
length of query: 155
length of database: 14,973,337
effective HSP length: 91
effective length of query: 64
effective length of database: 9,278,739
effective search space: 593839296
effective search space used: 593839296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)