AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>031695
MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV
EIKYLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFI
KFTQVSTYELSLSFSCNFYTMVFIYLFRIVNHGYD
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT4G14420 AT4G14420 AT4G14420	protein from Arabidopsis thaliana	1.5e-35
BLAST match view associations BLAST with AT1G04340 AT1G04340 AT1G04340	protein from Arabidopsis thaliana	1.2e-24
BLAST match view associations BLAST with AT5G43460 AT5G43460 AT5G43460	protein from Arabidopsis thaliana	6.3e-21
BLAST match view associations BLAST with AT3G23190 AT3G23190 AT3G23190	protein from Arabidopsis thaliana	5.7e-13
BLAST match view associations BLAST with AT3G23180 AT3G23180 AT3G23180	protein from Arabidopsis thaliana	1.2e-10
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  031695
        (155 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2129720 - symbol:AT4G14420 "AT4G14420" species...   384  1.5e-35   1
TAIR|locus:2018364 - symbol:AT1G04340 "AT1G04340" species...   281  1.2e-24   1
TAIR|locus:2176476 - symbol:AT5G43460 "AT5G43460" species...   246  6.3e-21   1
TAIR|locus:2086248 - symbol:AT3G23190 "AT3G23190" species...    99  5.7e-13   2
TAIR|locus:2086238 - symbol:AT3G23180 "AT3G23180" species...   149  1.2e-10   1


>TAIR|locus:2129720 [details] [associations]
            symbol:AT4G14420 "AT4G14420" species:3702 "Arabidopsis
            thaliana" [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=IDA] [GO:0006457 "protein
            folding" evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
            [GO:0009627 "systemic acquired resistance" evidence=RCA]
            [GO:0009644 "response to high light intensity" evidence=RCA]
            [GO:0034976 "response to endoplasmic reticulum stress"
            evidence=RCA] [GO:0042542 "response to hydrogen peroxide"
            evidence=RCA] Pfam:PF05514 GO:GO:0005783 GO:GO:0005794
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:Z97336 EMBL:AL161539
            HOGENOM:HOG000239736 ProtClustDB:CLSN2681782 InterPro:IPR008637
            EMBL:AY045601 EMBL:AY090326 EMBL:AY085699 IPI:IPI00521447
            PIR:C71406 RefSeq:NP_193178.1 UniGene:At.4273 STRING:O23298
            PaxDb:O23298 PRIDE:O23298 EnsemblPlants:AT4G14420.1 GeneID:827087
            KEGG:ath:AT4G14420 TAIR:At4g14420 eggNOG:NOG299458
            InParanoid:O23298 OMA:DFYNYDV PhylomeDB:O23298 ArrayExpress:O23298
            Genevestigator:O23298 Uniprot:O23298
        Length = 158

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 73/124 (58%), Positives = 86/124 (69%)

Query:     1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
             M   SF+GR LF S+FLLSAWQEFN+FG DGG +AKSL+PKF+ F  HV +HTG Q+P V
Sbjct:     1 MELASFLGRALFVSVFLLSAWQEFNDFGEDGGRSAKSLKPKFNAFVNHVTTHTGQQLPPV 60

Query:    61 EIKYLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
             ++K LV                      YLLLLHQA+ATPILYDFYNYD D+KEFGQ+F 
Sbjct:    61 DMKILVAAAIALKGIGGLLFVFGSSLGAYLLLLHQAVATPILYDFYNYDVDRKEFGQLFS 120

Query:   121 KFTQ 124
             KFTQ
Sbjct:   121 KFTQ 124


>TAIR|locus:2018364 [details] [associations]
            symbol:AT1G04340 "AT1G04340" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] Pfam:PF05514 EMBL:CP002684 GenomeReviews:CT485782_GR
            EMBL:AC000104 EMBL:AY070751 EMBL:AY093738 IPI:IPI00520851
            PIR:H86174 RefSeq:NP_171929.1 UniGene:At.28333 IntAct:O22690
            STRING:O22690 PaxDb:O22690 PRIDE:O22690 EnsemblPlants:AT1G04340.1
            GeneID:839547 KEGG:ath:AT1G04340 TAIR:At1g04340 eggNOG:NOG151030
            HOGENOM:HOG000239736 InParanoid:O22690 OMA:PEDRQFS PhylomeDB:O22690
            ProtClustDB:CLSN2681782 Genevestigator:O22690 InterPro:IPR008637
            Uniprot:O22690
        Length = 159

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 54/124 (43%), Positives = 74/124 (59%)

Query:     1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
             M F SF+GRVLFAS+F+LSAWQ FN+FG DGGPAAK L PK  +   H+ S  GV +P++
Sbjct:     1 MGFFSFLGRVLFASLFILSAWQMFNDFGTDGGPAAKELAPKLDLTKAHLSSILGVSLPNL 60

Query:    61 EIKYLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
             E+K +V                      YLL ++  + +PILYDFYNY  + ++F  +  
Sbjct:    61 EVKQVVWAIVALKGLGGLLFVIGNIFGAYLLAVYLVVVSPILYDFYNYGPEDRQFSLLLT 120

Query:   121 KFTQ 124
             +F Q
Sbjct:   121 EFLQ 124


>TAIR|locus:2176476 [details] [associations]
            symbol:AT5G43460 "AT5G43460" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0005794 "Golgi apparatus" evidence=RCA] Pfam:PF05514
            GO:GO:0005783 EMBL:CP002688 EMBL:AB025638 ProtClustDB:CLSN2681782
            InterPro:IPR008637 EMBL:AY057586 EMBL:BT010160 IPI:IPI00541647
            RefSeq:NP_199159.1 UniGene:At.7158 IntAct:Q9LSW5 STRING:Q9LSW5
            EnsemblPlants:AT5G43460.1 GeneID:834366 KEGG:ath:AT5G43460
            TAIR:At5g43460 InParanoid:Q9LSW5 OMA:PQERHFS PhylomeDB:Q9LSW5
            Genevestigator:Q9LSW5 Uniprot:Q9LSW5
        Length = 154

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 54/135 (40%), Positives = 72/135 (53%)

Query:     1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDV 60
             M F SF+GRVLFAS+F+LSAWQ FN    DGGPAAK L PK  +   H+ S  GV +P +
Sbjct:     1 MGFFSFLGRVLFASLFILSAWQMFN----DGGPAAKELAPKLDLVKAHLSSRLGVTLPKI 56

Query:    61 EIKYLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPILYDFYNYDADKKEFGQIFI 120
             E++ +V                      YLL  +  +  PILYDFYNY   ++ F  +  
Sbjct:    57 EVRQVVATIIALKGVGGLLFVIGNTFGAYLLASYLVVFGPILYDFYNYGPQERHFSLLLT 116

Query:   121 KFTQ-VSTYELSLSF 134
             +F Q V+ +   L F
Sbjct:   117 EFLQSVALFGALLFF 131


>TAIR|locus:2086248 [details] [associations]
            symbol:AT3G23190 "AT3G23190" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005783 "endoplasmic reticulum" evidence=IDA]
            [GO:0006826 "iron ion transport" evidence=RCA] [GO:0009736
            "cytokinin mediated signaling pathway" evidence=RCA] [GO:0010106
            "cellular response to iron ion starvation" evidence=RCA]
            [GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
            "nitrate transport" evidence=RCA] Pfam:PF05514 GO:GO:0005783
            EMBL:CP002686 EMBL:AB025608 InterPro:IPR008637 EMBL:BT012182
            IPI:IPI00547406 RefSeq:NP_188960.1 UniGene:At.27638 PRIDE:Q9LTC9
            EnsemblPlants:AT3G23190.1 GeneID:821897 KEGG:ath:AT3G23190
            TAIR:At3g23190 OMA:SAWREYY PhylomeDB:Q9LTC9 ProtClustDB:CLSN2684307
            Genevestigator:Q9LTC9 Uniprot:Q9LTC9
        Length = 216

 Score = 99 (39.9 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
 Identities = 22/55 (40%), Positives = 31/55 (56%)

Query:    90 LLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQV--STYELSLSFSCNFYTMV 142
             LLL++QA+ +PILYDFYN D D+  F   + KF +    T       + + YT V
Sbjct:    90 LLLVYQAILSPILYDFYNRDYDRDHFTVFYTKFKEFVEETTSADGGVAMSLYTSV 144

 Score = 92 (37.4 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
 Identities = 21/45 (46%), Positives = 28/45 (62%)

Query:     1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIF 45
             M ++   GRV+FAS FL+SAW+E+  FG+    AA  L PK   F
Sbjct:    18 MPYLMPAGRVVFASAFLVSAWREYYGFGL----AADELRPKLGFF 58


>TAIR|locus:2086238 [details] [associations]
            symbol:AT3G23180 "AT3G23180" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0006952 "defense response"
            evidence=ISS] [GO:0016020 "membrane" evidence=ISS] [GO:0005783
            "endoplasmic reticulum" evidence=IDA] Pfam:PF05514 GO:GO:0005783
            EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB025608
            InterPro:IPR008637 ProtClustDB:CLSN2684307 IPI:IPI00520241
            RefSeq:NP_188959.3 UniGene:At.53450 PaxDb:Q9LTD0 PRIDE:Q9LTD0
            EnsemblPlants:AT3G23180.1 GeneID:821896 KEGG:ath:AT3G23180
            TAIR:At3g23180 eggNOG:NOG250612 HOGENOM:HOG000153095 OMA:ELADHAM
            PhylomeDB:Q9LTD0 Genevestigator:Q9LTD0 Uniprot:Q9LTD0
        Length = 217

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 39/140 (27%), Positives = 64/140 (45%)

Query:     4 VSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIK 63
             V  +GR LFAS F LS+W ++ E   +         PKF         ++G Q     IK
Sbjct:    21 VETIGRALFASSFFLSSWHDYMELKANWNGTEDYWSPKF--------GYSGDQ-----IK 67

Query:    64 YLVXXXXXXXXXXXXXXXXXXXXXXYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFT 123
             +L+                      +LLL++Q +AT + +DFYN+  D +EFG +++K  
Sbjct:    68 HLMTVSIIVRTLGGLIFIYGSFFGAFLLLMYQGIATMVHHDFYNHRLDTEEFGLLYLKLK 127

Query:   124 QVSTYELSLSFSCNFYTMVF 143
             ++    +S + + N Y   F
Sbjct:   128 RILNETVSYNTAYNLYKSDF 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.330   0.144   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      155       133   0.00091  102 3  11 22  0.45    30
                                                     30  0.43    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.15u 0.09s 12.24t   Elapsed:  00:00:02
  Total cpu time:  12.15u 0.09s 12.24t   Elapsed:  00:00:02
  Start:  Thu May  9 19:40:39 2013   End:  Thu May  9 19:40:41 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
