Query 031695
Match_columns 155
No_of_seqs 102 out of 216
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:05:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05514 HR_lesion: HR-like le 100.0 6.9E-46 1.5E-50 285.1 14.6 137 1-137 1-137 (138)
2 COG2259 Predicted membrane pro 99.6 2.6E-15 5.6E-20 115.3 11.4 111 2-138 13-126 (142)
3 PF07681 DoxX: DoxX; InterPro 99.2 9.9E-11 2.2E-15 81.4 8.6 80 5-104 2-85 (85)
4 PF02077 SURF4: SURF4 family; 98.9 1.3E-08 2.8E-13 86.3 11.6 67 72-138 185-253 (267)
5 PF02077 SURF4: SURF4 family; 97.9 6.1E-05 1.3E-09 64.1 8.1 108 2-137 20-129 (267)
6 PF07291 MauE: Methylamine uti 97.8 0.00047 1E-08 55.4 11.1 115 2-134 7-133 (184)
7 KOG3998 Putative cargo transpo 97.6 0.00016 3.4E-09 61.3 6.1 67 71-137 184-255 (270)
8 KOG3998 Putative cargo transpo 97.3 0.00075 1.6E-08 57.3 6.8 109 2-138 23-133 (270)
9 PF13564 DoxX_2: DoxX-like fam 96.9 0.01 2.2E-07 42.5 8.9 73 8-103 2-81 (103)
10 COG4270 Predicted membrane pro 95.7 0.043 9.3E-07 41.9 6.5 73 7-100 8-82 (131)
11 PF15111 TMEM101: TMEM101 prot 90.8 1.3 2.8E-05 37.6 7.4 107 6-135 137-248 (251)
12 PF13781 DoxX_3: DoxX-like fam 90.1 2.2 4.7E-05 31.1 7.4 71 50-131 24-100 (102)
13 PF04224 DUF417: Protein of un 86.9 15 0.00032 29.8 10.8 126 5-137 15-168 (175)
14 PF04173 DoxD: TQO small subun 63.1 78 0.0017 25.4 12.1 97 6-107 3-109 (167)
15 PF11694 DUF3290: Protein of u 40.8 1.3E+02 0.0029 23.4 6.6 41 86-127 49-89 (149)
16 PF14927 Neurensin: Neurensin 40.5 1.4E+02 0.0031 23.2 6.6 70 10-91 48-117 (140)
17 PRK02237 hypothetical protein; 36.0 1.5E+02 0.0032 22.3 5.8 41 65-107 8-57 (109)
18 COG3059 Predicted membrane pro 35.8 2.1E+02 0.0047 23.2 7.0 124 6-138 18-172 (182)
19 TIGR00814 stp serine transport 34.4 3.3E+02 0.0072 24.1 10.4 81 69-151 12-105 (397)
20 PRK10692 hypothetical protein; 32.4 2E+02 0.0043 21.0 5.8 53 3-87 12-64 (92)
21 PF10762 DUF2583: Protein of u 31.4 65 0.0014 23.4 3.1 29 55-87 36-64 (89)
22 PF09933 DUF2165: Predicted sm 30.1 1.4E+02 0.0031 23.6 5.2 71 11-84 13-84 (160)
23 PF04923 Ninjurin: Ninjurin ; 25.5 2.7E+02 0.006 20.4 6.8 54 64-140 46-100 (104)
24 PRK12585 putative monovalent c 23.1 4.4E+02 0.0094 21.8 8.1 18 85-102 67-84 (197)
25 KOG4580 Component of vacuolar 22.3 2.7E+02 0.0058 21.1 5.1 40 66-107 24-63 (112)
No 1
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=100.00 E-value=6.9e-46 Score=285.13 Aligned_cols=137 Identities=66% Similarity=1.072 Sum_probs=134.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 031695 1 MAFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLF 80 (155)
Q Consensus 1 M~~l~~lGRvLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~ 80 (155)
||+++++||+||+++|++|+|||+++++.++||++|+++||++.+++|+++++|+++|+++.+.++.++|++|++||+++
T Consensus 1 M~f~sf~GRvLFAs~FllSA~q~f~~fg~dGgpaak~l~Pkl~~~~~~i~s~lG~~vp~~~~k~lv~~~i~lkglGgiLF 80 (138)
T PF05514_consen 1 MGFSSFVGRVLFASVFLLSAWQKFNEFGDDGGPAAKALAPKLNVFKKHISSKLGVQVPHIDVKHLVAAAIALKGLGGILF 80 (138)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHchhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031695 81 IFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQVSTYELSLSFSCN 137 (155)
Q Consensus 81 i~G~~~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~KNlal~GgLL~~~~ 137 (155)
++|+++||++|++|++++||++|||||+|.|++|+.+++++|+||+|++||||+++.
T Consensus 81 i~gss~GA~LLll~l~~~Tpi~~dFyn~~~~~~e~~~~l~~F~qnlAL~GALLfFlg 137 (138)
T PF05514_consen 81 IFGSSFGAYLLLLYLAIVTPILYDFYNYDSESAEFVQLLIMFLQNLALFGALLFFLG 137 (138)
T ss_pred HhcchhHHHHHHHHHHHHHHHhhhhhccCCChhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998763
No 2
>COG2259 Predicted membrane protein [Function unknown]
Probab=99.64 E-value=2.6e-15 Score=115.27 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=92.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhh-ccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 031695 2 AFVSFVGRVLFASIFLLSAWQEFN-EFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLF 80 (155)
Q Consensus 2 ~~l~~lGRvLfa~lFl~SG~~kl~-~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~ 80 (155)
+...++.|++++.+|+.+|++|+. +++++.++.. +.|.|.|.. .+..++..|++||+++
T Consensus 13 ~~~lli~Rl~l~~~fi~~G~~K~~~~~~g~~~~~~----------------~~g~p~~~~----~a~~~~~~El~~glll 72 (142)
T COG2259 13 DLGLLILRLLLALIFIVSGLGKLFGGLAGTIQYFE----------------SLGLPPPTL----LAILAAILELVGGLLL 72 (142)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHccCcHHHHHHHH----------------HcCCChHHH----HHHHHHHHHHHHHHHH
Confidence 356789999999999999999999 7777655442 578888863 5677889999999999
Q ss_pred HHhh--HHHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031695 81 IFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQVSTYELSLSFSCNF 138 (155)
Q Consensus 81 i~G~--~~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~KNlal~GgLL~~~~~ 138 (155)
++|. |++|..+++|+++++...|.+|+... .+ + +.|.||++++|+++.....
T Consensus 73 llGl~tr~aA~~l~~~~l~a~~~~h~~~~~~~--~~---~-~~~~~~l~~~~~~l~l~~~ 126 (142)
T COG2259 73 LLGLFTRLAALVLAVFMLVAIFAVHAFWGFFG--LA---N-NGFEKNLLLIGGLLLLAIT 126 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc--cc---c-hhHHHHHHHHHHHHHHHhc
Confidence 9996 99999999999999999999998421 11 1 6899999999999887653
No 3
>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []. They are predicted inner membrane proteins.
Probab=99.21 E-value=9.9e-11 Score=81.38 Aligned_cols=80 Identities=23% Similarity=0.257 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--cccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 031695 5 SFVGRVLFASIFLLSAWQEFNE--FGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIF 82 (155)
Q Consensus 5 ~~lGRvLfa~lFl~SG~~kl~~--~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i~ 82 (155)
.++.|++++..|+.+|++|+.+ ++++. +.++ ..|.|.|+ .....+...|+++|+++++
T Consensus 2 ll~~Ri~lg~~f~~~G~~K~~~~~~~~~~---------------~~~~-~~~~~~~~----~~~~~~~~~E~~~gl~l~~ 61 (85)
T PF07681_consen 2 LLILRILLGLVFLFHGLQKLFGFGPEGFA---------------GFFA-PFGLPPPG----LFAYLAGIAELVGGLLLLL 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHH---------------HHHH-HcCCCchH----HHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999995 44322 2222 45766665 4578888999999999999
Q ss_pred hh--HHHHHHHHHHHHHHHhhhcc
Q 031695 83 GS--SFGAYLLLLHQALATPILYD 104 (155)
Q Consensus 83 G~--~~gA~lLa~F~~~~T~i~Hd 104 (155)
|. |++|..++.+++.+++.+|+
T Consensus 62 G~~tr~aa~~~~~~~~~~~~~~H~ 85 (85)
T PF07681_consen 62 GLFTRLAALVLALFMLVATFFVHW 85 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcC
Confidence 95 89999999999999999996
No 4
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=98.93 E-value=1.3e-08 Score=86.28 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031695 72 LKGIGGLLFIFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQVSTYELSLSFSCNF 138 (155)
Q Consensus 72 ~e~~Ggll~i~G~--~~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~KNlal~GgLL~~~~~ 138 (155)
+..+..++++.|+ ++.|.+|.+.+.......|+||+++.+.+.+.-.--+|+||++++||+|+..|.
T Consensus 185 ~g~~l~i~v~vGyktk~~A~~Lv~~L~~~n~~~n~fW~~~~~~~~~dflkydFfq~lSviGGLLllv~~ 253 (267)
T PF02077_consen 185 VGLALCILVVVGYKTKLSALLLVLWLSIYNVFVNNFWFYPSDSPMRDFLKYDFFQTLSVIGGLLLLVNL 253 (267)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444457888997 799999999999999999999998654443322235999999999999998774
No 5
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=97.88 E-value=6.1e-05 Score=64.07 Aligned_cols=108 Identities=12% Similarity=0.066 Sum_probs=83.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031695 2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI 81 (155)
Q Consensus 2 ~~l~~lGRvLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i 81 (155)
|++..+||.++.+-|+=-|++...+|..-..|. +...+ .|.......+..-+..|++|+++++
T Consensus 20 ~~LP~iaR~~iVsTFlED~lRi~~QW~~Q~~yl---------------~~~w~--~~~~la~lfl~~n~i~ql~gs~LVl 82 (267)
T PF02077_consen 20 PYLPTIARFLIVSTFLEDGLRIWFQWSDQVDYL---------------QNSWH--CGWFLAVLFLLLNIIGQLVGSILVL 82 (267)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------HHhcC--CChHHHHHHHHHHHHHHhhhhheEe
Confidence 678899999999999999999999999533333 33344 4444455667888889999999988
Q ss_pred Hhh--HHHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031695 82 FGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQVSTYELSLSFSCN 137 (155)
Q Consensus 82 ~G~--~~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~KNlal~GgLL~~~~ 137 (155)
+-. ..+..+|..-.+.=+...+-+|+ ..-+++|++++||++++++
T Consensus 83 ~rk~~~~a~~~L~~vvvlQ~i~Y~l~~d-----------~~fllRnlsviGgLLLl~a 129 (267)
T PF02077_consen 83 LRKKVEYACGLLFGVVVLQTIAYGLLWD-----------LKFLLRNLSVIGGLLLLLA 129 (267)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHH
Confidence 764 46777777777777777766775 5679999999999999886
No 6
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=97.76 E-value=0.00047 Score=55.39 Aligned_cols=115 Identities=20% Similarity=0.162 Sum_probs=74.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031695 2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI 81 (155)
Q Consensus 2 ~~l~~lGRvLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i 81 (155)
|.+..+.|++++.+|+.+|+.|+.|++... +++++ ..+ +|+...+.+...-..+|++.|++++
T Consensus 7 P~v~~~~r~~l~llf~~aai~Kl~d~~~F~---------------~~i~~-y~l-lP~~~~~~~A~~lP~~El~~gl~Ll 69 (184)
T PF07291_consen 7 PVVSLLLRLFLALLFLYAAISKLRDPEAFA---------------ASIAA-YRL-LPDWLVRPVAWALPWLELALGLLLL 69 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCHHHHH---------------HHHHH-ccc-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999988432 22221 111 3443344556667789999999999
Q ss_pred Hhh--H----HHHHHHHHHHHHHHhhhcccC-CCC-----hhhhHHHHHHHHHHHHHHHHHHHHH
Q 031695 82 FGS--S----FGAYLLLLHQALATPILYDFY-NYD-----ADKKEFGQIFIKFTQVSTYELSLSF 134 (155)
Q Consensus 82 ~G~--~----~gA~lLa~F~~~~T~i~HdFW-n~~-----~~~~~~~~~~~~F~KNlal~GgLL~ 134 (155)
++. + ..+.++.+|++..+.....-- +.| ...++. ..-.+..+|+.+.+..+.
T Consensus 70 ~~~~~~~a~~~a~~Ll~~F~~ai~~~~~rg~~~idCGCfG~~~~~~-l~~~~v~Rn~~L~~~al~ 133 (184)
T PF07291_consen 70 FPPTRRWAALLAAALLLVFTAAIAINLLRGRTDIDCGCFGGGSSEP-LGWFLVVRNLLLAALALA 133 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCc-cCHHHHHHHHHHHHHHHH
Confidence 885 2 356677788776665433221 100 011111 224678999999866543
No 7
>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.00016 Score=61.32 Aligned_cols=67 Identities=18% Similarity=0.069 Sum_probs=51.2
Q ss_pred HHHHHHH---HHHHHhh--HHHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031695 71 ALKGIGG---LLFIFGS--SFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQVSTYELSLSFSCN 137 (155)
Q Consensus 71 ~~e~~Gg---ll~i~G~--~~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~KNlal~GgLL~~~~ 137 (155)
+.-++|- +++.+|. +..|.+|.+-+........+||+.+.+.+-+--.-.+|+++++.+||+|++.|
T Consensus 184 l~~Iv~~~l~i~v~lGfktKl~a~llvl~L~~~ni~~N~~w~ip~~~~~~df~rydFfqtlSvIGGlLllv~ 255 (270)
T KOG3998|consen 184 LLSIVSFGLMIFVWLGFKTKLFAILLVLWLFGYNILLNAWWTIPSDNPLRDFSRYDFFQTLSVIGGLLLLVN 255 (270)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhchhhhccCCchHHHHHHHHHHHHHHHhccEEEEEE
Confidence 3345555 3455786 79999999999999999999999766555432235789999999999987644
No 8
>KOG3998 consensus Putative cargo transport protein ERV29 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.00075 Score=57.29 Aligned_cols=109 Identities=12% Similarity=0.091 Sum_probs=79.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 031695 2 AFVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFI 81 (155)
Q Consensus 2 ~~l~~lGRvLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i 81 (155)
|++..++|.++.+-|.--|+.-..+++.-..+. +...| .+..-..+........|++|+.+++
T Consensus 23 ~ylptlaRl~ivSTf~eD~lri~~qw~~q~~~~---------------~~~~~--~~~~~a~~~~~v~~l~~l~g~~liv 85 (270)
T KOG3998|consen 23 PYLPTLARLLIVSTFFEDGLRIVFQWPLQVSYL---------------NINWG--CGYFFAGVFTIVMVLGQLVGSVLIV 85 (270)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhhccHHHHHHH---------------HHhcC--CCcHHHHHHHHHHHHHHHhcceEee
Confidence 678899999999999999999999998533333 33334 4544455666777778888888888
Q ss_pred HhhH--HHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031695 82 FGSS--FGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQVSTYELSLSFSCNF 138 (155)
Q Consensus 82 ~G~~--~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~KNlal~GgLL~~~~~ 138 (155)
...+ .|..+|..=.+.=|...+-+|+ ..-+++|.+++||++++++=
T Consensus 86 ~rkkv~~a~glL~~~~~lq~i~y~i~t~-----------~~~~~rN~sviggllLllae 133 (270)
T KOG3998|consen 86 LRKKVAYATGLLLFIVVLQTIAYSILTD-----------LVFLLRNISVIGGLLLLLAE 133 (270)
T ss_pred eehhhHHHhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHH
Confidence 7764 3555555545555555666664 56799999999999998763
No 9
>PF13564 DoxX_2: DoxX-like family
Probab=96.94 E-value=0.01 Score=42.54 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHh----
Q 031695 8 GRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFG---- 83 (155)
Q Consensus 8 GRvLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i~G---- 83 (155)
-+++++..|+.+|+.|+.+.+. . .+..+ +.| .|+ ........+|++|+++++.+
T Consensus 2 l~~lla~~f~~~g~~kl~~~~~----~-----------~~~~~-~~g--~p~----~~~~~~G~~Ei~gai~Ll~~~~~~ 59 (103)
T PF13564_consen 2 LTILLALFFLFSGVMKLFGPPE----M-----------VEMFP-KLG--YPK----WFVYVVGVLEILGAIGLLIPLFWN 59 (103)
T ss_pred HHHHHHHHHHHHHHHHhCCCHH----H-----------HHHhH-hcC--CCH----HHHHHHHHHHHHHHHHHHHccccc
Confidence 3688999999999999987652 1 11212 345 454 24566778999999999988
Q ss_pred -h--HHHHHHHHHHHHHHHhhhc
Q 031695 84 -S--SFGAYLLLLHQALATPILY 103 (155)
Q Consensus 84 -~--~~gA~lLa~F~~~~T~i~H 103 (155)
+ .+++..+....+.+.. .|
T Consensus 60 ~~~~~~aa~~l~~~m~~A~~-~h 81 (103)
T PF13564_consen 60 PRLSPLAALGLLVLMLGAIY-TH 81 (103)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HH
Confidence 2 3566666555555444 55
No 10
>COG4270 Predicted membrane protein [Function unknown]
Probab=95.72 E-value=0.043 Score=41.94 Aligned_cols=73 Identities=21% Similarity=0.266 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh--
Q 031695 7 VGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGS-- 84 (155)
Q Consensus 7 lGRvLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i~G~-- 84 (155)
+-|.+++.-|+.-|+.|+...+.-. ..+.| -+|.|. ..+..+...|++||+.++..+
T Consensus 8 L~~~~la~~f~~iGi~HF~r~eqf~----~IVPp-------------~vP~p~----tav~VSG~fEilgglaLlip~~s 66 (131)
T COG4270 8 LLLAFLAAAFLLIGIGHFTRPEQFR----RIVPP-------------CVPLPK----TAVLVSGIFEILGGLALLIPAPS 66 (131)
T ss_pred HHHHHHHHHHHHHhhhhccchhhhc----ccCCC-------------CCCcch----hHHHHHHHHHHHhhhhhhcCCcH
Confidence 3456789999999999998877422 22222 255663 345667789999999988774
Q ss_pred HHHHHHHHHHHHHHHh
Q 031695 85 SFGAYLLLLHQALATP 100 (155)
Q Consensus 85 ~~gA~lLa~F~~~~T~ 100 (155)
+..+.-|..+++.++|
T Consensus 67 ~~aa~gl~~l~laVfP 82 (131)
T COG4270 67 QAAAWGLIILLLAVFP 82 (131)
T ss_pred HHHHhhHHHHHHHHcc
Confidence 4566666666666655
No 11
>PF15111 TMEM101: TMEM101 protein family
Probab=90.77 E-value=1.3 Score=37.59 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh-
Q 031695 6 FVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGS- 84 (155)
Q Consensus 6 ~lGRvLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i~G~- 84 (155)
-.||+.++...+.++++-...-|+.-++. + .+|=-++ .+..-.+.-+++|+++..|.
T Consensus 137 ~tgq~~lgiyli~~Ay~L~~S~Edr~A~l------------~------hipgge~----~l~~~~v~y~~~gl~flsgy~ 194 (251)
T PF15111_consen 137 STGQVFLGIYLICVAYSLQHSKEDRLAYL------------N------HIPGGEV----MLQLLVVLYVVLGLAFLSGYY 194 (251)
T ss_pred hhhHHHHHHHHHHHHHHHHcCHHHHHHHH------------h------hCCCCch----hHHHHHHHHHHHHHHHHcccc
Confidence 46899999999999888766555322222 1 2232332 12333345688999999996
Q ss_pred -HHHHHHHHHHHHHHHhhhc---ccCCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031695 85 -SFGAYLLLLHQALATPILY---DFYNYDADKKEFGQIFIKFTQVSTYELSLSFS 135 (155)
Q Consensus 85 -~~gA~lLa~F~~~~T~i~H---dFWn~~~~~~~~~~~~~~F~KNlal~GgLL~~ 135 (155)
+..+-.|++-+.+++...- .||.... .-|+-.|++.--+|+.+.|+++..
T Consensus 195 ~~~~~~~lav~l~~~~l~iDgnv~yW~~s~-~vEfW~Qm~li~~nv~I~ga~~il 248 (251)
T PF15111_consen 195 VKLAAQILAVLLPFVILLIDGNVKYWHKSR-RVEFWNQMKLIGRNVGIFGALLIL 248 (251)
T ss_pred HHHHHHHHHHHHHHhheEEecchhhhhcch-hhhHHHHHHHHHhcchHhhheeee
Confidence 5666667766666666543 3886543 567777799999999999998753
No 12
>PF13781 DoxX_3: DoxX-like family
Probab=90.08 E-value=2.2 Score=31.10 Aligned_cols=71 Identities=18% Similarity=0.079 Sum_probs=52.3
Q ss_pred hhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhh--H----HHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHH
Q 031695 50 LSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGS--S----FGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFT 123 (155)
Q Consensus 50 ~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i~G~--~----~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~ 123 (155)
-++.|.+-+. .+..+.++.+.|++=|+++...+ | .-..++..+++.+|..-=++|.. | ++-..
T Consensus 24 L~~~G~~~~~--a~~~~~~~g~~di~lGl~~l~~~~~r~~~~l~i~~~l~y~~~~~~~~P~lw~~----P-----f~Pl~ 92 (102)
T PF13781_consen 24 LAAVGLPGAL--APLLLYAGGLLDIALGLLLLSRRRRRWLLLLQIALLLGYTLAIAILLPELWLH----P-----FNPLV 92 (102)
T ss_pred HHHhCCChhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHh----h-----hhhHH
Confidence 3345655443 45677888889999999888764 2 35567788899999888888862 2 68899
Q ss_pred HHHHHHHH
Q 031695 124 QVSTYELS 131 (155)
Q Consensus 124 KNlal~Gg 131 (155)
||+.++.-
T Consensus 93 knlp~l~l 100 (102)
T PF13781_consen 93 KNLPMLAL 100 (102)
T ss_pred HHHHHHHH
Confidence 99998763
No 13
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=86.93 E-value=15 Score=29.77 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcc-chhhccCchhhhhhhhh-----hhhcCCCCChh-------hHHHHHHHHHH
Q 031695 5 SFVGRVLFASIFLLSAWQEFNEFGVDGG-PAAKSLEPKFHIFSKHV-----LSHTGVQVPDV-------EIKYLVAAAIA 71 (155)
Q Consensus 5 ~~lGRvLfa~lFl~SG~~kl~~~~~~~g-~~~~~l~P~~~~~~~~~-----~~~~Glp~P~~-------~~~~~~~~ai~ 71 (155)
..+.|+-...+|++-|..|+.++|+++= |..+. -|-++-+-++. ....|- .|+= .....-..-..
T Consensus 15 ~~i~r~~i~iVl~WiG~lKf~~yEA~gI~PlVan-SPlmswlY~~~~~~~~~~~~~~-~~~n~~wh~~n~~~~~S~~lG~ 92 (175)
T PF04224_consen 15 YNILRLGIVIVLLWIGGLKFTPYEADGIVPLVAN-SPLMSWLYDVFSYKYHQNKEGE-VPENRAWHKANGTYGFSYLLGV 92 (175)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHhhhhHHHhC-CcHHHHHhhccchhhhhccccc-cHHHHHHHHhcCchhhHHHHHH
Confidence 3578999999999999999999996552 22100 12221111111 001111 1100 01122344456
Q ss_pred HHHHHHHHHHHhh---H--HHHHHHHHHHHHHHhhhc----ccCCCCh------hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 031695 72 LKGIGGLLFIFGS---S--FGAYLLLLHQALATPILY----DFYNYDA------DKKEFGQIFIKFTQVSTYELSLSFSC 136 (155)
Q Consensus 72 ~e~~Ggll~i~G~---~--~gA~lLa~F~~~~T~i~H----dFWn~~~------~~~~~~~~~~~F~KNlal~GgLL~~~ 136 (155)
+|++-|+++++|. + .-..+++..+-++|..|= +-|..+. .... +--+|.+.+.|+-+..+
T Consensus 93 vEi~~~ill~~g~~~p~~g~~G~ll~~~~flvTLSFL~TTP~vw~~~~GGFP~Lsg~g-----~fllKDivlLa~~l~~~ 167 (175)
T PF04224_consen 93 VEIIIGILLLLGIWSPKLGILGGLLAFGTFLVTLSFLFTTPGVWVPSLGGFPYLSGAG-----RFLLKDIVLLAASLVLL 167 (175)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeccCCCCceecCCC-----chHHHHHHHHHHHHHHH
Confidence 7999999999984 2 223344555555555543 2343211 0111 22589999999988765
Q ss_pred H
Q 031695 137 N 137 (155)
Q Consensus 137 ~ 137 (155)
.
T Consensus 168 ~ 168 (175)
T PF04224_consen 168 S 168 (175)
T ss_pred H
Confidence 4
No 14
>PF04173 DoxD: TQO small subunit DoxD; InterPro: IPR007301 P97207 from SWISSPROT is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20.4 kDa []. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon A. ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=63.08 E-value=78 Score=25.40 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHH-hhccc---cC-ccchhhccC---chhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHH
Q 031695 6 FVGRVLFASIFLLSAWQE-FNEFG---VD-GGPAAKSLE---PKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGG 77 (155)
Q Consensus 6 ~lGRvLfa~lFl~SG~~k-l~~~~---~~-~g~~~~~l~---P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Gg 77 (155)
+.-|+..+..++..|++| +.+.+ .. .+++..++. |+=..++..++-. ++.|...... .+.-..+|++-|
T Consensus 3 l~lR~~~G~~~~~ag~rr~il~p~kL~p~~~~~vg~k~~~~lp~a~~~~~~i~~~--v~~~~~l~~~-lv~ft~vE~~~G 79 (167)
T PF04173_consen 3 LALRLVVGWIWFSAGWRRKILNPAKLDPNSTSYVGGKFNQFLPHALPIKPFIEFV--VLPPDLLFGF-LVVFTIVEIIFG 79 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcCCCCCCcccHHHHHHHHhCcCccccHHHHHHH--hcCHHHHHHH-HHHHHHHHHHHH
Confidence 457999999999999985 55552 22 234433211 1112223322211 2223322222 222234599999
Q ss_pred HHHHHhh--HHHHHHHHHHHHHHHhhhcccCC
Q 031695 78 LLFIFGS--SFGAYLLLLHQALATPILYDFYN 107 (155)
Q Consensus 78 ll~i~G~--~~gA~lLa~F~~~~T~i~HdFWn 107 (155)
+++++|. |+.|..-+...+... .=..|.
T Consensus 80 l~LilGL~TRLaa~~~~~l~~~i~--L~a~W~ 109 (167)
T PF04173_consen 80 LLLILGLFTRLAALVALGLALGIL--LSAGWL 109 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhcccC
Confidence 9999995 777754333333333 334785
No 15
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=40.83 E-value=1.3e+02 Score=23.40 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHHHHHH
Q 031695 86 FGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQVST 127 (155)
Q Consensus 86 ~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~KNla 127 (155)
++-.+++..++....-..||.+.+....| .+++.+|.|++|
T Consensus 49 L~II~~L~ll~l~giq~~~y~~~~~~~~q-~~~~~~fi~~vA 89 (149)
T PF11694_consen 49 LSIIALLLLLLLIGIQYSDYQQNQNQHSQ-SSQMVHFIESVA 89 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhH-HHHHHHHHHHHH
Confidence 33333444444444556677776554455 456999999987
No 16
>PF14927 Neurensin: Neurensin
Probab=40.50 E-value=1.4e+02 Score=23.23 Aligned_cols=70 Identities=21% Similarity=0.216 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 031695 10 VLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFGAY 89 (155)
Q Consensus 10 vLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i~G~~~gA~ 89 (155)
+..+.+|++.|+--+ +.||+ ++||.+.+.+ .-.++..+-+..-.-..--.+.+.|..++-+|.-+-|.
T Consensus 48 ~i~g~l~Ll~Gi~~l-----~vgY~---vP~~~e~~~~----~~~~~~vD~~a~~~n~~Ld~c~laG~~L~~lGg~lla~ 115 (140)
T PF14927_consen 48 FISGLLLLLLGIVAL-----TVGYL---VPPKIEVFGE----AGEFVVVDSQAARFNNALDTCKLAGLILLCLGGILLAV 115 (140)
T ss_pred HHHHHHHHHHHHHHH-----Hhhcc---cCCcceeccc----cccccccchHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888775 23344 4566554421 12233333322223344456677788777776544443
Q ss_pred HH
Q 031695 90 LL 91 (155)
Q Consensus 90 lL 91 (155)
.|
T Consensus 116 ~L 117 (140)
T PF14927_consen 116 CL 117 (140)
T ss_pred HH
Confidence 33
No 17
>PRK02237 hypothetical protein; Provisional
Probab=36.01 E-value=1.5e+02 Score=22.32 Aligned_cols=41 Identities=27% Similarity=-0.028 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHhhhcccCC
Q 031695 65 LVAAAIALKGIGGLLFIFGS---------SFGAYLLLLHQALATPILYDFYN 107 (155)
Q Consensus 65 ~~~~ai~~e~~Ggll~i~G~---------~~gA~lLa~F~~~~T~i~HdFWn 107 (155)
+-..+.+.|+.|+=++-... -.|+..|++|-.+.| +|++.+
T Consensus 8 lF~laalaEI~Gcyl~w~wlR~~ks~~~~~pg~~~L~lfg~llT--l~p~~~ 57 (109)
T PRK02237 8 LFVLAALAEIGGCYLPWLWLREGKSAWWLLPGALSLALFGWLLT--LQPDAA 57 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHh--cCCchh
Confidence 34666689999998766542 248999999977777 888743
No 18
>COG3059 Predicted membrane protein [Function unknown]
Probab=35.77 E-value=2.1e+02 Score=23.19 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcc-chhhccCchhhhhhh-----hhhhhcCCCCChhhH-------HHHHHHHHHH
Q 031695 6 FVGRVLFASIFLLSAWQEFNEFGVDGG-PAAKSLEPKFHIFSK-----HVLSHTGVQVPDVEI-------KYLVAAAIAL 72 (155)
Q Consensus 6 ~lGRvLfa~lFl~SG~~kl~~~~~~~g-~~~~~l~P~~~~~~~-----~~~~~~Glp~P~~~~-------~~~~~~ai~~ 72 (155)
.+.|+-...+|++-|.-|+..+++++- |.. .=.|-++.+-+ |..+..|-.-|+-.. ...--+-.++
T Consensus 18 ~lirlsI~ivfiWiG~lKf~pyEAd~I~PfV-aNSP~mSf~Yeh~~~~q~m~~e~~~~pe~~~w~~~n~tY~~S~~lGi~ 96 (182)
T COG3059 18 TLIRLSIFIVFIWIGGLKFVPYEADGIAPFV-ANSPLMSFMYEHPEDEQYMTHEGEYNPENREWHSENNTYAVSNLLGIT 96 (182)
T ss_pred eehHHHHHHHHHHHhcceeeechhhhccHHh-hCCcHHHHHHhCcchhhhhhhhhccChhhHHHhhccchhhHHHHhhHH
Confidence 368999999999999999999997653 222 11244433322 333334444454110 0112334567
Q ss_pred HHHHHHHHHHhh---H---HHHHHHHHHHHHHHhhh------------cccCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 031695 73 KGIGGLLFIFGS---S---FGAYLLLLHQALATPIL------------YDFYNYDADKKEFGQIFIKFTQVSTYELSLSF 134 (155)
Q Consensus 73 e~~Ggll~i~G~---~---~gA~lLa~F~~~~T~i~------------HdFWn~~~~~~~~~~~~~~F~KNlal~GgLL~ 134 (155)
|.+-|++.+.|. + .|.. |..=+-.+|..| |.|.=..+ +. .--+|.+.+++|.++
T Consensus 97 e~ivgilvL~g~~~~~~Gl~GGl-l~~~~~ivTLSFLiTTPe~wv~~~~gfp~lsg--ag-----rlvlKDilmlAgal~ 168 (182)
T COG3059 97 EVIVGILVLIGLRNPKAGLLGGL-LVFGTPIVTLSFLITTPEAWVNSLYGFPYLSG--AG-----RLVLKDILMLAGALM 168 (182)
T ss_pred HHHHHHHHHhccccchHHHhhhh-HHHHHHHHHHHhhhcChhhccccccCceeEcc--cc-----hhhHHHHHHHHHHHH
Confidence 888888888884 2 2332 222222223221 22221222 11 125789999999888
Q ss_pred HHHH
Q 031695 135 SCNF 138 (155)
Q Consensus 135 ~~~~ 138 (155)
+.+.
T Consensus 169 v~~~ 172 (182)
T COG3059 169 VAAD 172 (182)
T ss_pred HHHh
Confidence 7664
No 19
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=34.42 E-value=3.3e+02 Score=24.14 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHH---Hhh--HHHHHHHHHHHHHHHhhhcc------cCCCC--hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 031695 69 AIALKGIGGLLFI---FGS--SFGAYLLLLHQALATPILYD------FYNYD--ADKKEFGQIFIKFTQVSTYELSLSFS 135 (155)
Q Consensus 69 ai~~e~~Ggll~i---~G~--~~gA~lLa~F~~~~T~i~Hd------FWn~~--~~~~~~~~~~~~F~KNlal~GgLL~~ 135 (155)
-....++.|++++ .|. ++...+..+...+.+...|. -+... .+-.|..+ ..|=|..+.+-+++.+
T Consensus 12 l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~--~~fGk~~G~ii~~lY~ 89 (397)
T TIGR00814 12 LYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVE--EHFGKNWGILITLLYF 89 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH--HHcCHHHHHHHHHHHH
Confidence 3345566666665 222 55666666655666666665 33321 22334433 6788889999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 031695 136 CNFYTMVFIYLFRIVN 151 (155)
Q Consensus 136 ~~~~~~~~~~~~~~~~ 151 (155)
+.+|..+..|.-++.|
T Consensus 90 ~~~~~i~~aY~~~~~~ 105 (397)
T TIGR00814 90 FAIYPILLIYSVAITN 105 (397)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877665
No 20
>PRK10692 hypothetical protein; Provisional
Probab=32.41 E-value=2e+02 Score=20.99 Aligned_cols=53 Identities=19% Similarity=0.348 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 031695 3 FVSFVGRVLFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIKYLVAAAIALKGIGGLLFIF 82 (155)
Q Consensus 3 ~l~~lGRvLfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~~~~~~ai~~e~~Ggll~i~ 82 (155)
.+.-+|=++...-.-+|-++++.+++ .|+ .++-+++.--.+|+++|+.
T Consensus 12 ~lMglGmv~Mv~gigysi~~~i~~L~----------------------------Lp~----~~~~gal~~IFiGAllWL~ 59 (92)
T PRK10692 12 VLMGLGLVVMVVGVGYSILNQLPQLN----------------------------LPQ----FFAHGALLSIFVGALLWLA 59 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC----------------------------chH----HHHhhHHHHHHHHHHHHHh
Q ss_pred hhHHH
Q 031695 83 GSSFG 87 (155)
Q Consensus 83 G~~~g 87 (155)
|.|+|
T Consensus 60 GArig 64 (92)
T PRK10692 60 GARVG 64 (92)
T ss_pred ccccc
No 21
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=31.44 E-value=65 Score=23.36 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=22.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 031695 55 VQVPDVEIKYLVAAAIALKGIGGLLFIFGSSFG 87 (155)
Q Consensus 55 lp~P~~~~~~~~~~ai~~e~~Ggll~i~G~~~g 87 (155)
+.+|+. ++-+++.--.+|+++|+.|.|+|
T Consensus 36 L~Lp~~----~~~gal~~IFiGAllWL~GARig 64 (89)
T PF10762_consen 36 LGLPQF----LAHGALFSIFIGALLWLVGARIG 64 (89)
T ss_pred CCCcHH----HHhhHHHHHHHHHHHHHhccccc
Confidence 557774 45677777789999999997764
No 22
>PF09933 DUF2165: Predicted small integral membrane protein (DUF2165); InterPro: IPR018681 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.06 E-value=1.4e+02 Score=23.61 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhccccCccchhhccCchhhhhhhhhhhhcCCCCChhhHH-HHHHHHHHHHHHHHHHHHHhh
Q 031695 11 LFASIFLLSAWQEFNEFGVDGGPAAKSLEPKFHIFSKHVLSHTGVQVPDVEIK-YLVAAAIALKGIGGLLFIFGS 84 (155)
Q Consensus 11 Lfa~lFl~SG~~kl~~~~~~~g~~~~~l~P~~~~~~~~~~~~~Glp~P~~~~~-~~~~~ai~~e~~Ggll~i~G~ 84 (155)
.++....+.+++++.||+.+-++..+.+.=. +.+.. +..+...++.+.+. .....-|+.|.+.+++...|.
T Consensus 13 ~~Al~~~Lva~~NitDy~sN~~fV~hVlsMd-t~f~~--~~l~~RAI~sp~l~~~ay~~II~~E~~~a~l~~~G~ 84 (160)
T PF09933_consen 13 AIALFATLVAFNNITDYGSNFQFVRHVLSMD-TTFPD--PPLMWRAITSPWLHHAAYILIIAWEALAALLCWIGA 84 (160)
T ss_pred HHHHHHHHHHHhcccCcHHHHHHHHHHHHHH-HhcCC--CCcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999997665433221100 00000 11222333332222 334566788999888877663
No 23
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=25.55 E-value=2.7e+02 Score=20.37 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccCCCChhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 031695 64 YLVAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYNYDADKKEFGQIFIKFTQVSTYELSLS-FSCNFYT 140 (155)
Q Consensus 64 ~~~~~ai~~e~~Ggll~i~G~~~gA~lLa~F~~~~T~i~HdFWn~~~~~~~~~~~~~~F~KNlal~GgLL-~~~~~~~ 140 (155)
.++..++.+|++=|+++++.++ +|.++++++ + --+-++|.+.++.++ ...|..-
T Consensus 46 ~Li~iSlvLQv~vgilli~~~~--------------------~n~~~~~~~--~-~~~~lnn~~~~~v~ii~vvNv~I 100 (104)
T PF04923_consen 46 TLISISLVLQVVVGILLIFISR--------------------YNINKPEKQ--R-RANRLNNWATILVFIITVVNVFI 100 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--------------------hccccHHHH--H-HHHHHHHHHHHHHHHHHhhhhhh
Confidence 3467777788877777666443 344333322 1 367889999988874 4445443
No 24
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.09 E-value=4.4e+02 Score=21.82 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 031695 85 SFGAYLLLLHQALATPIL 102 (155)
Q Consensus 85 ~~gA~lLa~F~~~~T~i~ 102 (155)
.+-+.++.+|+.+|+|+.
T Consensus 67 slklLLiIvFllLTaPVa 84 (197)
T PRK12585 67 NARVLLAVLFIFLTTPVA 84 (197)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567778888888873
No 25
>KOG4580 consensus Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=22.28 E-value=2.7e+02 Score=21.05 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcccCC
Q 031695 66 VAAAIALKGIGGLLFIFGSSFGAYLLLLHQALATPILYDFYN 107 (155)
Q Consensus 66 ~~~ai~~e~~Ggll~i~G~~~gA~lLa~F~~~~T~i~HdFWn 107 (155)
+..++.+..+|-.++=+|-++|-..-.+|++++...+ ||+
T Consensus 24 L~~tvlLg~l~~~l~n~~~~~g~~~a~v~t~vaif~~--~ya 63 (112)
T KOG4580|consen 24 LSVTVLLGGLGFALYNSGDRLGILSAYVYTLVAIFCG--FYA 63 (112)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 5566666666666666767888888899999998877 775
Done!