Query 031695
Match_columns 155
No_of_seqs 102 out of 216
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:58:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ymm_C MBP peptide, HLA class 20.7 27 0.00093 19.0 0.5 8 119-126 4-11 (26)
2 2lug_A Myelin basic protein; i 16.3 60 0.002 18.7 1.3 8 119-126 12-19 (36)
3 2ks1_B Epidermal growth factor 15.2 2E+02 0.0069 17.1 3.6 24 126-149 15-38 (44)
4 2l2t_A Receptor tyrosine-prote 12.4 2.6E+02 0.0088 16.7 3.6 23 126-148 14-36 (44)
5 2k9p_A Pheromone alpha factor 9.6 2.5E+02 0.0087 18.7 3.0 18 79-96 22-39 (80)
6 1lgh_A LH II, B800/850, light 8.6 3.2E+02 0.011 17.2 3.1 23 81-103 12-34 (56)
7 2l8s_A Integrin alpha-1; trans 7.8 3.7E+02 0.013 16.7 3.1 19 125-143 13-35 (54)
8 2knc_A Integrin alpha-IIB; tra 7.3 4E+02 0.014 16.5 3.1 19 125-143 16-38 (54)
9 3p8c_E Probable protein brick1 5.3 2.1E+02 0.007 19.2 0.9 22 103-128 13-34 (75)
10 3c5t_B Exendin-4, exenatide; l 4.7 4.6E+02 0.016 14.6 1.9 12 114-125 9-20 (31)
No 1
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=20.70 E-value=27 Score=18.98 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=6.7
Q ss_pred HHHHHHHH
Q 031695 119 FIKFTQVS 126 (155)
Q Consensus 119 ~~~F~KNl 126 (155)
+.||+||+
T Consensus 4 vVHFFKNi 11 (26)
T 1ymm_C 4 VVHFFKNI 11 (26)
T ss_pred hhhhhhhc
Confidence 57899996
No 2
>2lug_A Myelin basic protein; intrinsically disordered proteins, dodecylphosphocholine MIC myelin membrane, lipid binding protein; NMR {Mus musculus}
Probab=16.28 E-value=60 Score=18.74 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=6.9
Q ss_pred HHHHHHHH
Q 031695 119 FIKFTQVS 126 (155)
Q Consensus 119 ~~~F~KNl 126 (155)
..||+||+
T Consensus 12 vvhffkni 19 (36)
T 2lug_A 12 VVHFFKNI 19 (36)
T ss_dssp HHHHHHHH
T ss_pred hhHhhhhc
Confidence 58999997
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.18 E-value=2e+02 Score=17.11 Aligned_cols=24 Identities=8% Similarity=-0.082 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 031695 126 STYELSLSFSCNFYTMVFIYLFRI 149 (155)
Q Consensus 126 lal~GgLL~~~~~~~~~~~~~~~~ 149 (155)
.+.+||++.+...--.+++|+-|-
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eehhHHHHHHHHHHHHHHHHhhhh
Confidence 467899998888877777777653
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=12.40 E-value=2.6e+02 Score=16.71 Aligned_cols=23 Identities=13% Similarity=-0.060 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 031695 126 STYELSLSFSCNFYTMVFIYLFR 148 (155)
Q Consensus 126 lal~GgLL~~~~~~~~~~~~~~~ 148 (155)
.+.+||++.+...--.+++|+-|
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EeehHHHHHHHHHHHHHHHHhhh
Confidence 56788898888887777777765
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=9.55 E-value=2.5e+02 Score=18.70 Aligned_cols=18 Identities=33% Similarity=0.388 Sum_probs=12.8
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 031695 79 LFIFGSSFGAYLLLLHQA 96 (155)
Q Consensus 79 l~i~G~~~gA~lLa~F~~ 96 (155)
.+.+|.++||..+++..+
T Consensus 22 ~I~~G~~iGAs~llliil 39 (80)
T 2k9p_A 22 AILFGVRSGAAALTLIVV 39 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457888999877666433
No 6
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=8.58 E-value=3.2e+02 Score=17.16 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=9.8
Q ss_pred HHhhHHHHHHHHHHHHHHHhhhc
Q 031695 81 IFGSSFGAYLLLLHQALATPILY 103 (155)
Q Consensus 81 i~G~~~gA~lLa~F~~~~T~i~H 103 (155)
++..|.|-.++..|+.+.....|
T Consensus 12 vvdP~~~L~~l~~~v~vlAllIH 34 (56)
T 1lgh_A 12 VINPSTWLPVIWIVATVVAIAVH 34 (56)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCceeHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.76 E-value=3.7e+02 Score=16.74 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHH----HHHHHHH
Q 031695 125 VSTYELSLSFSC----NFYTMVF 143 (155)
Q Consensus 125 Nlal~GgLL~~~----~~~~~~~ 143 (155)
-+|.+||++++. .+||.-|
T Consensus 13 i~svl~GLLLL~Lii~~LwK~GF 35 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWKIGF 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Confidence 367788877654 5555544
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.33 E-value=4e+02 Score=16.52 Aligned_cols=19 Identities=11% Similarity=0.071 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHH----HHHHHHH
Q 031695 125 VSTYELSLSFSC----NFYTMVF 143 (155)
Q Consensus 125 Nlal~GgLL~~~----~~~~~~~ 143 (155)
-++.+||++++. .+||.-|
T Consensus 16 i~svl~GLllL~li~~~LwK~GF 38 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWKVGF 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Confidence 467788887654 4555544
No 9
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=5.34 E-value=2.1e+02 Score=19.15 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=16.8
Q ss_pred cccCCCChhhhHHHHHHHHHHHHHHH
Q 031695 103 YDFYNYDADKKEFGQIFIKFTQVSTY 128 (155)
Q Consensus 103 HdFWn~~~~~~~~~~~~~~F~KNlal 128 (155)
+..|+ .+|+.+.+++|+++..-
T Consensus 13 q~DW~----nRe~ie~in~~I~~~v~ 34 (75)
T 3p8c_E 13 HQDWA----NREYIEIITSSIKKIAD 34 (75)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHhHH----HHHHHHHHHHHHHHHHH
Confidence 45663 67888889999998764
No 10
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=4.68 E-value=4.6e+02 Score=14.57 Aligned_cols=12 Identities=25% Similarity=0.448 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHH
Q 031695 114 EFGQIFIKFTQV 125 (155)
Q Consensus 114 ~~~~~~~~F~KN 125 (155)
+..+++.+.++|
T Consensus 9 ~aakdFv~WL~n 20 (31)
T 3c5t_B 9 EAVRLFIEWLKN 20 (31)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 445677777776
Done!