BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031696
(155 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40383|XRN1_SCHPO 5'-3' exoribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=exo2 PE=1 SV=1
Length = 1328
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 46 GCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKR--HGVMDV 103
G W LF YR +S G+ H P I + KG D+ I TP R +M V
Sbjct: 525 GLQWVLFYYYRGCQSWGWYYNYHFAPKISDVLKGLDVKIDFK----MGTPFRPFEQLMAV 580
Query: 104 EPKEESSLV-ALFYNIQINEVRPVFDVYLPN 133
P +LV F ++ +N P+ D Y N
Sbjct: 581 LPARSQALVPPCFRDLMVNSESPIIDFYPEN 611
>sp|Q8C2A2|SEN54_MOUSE tRNA-splicing endonuclease subunit Sen54 OS=Mus musculus GN=Tsen54
PE=2 SV=2
Length = 525
Score = 36.6 bits (83), Expect = 0.059, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 14 FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
+L E G++ L DL L ++E Y+ + E + S+ ++V+ HLK LGY+V R + +
Sbjct: 119 YLLECGSIQLF-YQDLPLSIQEAYQLLLTEDT-LSFLQYQVFSHLKRLGYVVRRFQLSSV 176
Query: 74 VKIPKGRDINI 84
V P R +N+
Sbjct: 177 VS-PYERQLNL 186
>sp|Q7Z6J9|SEN54_HUMAN tRNA-splicing endonuclease subunit Sen54 OS=Homo sapiens GN=TSEN54
PE=1 SV=3
Length = 526
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 14 FLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWI 73
+L E G+++L + DL L ++E Y+ + + + ++ ++V+ HLK LGY+V R P
Sbjct: 119 YLLECGSIHLF-HQDLPLSIQEAYQLLLTDHT-VTFLQYQVFSHLKRLGYVVRRFQ-PSS 175
Query: 74 VKIPKGRDINITS 86
V P R +N+ +
Sbjct: 176 VLSPYERQLNLDA 188
>sp|P22147|XRN1_YEAST 5'-3' exoribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=XRN1 PE=1 SV=1
Length = 1528
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 46 GCSWELFEVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPVSLQVTPKRHGVMDVEP 105
G W L+ YR S + H P I + KG D +I D +S TP + +M V P
Sbjct: 540 GLQWVLYYYYRGCPSWSWYYPHHYAPRISDLAKGLDQDIEFD-LSKPFTPFQQ-LMAVLP 597
Query: 106 KEESSLV-ALFYNIQINEVRPVFDVY 130
+ +L+ F + +E P+ D Y
Sbjct: 598 ERSKNLIPPAFRPLMYDEQSPIHDFY 623
>sp|A1R728|PDXT_ARTAT Glutamine amidotransferase subunit PdxT OS=Arthrobacter aurescens
(strain TC1) GN=pdxT PE=3 SV=2
Length = 233
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 46 GCSWELFEVYRHLKSLGYIVGRHGV----------PWIVKIPKGRDINITSDPVSLQVTP 95
G E FE K L + G GV PW+ ++ G ++ DP T
Sbjct: 131 GRQRESFETDLDFKGLDFSAGESGVDPVHAVFIRGPWVERVGSGVEVLAQVDPDHASHTA 190
Query: 96 KRHGVMDVEPKEESSLVALFYNIQINEVRPVFDVYL 131
HGV + L+A ++ ++ + V ++++
Sbjct: 191 TLHGVARIVAVRSGQLLATSFHPEVTGEKRVHELFI 226
>sp|Q9CIU9|F16PC_LACLA Fructose-1,6-bisphosphatase class 3 OS=Lactococcus lactis subsp.
lactis (strain IL1403) GN=fbp PE=3 SV=1
Length = 640
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 3 RPTAQLRRLCRFLAEIGALYLLDNNDL----CLPLKE 35
R + +L+R FL E GA+YL N +L CLPL E
Sbjct: 382 RSSDKLKRHVEFLQEKGAMYLSYNGNLLIHGCLPLHE 418
>sp|A5I3F5|PIP_CLOBH Proline iminopeptidase OS=Clostridium botulinum (strain Hall / ATCC
3502 / NCTC 13319 / Type A) GN=pip PE=3 SV=1
Length = 293
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 28 DLCLPL--KEIYEKIANEKSGCSWELFEVYRHL 58
DLC PL K +Y+KI N + WELFE RH+
Sbjct: 244 DLCSPLVAKTMYDKIPNSE----WELFEFSRHM 272
>sp|B1WB65|CING_XENTR Cingulin OS=Xenopus tropicalis GN=cgn PE=2 SV=1
Length = 1251
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 3 RPTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEV 54
RP A ++RL + L ++ + C LK++Y+K NE + S EL EV
Sbjct: 357 RPKAGMQRL--------EIQLEESKEECSRLKDLYDKKKNELNAVSQELMEV 400
>sp|Q184M8|PIP_CLOD6 Proline iminopeptidase OS=Clostridium difficile (strain 630) GN=pip
PE=3 SV=1
Length = 293
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 28 DLCLP--LKEIYEKIANEKSGCSWELFEVYRHL 58
DLC P K +Y++I N K WELFE RH+
Sbjct: 244 DLCSPYIAKTMYDRIPNSK----WELFEYSRHM 272
>sp|Q9PTD7|CING_XENLA Cingulin OS=Xenopus laevis GN=cgn PE=1 SV=2
Length = 1360
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 30 CLPLKEIYEKIANEKSGCSWELFEV 54
C LKE+YEK NE S S EL EV
Sbjct: 487 CSRLKELYEKKKNELSAMSQELMEV 511
>sp|Q5N1D9|SYK_SYNP6 Lysine--tRNA ligase OS=Synechococcus sp. (strain ATCC 27144 / PCC
6301 / SAUG 1402/1) GN=lysS PE=3 SV=1
Length = 504
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 53 EVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPV-----SLQVTP-KRHGVMDVEPK 106
E + HLK+L + GV V+ + +++I D SLQ P K HG+ DVE +
Sbjct: 99 EAFSHLKALTDVGDILGVKGSVRRTEKGELSIAVDQYAILTKSLQPLPDKWHGLTDVEKR 158
Query: 107 EESSLVALFYNIQINE 122
V L N ++ E
Sbjct: 159 YRQRYVDLIVNPEVRE 174
>sp|Q31KH4|SYK_SYNE7 Lysine--tRNA ligase OS=Synechococcus elongatus (strain PCC 7942)
GN=lysS PE=3 SV=1
Length = 504
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 53 EVYRHLKSLGYIVGRHGVPWIVKIPKGRDINITSDPV-----SLQVTP-KRHGVMDVEPK 106
E + HLK+L + GV V+ + +++I D SLQ P K HG+ DVE +
Sbjct: 99 EAFSHLKALTDVGDILGVKGSVRRTEKGELSIAVDQYAILTKSLQPLPDKWHGLTDVEKR 158
Query: 107 EESSLVALFYNIQINE 122
V L N ++ E
Sbjct: 159 YRQRYVDLIVNPEVRE 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,184,845
Number of Sequences: 539616
Number of extensions: 2476051
Number of successful extensions: 5185
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5182
Number of HSP's gapped (non-prelim): 18
length of query: 155
length of database: 191,569,459
effective HSP length: 107
effective length of query: 48
effective length of database: 133,830,547
effective search space: 6423866256
effective search space used: 6423866256
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)