Query 031696
Match_columns 155
No_of_seqs 130 out of 191
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4772 Predicted tRNA-splicin 99.9 4.6E-27 9.9E-32 202.3 3.0 143 5-153 110-286 (364)
2 PRK09297 tRNA-splicing endonuc 99.5 1.6E-14 3.6E-19 114.7 2.5 72 4-76 34-108 (169)
3 TIGR00324 endA tRNA intron end 99.5 3.6E-14 7.9E-19 113.0 3.2 71 5-76 36-109 (170)
4 COG1676 SEN2 tRNA splicing end 99.2 1.3E-11 2.8E-16 99.6 5.1 72 4-76 45-119 (181)
5 PRK09300 tRNA splicing endonuc 99.1 8.2E-11 1.8E-15 102.4 4.3 66 5-76 34-99 (330)
6 PRK09300 tRNA splicing endonuc 99.1 6.9E-11 1.5E-15 102.9 2.7 66 5-76 199-267 (330)
7 PF12928 tRNA_int_end_N2: tRNA 98.5 7.2E-08 1.6E-12 67.0 2.2 23 4-26 49-71 (72)
8 PF02778 tRNA_int_endo_N: tRNA 97.9 2E-05 4.2E-10 54.3 3.9 33 4-37 35-67 (67)
9 PRK09539 tRNA-splicing endonuc 97.4 5.6E-05 1.2E-09 58.1 0.6 31 45-75 31-64 (124)
10 PF01974 tRNA_int_endo: tRNA i 97.2 3.5E-05 7.5E-10 54.3 -1.5 29 48-76 1-32 (85)
11 KOG4685 tRNA splicing endonucl 97.0 0.00033 7.1E-09 59.7 2.2 69 6-76 114-186 (271)
12 KOG4133 tRNA splicing endonucl 91.1 0.041 9E-07 47.3 -1.2 28 49-76 194-224 (290)
13 KOG4772 Predicted tRNA-splicin 73.8 1.6 3.4E-05 38.9 1.1 28 121-148 231-262 (364)
14 PRK15047 N-hydroxyarylamine O- 58.8 3.1 6.8E-05 35.6 -0.0 46 21-66 41-88 (281)
15 PF00797 Acetyltransf_2: N-ace 47.8 1.7 3.6E-05 35.1 -3.3 41 27-67 27-69 (240)
16 PF03987 Autophagy_act_C: Auto 29.8 40 0.00087 22.1 1.8 22 21-42 15-36 (62)
17 PF13592 HTH_33: Winged helix- 29.7 13 0.00029 24.2 -0.6 41 28-69 2-42 (60)
18 COG2162 NhoA Arylamine N-acety 27.5 22 0.00047 30.9 0.2 49 20-68 41-91 (275)
19 TIGR03882 cyclo_dehyd_2 bacter 26.5 7.2 0.00016 31.4 -2.8 58 6-66 9-76 (193)
20 PF11625 DUF3253: Protein of u 20.5 71 0.0015 23.0 1.7 26 10-36 48-73 (83)
21 COG1772 Uncharacterized protei 20.5 2.1E+02 0.0044 23.3 4.4 15 11-25 67-81 (178)
22 PF05284 DUF736: Protein of un 20.2 91 0.002 23.0 2.3 19 131-151 30-48 (107)
No 1
>KOG4772 consensus Predicted tRNA-splicing endonuclease subunit [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=4.6e-27 Score=202.30 Aligned_cols=143 Identities=30% Similarity=0.478 Sum_probs=98.8
Q ss_pred cchhHHHHHHHHhhC-CEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecCCCceeec---CCCc
Q 031696 5 TAQLRRLCRFLAEIG-ALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKI---PKGR 80 (155)
Q Consensus 5 ~~~lpeEaLYL~ErG-~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g~~~~~~~---~~~~ 80 (155)
+||++||||||+||| ...+++.++.+||++++|+.+..++ -+|++|+||+||||+||||.||+.+-+++. +.+-
T Consensus 110 lyl~~eEalYL~ErG~l~~cg~e~~I~~sl~dLys~~~s~~--~s~enYlVyahLkrlGfiv~rhn~~~~~~~e~~~~~k 187 (364)
T KOG4772|consen 110 LYLFIEEALYLSERGELQSCGHEDDIVISLKDLYSEIASEK--YSMENYLVYAHLKRLGFIVKRHNVPAAVKTEFFPLKK 187 (364)
T ss_pred eEEeHHHHHHHHHhhhhhhhcCccchhhHHHHHHHHHhhhh--cchhHHHHHHHHHhcceeeeccCCCcccccccccHHH
Confidence 799999999999999 4457678899999999999988643 459999999999999999999999844432 1000
Q ss_pred cccccC-------CCccccccccccccccCCCCccchHHHHHhh----------------------c-ccCCceeEEEEe
Q 031696 81 DINITS-------DPVSLQVTPKRHGVMDVEPKEESSLVALFYN----------------------I-QINEVRPVFDVY 130 (155)
Q Consensus 81 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------------------~-~~~~~~i~F~Vy 130 (155)
.|+.-. .+..++ ..+....-+++..+.+.+|.+ + ..+++.++|++|
T Consensus 188 iw~~k~a~~~~L~~p~~i~----es~~f~~~~~r~~~~s~LL~d~~~~d~~~v~Dp~yLp~~~~k~~~k~spie~tfs~~ 263 (364)
T KOG4772|consen 188 IWTLKDAITWRLLSPSKIQ----ESSCFSEFFYRRDTVSKLLYDMLICDARSVFDPVYLPNSQFKEFQKSSPIEPTFSFV 263 (364)
T ss_pred HHHHHHHHhccCCCchhhh----hhhhhhhhhhhhhHHHHHHHhhhhcccccccchhcCcchhhhhhcccCCCCCcceee
Confidence 000000 000000 001111111222222223322 1 347899999999
Q ss_pred cCCCCCcccCCCCCCEEEEEeee
Q 031696 131 LPNRKFKKSCPGDPSFLLYLTCK 153 (155)
Q Consensus 131 kP~~~FkKssPg~PdF~i~Vv~~ 153 (155)
+|.++|+||.|+.|||++||.++
T Consensus 264 kpfS~fgks~~s~pdf~v~v~~~ 286 (364)
T KOG4772|consen 264 KPFSNFGKSDPSLPDFQVFVYNK 286 (364)
T ss_pred cccccccCCCCCCCceeEEEEec
Confidence 99999999999999999999875
No 2
>PRK09297 tRNA-splicing endonuclease subunit alpha; Reviewed
Probab=99.47 E-value=1.6e-14 Score=114.67 Aligned_cols=72 Identities=26% Similarity=0.305 Sum_probs=65.1
Q ss_pred CcchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696 4 PTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI 76 (155)
Q Consensus 4 ~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~ 76 (155)
+-.|-|+||+||+|+|.|+|.++++.+||++++++.+.. .+..++.+|.||+|||++||+|+ |||++|.+|.
T Consensus 34 ~L~Ls~~Ea~yL~~~g~L~v~~~~~~~~s~~el~~~~~~-~~~~F~~~y~VY~dLr~rG~~vk~G~kfG~df~vY~ 108 (169)
T PRK09297 34 PLELSLIEALYLVEKGWLEVVDKDGELLSFEELYELARE-IIEKFDIKYLVYKDLRDRGYIVKSGLKYGSDFRVYE 108 (169)
T ss_pred cEEEcHHHHHHHHHCCCEEEEcCCCcccCHHHHHHHHHh-ccccHHHHhHHHHHHHHCCCccCCCCcCCeeEEEEC
Confidence 446789999999999999999888888999999999764 56789999999999999999998 9999999994
No 3
>TIGR00324 endA tRNA intron endonuclease. The enzyme catalyses the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini. The genes are homologous in Eucarya and Archea. The two yeast genes have been functionally studied (PubMed:97344075) and are two subunits of a heterotetramer enzyme in yeast the other two subunits of which have no known homologs.
Probab=99.45 E-value=3.6e-14 Score=112.95 Aligned_cols=71 Identities=18% Similarity=0.272 Sum_probs=64.2
Q ss_pred cchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696 5 TAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI 76 (155)
Q Consensus 5 ~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~ 76 (155)
-.|-|+||+||+++|.|+|.++++.+||++++.+.+.. .+..++.+|.||+|||++||+|+ |||++|.+|.
T Consensus 36 l~LsliEa~yL~~~g~l~v~~~~~~~ls~~el~~~~~~-~~~~f~~~y~VY~dLR~rG~~vk~G~kFG~dF~vY~ 109 (170)
T TIGR00324 36 LNLSLIESLYLIDLGKLRLIRSDSEPLSREELSDLARK-VERGFMRKYLVYKDLRDRGYVVKTGFKFGADFRLYE 109 (170)
T ss_pred cEEeHHHHHHHHhCCcEEEEcCCCCcCCHHHHHHHHHh-ccccHHHhhHHHHHHHHCCCEecCCcccCceEEEEC
Confidence 35779999999999999998878889999999999763 56679999999999999999998 9999999994
No 4
>COG1676 SEN2 tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.3e-11 Score=99.57 Aligned_cols=72 Identities=28% Similarity=0.332 Sum_probs=64.6
Q ss_pred CcchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696 4 PTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI 76 (155)
Q Consensus 4 ~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~ 76 (155)
+--|=++||+||.|+|.|.+.+.++.++|++|++.+... ....++.+|.||++||++||||+ |||+.|.+|.
T Consensus 45 ~l~ls~~ea~yl~e~g~l~~~~~~~~~~s~eel~~~~~~-~~~~f~~~y~VY~dLr~rG~vvktG~KfG~~FrvY~ 119 (181)
T COG1676 45 PLQLSLIEALYLAERGFLKVESRDGKILSFEELMDLGAE-KEESFDERYLVYRDLRDRGYVVKTGLKFGSDFRVYR 119 (181)
T ss_pred cceecHHHHHHHhhcceEeeccCCCccccHHHHHHHHhh-cccccceeeeehhhHHhCceEECccceeeeEEEEec
Confidence 344568999999999999998888899999999999664 45679999999999999999998 9999999994
No 5
>PRK09300 tRNA splicing endonuclease; Reviewed
Probab=99.08 E-value=8.2e-11 Score=102.40 Aligned_cols=66 Identities=17% Similarity=0.238 Sum_probs=57.8
Q ss_pred cchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecCCCceeec
Q 031696 5 TAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHGVPWIVKI 76 (155)
Q Consensus 5 ~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g~~~~~~~ 76 (155)
-.|=|+||+||+|||.|++.+ + +|++++++.+.. . ..++.+|.||++||++||+|+--|++|.+|.
T Consensus 34 L~LslvEalYL~~~g~l~v~~--~--~~~eel~~~~~~-~-~~f~~~y~VY~dLR~rGy~vk~gg~dF~vY~ 99 (330)
T PRK09300 34 LELAPVEAAYLLFRGKIEIVD--G--LGFRDLFARASL-R-PNFELRYLVYKDLRERGYYVQPGDADFRVYP 99 (330)
T ss_pred eEEcHHHHHHHHHcCCEEEec--C--CCHHHHHHHhhh-c-ccchheehHHHHHHHCCceeccCCccEEEEc
Confidence 357799999999999999972 2 999999999664 3 7899999999999999999997788999984
No 6
>PRK09300 tRNA splicing endonuclease; Reviewed
Probab=99.06 E-value=6.9e-11 Score=102.88 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=59.2
Q ss_pred cchhHHHHHHHHhhCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696 5 TAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI 76 (155)
Q Consensus 5 ~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~ 76 (155)
-.|=|+||+||+++|.|+| ..||++++.+.+.. ..+.+..+|.||+|||++||+|+ |||++|.+|.
T Consensus 199 L~LslvEA~yL~~~g~L~v-----~~~~~~el~~~~~~-~~~~F~~~y~VY~dLR~rG~~vk~G~KFG~DF~vY~ 267 (330)
T PRK09300 199 LQLSLVEAAYLLERGVLSV-----EILDADEFVERARE-VEGEFDRKLAVYRDLRERGFVPKTGFKFGSDFRVYE 267 (330)
T ss_pred eeECHHHHHHHHhCCCEEE-----eeCCHHHHHHHHhh-cccchHhhhHHHHHHHHCCCEecCCcccCceEEEEC
Confidence 3577999999999999999 45999999999764 45679999999999999999999 9999999994
No 7
>PF12928 tRNA_int_end_N2: tRNA-splicing endonuclease subunit sen54 N-term; InterPro: IPR024336 tRNA-splicing endonucleases (3.1.27.9 from EC) catalyse the endonucleolytic cleavage of pre tRNA at the 5' and 3' splice sites to release the intron and produces two half tRNA molecules bearing 5' hydroxyl and 2', 3'-cyclic phosphate termini [, ]. The genes encoding these proteins are homologous in eukaryotes and archea. The eukaryotic tRNA-splicing endonucleases are heterotetrameric while the archaeal endonucleases can be split into homodimeric and homotetrameric subgroups. This entry represents the N-terminal domain of Sen54, a non-catalytic subunit of the tRNA-splicing endonuclease complex. Defects in human Sen54 are a cause of pontocerebellar hypoplasia type 4 [].
Probab=98.48 E-value=7.2e-08 Score=67.01 Aligned_cols=23 Identities=26% Similarity=0.124 Sum_probs=20.6
Q ss_pred CcchhHHHHHHHHhhCCEEEecC
Q 031696 4 PTAQLRRLCRFLAEIGALYLLDN 26 (155)
Q Consensus 4 ~~~~lpeEaLYL~ErG~L~v~~~ 26 (155)
-.+|+|||||||+|||+|+|+.+
T Consensus 49 ~~~L~pEEalyLvErGsL~l~~~ 71 (72)
T PF12928_consen 49 KLWLLPEEALYLVERGSLDLWWP 71 (72)
T ss_pred eEEEeHHHHHHHHhcCcEEEEeC
Confidence 46899999999999999999863
No 8
>PF02778 tRNA_int_endo_N: tRNA intron endonuclease, N-terminal domain; InterPro: IPR006678 This entry represents a 2-layer alpha/beta domain found at the N-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 1 (N-terminal) and 3 in the homodimeric enzymes []. tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1A79_D 2CV8_A 3P1Z_B 3AJV_B 3IEY_A 2ZYZ_D 2GJW_D 1R0V_A 3P1Y_C 1R11_B ....
Probab=97.85 E-value=2e-05 Score=54.27 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=28.0
Q ss_pred CcchhHHHHHHHHhhCCEEEecCCCcccCHHHHH
Q 031696 4 PTAQLRRLCRFLAEIGALYLLDNNDLCLPLKEIY 37 (155)
Q Consensus 4 ~~~~lpeEaLYL~ErG~L~v~~~~g~~lSlq~~y 37 (155)
+-.|=|+||+||+++|.|+|. .+|+.||+++++
T Consensus 35 ~L~LslvEa~YL~~~g~l~v~-~~g~~ls~~el~ 67 (67)
T PF02778_consen 35 RLQLSLVEALYLLEKGKLEVY-EDGKKLSFEELW 67 (67)
T ss_dssp CEEEEHHHHHHHHHTTSEEEE-TTSCEE-HHHHH
T ss_pred cEEEeHHHHHHHHhCCcEEEe-eCCcCCCHHHhC
Confidence 345669999999999999998 789999999985
No 9
>PRK09539 tRNA-splicing endonuclease subunit beta; Reviewed
Probab=97.36 E-value=5.6e-05 Score=58.10 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCcceeeeeeccccCccEEee---ecCCCceee
Q 031696 45 SGCSWELFEVYRHLKSLGYIVG---RHGVPWIVK 75 (155)
Q Consensus 45 ~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~ 75 (155)
+..+|++|.||+|||++||+|+ +||+.+..+
T Consensus 31 ~~~~~~kylVYkDLR~RGyvVk~G~kfg~~~~~~ 64 (124)
T PRK09539 31 YLVNWDKVDVFVDLKQRGRKTIDGIDEISLIIKD 64 (124)
T ss_pred hhcccceEEEehhHHhCCCeeccCCceeEEEEec
Confidence 4468999999999999999998 666655444
No 10
>PF01974 tRNA_int_endo: tRNA intron endonuclease, catalytic C-terminal domain; InterPro: IPR006677 This entry represents a 3-layer alpha/beta/alpha domain found as the catalytic domain at the C-terminal in homotetrameric tRNA-intron endonucleases [], and as domains 2 and 4 (C-terminal) in the homodimeric enzymes []. tRNA-intron endonucleases (3.1.27.9 from EC) remove tRNA introns by cleaving pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-hydroxyl termini []. These enzymes recognise a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp []. Although homotetrameric enzymes contain four active sites, only two participate in the cleavage, and should therefore, be considered as a dimer of dimers.; GO: 0000213 tRNA-intron endonuclease activity, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 3IEY_B 3IF0_X 2CV8_A 3P1Z_B 3AJV_B 2GJW_D 1R0V_A 3P1Y_C 1R11_B 1RLV_A ....
Probab=97.24 E-value=3.5e-05 Score=54.34 Aligned_cols=29 Identities=38% Similarity=0.818 Sum_probs=25.6
Q ss_pred cceeeeeeccccCccEEee---ecCCCceeec
Q 031696 48 SWELFEVYRHLKSLGYIVG---RHGVPWIVKI 76 (155)
Q Consensus 48 ~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~ 76 (155)
|+.+|.||+|||++||+|+ +||++|.+|.
T Consensus 1 F~~~y~vY~dLr~rG~~v~~G~kfG~df~vY~ 32 (85)
T PF01974_consen 1 FWRKYAVYRDLRSRGYVVKPGIKFGCDFLVYP 32 (85)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEGGGTSSEEEET
T ss_pred CchhhHHHHHHHHCCCEECccCcCCceEEEEe
Confidence 4678999999999999998 9999999993
No 11
>KOG4685 consensus tRNA splicing endonuclease SEN2 [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.00033 Score=59.73 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=59.1
Q ss_pred chhHHHHHHHHh-hCCEEEecCCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee---ecCCCceeec
Q 031696 6 AQLRRLCRFLAE-IGALYLLDNNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG---RHGVPWIVKI 76 (155)
Q Consensus 6 ~~lpeEaLYL~E-rG~L~v~~~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~ 76 (155)
-|-||||.||.- -+.|.|.-+ ..+++-.+++..|.. ....+-..|.+|.|||..|+||+ +||+++-+|.
T Consensus 114 qLs~eEAffL~y~lkci~I~~~-k~l~~~v~~w~am~~-~~~~F~~~y~~y~hlrskGWvvrsGlkyG~DfllYr 186 (271)
T KOG4685|consen 114 QLSPEEAFFLSYALKCIKISLN-KCLLNEVDLWTAMRS-LQPNFGKLYKAYHHLRSKGWVVRSGLKYGVDFLLYR 186 (271)
T ss_pred hcCHHHHHHHHhhhceeEEehh-hccccHHHHHHHHhh-cchhhHHHHHHHHHHHHcCcEecccccccceEEEEe
Confidence 356999999974 588888754 678999999999765 56779999999999999999999 8999999995
No 12
>KOG4133 consensus tRNA splicing endonuclease [Translation, ribosomal structure and biogenesis]
Probab=91.06 E-value=0.041 Score=47.31 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=26.2
Q ss_pred ceeeeeeccccCccEEee---ecCCCceeec
Q 031696 49 WELFEVYRHLKSLGYIVG---RHGVPWIVKI 76 (155)
Q Consensus 49 ~~~Y~VY~~Lkr~GYIV~---R~g~~~~~~~ 76 (155)
..+|.+|++|.++||.+. |||.+|.+|+
T Consensus 194 ~lrY~iyKdLwdrGfyLs~ggrFGgdFlvYP 224 (290)
T KOG4133|consen 194 ELRYSIYKDLWDRGFYLSPGGRFGGDFLVYP 224 (290)
T ss_pred hhHHHHHHHHHHcCceeCcccccCceeEecC
Confidence 578999999999999997 9999999994
No 13
>KOG4772 consensus Predicted tRNA-splicing endonuclease subunit [Translation, ribosomal structure and biogenesis]
Probab=73.81 E-value=1.6 Score=38.90 Aligned_cols=28 Identities=57% Similarity=1.030 Sum_probs=24.4
Q ss_pred CCceeEEE-EecCCCCCc---ccCCCCCCEEE
Q 031696 121 NEVRPVFD-VYLPNRKFK---KSCPGDPSFLL 148 (155)
Q Consensus 121 ~~~~i~F~-VykP~~~Fk---KssPg~PdF~i 148 (155)
..-+++|| ||+|++.|+ |++|++|-|..
T Consensus 231 ~d~~~v~Dp~yLp~~~~k~~~k~spie~tfs~ 262 (364)
T KOG4772|consen 231 CDARSVFDPVYLPNSQFKEFQKSSPIEPTFSF 262 (364)
T ss_pred cccccccchhcCcchhhhhhcccCCCCCccee
Confidence 35789999 999999999 99999996654
No 14
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=58.76 E-value=3.1 Score=35.58 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=35.0
Q ss_pred EEEecCCCcccCHHHHHHHHhcc-cCC-CcceeeeeeccccCccEEee
Q 031696 21 LYLLDNNDLCLPLKEIYEKIANE-KSG-CSWELFEVYRHLKSLGYIVG 66 (155)
Q Consensus 21 L~v~~~~g~~lSlq~~y~~~~~~-~~~-~~~~~Y~VY~~Lkr~GYIV~ 66 (155)
|.+.......|+.+++++++... ++| |+..+-+.+.-|+.+||-|.
T Consensus 41 ldv~~g~~i~ld~~~l~~KlV~~~RGGyCfE~N~Lf~~~L~~LGF~v~ 88 (281)
T PRK15047 41 LDVLLPREIQLDDQSLEEKLVIARRGGYCFEQNGLFERVLRELGFNVR 88 (281)
T ss_pred chhhcCCCCCCCHHHHHHHHhcCCCCEEcHhHHHHHHHHHHHcCCcEE
Confidence 44433566789999999998853 444 67777777788999999998
No 15
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=47.79 E-value=1.7 Score=35.09 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=26.3
Q ss_pred CCcccCHHHHHHHHh-cccCC-CcceeeeeeccccCccEEeee
Q 031696 27 NDLCLPLKEIYEKIA-NEKSG-CSWELFEVYRHLKSLGYIVGR 67 (155)
Q Consensus 27 ~g~~lSlq~~y~~~~-~~~~~-~~~~~Y~VY~~Lkr~GYIV~R 67 (155)
...+++++++++.+. .+++| |+..+-+-+.-|+.+||-|.-
T Consensus 27 ~~~~l~~~~i~~kiv~~~rGG~C~elN~lf~~lL~~lGf~v~~ 69 (240)
T PF00797_consen 27 EPISLDPDAIFDKIVRRGRGGYCFELNGLFYWLLRELGFDVTL 69 (240)
T ss_dssp -----SHHHHHHHHTTTT--B-HHHHHHHHHHHHHHCT-EEEE
T ss_pred CccccCHHHHHHHHHhcCCCeEhHHHHHHHHHHHHHCCCeEEE
Confidence 456799999999876 34455 566677777779999999983
No 16
>PF03987 Autophagy_act_C: Autophagocytosis associated protein, active-site domain ; InterPro: IPR007135 Proteins in this entry belong to the Atg3 group of proteins and the Atg3 conjugation enzymes. Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. Atg3 is the E2 enzyme for the LC3 lipidation process []. It is essential for autophagocytosis. The super protein complex, the Atg16L complex, consists of multiple Atg12-Atg5 conjugates. Atg16L has an E3-like role in the LC3 lipidation reaction. The activated intermediate, LC3-Atg3 (E2), is recruited to the site where the lipidation takes place []. Atg3 catalyses the conjugation of Atg8 and phosphatidylethanolamine (PE). Atg3 has an alpha/beta-fold, and its core region is topologically similar to canonical E2 enzymes. Atg3 has two regions inserted in the core region and another with a long alpha-helical structure that protrudes from the core region as far as 30 A []. It interacts with atg8 through an intermediate thioester bond between Cys-288 and the C-terminal Gly of atg8. It also interacts with the C-terminal region of the E1-like atg7 enzyme. Autophagocytosis is a starvation-induced process responsible for transport of cytoplasmic proteins to the vacuole. The cysteine residue within the HPC motif is the putative active-site residue for recognition of the Apg5 subunit of the autophagosome complex [].; PDB: 2DYT_A.
Probab=29.82 E-value=40 Score=22.07 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=13.6
Q ss_pred EEEecCCCcccCHHHHHHHHhc
Q 031696 21 LYLLDNNDLCLPLKEIYEKIAN 42 (155)
Q Consensus 21 L~v~~~~g~~lSlq~~y~~~~~ 42 (155)
+.+++++|.+++++++++.+..
T Consensus 15 f~~~~~~g~~l~~~~~~~~~~~ 36 (62)
T PF03987_consen 15 FRGYDEDGSPLSLEEVYEDLSP 36 (62)
T ss_dssp EEEEETT--B--HHHHHTTS-T
T ss_pred EEEECCCCCCCCHHHHHHhhcc
Confidence 4667788999999999987653
No 17
>PF13592 HTH_33: Winged helix-turn helix
Probab=29.65 E-value=13 Score=24.19 Aligned_cols=41 Identities=32% Similarity=0.369 Sum_probs=30.5
Q ss_pred CcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEeeecC
Q 031696 28 DLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVGRHG 69 (155)
Q Consensus 28 g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~R~g 69 (155)
|...+..++-+.+.. ..|.....=.||.-|+|+|+.-+|-.
T Consensus 2 ~~~wt~~~i~~~I~~-~fgv~ys~~~v~~lL~r~G~s~~kp~ 42 (60)
T PF13592_consen 2 GGRWTLKEIAAYIEE-EFGVKYSPSGVYRLLKRLGFSYQKPR 42 (60)
T ss_pred CCcccHHHHHHHHHH-HHCCEEcHHHHHHHHHHcCCccccCC
Confidence 344667777777553 56777788889999999999887543
No 18
>COG2162 NhoA Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.49 E-value=22 Score=30.91 Aligned_cols=49 Identities=22% Similarity=0.197 Sum_probs=34.5
Q ss_pred CEEEecCCCcccCHHHHHHHHhcc-cCC-CcceeeeeeccccCccEEeeec
Q 031696 20 ALYLLDNNDLCLPLKEIYEKIANE-KSG-CSWELFEVYRHLKSLGYIVGRH 68 (155)
Q Consensus 20 ~L~v~~~~g~~lSlq~~y~~~~~~-~~~-~~~~~Y~VY~~Lkr~GYIV~R~ 68 (155)
+|++.-.....|+.+++.+++... ++| |+..+=..+.-|+.+||-|+++
T Consensus 41 NlDvLL~~~i~i~~~al~~KLv~~rRGGyCfElNglf~~vL~~lGF~v~~l 91 (275)
T COG2162 41 NLDVLLGRPIQLDPQALEDKLVLARRGGYCFELNGLFGRVLRELGFNVRLL 91 (275)
T ss_pred cchhhcCCCccCCHHHHHHHHHhccccceehhhhhHHHHHHHHcCCcceee
Confidence 344443344569999999998753 333 5666667777799999999964
No 19
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=26.52 E-value=7.2 Score=31.38 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=41.4
Q ss_pred chhHHHHHHHH-hhCCEEEec---------CCCcccCHHHHHHHHhcccCCCcceeeeeeccccCccEEee
Q 031696 6 AQLRRLCRFLA-EIGALYLLD---------NNDLCLPLKEIYEKIANEKSGCSWELFEVYRHLKSLGYIVG 66 (155)
Q Consensus 6 ~~lpeEaLYL~-ErG~L~v~~---------~~g~~lSlq~~y~~~~~~~~~~~~~~Y~VY~~Lkr~GYIV~ 66 (155)
+.++-|++||+ |+|+..+-+ -+| ..|++|+.+.+..+ .. ..+-..+-..|-++||++-
T Consensus 9 ~~~~~~~v~l~~e~~~~~l~~~~~~~L~~lLdG-~rt~~eI~~~l~~~-~p-~~~v~~~L~~L~~~G~l~~ 76 (193)
T TIGR03882 9 EILGPEAVFLLSERGSFALSGALYCQLAPLLDG-RRTLDEIIAALAGR-FP-AEEVLYALDRLERRGYLVE 76 (193)
T ss_pred EEeCCCeEEEEeCCCcEEEcchhHHHHHHHHcC-CCCHHHHHHHhhcc-CC-HHHHHHHHHHHHHCCCEec
Confidence 34566777887 999888752 133 58999999997642 11 4456677778999999996
No 20
>PF11625 DUF3253: Protein of unknown function (DUF3253); InterPro: IPR021660 This bacterial family of proteins has no known function. ; PDB: 2NS0_A.
Probab=20.53 E-value=71 Score=22.98 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=19.2
Q ss_pred HHHHHHHhhCCEEEecCCCcccCHHHH
Q 031696 10 RLCRFLAEIGALYLLDNNDLCLPLKEI 36 (155)
Q Consensus 10 eEaLYL~ErG~L~v~~~~g~~lSlq~~ 36 (155)
+.|.=|++.|.|+|.. .|++++.+++
T Consensus 48 ~~A~~L~~~G~i~I~q-kG~~Vdp~~~ 73 (83)
T PF11625_consen 48 AAARRLARAGRIEITQ-KGKPVDPETF 73 (83)
T ss_dssp HHHHHHHHTTSEEEEE-TTEE--TTT-
T ss_pred HHHHHHHHCCcEEEEE-CCEecCcccC
Confidence 4678899999999984 7888877655
No 21
>COG1772 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.51 E-value=2.1e+02 Score=23.26 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=13.0
Q ss_pred HHHHHHhhCCEEEec
Q 031696 11 LCRFLAEIGALYLLD 25 (155)
Q Consensus 11 EaLYL~ErG~L~v~~ 25 (155)
+-++|+|+|.+.+.|
T Consensus 67 yl~~L~e~n~l~~~D 81 (178)
T COG1772 67 YLLVLAESNKLHVID 81 (178)
T ss_pred hhHhhHhcCceEEec
Confidence 457999999999996
No 22
>PF05284 DUF736: Protein of unknown function (DUF736); InterPro: IPR007948 This family consists of several uncharacterised bacterial proteins of unknown function.
Probab=20.24 E-value=91 Score=23.04 Aligned_cols=19 Identities=26% Similarity=0.621 Sum_probs=14.2
Q ss_pred cCCCCCcccCCCCCCEEEEEe
Q 031696 131 LPNRKFKKSCPGDPSFLLYLT 151 (155)
Q Consensus 131 kP~~~FkKssPg~PdF~i~Vv 151 (155)
-|+.+ |.++-.|||+|..-
T Consensus 30 vP~~~--~~~e~aPdyRV~~~ 48 (107)
T PF05284_consen 30 VPNES--KDSENAPDYRVYAG 48 (107)
T ss_pred EeCCC--CCCCCCCCEEEEec
Confidence 45555 78889999998764
Done!