BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031699
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DO8|A Chain A, The Crystal Structure Of The Protein With Unknown Function
From Archaeoglobus Fulgidus
pdb|3DO8|B Chain B, The Crystal Structure Of The Protein With Unknown Function
From Archaeoglobus Fulgidus
Length = 148
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V LGGTF+ LH+GH+ + + +L I +GV M + + L P R NV+
Sbjct: 3 VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVL--PFAIRAENVKR 60
Query: 84 YI---KSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQL 140
Y+ +PE+V IT+PYG ++ D + E +VVS ET L +N+KR + G ++
Sbjct: 61 YVMRKYGFEPEIV----KITNPYGKTL-DVDFEYLVVSPETYEMALKINQKREELGKRKI 115
Query: 141 KV 142
+
Sbjct: 116 TI 117
>pdb|3NV7|A Chain A, Crystal Structure Of H.Pylori Phosphopantetheine
Adenylyltransferase Mutant I4vN76Y
Length = 157
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDG----PMLTNKQFAELIQPVDERMRNVEA 83
GTFD + +GH + S+EL ++++V V PM + + ++IQ + +NVE
Sbjct: 9 GTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNVEC 67
>pdb|3OTW|A Chain A, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|B Chain B, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|C Chain C, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|D Chain D, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|E Chain E, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
pdb|3OTW|F Chain F, Structural And Functional Studies Of Helicobacter Pylori
Wild-Type And Mutated Proteins Phosphopantetheine
Adenylyltransferase
Length = 163
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDG----PMLTNKQFAELIQPVDERMRNVEA 83
GTFD + +GH + S+EL ++++V V PM + + ++IQ + +NVE
Sbjct: 15 GTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKNVEC 73
>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
Bacillus Subtilis
pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
Cdp-glycerol
Length = 129
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 10/96 (10%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V+ GTFD LH GH L+ + +L D +VV + KQ + + R +E
Sbjct: 4 VITYGTFDLLHWGHIKLLERAKQLG-DYLVVAISTDEFNLQKQ-KKAYHSYEHRKLILET 61
Query: 84 --YIKSIKPELVVQTEPITDPYGPSIVDENLEAIVV 117
Y+ + PE + + I+D N++ V+
Sbjct: 62 IRYVDEVIPEKNWEQKK------QDIIDHNIDVFVM 91
>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
pdb|3GLV|B Chain B, Crystal Structure Of The Lipopolysaccharide Core
Biosynthesis Protein From Thermoplasma Volcanium Gss1
Length = 143
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN 64
V+ G FD LH GH +LK S +L + +VV D N
Sbjct: 5 VMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNN 45
>pdb|2YSK|A Chain A, Crystal Structure Of A Hypothetical Protein Ttha1432 From
Thermus Thermophilus
Length = 145
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVG-----VCDGPMLTNKQFAELIQPVDE--RMRN 80
GT DR H + L L+A RDR+ V PML + E P + + R+
Sbjct: 28 GTEDR-HKAY-LALRAVLHALRDRLTVEEVAQLAAQLPMLVRGLYYEGWDPTGKPLKERH 85
Query: 81 VEAYIKSIKPELVVQTEPITDP 102
EA++ + EL + P DP
Sbjct: 86 KEAFLAHVAEELKTPSGPAVDP 107
>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain Of
The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
Length = 308
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 18/73 (24%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
+ LGG D +H A D+ GP++ + D N +
Sbjct: 197 IYLGGDLDNVHG------------AEDKY------GPLIGKVDLMKFNHHHDTNKSNTKD 238
Query: 84 YIKSIKPELVVQT 96
+IK++ P L+VQT
Sbjct: 239 FIKNLSPSLIVQT 251
>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase
Rsmh From E.Coli
Length = 347
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 5 ILDESVVNSNISPDNSYGAVVLGGTFDRLHDGH-RLFLKASAELAR 49
+LDE+V NI PD Y + GTF R GH RL L E R
Sbjct: 45 LLDEAVNGLNIRPDGIY----IDGTFGR--GGHSRLILSQLGEEGR 84
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From Streptococcus
Pneumoniae
Length = 547
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 18/73 (24%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
+ LGG D +H A D+ GP++ + D N +
Sbjct: 198 IYLGGDLDNVHG------------AEDKY------GPLIGKVDLMKFNHHHDTNKSNTKD 239
Query: 84 YIKSIKPELVVQT 96
+IK++ P L+VQT
Sbjct: 240 FIKNLSPSLIVQT 252
>pdb|3S84|A Chain A, Dimeric Apoa-Iv
pdb|3S84|B Chain B, Dimeric Apoa-Iv
Length = 273
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 43 ASAELARDRIVVGVCD--GPMLTN-----KQFAEL----IQPVDERMRNVEAYIKSIKPE 91
ASAE R R+ D G + N K AEL Q V+E R VE Y ++
Sbjct: 176 ASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKA 235
Query: 92 LVVQTEPITDPYGPSIVD 109
LV Q E + GP D
Sbjct: 236 LVQQMEQLRQKLGPHAGD 253
>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
Thermotoga Maritima
Length = 293
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELA----RDRIVVGVCDGPMLTNKQFAELIQPVDERMR 79
VV G FD +H GH+ L+ E+A D ++ + P F L+ V+ R+
Sbjct: 2 VVSIGVFDGVHIGHQKVLRTXKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLXTVESRVE 61
Query: 80 NVEAYIKSI 88
+ Y +++
Sbjct: 62 XLSRYARTV 70
>pdb|3ND5|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND5|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) From Enterococcus Faecalis
pdb|3ND6|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND6|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase (Ppat) In Complex With Atp From
Enterococcus Faecalis
pdb|3ND7|A Chain A, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|B Chain B, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|C Chain C, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|D Chain D, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|E Chain E, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
pdb|3ND7|F Chain F, Crystal Structure Of Phosphopantetheine
Adenylyltransferase From Enterococcus Faecalis In The
Ligand-Unbound State And In Complex With Atp And
Pantetheine
Length = 171
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGV----CDGPMLTNKQFAELIQPVDERMRNV 81
G+FD + +GH ++ SA+L D +++GV + T ++ LI+ + M NV
Sbjct: 9 GSFDPMTNGHLNLIERSAKLF-DEVIIGVFINTSKQTLFTPEEKKYLIEEATKEMPNV 65
>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
Corynebacterium Ammoniagenes
Length = 338
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARD 50
DNS AV +G FD +H GH+ + A+ E AR+
Sbjct: 15 DNS--AVTIG-VFDGVHRGHQKLINATVEKARE 44
>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
Ammoniagenes
Length = 338
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARD 50
DNS AV +G FD +H GH+ + A+ E AR+
Sbjct: 15 DNS--AVTIG-VFDGVHRGHQKLINATVEKARE 44
>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
Thermotoga Maritima, Tm379
pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase
From Thermotoga Maritina
pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase
From Thermotoga Maritina
Length = 293
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 28 GTFDRLHDGHRLFLKASAELA----RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
G FD +H GH+ L+ E+A D ++ + P F L+ V+ R+ +
Sbjct: 6 GVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVEMLSR 65
Query: 84 YIKSI 88
Y +++
Sbjct: 66 YARTV 70
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 25.8 bits (55), Expect = 9.8, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 75 DERMRNVEAYIKSIKPELVVQ-----TEPIT-DPYGPSIVDENLEAIVVSKE-TLPGGLS 127
++ +R +AY++S+ PE + + T P T PY V+ENL+ + K G
Sbjct: 151 EQLIRQGDAYVESVSPEELSRLRGNATTPGTPSPYRDRSVEENLDLLRRMKAGEFADGEH 210
Query: 128 VNKKRADRGLSQLKVWVPVL 147
V + + D +K+ PVL
Sbjct: 211 VLRAKIDLTAPNMKLRDPVL 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,587,190
Number of Sequences: 62578
Number of extensions: 171620
Number of successful extensions: 409
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 20
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)