Query 031699
Match_columns 154
No_of_seqs 160 out of 1320
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:08:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02164 PPAT_CoAS phosphopante 100.0 1.1E-41 2.5E-46 257.8 15.6 128 23-150 1-128 (143)
2 PLN02388 phosphopantetheine ad 100.0 9.5E-41 2.1E-45 260.6 16.5 150 3-152 1-150 (177)
3 COG1019 Predicted nucleotidylt 100.0 1E-40 2.2E-45 252.6 11.5 132 19-153 3-134 (158)
4 KOG3351 Predicted nucleotidylt 100.0 3.7E-39 8.1E-44 260.5 9.8 138 13-150 134-271 (293)
5 PRK00777 phosphopantetheine ad 100.0 8E-36 1.7E-40 228.0 15.7 129 21-152 1-129 (153)
6 PRK01170 phosphopantetheine ad 100.0 5.8E-34 1.3E-38 239.8 13.4 126 22-152 1-126 (322)
7 COG1057 NadD Nicotinic acid mo 99.7 4.4E-18 9.6E-23 135.1 6.8 91 20-115 2-93 (197)
8 PRK06973 nicotinic acid mononu 99.7 2.7E-17 5.9E-22 134.2 9.1 92 18-115 19-114 (243)
9 PRK00071 nadD nicotinic acid m 99.7 1.2E-16 2.7E-21 126.3 7.3 90 20-114 3-93 (203)
10 PRK00168 coaD phosphopantethei 99.7 2.9E-16 6.2E-21 120.3 7.9 69 21-97 1-69 (159)
11 PRK08887 nicotinic acid mononu 99.7 2.1E-16 4.5E-21 122.9 7.1 88 21-115 2-92 (174)
12 TIGR00482 nicotinate (nicotina 99.7 1.3E-16 2.9E-21 125.3 5.8 86 25-115 1-87 (193)
13 cd02167 NMNAT_NadR Nicotinamid 99.6 3.6E-16 7.7E-21 120.0 7.5 81 23-108 1-82 (158)
14 PRK13964 coaD phosphopantethei 99.6 1.3E-15 2.7E-20 115.2 10.3 67 21-95 1-67 (140)
15 PRK07152 nadD putative nicotin 99.6 3E-16 6.4E-21 133.1 7.2 90 21-115 1-91 (342)
16 TIGR01510 coaD_prev_kdtB pante 99.6 3.9E-16 8.3E-21 119.1 7.2 77 23-114 1-77 (155)
17 cd02166 NMNAT_Archaea Nicotina 99.6 8.1E-16 1.8E-20 118.4 8.5 93 23-119 1-101 (163)
18 cd02168 NMNAT_Nudix Nicotinami 99.6 8.1E-16 1.7E-20 120.5 8.3 90 23-116 1-92 (181)
19 cd02163 PPAT Phosphopantethein 99.6 7.6E-16 1.6E-20 117.3 7.0 92 23-129 1-97 (153)
20 cd02165 NMNAT Nicotinamide/nic 99.6 6.2E-16 1.3E-20 121.1 6.6 87 23-115 1-88 (192)
21 PRK05379 bifunctional nicotina 99.6 2.1E-15 4.5E-20 128.1 9.0 91 19-114 4-95 (340)
22 TIGR00125 cyt_tran_rel cytidyl 99.6 2.4E-15 5.1E-20 98.3 7.1 63 23-87 1-63 (66)
23 TIGR01527 arch_NMN_Atrans nico 99.6 2.1E-15 4.5E-20 116.8 7.8 104 23-137 1-111 (165)
24 PF01467 CTP_transf_2: Cytidyl 99.6 4.5E-16 9.7E-21 114.7 3.6 101 25-129 1-126 (157)
25 PRK13793 nicotinamide-nucleoti 99.6 2.9E-15 6.3E-20 118.8 8.2 92 20-116 3-94 (196)
26 cd02039 cytidylyltransferase_l 99.6 1.3E-14 2.8E-19 106.3 11.0 120 23-148 1-129 (143)
27 cd02173 ECT CTP:phosphoethanol 99.6 7.1E-15 1.5E-19 112.3 6.5 67 21-89 2-69 (152)
28 PRK01153 nicotinamide-nucleoti 99.5 1.5E-14 3.3E-19 112.7 8.1 86 23-112 2-88 (174)
29 COG0615 TagD Cytidylyltransfer 99.5 9.4E-15 2E-19 110.2 3.6 67 22-90 2-71 (140)
30 PLN02945 nicotinamide-nucleoti 99.5 3.4E-14 7.3E-19 115.3 6.7 90 19-115 20-115 (236)
31 cd02174 CCT CTP:phosphocholine 99.5 4.2E-14 9.1E-19 107.9 6.8 62 22-84 3-65 (150)
32 PLN02406 ethanolamine-phosphat 99.5 4E-15 8.6E-20 129.4 1.2 63 19-83 51-113 (418)
33 COG0669 CoaD Phosphopantethein 99.5 1.4E-13 3E-18 105.3 8.1 67 21-95 2-68 (159)
34 cd09286 NMNAT_Eukarya Nicotina 99.4 3.8E-13 8.2E-18 108.6 7.9 86 23-115 2-94 (225)
35 TIGR01526 nadR_NMN_Atrans nico 99.4 8.2E-13 1.8E-17 111.7 10.1 64 21-88 1-64 (325)
36 cd02170 cytidylyltransferase c 99.4 6.8E-13 1.5E-17 98.4 6.4 61 21-83 1-61 (136)
37 cd02171 G3P_Cytidylyltransfera 99.4 7.9E-13 1.7E-17 97.3 6.4 62 21-84 1-62 (129)
38 PTZ00308 ethanolamine-phosphat 99.4 1E-12 2.2E-17 112.5 7.4 68 19-88 190-258 (353)
39 COG2870 RfaE ADP-heptose synth 99.3 2.5E-13 5.5E-18 117.2 1.4 117 22-142 333-459 (467)
40 cd02156 nt_trans nucleotidyl t 99.3 3.7E-12 8.1E-17 90.8 6.8 58 23-84 1-58 (105)
41 PLN02413 choline-phosphate cyt 99.3 3.8E-12 8.3E-17 105.8 7.7 68 15-83 21-89 (294)
42 PRK08099 bifunctional DNA-bind 99.3 7.1E-12 1.5E-16 108.8 8.5 77 19-99 50-130 (399)
43 PLN02406 ethanolamine-phosphat 99.3 8.7E-12 1.9E-16 108.6 7.0 66 17-83 247-313 (418)
44 TIGR01518 g3p_cytidyltrns glyc 99.2 1.1E-11 2.4E-16 91.1 5.5 59 24-84 1-59 (125)
45 COG1056 NadR Nicotinamide mono 99.2 1.6E-10 3.4E-15 90.1 9.8 115 20-138 2-117 (172)
46 TIGR00124 cit_ly_ligase [citra 99.2 1.1E-10 2.4E-15 99.2 8.5 60 21-89 139-198 (332)
47 cd02172 RfaE_N N-terminal doma 99.2 1.2E-10 2.6E-15 88.0 7.3 61 21-83 4-64 (144)
48 KOG2803 Choline phosphate cyti 99.2 6.3E-11 1.4E-15 99.4 6.3 68 20-90 7-77 (358)
49 TIGR02199 rfaE_dom_II rfaE bif 99.1 1.2E-10 2.7E-15 87.8 7.1 63 21-84 11-74 (144)
50 PTZ00308 ethanolamine-phosphat 99.1 9.9E-11 2.1E-15 100.3 7.1 64 19-84 9-72 (353)
51 PRK11316 bifunctional heptose 98.9 2.1E-09 4.4E-14 94.1 6.6 61 21-82 340-401 (473)
52 smart00764 Citrate_ly_lig Citr 98.9 9.7E-09 2.1E-13 80.6 9.5 90 28-129 6-100 (182)
53 cd02169 Citrate_lyase_ligase C 98.9 6.2E-09 1.3E-13 87.4 7.2 62 18-88 111-172 (297)
54 cd02064 FAD_synthetase_N FAD s 98.8 2.1E-08 4.6E-13 78.0 6.8 61 24-84 2-68 (180)
55 KOG2803 Choline phosphate cyti 98.7 2E-08 4.4E-13 84.5 6.7 67 16-83 193-260 (358)
56 KOG2804 Phosphorylcholine tran 98.5 1.3E-07 2.7E-12 79.4 5.4 66 23-89 65-133 (348)
57 PRK13671 hypothetical protein; 98.5 2.9E-07 6.4E-12 77.4 6.9 54 28-84 7-61 (298)
58 PRK07143 hypothetical protein; 98.1 9.2E-06 2E-10 67.8 7.2 121 20-150 14-145 (279)
59 PRK05627 bifunctional riboflav 98.1 8.2E-06 1.8E-10 68.8 6.5 62 23-84 15-82 (305)
60 PF06574 FAD_syn: FAD syntheta 98.0 2E-05 4.4E-10 60.4 6.4 127 20-151 4-149 (157)
61 PF08218 Citrate_ly_lig: Citra 97.8 9.6E-05 2.1E-09 58.1 7.1 53 28-89 6-58 (182)
62 TIGR00339 sopT ATP sulphurylas 97.5 0.00062 1.3E-08 59.2 9.4 80 21-106 183-266 (383)
63 TIGR00083 ribF riboflavin kina 97.5 0.0003 6.4E-09 59.0 6.3 61 24-84 1-66 (288)
64 COG0196 RibF FAD synthase [Coe 97.4 0.00058 1.3E-08 57.8 6.9 64 21-84 15-84 (304)
65 PRK13670 hypothetical protein; 97.2 0.00067 1.4E-08 59.1 5.7 59 23-84 3-62 (388)
66 PF05636 HIGH_NTase1: HIGH Nuc 97.1 0.00083 1.8E-08 58.5 5.5 56 27-84 7-62 (388)
67 COG3053 CitC Citrate lyase syn 96.8 0.0064 1.4E-07 51.5 7.8 61 19-89 143-204 (352)
68 COG1323 Predicted nucleotidylt 96.7 0.0025 5.5E-08 55.0 4.7 54 28-84 8-62 (358)
69 KOG3199 Nicotinamide mononucle 96.2 0.0085 1.8E-07 48.4 4.9 102 25-139 12-117 (234)
70 TIGR00018 panC pantoate--beta- 95.6 0.027 5.9E-07 47.3 5.6 57 24-84 27-85 (282)
71 cd00560 PanC Pantoate-beta-ala 95.4 0.041 8.8E-07 46.1 6.0 58 23-84 26-85 (277)
72 PRK00380 panC pantoate--beta-a 95.3 0.051 1.1E-06 45.5 6.1 61 22-84 23-85 (281)
73 PLN02660 pantoate--beta-alanin 95.1 0.052 1.1E-06 45.6 5.8 58 23-84 25-84 (284)
74 PF01747 ATP-sulfurylase: ATP- 93.3 0.9 1.9E-05 36.7 9.1 72 23-100 22-95 (215)
75 cd00517 ATPS ATP-sulfurylase. 92.5 1.5 3.4E-05 37.9 10.1 73 21-99 156-231 (353)
76 PRK04149 sat sulfate adenylylt 92.2 1.7 3.6E-05 38.2 10.0 64 21-91 186-249 (391)
77 COG2046 MET3 ATP sulfurylase ( 92.0 1.5 3.3E-05 38.4 9.3 64 20-90 182-245 (397)
78 PF02569 Pantoate_ligase: Pant 91.7 0.19 4.1E-06 42.2 3.4 37 21-59 22-58 (280)
79 PRK13477 bifunctional pantoate 88.7 0.39 8.6E-06 43.5 3.1 59 22-83 21-82 (512)
80 COG0414 PanC Panthothenate syn 86.9 1.1 2.3E-05 37.8 4.3 37 21-59 22-58 (285)
81 PRK05537 bifunctional sulfate 86.0 7.7 0.00017 35.5 9.8 64 21-90 186-249 (568)
82 PLN02341 pfkB-type carbohydrat 79.3 0.5 1.1E-05 41.9 -0.5 29 20-48 413-441 (470)
83 KOG2014 SMT3/SUMO-activating c 67.1 13 0.00029 31.9 5.1 62 75-136 84-145 (331)
84 KOG3042 Panthothenate syntheta 60.1 10 0.00022 31.3 3.1 35 21-57 24-58 (283)
85 cd01492 Aos1_SUMO Ubiquitin ac 54.0 1E+02 0.0023 24.0 9.5 66 76-142 75-141 (197)
86 cd01485 E1-1_like Ubiquitin ac 47.7 59 0.0013 25.3 5.6 68 76-144 75-146 (198)
87 PF12112 DUF3579: Protein of u 41.8 24 0.00051 25.0 2.2 61 50-123 7-67 (92)
88 PLN02486 aminoacyl-tRNA ligase 41.8 57 0.0012 28.6 5.1 46 30-80 84-132 (383)
89 COG1519 KdtA 3-deoxy-D-manno-o 41.8 11 0.00024 33.5 0.7 32 21-56 318-349 (419)
90 PF00899 ThiF: ThiF family; I 39.8 1.4E+02 0.003 21.3 6.5 66 76-143 56-124 (135)
91 cd01483 E1_enzyme_family Super 36.3 1.4E+02 0.0031 21.3 5.9 65 76-142 53-120 (143)
92 COG2340 Uncharacterized protei 35.3 24 0.00051 27.9 1.6 24 119-142 79-102 (207)
93 PF09935 DUF2167: Protein of u 33.7 35 0.00076 28.1 2.3 24 120-143 87-110 (239)
94 cd00805 TyrRS_core catalytic c 32.5 2.2E+02 0.0048 23.3 7.0 55 29-83 10-70 (269)
95 PRK13354 tyrosyl-tRNA syntheta 32.4 2.2E+02 0.0048 25.0 7.3 56 29-84 43-104 (410)
96 COG1564 THI80 Thiamine pyropho 31.8 26 0.00055 28.4 1.2 25 23-48 98-122 (212)
97 COG1533 SplB DNA repair photol 30.8 1E+02 0.0023 25.9 4.8 72 37-116 131-205 (297)
98 TIGR03646 YtoQ_fam YtoQ family 28.5 25 0.00054 26.7 0.6 24 124-147 60-83 (144)
99 COG4714 Uncharacterized membra 27.8 48 0.001 27.6 2.2 23 121-143 135-157 (303)
100 PRK15052 D-tagatose-1,6-bispho 27.5 4.5E+02 0.0098 23.6 10.0 99 35-142 21-123 (421)
101 PF11071 DUF2872: Protein of u 26.9 35 0.00076 25.9 1.2 24 124-147 57-80 (141)
102 COG0162 TyrS Tyrosyl-tRNA synt 26.5 1.9E+02 0.004 25.7 5.8 30 29-58 42-73 (401)
103 cd01491 Ube1_repeat1 Ubiquitin 25.2 2.4E+02 0.0051 23.7 6.0 63 75-140 72-134 (286)
104 TIGR03474 incFII_RepA incFII f 24.8 2.8E+02 0.006 23.2 6.1 57 83-142 114-182 (275)
105 PF04263 TPK_catalytic: Thiami 23.8 16 0.00035 26.7 -1.2 25 23-48 91-115 (123)
106 KOG3157 Proline synthetase co- 23.1 1.5E+02 0.0032 24.4 4.2 65 79-144 60-130 (244)
107 KOG2972 Uncharacterized conser 22.6 2.2E+02 0.0048 23.9 5.2 37 90-134 107-143 (276)
108 cd00395 Tyr_Trp_RS_core cataly 22.2 3.6E+02 0.0077 22.2 6.5 28 31-58 11-40 (273)
109 PF07216 LcrG: LcrG protein; 21.8 98 0.0021 21.9 2.5 53 72-139 19-73 (93)
110 COG0528 PyrH Uridylate kinase 21.7 1.7E+02 0.0036 24.2 4.3 36 19-54 123-159 (238)
No 1
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=100.00 E-value=1.1e-41 Score=257.84 Aligned_cols=128 Identities=47% Similarity=0.827 Sum_probs=120.5
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~ 102 (154)
.|++|||||++|.||+.+|++|++++.++++||+++++++++|+.+..++|+++|++|++.|++.+.|...+++.+|.|+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~~~~~i~~i~d~ 80 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPTLKYEIVPIDDP 80 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Confidence 37899999999999999999999998778999999998776665456789999999999999999988889999999999
Q ss_pred CCCcccccccceeeehhhhhccHHHHHHHHHHCCCCceeEEEeeeecC
Q 031699 103 YGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVWVPVLVVP 150 (154)
Q Consensus 103 ~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~~i~~v~~ 150 (154)
|||+.|++++||||||+||++||.+||++|+++||+||+|++|++|.+
T Consensus 81 ~Gpt~~~~~~d~lVVS~ET~~~~~~iN~~R~~~gl~pl~i~~v~~v~~ 128 (143)
T cd02164 81 YGPTGTDPDLEAIVVSPETYPGALKINRKREENGLSPLEIVVVPLVKA 128 (143)
T ss_pred CCCcccCCCCCEEEEcHHHhhhHHHHHHHHHHCCCCceeEEEEEeecc
Confidence 999999999999999999999999999999999999999999999988
No 2
>PLN02388 phosphopantetheine adenylyltransferase
Probab=100.00 E-value=9.5e-41 Score=260.56 Aligned_cols=150 Identities=80% Similarity=1.203 Sum_probs=139.6
Q ss_pred ccccccccccCCCCCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHH
Q 031699 3 MAILDESVVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82 (154)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~ 82 (154)
|.-..|.++..+.++.+.++.+++|||||.+|.||..||++|++++.+.++||+++++++.+|+++..+.|+++|.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~ 80 (177)
T PLN02388 1 MVTVKDSVADSKLSPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVE 80 (177)
T ss_pred CcccccccccccCCCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHH
Confidence 44567888888888889999999999999999999999999999987789999999998766655678999999999999
Q ss_pred HHHHhcCCCceEEEEEccCCCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCceeEEEeeeecCCC
Q 031699 83 AYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVWVPVLVVPSK 152 (154)
Q Consensus 83 ~~l~~~~p~~~v~i~ei~d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~~i~~v~~~~ 152 (154)
.|+..+.|+..+++.+|.|+|||+.+++++||||||+||++||.+||++|+++||+||+|++|++|.++.
T Consensus 81 ~fl~~~~p~~~~~i~~i~D~~Gpt~~~~~~d~LVVS~ET~~g~~~IN~~R~e~Gl~pL~i~~v~~v~~~~ 150 (177)
T PLN02388 81 EYIKSIKPELVVQAEPIIDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRAERGLSQLKIEVVDIVPEES 150 (177)
T ss_pred HHHHHcCCCceEEEEEecCCCCCcccCCCCCEEEEcHhHhhhHHHHHHHHHHCCCCCeEEEEEEeEecCC
Confidence 9999999989999999999999999999999999999999999999999999999999999999998763
No 3
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=100.00 E-value=1e-40 Score=252.65 Aligned_cols=132 Identities=41% Similarity=0.739 Sum_probs=124.3
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEE
Q 031699 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (154)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~e 98 (154)
.+|+++++|||||++|.||+.||+.|.+.| +++++|+|+|+++++++ .+.+.|++.|.+.|.+|+....+..+. +.+
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G-~~v~IGlTsDe~~k~~k-~~~i~p~~~R~~~l~~fl~~~~~~~~~-iv~ 79 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG-DRVTIGLTSDELAKKKK-KEKIEPYEVRLRNLRNFLESIKADYEE-IVP 79 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC-CeEEEEEccHHHHHHhc-cccCCcHHHHHHHHHHHHHHhcCCcce-EEE
Confidence 468899999999999999999999999999 69999999999998753 578999999999999999999887775 999
Q ss_pred ccCCCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCceeEEEeeeecCCCC
Q 031699 99 ITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVWVPVLVVPSKS 153 (154)
Q Consensus 99 i~d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~~i~~v~~~~~ 153 (154)
|+|+||||.+++++|+||||+||+++|.+||++|.++||+||+|++||+|.+++-
T Consensus 80 i~Dp~G~t~~~~~~e~iVVS~ET~~~Al~IN~~R~~~Gl~pL~I~~i~~v~aedg 134 (158)
T COG1019 80 IDDPYGPTVEDPDFEAIVVSPETYPGALKINEIREKRGLPPLEIIVIDYVLAEDG 134 (158)
T ss_pred ecCCCCCCCCcCceeEEEEccccchhHHHHHHHHHHCCCCCeEEEEEehhhhhcC
Confidence 9999999999999999999999999999999999999999999999999988764
No 4
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=100.00 E-value=3.7e-39 Score=260.52 Aligned_cols=138 Identities=51% Similarity=0.877 Sum_probs=133.3
Q ss_pred CCCCCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 031699 13 SNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPEL 92 (154)
Q Consensus 13 ~~~~~~~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~ 92 (154)
.+.++.++|..+.+|||||++|.||+.||..|++++.++++|||++++++++|..++.++|+++|.+.|..|+..+.|++
T Consensus 134 e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IKp~l 213 (293)
T KOG3351|consen 134 EKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIKPDL 213 (293)
T ss_pred ccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcCCCc
Confidence 46667789999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred eEEEEEccCCCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCceeEEEeeeecC
Q 031699 93 VVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVWVPVLVVP 150 (154)
Q Consensus 93 ~v~i~ei~d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~~i~~v~~ 150 (154)
.++..+|.|||||+.++++++|||||+||+.||..||..|.|+||++|+|++|.++..
T Consensus 214 ~~~~vpi~Dp~GPt~~d~elE~lVVS~ET~~Ga~aVNr~R~E~glseLai~vVell~~ 271 (293)
T KOG3351|consen 214 NVRVVPIHDPFGPTITDPELEALVVSEETKTGATAVNRKRVERGLSELAIYVVELLYD 271 (293)
T ss_pred eEEEEecccCCCCCccCCcceEEEEeeccccchhhhhHHHHHcCCchheEEEEeeccC
Confidence 9999999999999999999999999999999999999999999999999999999976
No 5
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=100.00 E-value=8e-36 Score=228.04 Aligned_cols=129 Identities=36% Similarity=0.669 Sum_probs=119.0
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEcc
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~ 100 (154)
|+.|++||||||+|.||+.+|++|++++ ++|+||++++++++.++. .+++|+++|.+|++.|++.+.|...+++.++.
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~-d~livgi~~d~~~~~~K~-~~i~~~e~R~~~v~~~~~~~~~~~~~~i~~i~ 78 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG-KRVTIGLTSDEFAKSYKK-HKVRPYEVRLKNLKKFLKAVEYDREYEIVKID 78 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC-CEEEEEEcCCccccccCC-CCCCCHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 4679999999999999999999999998 799999999987754332 68899999999999999998888899999999
Q ss_pred CCCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCceeEEEeeeecCCC
Q 031699 101 DPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVWVPVLVVPSK 152 (154)
Q Consensus 101 d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~~i~~v~~~~ 152 (154)
|+|||+.+.+ +|+||+|+||+.++.+||+.|+++|++||+|++||++.+++
T Consensus 79 d~~gp~~~~~-~d~ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~~~ 129 (153)
T PRK00777 79 DPYGPALEDD-FDAIVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLAED 129 (153)
T ss_pred ccCCCccccC-CCEEEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeecCC
Confidence 9999999875 99999999999999999999999999999999999998765
No 6
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=100.00 E-value=5.8e-34 Score=239.78 Aligned_cols=126 Identities=33% Similarity=0.569 Sum_probs=115.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Q 031699 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (154)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d 101 (154)
++|++|||||++|.||+.||++|++++ ++|+||||+|+++.+++ ..+ +|+++|.++|+.||+... ..+.+.+|+|
T Consensus 1 ~~V~vgGTFD~lH~GH~~lL~~A~~~g-d~LiVgvt~D~~~~~~k-~~~-~~~e~R~~~v~~fl~~~~--~~~~i~~i~D 75 (322)
T PRK01170 1 MITVVGGTFSKLHKGHKALLKKAIETG-DEVVIGLTSDEYVRKNK-VYP-IPYEDRKRKLENFIKKFT--NKFRIRPIDD 75 (322)
T ss_pred CEEEEccccccCChHHHHHHHHHHHcC-CEEEEEEccHHHHHhcC-CCC-CCHHHHHHHHHHHHHhcC--CcEEEEecCC
Confidence 369999999999999999999999988 89999999999886544 345 999999999999998754 4789999999
Q ss_pred CCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCceeEEEeeeecCCC
Q 031699 102 PYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVWVPVLVVPSK 152 (154)
Q Consensus 102 ~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~~i~~v~~~~ 152 (154)
+|||+.+++++|+||||+||..+|.+||++|+++||+||+|++|++|.+++
T Consensus 76 ~~Gpt~~~~~~d~IVVS~ET~~~~~~IN~~R~e~Gl~pleIv~I~~v~~~d 126 (322)
T PRK01170 76 RYGNTLYEEDYEIIVVSPETYQRALKINEIRIKNGLPPLKIVRVPYVLAED 126 (322)
T ss_pred CCCCCcccCCCCEEEEeccccccHHHHHHHHHHCCCCceEEEEEEeEEcCC
Confidence 999999999999999999999999999999999999999999999998865
No 7
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.73 E-value=4.4e-18 Score=135.07 Aligned_cols=91 Identities=24% Similarity=0.364 Sum_probs=78.9
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEE
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~e 98 (154)
++++++|||||||+|.||+.++++|++.. .++|++.++..+..+++ ....|.++|++|++.++++. |.+.++..+
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~---~~~a~~~~R~~Ml~la~~~~-~~~~v~~~e 77 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKK---KELASAEHRLAMLELAIEDN-PRFEVSDRE 77 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCCC---ccCCCHHHHHHHHHHHHhcC-CCcceeHHH
Confidence 57899999999999999999999999986 48999988888765442 45689999999999999997 458889999
Q ss_pred ccCCCCCccccccccee
Q 031699 99 ITDPYGPSIVDENLEAI 115 (154)
Q Consensus 99 i~d~~gps~t~~~l~~l 115 (154)
+ .+-|++||.+|++.+
T Consensus 78 ~-~r~g~sYT~dTl~~~ 93 (197)
T COG1057 78 I-KRGGPSYTIDTLEHL 93 (197)
T ss_pred H-HcCCCcchHHHHHHH
Confidence 8 789999999988754
No 8
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.71 E-value=2.7e-17 Score=134.24 Aligned_cols=92 Identities=25% Similarity=0.362 Sum_probs=75.9
Q ss_pred CCCCcEEEEcccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCce
Q 031699 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK---PELV 93 (154)
Q Consensus 18 ~~~~~~v~~gGtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~---p~~~ 93 (154)
...+++++|||||||+|.||+.++++|.+.. .|+|++.++.++.. | ....+.++|++|++.+++..+ +.+.
T Consensus 19 ~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~--K---~~~~~~~~Rl~M~~lAi~~~~~~~~~~~ 93 (243)
T PRK06973 19 ARPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQ--K---ADVSAAEHRLAMTRAAAASLVLPGVTVR 93 (243)
T ss_pred CCCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCC--C---CCCCCHHHHHHHHHHHHHhccCCCceEE
Confidence 3557799999999999999999999999986 48999999887653 2 235799999999999999753 3577
Q ss_pred EEEEEccCCCCCccccccccee
Q 031699 94 VQTEPITDPYGPSIVDENLEAI 115 (154)
Q Consensus 94 v~i~ei~d~~gps~t~~~l~~l 115 (154)
++..|+ ++-||+||.++++.+
T Consensus 94 v~~~Ei-~~~g~syTidTL~~l 114 (243)
T PRK06973 94 VATDEI-EHAGPTYTVDTLARW 114 (243)
T ss_pred EeHhhh-hCCCCCcHHHHHHHH
Confidence 888888 678999988877665
No 9
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.67 E-value=1.2e-16 Score=126.26 Aligned_cols=90 Identities=26% Similarity=0.344 Sum_probs=74.1
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEE
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~e 98 (154)
++++++|||+|||+|.||+.++++|++.. .+.+++.++..+..+. .....+.++|++|++.+++.. +.+.++.+|
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k~---~~~~~~~~~R~~m~~~a~~~~-~~~~v~~~E 78 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKP---QKPLAPLEHRLAMLELAIADN-PRFSVSDIE 78 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCC---CCCCCCHHHHHHHHHHHhcCC-CceEEeHHH
Confidence 46799999999999999999999999875 3788888887765432 234689999999999999997 568888888
Q ss_pred ccCCCCCcccccccce
Q 031699 99 ITDPYGPSIVDENLEA 114 (154)
Q Consensus 99 i~d~~gps~t~~~l~~ 114 (154)
+ +.-|++||.++++.
T Consensus 79 ~-~~~~~syT~~tl~~ 93 (203)
T PRK00071 79 L-ERPGPSYTIDTLRE 93 (203)
T ss_pred H-hCCCCCCHHHHHHH
Confidence 8 66799999887754
No 10
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.66 E-value=2.9e-16 Score=120.34 Aligned_cols=69 Identities=22% Similarity=0.425 Sum_probs=58.2
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTE 97 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ 97 (154)
+++|++||||||+|.||+.++++|++++ |+|++++++++ .| .+..++++|++|++.+++.. |.+.++..
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~~~-~~v~v~~~ 69 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF-DEVIVAVAINP---SK---KPLFSLEERVELIREATAHL-PNVEVVSF 69 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHcCC-CCEEEecC
Confidence 4689999999999999999999999998 89999998764 23 35799999999999999987 44555443
No 11
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.66 E-value=2.1e-16 Score=122.94 Aligned_cols=88 Identities=14% Similarity=0.135 Sum_probs=68.9
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcC-CCceEEEEEc
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPI 99 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~-p~~~v~i~ei 99 (154)
+++++|||||||+|.||+.+++++ . ..|+|++.++.... .+ + ...++++|++|++.++++.. |.+.++.+|+
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~-~~d~v~~vP~~~~~--~~--k-~~~~~~~R~~M~~~ai~~~~~~~~~v~~~E~ 74 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-S-HFDLVLLVPSIAHA--WG--K-TMLDYETRCQLVDAFIQDLGLSNVQRSDIEQ 74 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-h-cCCEEEEEECCCCc--cc--C-CCCCHHHHHHHHHHHHhccCCCceEEehHHh
Confidence 468999999999999999999985 3 44899999877322 12 1 45799999999999999873 6788888887
Q ss_pred cC--CCCCccccccccee
Q 031699 100 TD--PYGPSIVDENLEAI 115 (154)
Q Consensus 100 ~d--~~gps~t~~~l~~l 115 (154)
.. .-+|+||.++++.+
T Consensus 75 ~~~~~~~~~yT~~tl~~l 92 (174)
T PRK08887 75 ELYAPDESVTTYALLTRL 92 (174)
T ss_pred hhccCCCCcchHHHHHHH
Confidence 32 26788888777654
No 12
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.65 E-value=1.3e-16 Score=125.29 Aligned_cols=86 Identities=22% Similarity=0.362 Sum_probs=71.9
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCCC
Q 031699 25 VLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPY 103 (154)
Q Consensus 25 ~~gGtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~~ 103 (154)
+|||||||+|.||+.++++|++.. .+++++.++..+..+.+ ....++++|++|++.+++.. |.+.++..|+ +.-
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k~~---~~~~~~~~R~~m~~~a~~~~-~~~~v~~~E~-~~~ 75 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKT---YEAASSHHRLAMLKLAIEDN-PKFEVDDFEI-KRG 75 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhcC-CCEEEeHHHH-hCC
Confidence 589999999999999999999986 37899888887755432 23479999999999999987 6788888888 778
Q ss_pred CCccccccccee
Q 031699 104 GPSIVDENLEAI 115 (154)
Q Consensus 104 gps~t~~~l~~l 115 (154)
||+||.++++.+
T Consensus 76 ~~syT~~tl~~l 87 (193)
T TIGR00482 76 GPSYTIDTLKHL 87 (193)
T ss_pred CCCCHHHHHHHH
Confidence 999998887765
No 13
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.65 E-value=3.6e-16 Score=119.98 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=66.9
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~ 102 (154)
++++||+|||+|.||+.++++|++++ |+|+|++++.+..+.+ ...++.++|++|++.++++. +.+.++..++.|.
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~-d~v~vi~~~~~~~~~~---~~~~~~~~R~~mi~~a~~~~-~~~~v~~~~~~d~ 75 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV-DELLIIVGSDDTRDDA---RTGLPLEKRLRWLREIFPDQ-ENIVVHTLNEPDI 75 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCC-CCEEEEeCCCCCC
Confidence 47999999999999999999999998 8999999988755443 33589999999999999886 4688888888664
Q ss_pred -CCCccc
Q 031699 103 -YGPSIV 108 (154)
Q Consensus 103 -~gps~t 108 (154)
+.|..|
T Consensus 76 ~~~~~~w 82 (158)
T cd02167 76 PEYPNGW 82 (158)
T ss_pred CCCchhH
Confidence 455555
No 14
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.65 E-value=1.3e-15 Score=115.21 Aligned_cols=67 Identities=30% Similarity=0.472 Sum_probs=57.0
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEE
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ 95 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~ 95 (154)
|+++++||||||+|.||+.++++|.+++ |+|+|+++.++ .| .+..|+++|++|++++++.. |.+++.
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~-D~v~v~v~~np---~K---~~~~s~e~R~~~l~~~~~~~-~~v~v~ 67 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF-DKVYVVVSINP---DK---SNASDLDSRFKNVKNKLKDF-KNVEVL 67 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC-CEEEEEeccCC---CC---CCCCCHHHHHHHHHHHHcCC-CCcEEe
Confidence 3689999999999999999999999998 89999998764 33 35689999999999999987 445443
No 15
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.64 E-value=3e-16 Score=133.10 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=74.5
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEc
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei 99 (154)
|++++|||||||+|.||+.++++|.+.. .|+|++.++..+.. |+ .....+.++|++|++.+++.. |.+.++.+|+
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~--K~-~~~~~~~~~R~~m~~~a~~~~-~~~~v~~~E~ 76 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPF--KK-KQKASNGEHRLNMLKLALKNL-PKMEVSDFEI 76 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCC--CC-CCCCCCHHHHHHHHHHHHhhC-CCeEEeHHHH
Confidence 4689999999999999999999999874 48999999877754 32 234466699999999999997 6788888998
Q ss_pred cCCCCCccccccccee
Q 031699 100 TDPYGPSIVDENLEAI 115 (154)
Q Consensus 100 ~d~~gps~t~~~l~~l 115 (154)
++.||+||.++++.+
T Consensus 77 -~~~~~syt~~tl~~l 91 (342)
T PRK07152 77 -KRQNVSYTIDTIKYF 91 (342)
T ss_pred -hCCCCCcHHHHHHHH
Confidence 678999998877654
No 16
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.64 E-value=3.9e-16 Score=119.10 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=60.8
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~ 102 (154)
+|++||||||+|.||+.++++|++.+ |+|+++++.++ .| ....|+++|++|++.++.+. |.+.++..+
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~-d~v~~~~~~~p---~k---~~~~~~~~R~~m~~~a~~~~-~~~~v~~~e---- 68 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF-DEVIVAVAKNP---SK---KPLFSLEERVELIKDATKHL-PNVRVDVFD---- 68 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC-CEEEEEEcCCC---CC---CCCcCHHHHHHHHHHHHhhC-CCeEEcCcc----
Confidence 58999999999999999999999998 89999998432 33 25689999999999999875 555554444
Q ss_pred CCCcccccccce
Q 031699 103 YGPSIVDENLEA 114 (154)
Q Consensus 103 ~gps~t~~~l~~ 114 (154)
+||.++++.
T Consensus 69 ---~yt~dt~~~ 77 (155)
T TIGR01510 69 ---GLLVDYAKE 77 (155)
T ss_pred ---chHHHHHHH
Confidence 466666544
No 17
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.64 E-value=8.1e-16 Score=118.42 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=72.1
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcC-CCceEEEEEccC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPITD 101 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~-p~~~v~i~ei~d 101 (154)
+++|||+|||+|.||+.++++|++++ |+|+|++++.....++ ...+++++|++|++.++..++ +.-++.+.++.|
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~-d~l~v~v~s~~~~~~~---~~~~~~~~R~~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV-DELIIGIGSAQESHTL---ENPFTAGERVLMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHHHhcCCCcCeEEEEecCC
Confidence 37999999999999999999999998 8999999665443222 223788999999999998863 345788899877
Q ss_pred CCCCcccccc-------cceeeehh
Q 031699 102 PYGPSIVDEN-------LEAIVVSK 119 (154)
Q Consensus 102 ~~gps~t~~~-------l~~lVvs~ 119 (154)
.+....|... +++++++.
T Consensus 77 ~~~~~~w~~~v~~~vp~~div~~g~ 101 (163)
T cd02166 77 IERNSLWVSYVESLTPPFDVVYSGN 101 (163)
T ss_pred CCchHHHHHHHHHHCCCCCEEEECc
Confidence 7766766555 46666654
No 18
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.63 E-value=8.1e-16 Score=120.54 Aligned_cols=90 Identities=20% Similarity=0.260 Sum_probs=72.4
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCC-CceEEEEEccC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKP-ELVVQTEPITD 101 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p-~~~v~i~ei~d 101 (154)
.++|||+|||+|.||+.++++|++.+ ++|+|++++....+.++ ..+++++|++|++.++.+.+- .-++.+.+|.|
T Consensus 1 ~~l~~GrF~P~H~GHl~~i~~a~~~~-~~vii~i~s~~~~~~~~---~p~~~~eR~~mi~~~~~~~~~~~~rv~i~pi~D 76 (181)
T cd02168 1 YLVYIGRFQPFHNGHLAVVLIALEKA-KKVIILIGSARTARNIK---NPWTSEEREVMIEAALSDAGADLARVHFRPLRD 76 (181)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC-CeEEEEeCCCCCCCCCC---CCcCHHHHHHHHHHHHhccCCCcceEEEEecCC
Confidence 37899999999999999999999998 69999998775544443 348999999999999987521 24789999988
Q ss_pred C-CCCcccccccceee
Q 031699 102 P-YGPSIVDENLEAIV 116 (154)
Q Consensus 102 ~-~gps~t~~~l~~lV 116 (154)
. |..+.|...++..|
T Consensus 77 ~~~~~~~W~~~v~~~v 92 (181)
T cd02168 77 HLYSDNLWLAEVQQQV 92 (181)
T ss_pred CCCChHHHHHHHHHhC
Confidence 7 67888876665444
No 19
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.62 E-value=7.6e-16 Score=117.33 Aligned_cols=92 Identities=21% Similarity=0.314 Sum_probs=68.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~ 102 (154)
+++|||||||+|.||+.++++|.+.+ |+|++++++++ .| .+..+.++|++|++.+++.. |.+.++..+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~~~-~~~~v~~~e---- 68 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF-DEVIVAVAVNP---SK---KPLFSLEERVELIREATKHL-PNVEVDGFD---- 68 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHHcCC-CCEEecCCc----
Confidence 48999999999999999999999998 89999998754 23 35689999999999999986 444444432
Q ss_pred CCCcccccccce-----eeehhhhhccHHHHH
Q 031699 103 YGPSIVDENLEA-----IVVSKETLPGGLSVN 129 (154)
Q Consensus 103 ~gps~t~~~l~~-----lVvs~Et~~~~~~iN 129 (154)
++|.++++. ++..-.++...+.+.
T Consensus 69 ---s~t~~~l~~l~~~~~i~G~d~~~~~e~~~ 97 (153)
T cd02163 69 ---GLLVDFARKHGANVIVRGLRAVSDFEYEF 97 (153)
T ss_pred ---chHHHHHHHcCCCEEEECCcchhhHHHHH
Confidence 455555443 555555555555544
No 20
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.62 E-value=6.2e-16 Score=121.09 Aligned_cols=87 Identities=25% Similarity=0.362 Sum_probs=71.2
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD 101 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d 101 (154)
++++||||||+|.||+.+++.|.+.+ .++|+++++.++.. |+ ....++++|++|++.+++.. +.+.++..|+ +
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~--k~--~~~~~~~~R~~m~~~~~~~~-~~i~v~~~e~-~ 74 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPH--KP--PKPASFEHRLEMLKLAIEDN-PKFEVSDIEI-K 74 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCC--CC--CCCCCHHHHHHHHHHHHcCC-CCEEEeHHHH-h
Confidence 58999999999999999999999987 37899988776542 32 35689999999999999875 5688888887 5
Q ss_pred CCCCccccccccee
Q 031699 102 PYGPSIVDENLEAI 115 (154)
Q Consensus 102 ~~gps~t~~~l~~l 115 (154)
.-+|++|.++++.+
T Consensus 75 ~~~~~~t~~tl~~l 88 (192)
T cd02165 75 RDGPSYTIDTLEEL 88 (192)
T ss_pred CCCCCCHHHHHHHH
Confidence 67888987776554
No 21
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.61 E-value=2.1e-15 Score=128.11 Aligned_cols=91 Identities=21% Similarity=0.370 Sum_probs=76.3
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEE
Q 031699 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP 98 (154)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~e 98 (154)
.+|++++|||+|||+|.||+.++++|++.+ |+|+|++++....+.++ . .+++++|++|++.++..++ ..++.+.+
T Consensus 4 ~~~~~~~~~G~F~P~H~GHl~~i~~a~~~~-d~l~v~i~s~~~~~~~~--~-~~~~~~R~~mi~~~~~~~~-~~r~~~~p 78 (340)
T PRK05379 4 RRYDYLVFIGRFQPFHNGHLAVIREALSRA-KKVIVLIGSADLARSIK--N-PFSFEERAQMIRAALAGID-LARVTIRP 78 (340)
T ss_pred ccceEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEEccCCCCCcCC--C-CCCHHHHHHHHHHHhhcCC-CceEEEEE
Confidence 368999999999999999999999999998 89999998765444443 2 3899999999999999764 46899999
Q ss_pred ccCC-CCCcccccccce
Q 031699 99 ITDP-YGPSIVDENLEA 114 (154)
Q Consensus 99 i~d~-~gps~t~~~l~~ 114 (154)
|.|. |.++.|...++.
T Consensus 79 i~d~~~~~~~W~~~v~~ 95 (340)
T PRK05379 79 LRDSLYNDSLWLAEVQA 95 (340)
T ss_pred CCCCCcChHHHHHHHHH
Confidence 9887 778888766554
No 22
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.61 E-value=2.4e-15 Score=98.27 Aligned_cols=63 Identities=30% Similarity=0.444 Sum_probs=52.5
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHh
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKS 87 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~ 87 (154)
+++++|+|||+|.||+.++++|++++ +.++++++++...+..+. .++.+.++|.+|++.+...
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~-~~~vv~i~~~~~~~~~~~-~~~~~~~~R~~~~~~~~~~ 63 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELF-DELIVGVGSDQFVNPLKG-EPVFSLEERLEMLKALKYV 63 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhC-CEEEEEECchHhccccCC-CCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999999999 488899987655443332 3789999999999988654
No 23
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.60 E-value=2.1e-15 Score=116.77 Aligned_cols=104 Identities=21% Similarity=0.243 Sum_probs=76.0
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~ 102 (154)
.+++||+|||+|.||+.++++|++++ |+|+|+++++... .|. ...++.++|++|++.++...+ ...+.++++.|.
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~-D~lii~i~s~~~~-~k~--~~p~~~~eR~~mi~~al~~~~-~~~~~~vP~~d~ 75 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV-DELIIGIGSAQES-HTL--ENPFTAGERILMITQSLKEVG-DLTYYIIPIEDI 75 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCCCC-CCC--CCCCCHHHHHHHHHHHHhcCC-CceEEEEecCCc
Confidence 37999999999999999999999997 8999998766542 222 233677999999999998874 567888888766
Q ss_pred CCCccccc-------ccceeeehhhhhccHHHHHHHHHHCCC
Q 031699 103 YGPSIVDE-------NLEAIVVSKETLPGGLSVNKKRADRGL 137 (154)
Q Consensus 103 ~gps~t~~-------~l~~lVvs~Et~~~~~~iN~~R~~~gl 137 (154)
+-...|.. .+|+++.++ ..+..+=.+.|+
T Consensus 76 ~~~~~w~~~v~~~~p~~D~vf~~~------~~~~~~f~e~g~ 111 (165)
T TIGR01527 76 ERNSIWVSYVESMTPPFDVVYSNN------PLVRRLFKEAGY 111 (165)
T ss_pred cHHHHHHHHHHHhCCCCCEEEECC------HHHHHHHHHcCC
Confidence 55555544 457766663 334444456663
No 24
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.60 E-value=4.5e-16 Score=114.74 Aligned_cols=101 Identities=24% Similarity=0.256 Sum_probs=67.6
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHhcC-cEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEE--------
Q 031699 25 VLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ-------- 95 (154)
Q Consensus 25 ~~gGtFDplH~GH~~ll~~A~~~~~~-~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~-------- 95 (154)
+|||||||+|.||+.++++|++.+.. .+++.+++.+..+.+ .+..|+++|++|++.++..... +.++
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~~~-i~v~~~e~~~~~ 76 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK---KPIFSFEERLEMLRAAFKDDPN-IEVDDWELEQDK 76 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT---SSSSTHHHHHHHHHHHHTTCTT-EEEEEEHHHSSH
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc---cccCcHHHHHHHHHHHHhhcCC-ccccchhHHhHh
Confidence 68999999999999999999999842 244444554433222 3679999999999999998752 3333
Q ss_pred ---------EEEccC-------CCCCcccccccceeeehhhhhccHHHHH
Q 031699 96 ---------TEPITD-------PYGPSIVDENLEAIVVSKETLPGGLSVN 129 (154)
Q Consensus 96 ---------i~ei~d-------~~gps~t~~~l~~lVvs~Et~~~~~~iN 129 (154)
++.-.| .+++......++.+|++.+.......++
T Consensus 77 ~~~~~~~~~~v~g~D~~~~~~~~~~~~~~~~~~~~~v~~r~~~~~~~~~~ 126 (157)
T PF01467_consen 77 KKYPDVKIYFVIGADNLRNFPKWRDWQEILKEVNIIVVSRGGDDPIETIS 126 (157)
T ss_dssp HHSTSSCEEEEEECTHHEEEEESTTHHHHHHHHHEEEEEHHHTTTHEEEE
T ss_pred hhccccccceeccCCceeeecCCCcHHHHHHhCCEEEEEcCCCCccchhh
Confidence 444444 3445556677888999988766654443
No 25
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.60 E-value=2.9e-15 Score=118.84 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=80.3
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEc
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei 99 (154)
+|+.+++.|.|+|+|.||+.++++|++.+ ++||||+++.......+++ +++.||..|++..|.+.+ ..++.++++
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~-devII~IGSA~~s~t~~NP---FTa~ER~~MI~~aL~e~~-~~rv~~ipi 77 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQS-RYVILALGSAQMERNIKNP---FLAIEREQMILSNFSLDE-QKRIRFVHV 77 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhC-CEEEEEEccCCCCCCCCCC---CCHHHHHHHHHHhcchhh-cceEEEEec
Confidence 58999999999999999999999999998 8999999886654444433 899999999999997653 468999999
Q ss_pred cCCCCCcccccccceee
Q 031699 100 TDPYGPSIVDENLEAIV 116 (154)
Q Consensus 100 ~d~~gps~t~~~l~~lV 116 (154)
.|.|..+.|...++.+|
T Consensus 78 ~D~~~~~~Wv~~V~~~v 94 (196)
T PRK13793 78 VDVYNDEKWVKQVKSLV 94 (196)
T ss_pred CCccchhHHHHHHHHhc
Confidence 99999999999998888
No 26
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.60 E-value=1.3e-14 Score=106.28 Aligned_cols=120 Identities=17% Similarity=0.195 Sum_probs=89.3
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDP 102 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~ 102 (154)
+++++|+|||+|.||+.++++|++.+.+.++|++.+++....+ .....++++|++|++.+.+.. ..+...+.. .
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~R~~~l~~~~~~~---~~v~~~~~~-~ 74 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKR--NKDPFSLHERVEMLKEILKDR---LKVVPVDFP-E 74 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcc--cccCCCHHHHHHHHHHhccCC---cEEEEEecC-h
Confidence 5899999999999999999999998756899999887654321 346789999999999988722 244555542 2
Q ss_pred CCCccc---------ccccceeeehhhhhccHHHHHHHHHHCCCCceeEEEeeee
Q 031699 103 YGPSIV---------DENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVWVPVLV 148 (154)
Q Consensus 103 ~gps~t---------~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~~i~~v 148 (154)
..+.++ ....+.+|+..+...+....++.+.+.....++++.++-.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~v~G~d~~~~~~~~~~~~~~~~~~~~~vv~~~~~ 129 (143)
T cd02039 75 VKILLAVVFILKILLKVGPDKVVVGEDFAFGKNASYNKDLKELFLDIEIVEVPRV 129 (143)
T ss_pred hhccCHHHHHHHHHHHcCCcEEEECCccccCCchhhhHHHHHhCCceEEEeeEec
Confidence 222222 1346789999999999888876666666777888888765
No 27
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.56 E-value=7.1e-15 Score=112.31 Aligned_cols=67 Identities=33% Similarity=0.451 Sum_probs=56.1
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCcccc-CCCCCCCCCHHHHHHHHHHHHHhcC
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVEAYIKSIK 89 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~-k~~~~~i~~~~~R~~~v~~~l~~~~ 89 (154)
.+++++.|+||++|.||+.+|++|+++| ++|+|||++|+.+.. |+...|++++++|.++++. +..++
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg-d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~-~~~Vd 69 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG-DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLA-CRYVD 69 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC-CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHh-cCCCC
Confidence 3689999999999999999999999998 899999998876643 4334689999999999944 55543
No 28
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.55 E-value=1.5e-14 Score=112.65 Aligned_cols=86 Identities=19% Similarity=0.163 Sum_probs=64.7
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcC-CCceEEEEEccC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK-PELVVQTEPITD 101 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~-p~~~v~i~ei~d 101 (154)
+++|||+|||+|.||+.++++|++.+ |+|+|++++.....++ ...++.++|++|++.++.... ..-++.+.++.|
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~-d~v~v~i~s~~~~~~~---~~p~~~~~R~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV-DELIIGIGSAQESHTL---KNPFTAGERILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC-CEEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHHhcCCCCcceeeEecCCC
Confidence 69999999999999999999999976 8999998654322222 223789999999999997653 123678888877
Q ss_pred CCCCccccccc
Q 031699 102 PYGPSIVDENL 112 (154)
Q Consensus 102 ~~gps~t~~~l 112 (154)
...+..|...+
T Consensus 78 ~~~~~~w~~~v 88 (174)
T PRK01153 78 IEFNSIWVSHV 88 (174)
T ss_pred cchHHHHHHHH
Confidence 65566555554
No 29
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.51 E-value=9.4e-15 Score=110.21 Aligned_cols=67 Identities=31% Similarity=0.517 Sum_probs=53.0
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCcccc-CCCCCCCCCHHHHHHHHHH--HHHhcCC
Q 031699 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVEA--YIKSIKP 90 (154)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~-k~~~~~i~~~~~R~~~v~~--~l~~~~p 90 (154)
..|+++||||.+|+||..+|++|+++| +.++|.+..++...+ |+ +.|++++++|.++++. ++.++-+
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lG-d~liVv~a~de~~~~~~k-~~pi~~~~qR~evl~s~ryVD~vi~ 71 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKK-RKPIMPEEQRAEVLESLRYVDEVIL 71 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhC-CeEEEEEeccHHHHHhcC-CCCCCCHHHHHHHHHcCcchheeee
Confidence 359999999999999999999999999 666666655554443 33 5799999999999986 5665533
No 30
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=99.50 E-value=3.4e-14 Score=115.25 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHh-cCcE-EEE--E--cCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 031699 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRI-VVG--V--CDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPEL 92 (154)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~A~~~~-~~~v-iVg--v--t~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~ 92 (154)
...-+.++||||||+|.||+.+++.|.+.. .+.+ +|+ + +.++. .| ....+.++|++|++.+++.. |.+
T Consensus 20 ~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~--~k---~~~~~~~~Rl~Ml~lai~~~-~~~ 93 (236)
T PLN02945 20 RTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAY--KK---KGLASAEHRIQMCQLACEDS-DFI 93 (236)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccc--cc---CCCCCHHHHHHHHHHHhcCC-CCe
Confidence 446689999999999999999999988875 2443 222 2 22221 22 24579999999999999986 568
Q ss_pred eEEEEEccCCCCCccccccccee
Q 031699 93 VVQTEPITDPYGPSIVDENLEAI 115 (154)
Q Consensus 93 ~v~i~ei~d~~gps~t~~~l~~l 115 (154)
.++.+|+ ..-|++||.++++.+
T Consensus 94 ~V~~~E~-~~~~~syT~dtL~~l 115 (236)
T PLN02945 94 MVDPWEA-RQSTYQRTLTVLARV 115 (236)
T ss_pred EecHHHh-CCCCCccHHHHHHHH
Confidence 8888998 678899998888554
No 31
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.50 E-value=4.2e-14 Score=107.87 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=53.3
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhc-CcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~A~~~~~-~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
..|+++|+||++|.||+.+|++|+++|. ++|+|||++|+.+...+. .|++++++|.++++..
T Consensus 3 ~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~-~pi~~~~eR~~~l~~~ 65 (150)
T cd02174 3 VRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKG-PPVMTEEERYEAVRHC 65 (150)
T ss_pred eEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCC-CCcCCHHHHHHHHHhc
Confidence 4699999999999999999999999982 589999999887654332 3999999999999964
No 32
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.50 E-value=4e-15 Score=129.38 Aligned_cols=63 Identities=30% Similarity=0.471 Sum_probs=54.8
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHH
Q 031699 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (154)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~ 83 (154)
.+..+|+++||||++|.||+.+|++|+++| ++|+|||++|+.+...| ..|++|+++|.++++.
T Consensus 51 ~~~~rV~~~G~FDllH~GH~~~L~qAk~lG-d~LIVGV~SDe~i~~~K-g~PV~~~eER~~~v~a 113 (418)
T PLN02406 51 KKPVRVYMDGCFDMMHYGHANALRQARALG-DELVVGVVSDEEIIANK-GPPVTPMHERMIMVSG 113 (418)
T ss_pred CCceEEEEcCeeCCCCHHHHHHHHHHHHhC-CEEEEEEecChhhhccC-CCCcCCHHHHHHHHHh
Confidence 445679999999999999999999999999 89999999887764322 3599999999999987
No 33
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.48 E-value=1.4e-13 Score=105.30 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=58.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEE
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ 95 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~ 95 (154)
+++++|.|||||+++||+.++++|..++ |+|+|+|..++ .| .+.++++||.+|+++.+..+ |.+++.
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F-d~viVaV~~np---~K---~plFsleER~~l~~~~~~~l-~nV~V~ 68 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF-DEVIVAVAINP---SK---KPLFSLEERVELIREATKHL-PNVEVV 68 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc-cEEEEEEEeCC---Cc---CCCcCHHHHHHHHHHHhcCC-CceEEE
Confidence 6799999999999999999999999999 89999998876 33 57899999999999999887 444443
No 34
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=99.43 E-value=3.8e-13 Score=108.59 Aligned_cols=86 Identities=10% Similarity=0.066 Sum_probs=65.4
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-Cc-E-E----EEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEE
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DR-I-V----VGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQ 95 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~-~~-v-i----Vgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~ 95 (154)
+.+|||||||+|.||+.++++|.+... +. + + +.++..+. .| ....+.++|++|++.+++.. |.+.++
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~--~k---~~~~~~~~Rl~Ml~lai~~~-~~~~v~ 75 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAY--GK---KGLASAKHRVAMCRLAVQSS-DWIRVD 75 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCC--CC---CCCCCHHHHHHHHHHHHccC-CCEEEE
Confidence 468999999999999999999998762 33 2 1 12333332 22 34578999999999999987 678999
Q ss_pred EEEccCCCCCccccccccee
Q 031699 96 TEPITDPYGPSIVDENLEAI 115 (154)
Q Consensus 96 i~ei~d~~gps~t~~~l~~l 115 (154)
.+|+ ...|+++|.++++.+
T Consensus 76 ~~E~-~~~~~syT~~TL~~l 94 (225)
T cd09286 76 DWES-LQPEWMRTAKVLRHH 94 (225)
T ss_pred ehhc-cCCccccHHHHHHHH
Confidence 9997 677888987776665
No 35
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.43 E-value=8.2e-13 Score=111.66 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=54.8
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~ 88 (154)
|+++++||||||+|.||+.++++|+.++ |+|+|++++.+..+++ .+..|.++|++|++.+++..
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~-d~v~v~~~~~~~~~~~---~~~~~~~~R~~~l~~~~~~~ 64 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV-DELHIVVGSLFYDSKA---KRPPPVQDRLRWLREIFKYQ 64 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCcCccC---CCCCCHHHHHHHHHHHhccC
Confidence 3589999999999999999999999997 8999999875433222 45689999999999999887
No 36
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.39 E-value=6.8e-13 Score=98.42 Aligned_cols=61 Identities=34% Similarity=0.538 Sum_probs=52.4
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHH
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~ 83 (154)
+++++++|+||++|.||..++++|.+++ +.++|+++.+..+...+ +.++++.++|.++++.
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~l~v~v~~~~~~~~~~-~~~~~~~~eR~~~l~~ 61 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG-DYLIVGVARDETVAKIK-RRPILPEEQRAEVVEA 61 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC-CEEEEEECCcHHHHhcC-CCCCCCHHHHHHHHHc
Confidence 4689999999999999999999999998 78999999887553222 2488999999999997
No 37
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.39 E-value=7.9e-13 Score=97.28 Aligned_cols=62 Identities=29% Similarity=0.459 Sum_probs=52.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
|++++++|+||++|.||..++++|++++ ++++++++.++..+.++ ..++.|+++|.++++.+
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~-~~l~v~v~~d~~~~~~~-~~~~~~~~~R~~~l~~~ 62 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALG-DKLIVAVSTDEFNAGKG-KKAVIPYEQRAEILESI 62 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHhHHhcC-CCCCCCHHHHHHHHHcC
Confidence 5689999999999999999999999998 67999998876544333 46789999999999864
No 38
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.38 E-value=1e-12 Score=112.50 Aligned_cols=68 Identities=28% Similarity=0.397 Sum_probs=56.9
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCcccc-CCCCCCCCCHHHHHHHHHHHHHhc
Q 031699 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVEAYIKSI 88 (154)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~-k~~~~~i~~~~~R~~~v~~~l~~~ 88 (154)
...++|++.|+||++|.||+.+|++|+++| ++|||||++|+.... |+...|+++.++|.+++. .+..+
T Consensus 190 ~~~kiv~~~G~FDl~H~GHi~~L~~A~~lg-d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~-a~~~V 258 (353)
T PTZ00308 190 PGDRIVYVDGSFDLFHIGHIRVLQKARELG-DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVL-SCRYV 258 (353)
T ss_pred CCCeEEEECCccCCCCHHHHHHHHHHHHhC-CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHH-hhCCC
Confidence 345799999999999999999999999998 899999998876543 433468999999999996 55444
No 39
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=2.5e-13 Score=117.22 Aligned_cols=117 Identities=27% Similarity=0.339 Sum_probs=84.8
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCcccc-CCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEE--
Q 031699 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVEAYIKSIKPELVVQTEP-- 98 (154)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~-k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~e-- 98 (154)
++|++.||||.+|.||..+|.+|+.+| |++|||+++|...+. |...+|+.|.++|..++ ..++.+++ -+-+-|
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lg-d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vL-a~L~~VD~--vV~F~edT 408 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARALG-DRLIVGVNSDASVKRLKGESRPINSEEDRAAVL-AALESVDL--VVIFDEDT 408 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhhC-CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHH-hhcccceE--EEEecCCC
Confidence 399999999999999999999999999 899999999988765 55578999999998754 44555442 111110
Q ss_pred ---ccCCCCCc----ccccccceeeehhhhhccHHHHHHHHHHCCCCceeE
Q 031699 99 ---ITDPYGPS----IVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKV 142 (154)
Q Consensus 99 ---i~d~~gps----~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i 142 (154)
+-...-|. .-|...+.+|.|++++..|.++-.+-.+.|.++..|
T Consensus 409 P~~LI~~~~PdilVKGgDy~~~~i~g~~~v~~~GG~v~~i~f~~g~STt~i 459 (467)
T COG2870 409 PEELIEAVKPDILVKGGDYKIEKIVGADIVEAYGGEVLLIPFEEGKSTTKI 459 (467)
T ss_pred HHHHHHHhCcceEEccCCCChhhccchhhhhhcCCeEEEEecccCCcHHHH
Confidence 00011121 235577889999999998888776667777666543
No 40
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.33 E-value=3.7e-12 Score=90.77 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=50.4
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
.+++||+|||+|.||+.++++|.+++ +++++++++++..+.+ ....++++|.+++++.
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~-d~~i~~i~~~~~~~~~---~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA-DQCVVRIDDNPPVKVW---QDPHELEERKESIEED 58 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC-CcEEEEEcCCCccccc---CChHHHHHHHHHHHHH
Confidence 37899999999999999999999998 7899999988765432 3578999999999986
No 41
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.33 E-value=3.8e-12 Score=105.80 Aligned_cols=68 Identities=24% Similarity=0.400 Sum_probs=57.5
Q ss_pred CCCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHH
Q 031699 15 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (154)
Q Consensus 15 ~~~~~~~~~v~~gGtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~ 83 (154)
.++...-.+|++.|+||.+|.||+.+|++|+++| .++|||||++|+...+.+ ..|+++.++|.++|+.
T Consensus 21 ~~~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~K-GrPIm~~~ER~e~V~a 89 (294)
T PLN02413 21 SSPSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYK-GKTVMTEDERYESLRH 89 (294)
T ss_pred CCCCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcC-CCCCCCHHHHHHHHHh
Confidence 3345567789999999999999999999999997 379999999998765433 3589999999999986
No 42
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.31 E-value=7.1e-12 Score=108.79 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=59.7
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccc----cCCCCCCCCCHHHHHHHHHHHHHhcCCCceE
Q 031699 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT----NKQFAELIQPVDERMRNVEAYIKSIKPELVV 94 (154)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~----~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v 94 (154)
.++++++++|+|||+|.||+.++++|+.++ ++|+|+|.+....+ ++.......+.++|.+|+++.+.... ++
T Consensus 50 ~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~-d~l~v~v~~~~~~~~~~~~~~~~~~~~s~~~R~~~l~~~~~~~~---~v 125 (399)
T PRK08099 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQV-DELHIIICYDDERDRKLFEDSAMSQQPTVSDRLRWLLQTFKYQK---NI 125 (399)
T ss_pred hcCcEEEEEEecCCCCHHHHHHHHHHHHHC-CeeEEEEEccCCcchhhcccccccCCCCHHHHHHHHHHHhCCCC---CE
Confidence 467899999999999999999999999998 78998886655321 11112456899999999999998763 45
Q ss_pred EEEEc
Q 031699 95 QTEPI 99 (154)
Q Consensus 95 ~i~ei 99 (154)
.+..+
T Consensus 126 ~v~~~ 130 (399)
T PRK08099 126 KIHAF 130 (399)
T ss_pred EEEec
Confidence 55544
No 43
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.27 E-value=8.7e-12 Score=108.63 Aligned_cols=66 Identities=27% Similarity=0.415 Sum_probs=58.2
Q ss_pred CCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCcccc-CCCCCCCCCHHHHHHHHHH
Q 031699 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVEA 83 (154)
Q Consensus 17 ~~~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~-k~~~~~i~~~~~R~~~v~~ 83 (154)
|....++|+++|+||.+|.||+.+|++|+++| ++|+|||++|+.+.. |+...|+++.++|.++|.+
T Consensus 247 p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG-d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~a 313 (418)
T PLN02406 247 PGPDARIVYIDGAFDLFHAGHVEILRLARALG-DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLA 313 (418)
T ss_pred CCCCCeEEEECCeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhc
Confidence 55678899999999999999999999999998 899999999987653 4335799999999999886
No 44
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.25 E-value=1.1e-11 Score=91.11 Aligned_cols=59 Identities=29% Similarity=0.387 Sum_probs=50.3
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
+++.|+||.+|.||..+|++|.+++ ++++||+++++..+.++ +.++.+.++|.++++..
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~-~~~iv~v~~d~~~~~~~-~~~i~~~eeR~~~l~~~ 59 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG-DYLIVALSTDEFNLQKQ-KKAYHSYEHRKLILETI 59 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC-CEEEEEEechHHHhhcC-CCCCCCHHHHHHHHHcC
Confidence 4678999999999999999999998 78999999988765433 46789999999988753
No 45
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.19 E-value=1.6e-10 Score=90.15 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=85.4
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEc
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei 99 (154)
+++.+++-|.|.|+|.||+.+++.|++.. |.|+|+++++......+++ ++..+|..|+++.|.+..-..++-+.++
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v-DeliI~iGSa~~~~t~~nP---fTagER~~mi~~~L~~~~~~~r~~~~~v 77 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV-DELIIVIGSAQESHTLKNP---FTAGERIPMIRDRLREAGLDLRVYLRPV 77 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC-CEEEEEEccCcccccccCC---CCccchhHHHHHHHHhcCCCceEEEEec
Confidence 57889999999999999999999999998 8999999887654333322 7889999999999987654447888888
Q ss_pred cCCCCCcccccccceeeehhhhh-ccHHHHHHHHHHCCCC
Q 031699 100 TDPYGPSIVDENLEAIVVSKETL-PGGLSVNKKRADRGLS 138 (154)
Q Consensus 100 ~d~~gps~t~~~l~~lVvs~Et~-~~~~~iN~~R~~~gl~ 138 (154)
.|....+.|..-++.++-.-+.. .+-.-|+.+=.+.|.+
T Consensus 78 ~d~~~n~i~v~~v~~~~p~~~~~~~~n~~v~~lf~~~~~~ 117 (172)
T COG1056 78 FDIEYNDIWVAYVEDLVPPFDVVYTWNPWVARLFHEKGEK 117 (172)
T ss_pred CccccchhhHHHHhhcCCCccccCCCCHHHHHHHhhcCce
Confidence 77655556555555555555544 2334466665666554
No 46
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.16 E-value=1.1e-10 Score=99.22 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=52.6
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK 89 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~ 89 (154)
-+++++||+|||+|.||+.++++|+.++ |.++|+|.. ++ ...+|+++|++|+++.+.++.
T Consensus 139 ~~i~~~~g~fdP~t~GH~~li~~A~~~~-d~~~v~v~~-----~~---~~~f~~~~R~~~v~~~~~~~~ 198 (332)
T TIGR00124 139 NKIGSIVMNANPFTNGHRYLIEQAARQC-DWLHLFVVK-----ED---ASLFSYDERFALVKQGIQDLS 198 (332)
T ss_pred CcEEEEEeCcCCCchHHHHHHHHHHHHC-CEEEEEEEe-----CC---CCCCCHHHHHHHHHHHhcCCC
Confidence 4789999999999999999999999999 788888842 22 347999999999999999984
No 47
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.15 E-value=1.2e-10 Score=88.03 Aligned_cols=61 Identities=31% Similarity=0.410 Sum_probs=52.0
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHH
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~ 83 (154)
-+++++.|+||.+|.||..+|++|.+++ +.++|+++.++.+...+ ..+++|.++|.++++.
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~-~~~vv~~~~d~~~~~~~-~~~i~~~~eR~~~l~~ 64 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLG-DILVVSLTSDRYVNKGP-GRPIFPEDLRAEVLAA 64 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhC-CeEEEEEeChHHhccCC-CCCCCCHHHHHHHHHc
Confidence 4579999999999999999999999998 68999998876554332 4689999999999865
No 48
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.15 E-value=6.3e-11 Score=99.44 Aligned_cols=68 Identities=28% Similarity=0.409 Sum_probs=57.7
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCC-CccccCCCCCCCCCHHHHHHHHHH--HHHhcCC
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG-PMLTNKQFAELIQPVDERMRNVEA--YIKSIKP 90 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~-~~~~~k~~~~~i~~~~~R~~~v~~--~l~~~~p 90 (154)
.-..|++.|+||.+|+||-+.|.+|+++| ++|||||.+| ++..+|. .|+++.+||.+|++. |++++-+
T Consensus 7 ~~~rVw~DGCfDm~HyGHanaLrQAkalG-dkLivGVHsDeeI~~nKG--pPV~t~eERy~~v~~ikWVDEVV~ 77 (358)
T KOG2803|consen 7 RPVRVWADGCFDMVHYGHANALRQAKALG-DKLIVGVHSDEEITLNKG--PPVFTDEERYEMVKAIKWVDEVVE 77 (358)
T ss_pred CceeEEeccchhhhhhhhhHHHHHHHHhC-CeEEEEecchHHHHhcCC--CCcccHHHHHHHHhhcchhhhhhc
Confidence 34469999999999999999999999999 8999999655 4445564 799999999999996 7777644
No 49
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.14 E-value=1.2e-10 Score=87.85 Aligned_cols=63 Identities=33% Similarity=0.490 Sum_probs=52.5
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccc-cCCCCCCCCCHHHHHHHHHHH
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~-~k~~~~~i~~~~~R~~~v~~~ 84 (154)
.+++++.|+||.+|.||..+|++|.+.+ +.++|+++.++... .|+...++.+.++|.++++..
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~-~~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~ 74 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALG-DRLVVGVNSDASVKRLKGETRPINPEEDRAEVLAAL 74 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhC-CccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 5689999999999999999999999998 67999999887543 232225799999999988864
No 50
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.14 E-value=9.9e-11 Score=100.33 Aligned_cols=64 Identities=25% Similarity=0.349 Sum_probs=54.7
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
.+..++++.|+||.+|.||..+|++|.++| +.|+||+.++..+...+ ..++++.++|.++++.+
T Consensus 9 ~~~~~v~~~G~FD~vH~GH~~~L~qAk~~g-~~Livgv~~d~~i~~~K-~~pi~~~eeR~~~l~~~ 72 (353)
T PTZ00308 9 PGTIRVWVDGCFDMLHFGHANALRQARALG-DELFVGCHSDEEIMRNK-GPPVMHQEERYEALRAC 72 (353)
T ss_pred CCcEEEEEEeecccCCHHHHHHHHHHHHhC-CEEEEEeCCHHHHhhcC-CCCCCCHHHHHHHHHhc
Confidence 446789999999999999999999999999 78999998887664332 24799999999999964
No 51
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=98.92 E-value=2.1e-09 Score=94.07 Aligned_cols=61 Identities=30% Similarity=0.507 Sum_probs=52.9
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCcccc-CCCCCCCCCHHHHHHHHH
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRNVE 82 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~-k~~~~~i~~~~~R~~~v~ 82 (154)
.+++++.|+||.+|.||+.+|++|.+++ ++++||+++|+.... |+...|++++++|.++++
T Consensus 340 ~~iv~~~G~fD~~H~GH~~~l~~a~~~~-~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~ 401 (473)
T PRK11316 340 EKIVMTNGCFDILHAGHVSYLANARKLG-DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLA 401 (473)
T ss_pred CeEEEEecccccCCHHHHHHHHHHHHhC-CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHH
Confidence 5899999999999999999999999998 789999999876643 333468999999999884
No 52
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.91 E-value=9.7e-09 Score=80.62 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=61.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccC----C-
Q 031699 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITD----P- 102 (154)
Q Consensus 28 GtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d----~- 102 (154)
-+|||+|+||+.++++|++++ +.++|++... + ....++++|++|++.++++. |. +++....| +
T Consensus 6 ~~~DPiH~GHl~i~~~a~~~~-d~~~V~v~p~-----~---~~~~s~e~R~~Mi~~a~~~~-~~--v~v~~~~~~~v~~~ 73 (182)
T smart00764 6 MNANPFTLGHRYLVEQAAAEC-DWVHLFVVSE-----D---ASLFSFDERFALVKKGTKDL-DN--VTVHSGSDYIISRA 73 (182)
T ss_pred ECCCCCCHHHHHHHHHHHHHC-CceEEEEEeC-----C---CCCCCHHHHHHHHHHHhccC-CC--EEEEecCCceeccc
Confidence 489999999999999999998 5566555322 1 23479999999999999876 43 33333222 2
Q ss_pred CCCcccccccceeeehhhhhccHHHHH
Q 031699 103 YGPSIVDENLEAIVVSKETLPGGLSVN 129 (154)
Q Consensus 103 ~gps~t~~~l~~lVvs~Et~~~~~~iN 129 (154)
.-|.|.+.+-+..|++.-.++.-..|.
T Consensus 74 ~~~~~~~~~~~~~~~~~a~lsa~~Fi~ 100 (182)
T smart00764 74 TFPSYFLKEQDVVIKSQTTLDLRIFRK 100 (182)
T ss_pred cChhhhcCchhHHHHHHhcCCHHHHHH
Confidence 456666666666666665555555554
No 53
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.86 E-value=6.2e-09 Score=87.39 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=50.5
Q ss_pred CCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 031699 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSI 88 (154)
Q Consensus 18 ~~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~ 88 (154)
.+..+++..-|+|||+|.||+.++++|++.+ +.+.|.+-.. + .+..|+++|++|++.++++.
T Consensus 111 ~~~~~~~~~~~~FDPiH~GHl~ii~~a~~~~-d~~~V~i~~~-----~---~~~~~~e~R~~ml~~ai~~~ 172 (297)
T cd02169 111 QPGKKIAAIVMNANPFTLGHRYLVEKAAAEN-DWVHLFVVSE-----D---KSLFSFADRFKLVKKGTKHL 172 (297)
T ss_pred cCCCceEEEEecCCCCchHHHHHHHHHHhhC-CeEEEEEEcC-----C---CCCCCHHHHHHHHHHHhCCC
Confidence 4457899999999999999999999999998 5555555321 1 23579999999999999987
No 54
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=98.76 E-value=2.1e-08 Score=77.99 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=44.6
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhc--CcEEEEEcCCCcc----ccCCCCCCCCCHHHHHHHHHHH
Q 031699 24 VVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPML----TNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~A~~~~~--~~viVgvt~~~~~----~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
+++-|+||++|.||..++++|.+++. +...+.++-++.. ..++...++.+.++|.++++..
T Consensus 2 vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l 68 (180)
T cd02064 2 VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESL 68 (180)
T ss_pred EEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHc
Confidence 67889999999999999999999973 2344455544321 1122245789999999999874
No 55
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=98.75 E-value=2e-08 Score=84.53 Aligned_cols=67 Identities=28% Similarity=0.426 Sum_probs=57.0
Q ss_pred CCCCCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCC-CCCCCCHHHHHHHHHH
Q 031699 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQF-AELIQPVDERMRNVEA 83 (154)
Q Consensus 16 ~~~~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~-~~~i~~~~~R~~~v~~ 83 (154)
.|...-+++++.|.||.+|.||+..|+.|..+| +++|||+.+|.....++. ..|+++..||.-.|.+
T Consensus 193 ~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lg-dyLIvGI~~D~~vneykgs~~PiMnl~ER~Lsvla 260 (358)
T KOG2803|consen 193 EPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLG-DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLA 260 (358)
T ss_pred CCCCCCcEEEEcCchhhhccchHHHHHHHHhcc-CceEEEeecCcchhhhccCCCccchHHHHHHHHhh
Confidence 345567899999999999999999999999999 799999988877665443 4689999999977765
No 56
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=98.53 E-value=1.3e-07 Score=79.43 Aligned_cols=66 Identities=23% Similarity=0.405 Sum_probs=55.6
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-CcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHH--HHHhcC
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA--YIKSIK 89 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~-~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~--~l~~~~ 89 (154)
.++..|-||.+|.||..-|.+|+.++. -+|||||++|.+..+ -.+..+++.++|.+.|+. ++.++-
T Consensus 65 RVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk-~KG~TVm~e~ERyE~lrHCryVDEVi 133 (348)
T KOG2804|consen 65 RVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHK-FKGRTVMNENERYEALRHCRYVDEVI 133 (348)
T ss_pred EEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhh-ccCceecChHHHHHHhhhhhhhhhhc
Confidence 589999999999999999999999984 589999999987533 225789999999999985 666654
No 57
>PRK13671 hypothetical protein; Provisional
Probab=98.50 E-value=2.9e-07 Score=77.42 Aligned_cols=54 Identities=13% Similarity=0.252 Sum_probs=44.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 28 GTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 28 GtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
-+|||+|+||+.++++|++.. .|.+++++++++.. |+ ...+.+..+|.+|++..
T Consensus 7 aeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~q--rg-~pa~~~~~~R~~ma~~~ 61 (298)
T PRK13671 7 AEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQ--RG-EIAVASFEKRKKIALKY 61 (298)
T ss_pred eeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCC--CC-CCCCCCHHHHHHHHHHc
Confidence 589999999999999999974 48888888887743 22 23456999999999975
No 58
>PRK07143 hypothetical protein; Provisional
Probab=98.11 E-value=9.2e-06 Score=67.82 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=69.3
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEc
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPI 99 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei 99 (154)
..+.+++-|.||-+|.||..|+++|.+.+ ...+|..-+++..-.+.....+.+.++|.+.++.. .++ .+-+.+.
T Consensus 14 ~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~-~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~--Gvd---~~~~~~F 87 (279)
T PRK07143 14 FEKPTFVLGGFESFHLGHLELFKKAKESN-DEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANL--GFK---NIILLDF 87 (279)
T ss_pred CCCeEEEEccCCcCCHHHHHHHHHHHHCC-CcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHC--CCC---EEEEeCC
Confidence 34578999999999999999999999877 45555554433211111134688999999988653 121 1111111
Q ss_pred cC---CCCCc-cc----ccccceeeehhhhhcc---HHHHHHHHHHCCCCceeEEEeeeecC
Q 031699 100 TD---PYGPS-IV----DENLEAIVVSKETLPG---GLSVNKKRADRGLSQLKVWVPVLVVP 150 (154)
Q Consensus 100 ~d---~~gps-~t----~~~l~~lVvs~Et~~~---~~~iN~~R~~~gl~~l~i~~i~~v~~ 150 (154)
+. ...|. +. .-.++.+||-.+=.=| ..-++.++...+ .+.+||.+..
T Consensus 88 ~~~~a~ls~e~Fi~~ll~l~~~~iVvG~Df~FG~~r~G~~~~L~~~~~----~v~~v~~~~~ 145 (279)
T PRK07143 88 NEELQNLSGNDFIEKLTKNQVSFFVVGKDFRFGKNASWNADDLKEYFP----NVHIVEILKI 145 (279)
T ss_pred CHHHhCCCHHHHHHHHHhcCCCEEEECCCcccCCCCCCCHHHHHHhCC----cEEEeCCEEc
Confidence 10 01111 00 0245667776665422 334667776533 6666666543
No 59
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=98.08 E-value=8.2e-06 Score=68.84 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=45.0
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcC--cEEEEEcCCCccc----cCCCCCCCCCHHHHHHHHHHH
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPMLT----NKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~--~viVgvt~~~~~~----~k~~~~~i~~~~~R~~~v~~~ 84 (154)
.+++-|+||-+|.||..++++|.+.+.. .-.+.+|-++..+ .++...++.+.++|.+.++..
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~ 82 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAEL 82 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHc
Confidence 7899999999999999999999999731 1123455444221 122246789999999988765
No 60
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=97.98 E-value=2e-05 Score=60.42 Aligned_cols=127 Identities=24% Similarity=0.289 Sum_probs=62.0
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhc--CcEEEEEcCCCc----cccCCCCCCCCCHHHHHHHHHHHHHhcCCCce
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPM----LTNKQFAELIQPVDERMRNVEAYIKSIKPELV 93 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~~--~~viVgvt~~~~----~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~ 93 (154)
..+.+++-|.||-+|.||..|+++|.+.+. +...+.+|-++. +........+.+.++|++.++.+ .++ .
T Consensus 4 ~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~--Gvd---~ 78 (157)
T PF06574_consen 4 NKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESL--GVD---Y 78 (157)
T ss_dssp -S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHT--TES---E
T ss_pred CCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHc--CCC---E
Confidence 355789999999999999999999999972 333344444331 11112245589999999998874 111 1
Q ss_pred EEEEEccC---CCCCc-c----c--ccccceeeehhhhhccHH---HHHHHHHHCCCCceeEEEeeeecCC
Q 031699 94 VQTEPITD---PYGPS-I----V--DENLEAIVVSKETLPGGL---SVNKKRADRGLSQLKVWVPVLVVPS 151 (154)
Q Consensus 94 v~i~ei~d---~~gps-~----t--~~~l~~lVvs~Et~~~~~---~iN~~R~~~gl~~l~i~~i~~v~~~ 151 (154)
+-+++.+. ..-|. + - ...+..|||-+.=.=|.. -++.++.-..---.++.+||.+..+
T Consensus 79 ~~~~~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrFG~~~~G~~~~L~~~~~~~g~~v~~v~~~~~~ 149 (157)
T PF06574_consen 79 VIVIPFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRFGKNRSGDVELLKELGKEYGFEVEVVPPVKID 149 (157)
T ss_dssp EEEE-CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EESGGGEEEHHHHHHCTTTT-SEEEEE---EET
T ss_pred EEEecchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccCCCCCCCCHHHHHHhcccCceEEEEECCEEcC
Confidence 11222211 01111 0 1 235567777666433322 2555554432222677777776443
No 61
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.78 E-value=9.6e-05 Score=58.07 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=42.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 031699 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK 89 (154)
Q Consensus 28 GtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~ 89 (154)
-.=||++.||.+|+++|++.+ |.|.|=|-+.. ...+|+++|++||++=+++++
T Consensus 6 MNaNPFT~GH~yLiE~Aa~~~-d~l~vFVV~eD--------~S~Fpf~~R~~LVk~G~~~L~ 58 (182)
T PF08218_consen 6 MNANPFTLGHRYLIEQAAKEC-DWLHVFVVSED--------RSLFPFADRYELVKEGTADLP 58 (182)
T ss_pred EcCCCCccHHHHHHHHHHHhC-CEEEEEEEccc--------cCcCCHHHHHHHHHHHhCcCC
Confidence 355899999999999999998 77776553322 235999999999999988874
No 62
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=97.54 E-value=0.00062 Score=59.25 Aligned_cols=80 Identities=23% Similarity=0.257 Sum_probs=58.5
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHH-hcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CceEEEE
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAEL-ARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKP--ELVVQTE 97 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~-~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p--~~~v~i~ 97 (154)
.+.|+.-=||||+|.||..+++.|++. ..+.|++.+.-.+ .| ....+.+.|.++++.+++...+ .+.+.+.
T Consensus 183 w~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~---~k---~~~~~~~~R~~~~~~~~~~~~~~~~~~l~~~ 256 (383)
T TIGR00339 183 WDTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL---TK---PGDIPAEVRMRAYEVLKEGYPNPERVMLTFL 256 (383)
T ss_pred CCeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC---CC---CCCCCHHHHHHHHHHHHhhCCCCCceEEEec
Confidence 355666689999999999999999997 2377888887663 22 2458999999999999998754 2335555
Q ss_pred EccCC-CCCc
Q 031699 98 PITDP-YGPS 106 (154)
Q Consensus 98 ei~d~-~gps 106 (154)
++.-+ -||+
T Consensus 257 ~~em~~agpr 266 (383)
T TIGR00339 257 PLAMRYAGPR 266 (383)
T ss_pred chHhhcCCcH
Confidence 55333 3565
No 63
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=97.46 E-value=0.0003 Score=59.02 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=40.0
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhc--CcEEEEEcCCCccc---cCCCCCCCCCHHHHHHHHHHH
Q 031699 24 VVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPMLT---NKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~A~~~~~--~~viVgvt~~~~~~---~k~~~~~i~~~~~R~~~v~~~ 84 (154)
+++-|+||-+|.||..|+++|.+.+. +.-.+.+|-++... .+.....+.+.++|.++++..
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~l~~~~~k~~~l~~~ 66 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPALTPLEDKARQLQIK 66 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCCCCCHHHHHHHHHHc
Confidence 36779999999999999999998762 11223344333111 111122388999999988764
No 64
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=97.37 E-value=0.00058 Score=57.79 Aligned_cols=64 Identities=28% Similarity=0.435 Sum_probs=44.3
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhc-CcE-EEEEcCCCccc---cC-CCCCCCCCHHHHHHHHHHH
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRI-VVGVCDGPMLT---NK-QFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~-~~v-iVgvt~~~~~~---~k-~~~~~i~~~~~R~~~v~~~ 84 (154)
...+++-|.||-+|.||..++++|.+.+. +.+ .+.+|-++.-. .+ .....+.+.++|++.++.+
T Consensus 15 ~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~ 84 (304)
T COG0196 15 RGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGY 84 (304)
T ss_pred CCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhc
Confidence 56789999999999999999999997763 222 34445543211 11 1133478999999988865
No 65
>PRK13670 hypothetical protein; Provisional
Probab=97.21 E-value=0.00067 Score=59.11 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=40.6
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhc-CcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~-~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
++-.---|||+|.||..++++|.+.+. +..++.+ +..++.. ..+ .+.+..+|.+++...
T Consensus 3 ~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vm-p~~f~qr-g~p-~i~~~~~R~~~a~~~ 62 (388)
T PRK13670 3 VTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVM-SGNFVQR-GEP-AIVDKWTRAKMALEN 62 (388)
T ss_pred eeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEe-cHHHhCC-CCC-CCCCHHHHHHHHHHc
Confidence 333345799999999999999999864 3344434 4333332 223 388999999998864
No 66
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=97.12 E-value=0.00083 Score=58.52 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=32.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 27 GGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 27 gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
---|||+|+||++.++++++.....++|+|-|..++... ...+.+--.|.+|....
T Consensus 7 IaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFvQRG--EPAi~dKw~RA~~AL~~ 62 (388)
T PF05636_consen 7 IAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFVQRG--EPAIIDKWTRAEMALKN 62 (388)
T ss_dssp E---TT--HHHHHHHHHHH---TSSEEEEEE--TTSBTS--SB-SS-HHHHHHHHHHH
T ss_pred EEeECCccHHHHHHHHHHhccCCCCEEEEEECCCcccCC--CeeeCCHHHHHHHHHHc
Confidence 346999999999999999988654556667666665432 23467888999886653
No 67
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.80 E-value=0.0064 Score=51.51 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=48.6
Q ss_pred CCCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEE-EEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 031699 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIK 89 (154)
Q Consensus 19 ~~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viV-gvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~ 89 (154)
.+-+++..--.=||+..||.+|+++|++.+ |-|-+ .|..|. ..+|+++|++|+++=+..+.
T Consensus 143 ~gkkIgaIVMNANPFTLGH~YLVEqAaaqc-DwlHLFvV~eD~---------S~f~y~~R~~Lv~~G~~~l~ 204 (352)
T COG3053 143 PGKKIGAIVMNANPFTLGHRYLVEQAAAQC-DWLHLFVVKEDS---------SLFPYEDRLDLVKKGTADLP 204 (352)
T ss_pred CCCeeEEEEEeCCCccchhHHHHHHHHhhC-CEEEEEEEeccc---------ccCCHHHHHHHHHHhhccCC
Confidence 356788888899999999999999999998 65543 344443 24899999999999888774
No 68
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=96.67 E-value=0.0025 Score=55.03 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=40.8
Q ss_pred ccCCCCCHHHHHHHHHHHHHh-cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHH
Q 031699 28 GTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 28 GtFDplH~GH~~ll~~A~~~~-~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
--|||+|+||..++++|.+++ +|.++++++.+-.- . +...+.+..+|.+|...-
T Consensus 8 ~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgdf~q-R--gepai~~k~~r~~~aL~~ 62 (358)
T COG1323 8 AEYNPFHNGHQYHINKAREEFKGDEIIAVMSGDFTQ-R--GEPAIGHKWERKKMALEG 62 (358)
T ss_pred eecCcccccHHHHHHHHHHhccCCceEEeeecchhh-c--CCCccccHHHHHhhhhhc
Confidence 469999999999999999965 45666666666532 2 235578999999998764
No 69
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=96.22 E-value=0.0085 Score=48.43 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=63.3
Q ss_pred EEcccCCCCCHHHHHHHHHHHHHh----cCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEcc
Q 031699 25 VLGGTFDRLHDGHRLFLKASAELA----RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPIT 100 (154)
Q Consensus 25 ~~gGtFDplH~GH~~ll~~A~~~~----~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~ 100 (154)
+..|+|+|+.++|+.+.+-|...- .-+|+=|+-+.-.-..|+ +.+.|..+|.+|++++...-+ .+.++.+|-
T Consensus 12 ~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimSPV~DaYkK--KgLipa~hrv~~~ElAt~~Sk-wl~vD~wes- 87 (234)
T KOG3199|consen 12 LACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMSPVGDAYKK--KGLIPAYHRVRMVELATETSK-WLMVDGWES- 87 (234)
T ss_pred EEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEecccchhhhc--cccchhhhHHHHHHhhhcccc-ceecchhhh-
Confidence 445799999999999999998763 235555553322112233 356889999999999988543 466666664
Q ss_pred CCCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCc
Q 031699 101 DPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQ 139 (154)
Q Consensus 101 d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~ 139 (154)
-.+++ ..++++| ..-.++||..|.-.-+.|
T Consensus 88 --lQ~~w-t~T~~vl------rHhqe~~~~kr~~~~~~~ 117 (234)
T KOG3199|consen 88 --LQKEW-TRTVKVL------RHHQEELNRKRGGTELSP 117 (234)
T ss_pred --ccHHH-hhhhHHH------HHHHHHHHHHhccccccc
Confidence 13333 3554443 223456776665333333
No 70
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=95.63 E-value=0.027 Score=47.28 Aligned_cols=57 Identities=26% Similarity=0.386 Sum_probs=39.3
Q ss_pred EEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCc--cccCCCCCCCCCHHHHHHHHHHH
Q 031699 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 24 v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~--~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
|.+-|. +|.||..|+++|.+.+ +.++|.+.-++. .+.........+.++|.++++.+
T Consensus 27 VpTmG~---LH~GH~~LI~~a~~~a-~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 85 (282)
T TIGR00018 27 VPTMGN---LHDGHMSLIDRAVAEN-DVVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLEKL 85 (282)
T ss_pred EECCCc---ccHHHHHHHHHHHHhC-CeEEEEecCChHHhCCccccccCCCCHHHHHHHHHHc
Confidence 446666 9999999999999998 666666644432 11111123457899999988864
No 71
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=95.42 E-value=0.041 Score=46.06 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=40.0
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCc--cccCCCCCCCCCHHHHHHHHHHH
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~--~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
.|.+-|. +|.||..|+++|.+.+ +.++|.+--++. .+.........+.+++++.++..
T Consensus 26 ~V~TmG~---LH~GH~~LI~~a~~~a-~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ll~~~ 85 (277)
T cd00560 26 FVPTMGA---LHEGHLSLVRRARAEN-DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEEA 85 (277)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC-CEEEEEecCChhhcCCcccccccCCCHHHHHHHHHHC
Confidence 3446666 9999999999999998 677776644432 11111123357889999988864
No 72
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=95.28 E-value=0.051 Score=45.50 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=39.6
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCc--cccCCCCCCCCCHHHHHHHHHHH
Q 031699 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~--~~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
+++++- |..-+|.||..|+++|.+.+ +.++|.+.-.+. .+.......+.+.++|.++++.+
T Consensus 23 ~i~~v~-tmG~lH~GH~~Li~~a~~~a-~~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ll~~~ 85 (281)
T PRK00380 23 RIGLVP-TMGALHEGHLSLVREARAEA-DIVVVSIFVNPLQFGPNEDLDRYPRTLEADLALLEAA 85 (281)
T ss_pred eEEEEE-ccCceeHHHHHHHHHHHHhC-CEEEEeCCCCHHHhCCCccccccCCCHHHHHHHHHHc
Confidence 344433 55559999999999999988 555555543332 11111123457899999988864
No 73
>PLN02660 pantoate--beta-alanine ligase
Probab=95.15 E-value=0.052 Score=45.64 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=38.6
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCcc--ccCCCCCCCCCHHHHHHHHHHH
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML--TNKQFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~--~~k~~~~~i~~~~~R~~~v~~~ 84 (154)
.|.+-|. +|.||..|+++|.+.+ +.++|-+--++.- +.........+.++|+++++.+
T Consensus 25 fVpTmG~---LH~GH~~LI~~a~~~a-~~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~~~ 84 (284)
T PLN02660 25 LVPTMGY---LHEGHLSLVRAARARA-DVVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKLAAL 84 (284)
T ss_pred EEEcCch---hhHHHHHHHHHHHHhC-CEEEEEEeCChHHcCCccccccCCCCHHHHHHHHHHc
Confidence 3445565 9999999999999988 5555555433321 1111123457899999988864
No 74
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=93.29 E-value=0.9 Score=36.70 Aligned_cols=72 Identities=25% Similarity=0.303 Sum_probs=46.2
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCc--eEEEEEcc
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPEL--VVQTEPIT 100 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~--~v~i~ei~ 100 (154)
.|+.-=|-||+|.||..+.+.|++.+.+.|+|-+--. .++ ..-.+.+.|.+..+.+++..-|.- .+..++..
T Consensus 22 ~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG----~~k--~~d~~~~~r~~~~~~~~~~y~p~~~v~l~~lp~~ 95 (215)
T PF01747_consen 22 RVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVG----PTK--PGDIPYEVRVRCYEALIDNYFPKNRVLLSPLPLP 95 (215)
T ss_dssp SEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBES----B-S--TTSCCHHHHHHHHHHHHHHCSSTTGEEEEBBESB
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccC----CCC--cCCCCHHHHHHHHHHHHHHhCCCCcEEEeccCch
Confidence 3444456999999999999999999755666654222 222 234899999999999999942333 33444443
No 75
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=92.55 E-value=1.5 Score=37.86 Aligned_cols=73 Identities=25% Similarity=0.242 Sum_probs=51.0
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhc-CcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--ceEEEE
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE--LVVQTE 97 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~-~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~--~~v~i~ 97 (154)
.+.++.-=|-||+|.||..+.+.|++.+. +.|+|-+--.. ++ ..-.+.+-|.+..+.+++...|. +.+.++
T Consensus 156 w~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll~plvG~----~k--~~d~~~~~r~~~~~~l~~~y~~~~~~~l~~l 229 (353)
T cd00517 156 WRRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLLHPLVGW----TK--PGDVPDEVRMRAYEALLEEYYLPERTVLAIL 229 (353)
T ss_pred CCeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEEEeccCC----CC--CCCCCHHHHHHHHHHHHHhCCCCCcEEEEec
Confidence 34555568999999999999999999874 55555443322 11 33489999999999999987533 234444
Q ss_pred Ec
Q 031699 98 PI 99 (154)
Q Consensus 98 ei 99 (154)
+.
T Consensus 230 p~ 231 (353)
T cd00517 230 PL 231 (353)
T ss_pred cc
Confidence 44
No 76
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=92.23 E-value=1.7 Score=38.22 Aligned_cols=64 Identities=25% Similarity=0.324 Sum_probs=46.7
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPE 91 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~ 91 (154)
.+.|+.-=|-||+|.||..|.+.|++.+ +.|++-+--.. ++ ..-.+.+-|.+..+.+++..-|.
T Consensus 186 w~~VvafqTrnP~HraHe~l~~~a~e~~-d~lll~plvG~----~k--~~di~~~~r~~~~~~~~~~y~p~ 249 (391)
T PRK04149 186 WKTVVAFQTRNPPHRAHEYLQKCALEIV-DGLLLNPLVGE----TK--SGDIPAEVRMEAYEALLKNYYPK 249 (391)
T ss_pred CCeEEEeecCCCCchHHHHHHHHHHHhc-CeEEEecCcCC----CC--CCCCCHHHHHHHHHHHHHhcCCC
Confidence 4566667789999999999999999987 55555332222 21 33489999999999999964343
No 77
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=91.98 E-value=1.5 Score=38.37 Aligned_cols=64 Identities=27% Similarity=0.258 Sum_probs=46.8
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKP 90 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p 90 (154)
+-++++.--|+||+|.||-.+-+.|+..+ |-|+|-+--. .++ .--.+.+.|++..+.+++...|
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~v-dgllv~plVG----~tk--~gD~~~e~rm~~ye~l~~~Yyp 245 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKV-DGLLVHPLVG----ATK--PGDIPDEVRMEYYEALLKHYYP 245 (397)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhc-CcEEEEeeec----ccc--CCCchHHHHHHHHHHHHHhCCC
Confidence 56778888999999999999999999998 4344433211 122 2237789999988888887654
No 78
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=91.68 E-value=0.19 Score=42.21 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=24.4
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCC
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG 59 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~ 59 (154)
.+++++ .|---+|.||+.|+++|+..+ +.++|.+=-+
T Consensus 22 ~~igfV-PTMGaLHeGHlsLi~~A~~~~-d~vVVSIFVN 58 (280)
T PF02569_consen 22 KTIGFV-PTMGALHEGHLSLIRRARAEN-DVVVVSIFVN 58 (280)
T ss_dssp SSEEEE-EE-SS--HHHHHHHHHHHHHS-SEEEEEE---
T ss_pred CeEEEE-CCCchhhHHHHHHHHHHHhCC-CEEEEEECcC
Confidence 344443 566678999999999999988 7888877433
No 79
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=88.70 E-value=0.39 Score=43.46 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=37.1
Q ss_pred cEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCC--ccccCCC-CCCCCCHHHHHHHHHH
Q 031699 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQF-AELIQPVDERMRNVEA 83 (154)
Q Consensus 22 ~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~--~~~~k~~-~~~i~~~~~R~~~v~~ 83 (154)
++|+ --|---||.||+.|+++|++.+ |.++|.+=-++ +-++.-. +.| -+++.=+++++.
T Consensus 21 ~ig~-VPTMG~LH~GHlsLi~~A~~~~-d~vVvSIFVNP~QF~~~eD~~~YP-r~~~~D~~~l~~ 82 (512)
T PRK13477 21 TIGF-VPTMGALHQGHLSLIRRARQEN-DVVLVSIFVNPLQFGPNEDLERYP-RTLEADRELCES 82 (512)
T ss_pred cEEE-ECCCcchhHHHHHHHHHHHHhC-CEEEEEEccCcccCCCchhhhhCC-CCHHHHHHHHHh
Confidence 4444 4577789999999999999997 78888773332 2221100 111 455666666665
No 80
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=86.90 E-value=1.1 Score=37.80 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=28.3
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCC
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG 59 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~ 59 (154)
.+++++ =|--.+|.||+.|++.|.+.. |.++|.+=-+
T Consensus 22 k~Vg~V-PTMG~LH~GHlsLVr~A~~~~-d~VVVSIFVN 58 (285)
T COG0414 22 KRVGLV-PTMGNLHEGHLSLVRRAKKEN-DVVVVSIFVN 58 (285)
T ss_pred CEEEEE-cCCcccchHHHHHHHHHhhcC-CeEEEEEEeC
Confidence 444444 466789999999999999988 7888777443
No 81
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=85.99 E-value=7.7 Score=35.55 Aligned_cols=64 Identities=22% Similarity=0.166 Sum_probs=45.9
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKP 90 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p 90 (154)
.+.|+.-=|-||+|.||..+.+.|++.+...|++-+.-. .+ +.--.+++-|.+..+.+++.+.+
T Consensus 186 w~~v~afqtrnP~Hr~He~l~~~a~~~~d~~lll~p~~G----~~--k~~d~~~~~r~~~~~~~~~~~p~ 249 (568)
T PRK05537 186 WRRVVAFQTRNPLHRAHEELTKRAAREVGANLLIHPVVG----MT--KPGDIDHFTRVRCYEALLDKYPP 249 (568)
T ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhcCCeEEEecCCC----CC--CCCCCCHHHHHHHHHHHHHhCCC
Confidence 455666778999999999999999997732443322221 11 13348999999999999999644
No 82
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=79.28 E-value=0.5 Score=41.95 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=25.8
Q ss_pred CCcEEEEcccCCCCCHHHHHHHHHHHHHh
Q 031699 20 SYGAVVLGGTFDRLHDGHRLFLKASAELA 48 (154)
Q Consensus 20 ~~~~v~~gGtFDplH~GH~~ll~~A~~~~ 48 (154)
.-+.++..|+||.+|.||+.+|.+++.-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 35689999999999999999999998765
No 83
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.05 E-value=13 Score=31.85 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEccCCCCCcccccccceeeehhhhhccHHHHHHHHHHCC
Q 031699 75 DERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRG 136 (154)
Q Consensus 75 ~~R~~~v~~~l~~~~p~~~v~i~ei~d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~g 136 (154)
..|.+...+.+++++|-+++++..=.-.-.+..--..+|..|+..++.....+||++.+..+
T Consensus 84 ~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~ 145 (331)
T KOG2014|consen 84 QTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLN 145 (331)
T ss_pred hHHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcC
Confidence 45888888999999997777665421112334334789999999999999999999999888
No 84
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=60.08 E-value=10 Score=31.26 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=27.1
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEEc
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVC 57 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgvt 57 (154)
-+++++ -|--.+|-||..|++++.++. ++.+|.+-
T Consensus 24 ~tIgfV-PTMG~LHeGH~SLvrqs~~~~-~~tVVSIf 58 (283)
T KOG3042|consen 24 ETIGFV-PTMGCLHEGHASLVRQSVKEN-TYTVVSIF 58 (283)
T ss_pred CeEEEe-cccccccccHHHHHHHHHhhC-ceEEEEEE
Confidence 445544 466789999999999999998 67777663
No 85
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=53.97 E-value=1e+02 Score=23.98 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcc-CCCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCceeE
Q 031699 76 ERMRNVEAYIKSIKPELVVQTEPIT-DPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKV 142 (154)
Q Consensus 76 ~R~~~v~~~l~~~~p~~~v~i~ei~-d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i 142 (154)
.|.+.+.+.++.++|..+++...-. +...+.. ....|.+|.+......-..+|+...+.|.|-+.-
T Consensus 75 ~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~-~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 75 NRAEASLERLRALNPRVKVSVDTDDISEKPEEF-FSQFDVVVATELSRAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEecCccccHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3778888899999998877655421 1122222 2577888887777777888999999999765443
No 86
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=47.65 E-value=59 Score=25.34 Aligned_cols=68 Identities=7% Similarity=0.097 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcc-C---CCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCceeEEE
Q 031699 76 ERMRNVEAYIKSIKPELVVQTEPIT-D---PYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVWV 144 (154)
Q Consensus 76 ~R~~~v~~~l~~~~p~~~v~i~ei~-d---~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~~ 144 (154)
.|.+.+.+.++.++|..+++...-. + ...+.+ ....|.+|.+..+...-..+|+...+.|.|-+..-+
T Consensus 75 ~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~-~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~ 146 (198)
T cd01485 75 NRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEY-LQKFTLVIATEENYERTAKVNDVCRKHHIPFISCAT 146 (198)
T ss_pred hHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHH-HhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 4778888999999998877665421 0 011122 246788998888888888899999999976555443
No 87
>PF12112 DUF3579: Protein of unknown function (DUF3579); InterPro: IPR021969 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 98 to 126 amino acids in length. This protein has a conserved FRP sequence motif. ; PDB: 2L9D_A.
Probab=41.80 E-value=24 Score=24.98 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCcccccccceeeehhhhhc
Q 031699 50 DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLP 123 (154)
Q Consensus 50 ~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~~gps~t~~~l~~lVvs~Et~~ 123 (154)
+.+|-|+|.+. |+. .| ..+.||+..+ +..+.|+-++...+. ..|.. .+.++|+||+++-..
T Consensus 7 e~~I~GiT~~G----k~F-RP-SDWaERL~gv---la~F~~~~rl~Ys~~---~~P~~-~~GvkcVvVd~~L~~ 67 (92)
T PF12112_consen 7 EIVIQGITSDG----KTF-RP-SDWAERLCGV---LASFRPDHRLSYSPY---VRPMV-INGVKCVVVDERLRD 67 (92)
T ss_dssp EEEEEEEETTS-----B--S--TTHHHHHHHT---T-EE-SSSSEE--TT---EEE---BTTB--EEEETHHHH
T ss_pred EEEEEeEcCCC----CCc-CC-ccHHHHHHHH---HHccCCCCceEecCc---ccceE-ECCEEEEEEccHhhh
Confidence 57899999865 221 12 6899999875 556666555544333 24444 788999999987643
No 88
>PLN02486 aminoacyl-tRNA ligase
Probab=41.78 E-value=57 Score=28.57 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCCCCHHHHHHHHHHHHHh---cCcEEEEEcCCCccccCCCCCCCCCHHHHHHH
Q 031699 30 FDRLHDGHRLFLKASAELA---RDRIVVGVCDGPMLTNKQFAELIQPVDERMRN 80 (154)
Q Consensus 30 FDplH~GH~~ll~~A~~~~---~~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~ 80 (154)
=+.+|.||+.-+...+.+- .-.++|.++++...-.+ ..++++-.+.
T Consensus 84 g~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~-----~~~~e~i~~~ 132 (383)
T PLN02486 84 SEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWK-----NLSVEESQRL 132 (383)
T ss_pred CccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhc-----CCCHHHHHHH
Confidence 3569999998888777652 24677778875322121 2567776333
No 89
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=41.77 E-value=11 Score=33.49 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=22.9
Q ss_pred CcEEEEcccCCCCCHHHHHHHHHHHHHhcCcEEEEE
Q 031699 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV 56 (154)
Q Consensus 21 ~~~v~~gGtFDplH~GH~~ll~~A~~~~~~~viVgv 56 (154)
-+++++||||++ +-|| ++|+-|.. + --+|.|.
T Consensus 318 adiAFVGGSlv~-~GGH-N~LEpa~~-~-~pvi~Gp 349 (419)
T COG1519 318 ADIAFVGGSLVP-IGGH-NPLEPAAF-G-TPVIFGP 349 (419)
T ss_pred ccEEEECCcccC-CCCC-ChhhHHHc-C-CCEEeCC
Confidence 578999999999 7777 56665553 3 2566665
No 90
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=39.84 E-value=1.4e+02 Score=21.32 Aligned_cols=66 Identities=12% Similarity=0.253 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEccCCCCCc---ccccccceeeehhhhhccHHHHHHHHHHCCCCceeEE
Q 031699 76 ERMRNVEAYIKSIKPELVVQTEPITDPYGPS---IVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKVW 143 (154)
Q Consensus 76 ~R~~~v~~~l~~~~p~~~v~i~ei~d~~gps---~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i~ 143 (154)
.|.+.++..+...+|..++..++- .+.+. ......|.+|..-.+.+.-..+|+.-.+.|.+-+..-
T Consensus 56 ~Ka~~~~~~l~~~np~~~v~~~~~--~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 56 NKAEAAKERLQEINPDVEVEAIPE--KIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp BHHHHHHHHHHHHSTTSEEEEEES--HCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHhcCceeeeeeec--ccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 588999999999999888777664 12111 2234778999888888888899999999998655443
No 91
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=36.33 E-value=1.4e+02 Score=21.34 Aligned_cols=65 Identities=8% Similarity=0.194 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEccCCCCCc---ccccccceeeehhhhhccHHHHHHHHHHCCCCceeE
Q 031699 76 ERMRNVEAYIKSIKPELVVQTEPITDPYGPS---IVDENLEAIVVSKETLPGGLSVNKKRADRGLSQLKV 142 (154)
Q Consensus 76 ~R~~~v~~~l~~~~p~~~v~i~ei~d~~gps---~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i 142 (154)
.|.+.+.+.++...|.++++.... . ..+. ......|.+|.+..+.+.-..+|+...+.|.+-+..
T Consensus 53 ~Ka~~~~~~l~~~~p~v~i~~~~~-~-~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~ 120 (143)
T cd01483 53 PKAEVAARRLNELNPGVNVTAVPE-G-ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDA 120 (143)
T ss_pred hHHHHHHHHHHHHCCCcEEEEEee-e-cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 577888889999888777766654 1 2211 223578899999899888888999999988665543
No 92
>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]
Probab=35.34 E-value=24 Score=27.92 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=18.3
Q ss_pred hhhhccHHHHHHHHHHCCCCceeE
Q 031699 119 KETLPGGLSVNKKRADRGLSQLKV 142 (154)
Q Consensus 119 ~Et~~~~~~iN~~R~~~gl~~l~i 142 (154)
.+...--..+|.+|+.+||+||++
T Consensus 79 ~~~~~~~~~~N~~R~~~~l~~L~~ 102 (207)
T COG2340 79 QFEKAVVAETNQERAKHGLPPLAW 102 (207)
T ss_pred hhHHHHHHHHHHHHhhcCCCCccc
Confidence 333344567999999999999975
No 93
>PF09935 DUF2167: Protein of unknown function (DUF2167); InterPro: IPR018682 This family of various hypothetical membrane-anchored prokaryotic proteins has no known function.
Probab=33.68 E-value=35 Score=28.13 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=19.5
Q ss_pred hhhccHHHHHHHHHHCCCCceeEE
Q 031699 120 ETLPGGLSVNKKRADRGLSQLKVW 143 (154)
Q Consensus 120 Et~~~~~~iN~~R~~~gl~~l~i~ 143 (154)
....+.+..|+.|.++|++++.+.
T Consensus 87 ~~k~~t~e~N~eR~~~G~~~l~l~ 110 (239)
T PF09935_consen 87 SMKEGTEESNKERKKRGYPPLHLV 110 (239)
T ss_pred HHHHhHHhhhHHHHhcCCCceEEe
Confidence 344567789999999999998764
No 94
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=32.47 E-value=2.2e+02 Score=23.27 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=31.7
Q ss_pred cCCCCCHHHHHHHHHHHHHh--cCcEEEEEcCCCccc-cCC---CCCCCCCHHHHHHHHHH
Q 031699 29 TFDRLHDGHRLFLKASAELA--RDRIVVGVCDGPMLT-NKQ---FAELIQPVDERMRNVEA 83 (154)
Q Consensus 29 tFDplH~GH~~ll~~A~~~~--~~~viVgvt~~~~~~-~k~---~~~~i~~~~~R~~~v~~ 83 (154)
|-+.+|.||+.-+..+..+- .-.+++-+++..-.- ++. ..++..+.++-.+..+.
T Consensus 10 Tg~~lHLG~~~~~~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~ 70 (269)
T cd00805 10 TAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKY 70 (269)
T ss_pred CCCcccHHHHHHHHHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHH
Confidence 44689999998877776663 236777787754332 121 11223555555544443
No 95
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=32.38 E-value=2.2e+02 Score=25.05 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=31.9
Q ss_pred cCCCCCHHHHHHHHHHHHHh--cCcEEEEEcCCC-ccccC---CCCCCCCCHHHHHHHHHHH
Q 031699 29 TFDRLHDGHRLFLKASAELA--RDRIVVGVCDGP-MLTNK---QFAELIQPVDERMRNVEAY 84 (154)
Q Consensus 29 tFDplH~GH~~ll~~A~~~~--~~~viVgvt~~~-~~~~k---~~~~~i~~~~~R~~~v~~~ 84 (154)
|-+.+|.||+..+...+.+- ..++++.+.+.. .+.++ ...++..+.++..+.++.+
T Consensus 43 T~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i 104 (410)
T PRK13354 43 TAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTY 104 (410)
T ss_pred CCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHH
Confidence 44569999988888777663 235666664332 22111 1123456777666655544
No 96
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=31.76 E-value=26 Score=28.36 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.1
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHh
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELA 48 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~ 48 (154)
.+.+||++|+. .||+.++.+.++.+
T Consensus 98 ~Ga~GGR~DH~-l~nl~ll~~~~~~~ 122 (212)
T COG1564 98 LGALGGRLDHA-LANLFLLLRPAKSG 122 (212)
T ss_pred EecCCChHHHH-HHHHHHHHhhhhcc
Confidence 35689999999 99999999986655
No 97
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=30.81 E-value=1e+02 Score=25.93 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCcEEEEEcCCCc---cccCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCcccccccc
Q 031699 37 HRLFLKASAELARDRIVVGVCDGPM---LTNKQFAELIQPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLE 113 (154)
Q Consensus 37 H~~ll~~A~~~~~~~viVgvt~~~~---~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~~gps~t~~~l~ 113 (154)
|+.+|.++...+ .+.|++|-... +. |.......|.++|++.++.+.+. .-.+.+.+-|| =|..+|.+++
T Consensus 131 Dld~l~~~~~~~--~v~V~~Sitt~d~~l~-k~~EP~apsp~~Ri~al~~l~ea-Gi~~~v~v~PI----iP~~~d~e~e 202 (297)
T COG1533 131 DLDLLLELAERG--KVRVAVSITTLDEELA-KILEPRAPSPEERLEALKELSEA-GIPVGLFVAPI----IPGLNDEELE 202 (297)
T ss_pred hHHHHHhhhhcc--ceEEEEEeecCcHHHH-HhcCCCCcCHHHHHHHHHHHHHC-CCeEEEEEecc----cCCCChHHHH
Confidence 455555555443 35566532221 11 11122346889999999987665 22255555565 2333444444
Q ss_pred eee
Q 031699 114 AIV 116 (154)
Q Consensus 114 ~lV 116 (154)
.++
T Consensus 203 ~~l 205 (297)
T COG1533 203 RIL 205 (297)
T ss_pred HHH
Confidence 433
No 98
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=28.54 E-value=25 Score=26.69 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.7
Q ss_pred cHHHHHHHHHHCCCCceeEEEeee
Q 031699 124 GGLSVNKKRADRGLSQLKVWVPVL 147 (154)
Q Consensus 124 ~~~~iN~~R~~~gl~~l~i~~i~~ 147 (154)
.|.+||.+|.+.++..-++++|-+
T Consensus 60 k~a~iNaiRT~~li~~aDvvVvrF 83 (144)
T TIGR03646 60 AAASINNIRTRKLIEKADVVIALF 83 (144)
T ss_pred cccchhhHHHHHHHhhCCEEEEEe
Confidence 377999999999999999888753
No 99
>COG4714 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=27.79 E-value=48 Score=27.62 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.5
Q ss_pred hhccHHHHHHHHHHCCCCceeEE
Q 031699 121 TLPGGLSVNKKRADRGLSQLKVW 143 (154)
Q Consensus 121 t~~~~~~iN~~R~~~gl~~l~i~ 143 (154)
...|-..-|.+|.+||.++++|+
T Consensus 135 lreGt~eaNk~R~~rGI~~iEi~ 157 (303)
T COG4714 135 LREGTEEANKIRRERGIAEIEIV 157 (303)
T ss_pred HHhccHhhhHHHHHcCCCceeee
Confidence 45667789999999999999875
No 100
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=27.52 E-value=4.5e+02 Score=23.55 Aligned_cols=99 Identities=13% Similarity=0.216 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhc---CcEEEEEcCCCccccCCCCCCCCCHHHHHHHHHHHHHhcCCCceE-EEEEccCCCCCccccc
Q 031699 35 DGHRLFLKASAELAR---DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKSIKPELVV-QTEPITDPYGPSIVDE 110 (154)
Q Consensus 35 ~GH~~ll~~A~~~~~---~~viVgvt~~~~~~~k~~~~~i~~~~~R~~~v~~~l~~~~p~~~v-~i~ei~d~~gps~t~~ 110 (154)
.-|-.+++.|++++. .-|+|--|++..-...++ .-+.|.+-| +.|...-+.++ +.. .++-=.|.-||..|-.
T Consensus 21 sahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGY-TGmtP~dF~-~~V~~iA~~~g--f~~~~iiLggDHlGPn~Wq~ 96 (421)
T PRK15052 21 SAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGGY-TGMTPADFR-EFVYGIADKVG--FPRERIILGGDHLGPNCWQQ 96 (421)
T ss_pred CCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCc-CCCCHHHHH-HHHHHHHHHcC--CChhcEEeecCCCCCccccC
Confidence 457788888888863 345555566553223332 333455555 66777666654 333 2233359999998866
Q ss_pred ccceeeehhhhhccHHHHHHHHHHCCCCceeE
Q 031699 111 NLEAIVVSKETLPGGLSVNKKRADRGLSQLKV 142 (154)
Q Consensus 111 ~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l~i 142 (154)
. -.+|.+..|...=..=.+-|+..+.|
T Consensus 97 ~-----pa~eAM~~A~~li~ayV~AGF~kIHL 123 (421)
T PRK15052 97 E-----PADAAMEKSVELVKAYVRAGFSKIHL 123 (421)
T ss_pred C-----CHHHHHHHHHHHHHHHHHcCCceEEe
Confidence 5 67788888888777778888887654
No 101
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=26.91 E-value=35 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.6
Q ss_pred cHHHHHHHHHHCCCCceeEEEeee
Q 031699 124 GGLSVNKKRADRGLSQLKVWVPVL 147 (154)
Q Consensus 124 ~~~~iN~~R~~~gl~~l~i~~i~~ 147 (154)
.|.+||.+|.+..+..-++++|-+
T Consensus 57 k~a~iN~iRT~~li~~aDvVVvrF 80 (141)
T PF11071_consen 57 KGAKINAIRTRTLIEKADVVVVRF 80 (141)
T ss_pred hhhhhhHHHHHHHHhhCCEEEEEe
Confidence 378999999999999998888743
No 102
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.51 E-value=1.9e+02 Score=25.65 Aligned_cols=30 Identities=27% Similarity=0.255 Sum_probs=22.0
Q ss_pred cCCCCCHHHHHHHHHHHHHh--cCcEEEEEcC
Q 031699 29 TFDRLHDGHRLFLKASAELA--RDRIVVGVCD 58 (154)
Q Consensus 29 tFDplH~GH~~ll~~A~~~~--~~~viVgvt~ 58 (154)
|=+-+|.||+..+...+.+- .-+++|-+.+
T Consensus 42 Ta~slHlGhlv~l~kL~~fQ~aGh~~ivLigd 73 (401)
T COG0162 42 TAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGD 73 (401)
T ss_pred CCCccchhhHHHHHHHHHHHHCCCeEEEEecc
Confidence 44569999999999888763 2567766654
No 103
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=25.24 E-value=2.4e+02 Score=23.66 Aligned_cols=63 Identities=16% Similarity=0.242 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEccCCCCCcccccccceeeehhhhhccHHHHHHHHHHCCCCce
Q 031699 75 DERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGLSQL 140 (154)
Q Consensus 75 ~~R~~~v~~~l~~~~p~~~v~i~ei~d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl~~l 140 (154)
..|.+.+...|++++|.++++...- ...+ ......|.+|.+..+.....+||+.-.++|.+=+
T Consensus 72 k~Kaea~~~~L~eLNp~V~V~~~~~--~~~~-~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI 134 (286)
T cd01491 72 KNRAEASQARLAELNPYVPVTVSTG--PLTT-DELLKFQVVVLTDASLEDQLKINEFCHSPGIKFI 134 (286)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEec--cCCH-HHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEE
Confidence 3588888889999999887776642 2222 2345788999998888888899999999885433
No 104
>TIGR03474 incFII_RepA incFII family plasmid replication initiator RepA. Members of this protein are the plasmid replication initiator RepA of incFII (plasmid incompatibility group F-II) plasmids. R1 and R100 are plasmids in this group. Immediately upstream of repA is found tap, a leader peptide of about 24 amino acids, often not assigned as a gene in annotated plasmid sequences. Note that other, non-homologous plasmid replication proteins share the gene symbol (repA) and similar names (plasmid replication protein RepA).
Probab=24.85 E-value=2.8e+02 Score=23.22 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=37.9
Q ss_pred HHHHhcCCCceEEEEEccCC----CCCcc---cccccceeeehhhhhccHHH-----HHHHHHHCCCCceeE
Q 031699 83 AYIKSIKPELVVQTEPITDP----YGPSI---VDENLEAIVVSKETLPGGLS-----VNKKRADRGLSQLKV 142 (154)
Q Consensus 83 ~~l~~~~p~~~v~i~ei~d~----~gps~---t~~~l~~lVvs~Et~~~~~~-----iN~~R~~~gl~~l~i 142 (154)
.|++...- +.+..+-|+ |=|.. |..=+..+=+|++.+.+|.+ +|..|.+.|+.||.+
T Consensus 114 ~fLEpmGf---I~cek~wD~~~g~yiPk~I~lTplFF~l~gis~~~l~~A~~qql~W~Nk~l~kkGl~pltl 182 (275)
T TIGR03474 114 TFLSELGL---ITYQTEYDPQIGCNIPTDITFTPALFSALDVSEVAVAAARRSRVEWENKQRKKQGLDTLEM 182 (275)
T ss_pred HHHHhcCc---eeeeeecchhhhccCCceeEecHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhcCCCcccH
Confidence 48888752 444444454 44442 32233445589999888654 999999999999865
No 105
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=23.77 E-value=16 Score=26.73 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=19.7
Q ss_pred EEEEcccCCCCCHHHHHHHHHHHHHh
Q 031699 23 AVVLGGTFDRLHDGHRLFLKASAELA 48 (154)
Q Consensus 23 ~v~~gGtFDplH~GH~~ll~~A~~~~ 48 (154)
.+.+||.||+. .|++.+|.+..+.+
T Consensus 91 ~Ga~GgR~DH~-lanl~~l~~~~~~~ 115 (123)
T PF04263_consen 91 LGALGGRFDHT-LANLNLLYKYKKRG 115 (123)
T ss_dssp ES-SSSSHHHH-HHHHHHHHHHHTTT
T ss_pred EecCCCcHHHH-HHHHHHHHHHHHcC
Confidence 46678999998 99999998887554
No 106
>KOG3157 consensus Proline synthetase co-transcribed protein [General function prediction only]
Probab=23.09 E-value=1.5e+02 Score=24.38 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=38.5
Q ss_pred HHHHHHHHhc---CCCceEEEEE-c-cCCCCCcccccccceeeehhhhhccHHHHHHHHHHCCC-CceeEEE
Q 031699 79 RNVEAYIKSI---KPELVVQTEP-I-TDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRADRGL-SQLKVWV 144 (154)
Q Consensus 79 ~~v~~~l~~~---~p~~~v~i~e-i-~d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~~gl-~~l~i~~ 144 (154)
+-|+++++.. .++++..++- + ++..++-.+.+.+ ..|-+-+|.+-|.++|..|...|. +||.+.+
T Consensus 60 NYVQEl~eKap~lp~DI~WHFIG~lQsnK~kkl~svpnL-~~vetVDseK~A~~ld~a~~k~g~~~PL~V~V 130 (244)
T KOG3157|consen 60 NYVQELIEKAPLLPDDIKWHFIGHLQSNKCKKLLSVPNL-YSVETVDSEKKARKLDSAWSKLGPDNPLKVLV 130 (244)
T ss_pred HHHHHHHHhcccCcccceeeeechhhhcccchhccCCce-EEEEecchHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 3455665554 2334444433 1 1223333343332 334556677889999999999999 7888765
No 107
>KOG2972 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.64 E-value=2.2e+02 Score=23.89 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=28.4
Q ss_pred CCceEEEEEccCCCCCcccccccceeeehhhhhccHHHHHHHHHH
Q 031699 90 PELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLSVNKKRAD 134 (154)
Q Consensus 90 p~~~v~i~ei~d~~gps~t~~~l~~lVvs~Et~~~~~~iN~~R~~ 134 (154)
+.+.+.+++ -+||+.. .|||..+|-.-...+|.+|.-
T Consensus 107 ~a~e~~~ye---~~gp~GV-----~liVealTdnknr~~~~iRs~ 143 (276)
T KOG2972|consen 107 SAVEFIEYE---AMGPSGV-----GLIVEALTDNKNRAASSIRSI 143 (276)
T ss_pred CceEEEEEe---eecCCce-----EEEEEeeeccHhHHHHHHHHH
Confidence 334444444 4899884 789999999999999999964
No 108
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=22.21 E-value=3.6e+02 Score=22.22 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHhc--CcEEEEEcC
Q 031699 31 DRLHDGHRLFLKASAELAR--DRIVVGVCD 58 (154)
Q Consensus 31 DplH~GH~~ll~~A~~~~~--~~viVgvt~ 58 (154)
+.+|.||+.-+.....+-. -.+++-+.+
T Consensus 11 ~~lHlGh~~~l~~~~~lq~~g~~~~~~I~d 40 (273)
T cd00395 11 DSLHIGHLIGLLTFRRFQHAGHRPIFLIGG 40 (273)
T ss_pred CCccHHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4799999988777776631 245555543
No 109
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=21.78 E-value=98 Score=21.89 Aligned_cols=53 Identities=13% Similarity=0.194 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEEccCCCCCcccccccceeeehhhhhccHHH--HHHHHHHCCCCc
Q 031699 72 QPVDERMRNVEAYIKSIKPELVVQTEPITDPYGPSIVDENLEAIVVSKETLPGGLS--VNKKRADRGLSQ 139 (154)
Q Consensus 72 ~~~~~R~~~v~~~l~~~~p~~~v~i~ei~d~~gps~t~~~l~~lVvs~Et~~~~~~--iN~~R~~~gl~~ 139 (154)
-+.++|.+.+.+.++... + ||.....-+++ .|.|+.+.|+. ++++++.+...|
T Consensus 19 ~dsd~R~~llqEm~~gLg---------~----~p~ag~lLf~~--~~~~~~k~AEqELL~Ei~Rrr~~qp 73 (93)
T PF07216_consen 19 RDSDHRNDLLQEMLEGLG---------L----GPVAGELLFGG--SSPELMKQAEQELLEEIQRRRQQQP 73 (93)
T ss_pred HhhHHHHHHHHHHHHhcC---------C----ChhHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456899999999888864 3 44443333333 67777777765 777777665554
No 110
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=21.69 E-value=1.7e+02 Score=24.19 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=25.7
Q ss_pred CCCcEEEEc-ccCCCCCHHHHHHHHHHHHHhcCcEEE
Q 031699 19 NSYGAVVLG-GTFDRLHDGHRLFLKASAELARDRIVV 54 (154)
Q Consensus 19 ~~~~~v~~g-GtFDplH~GH~~ll~~A~~~~~~~viV 54 (154)
.+.++++|| ||++|.|-=--.-+..|.+...|-++.
T Consensus 123 ~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~ 159 (238)
T COG0528 123 EKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLK 159 (238)
T ss_pred HcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEE
Confidence 346666665 599999988888888888877554443
Done!