BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031700
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9Y|A Chain A, Solution Structure Of Arabidopsis Thaliana Protein
At1g70830, A Member Of The Major Latex Protein Family
Length = 166
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 5/153 (3%)
Query: 2 ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
+S GKLE ++E+K+SADKF KA + + + EGD GS+ Y
Sbjct: 13 SSLVGKLETDVEIKASADKFHHMFAGKPHHVSKASPGNIQGCDLHEGDWGTVGSIVFWNY 72
Query: 62 A-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKW 118
DG KV+ E+IE V+ ++T++VI+GDL+K YK+F + V PK G GS+V W
Sbjct: 73 VHDGE--AKVAKERIEAVEPDKNLITFRVIEGDLMKEYKSFLLTIQVTPKPGGPGSIVHW 130
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
E+EK S++V P + F ++ +E+D+++L
Sbjct: 131 HLEYEKISEEVAHPETLLQFCVEVSKEIDEHLL 163
>pdb|2BK0|A Chain A, Crystal Structure Of The Major Celery Allergen Api G 1
pdb|2BK0|B Chain B, Crystal Structure Of The Major Celery Allergen Api G 1
Length = 154
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 6/123 (4%)
Query: 10 VELEVKSSADK-FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIV 68
+EL SA+K F G + D T+ PKA YKS+++ +GDG PG++++IT DG PI
Sbjct: 8 LELTSSVSAEKIFQGFVIDVDTVLPKAAPGAYKSVEI-KGDG-GPGTLKIITLPDGGPIT 65
Query: 69 KVSTEKIENVDEANKVVTYKVIDGD-LLKYYKAFKGIVSVNPKGE-GSLVKWACEFEKAS 126
+ T +I+ V++ Y VIDGD LL + ++ + V + P + GS+ K F
Sbjct: 66 TM-TLRIDGVNKEALTFDYSVIDGDILLGFIESIENHVVLVPTADGGSICKTTAIFHTKG 124
Query: 127 DDV 129
D V
Sbjct: 125 DAV 127
>pdb|2WQL|A Chain A, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|B Chain B, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|C Chain C, Crystal Structure Of The Major Carrot Allergen Dau C 1
pdb|2WQL|D Chain D, Crystal Structure Of The Major Carrot Allergen Dau C 1
Length = 154
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 17/151 (11%)
Query: 12 LEVKSS--ADK-FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIV 68
LE+ SS A+K F G + D T+ PKA + YKS++V +GDG A G+VR+IT +GSPI
Sbjct: 8 LEITSSVSAEKIFSGIVLDVDTVIPKAATGAYKSVEV-KGDGGA-GTVRIITLPEGSPIT 65
Query: 69 KVSTEKIENVDEANK-VVTY--KVIDGD-LLKYYKAFKGIVSVNPKGE-GSLVKWACEFE 123
++ D NK ++Y VIDGD LL + ++ + + V P + GS+ K F
Sbjct: 66 TMTVRT----DAVNKEALSYDSTVIDGDILLGFIESIETHMVVVPTADGGSITKTTAIFH 121
Query: 124 KASDDVPDPSVIKDFALKN---FQEVDDYIL 151
D V IK +N F+ ++ Y++
Sbjct: 122 TKGDAVVPEENIKFADAQNTALFKAIEAYLI 152
>pdb|1VJH|A Chain A, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|1VJH|B Chain B, Crystal Structure Of Gene Product Of At1g24000 From
Arabidopsis Thaliana
pdb|2Q3Q|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
pdb|2Q3Q|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
At1g24000 From Arabidopsis Thaliana
Length = 122
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 36/152 (23%)
Query: 2 ASAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY 61
++ G L V+ +VK ADKF+ + + T + E +GK
Sbjct: 1 STLKGALSVKFDVKCPADKFFSAFVEDTN-------------RPFEKNGKT--------- 38
Query: 62 ADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNP--KGEGSLVKWA 119
+IE VD K T + ++ KY+K KG ++V P G+GS V W
Sbjct: 39 ------------EIEAVDLVKKTXTIQXSGSEIQKYFKTLKGSIAVTPIGVGDGSHVVWT 86
Query: 120 CEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151
FEK D+ DP I D ++K F+++D+ IL
Sbjct: 87 FHFEKVHKDIDDPHSIIDESVKYFKKLDEAIL 118
>pdb|2LPX|A Chain A, Solution Structure Of Strawberry Allergen Fra A 1e
Length = 170
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 21 FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80
F + D+ L PK K ++LEGDG PG+++ IT+ +GS V KI ++D+
Sbjct: 20 FKAFVLDADNLIPKIAPQAVKCAEILEGDG-GPGTIKKITFGEGSHYGYVK-HKIHSIDK 77
Query: 81 ANKVVTYKVIDGDLL 95
N +Y +I+GD L
Sbjct: 78 VNHTYSYSLIEGDAL 92
>pdb|3NMP|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMP|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 Mutant
A93f In Complex With Pyrabactin
pdb|3NMT|A Chain A, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
pdb|3NMV|A Chain A, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
Length = 178
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13 EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
+ + A W IR P+ + H K +++ GDG GSVR +T G P ST
Sbjct: 31 RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLPF-STST 86
Query: 73 EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
E++E VD+ ++V++++V+ G+ K +K + SVN
Sbjct: 87 ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 120
>pdb|3KAZ|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KAZ|C Chain C, Crystal Structure Of Abscisic Acid Receptor Pyl2
pdb|3KB0|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2
pdb|3KB3|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 176
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13 EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
+ + A W IR P+ + H K +++ GDG GSVR +T G P ST
Sbjct: 30 RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 85
Query: 73 EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
E++E VD+ ++V++++V+ G+ K +K + SVN
Sbjct: 86 ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 119
>pdb|3KDH|A Chain A, Structure Of Ligand-Free Pyl2
pdb|3KDH|B Chain B, Structure Of Ligand-Free Pyl2
pdb|3KDH|C Chain C, Structure Of Ligand-Free Pyl2
pdb|3KDI|A Chain A, Structure Of (+)-Aba Bound Pyl2
pdb|3NR4|A Chain A, Pyrabactin-Bound Pyl2
pdb|3NR4|B Chain B, Pyrabactin-Bound Pyl2
pdb|3NR4|C Chain C, Pyrabactin-Bound Pyl2
pdb|3NS2|A Chain A, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|B Chain B, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3NS2|C Chain C, High-Resolution Structure Of Pyrabactin-Bound Pyl2
pdb|3KL1|A Chain A, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
pdb|3KL1|B Chain B, Crystal Structure Of Abscisic Acid Receptor Pyl2 At 1.55 A
Length = 190
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13 EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
+ + A W IR P+ + H K +++ GDG GSVR +T G P ST
Sbjct: 42 RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 97
Query: 73 EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
E++E VD+ ++V++++V+ G+ K +K + SVN
Sbjct: 98 ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 131
>pdb|3NJ0|A Chain A, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|B Chain B, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
pdb|3NJ0|C Chain C, X-Ray Crystal Structure Of The Pyl2-Pyrabactin A Complex
Length = 193
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13 EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
+ + A W IR P+ + H K +++ GDG GSVR +T G P ST
Sbjct: 45 RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 100
Query: 73 EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
E++E VD+ ++V++++V+ G+ K +K + SVN
Sbjct: 101 ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 134
>pdb|3NMH|A Chain A, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|B Chain B, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
pdb|3NMH|C Chain C, Crystal Structure Of The Abscisic Receptor Pyl2 In Complex
With Pyrabactin
Length = 178
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13 EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
+ + A W IR P+ + H K +++ GDG GSVR +T G P ST
Sbjct: 31 RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 86
Query: 73 EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
E++E VD+ ++V++++V+ G+ K +K + SVN
Sbjct: 87 ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 120
>pdb|3UJL|A Chain A, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 177
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13 EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
+ + A W IR P+ + H K +++ GDG GSVR +T G P ST
Sbjct: 31 RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 86
Query: 73 EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
E++E VD+ ++V++++V+ G+ K +K + SVN
Sbjct: 87 ERLEFVDDDHRVLSFRVVGGE--HRLKNYKSVTSVN 120
>pdb|3NJ1|A Chain A, X-Ray Crystal Structure Of The Pyl2(V114i)-Pyrabactin A
Complex
Length = 193
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 6/96 (6%)
Query: 13 EVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVST 72
+ + A W IR P+ + H K +++ GDG GSVR +T G P ST
Sbjct: 45 RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDV-GSVREVTVISGLP-ASTST 100
Query: 73 EKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVN 108
E++E VD+ ++V++++++ G+ K +K + SVN
Sbjct: 101 ERLEFVDDDHRVLSFRIVGGE--HRLKNYKSVTSVN 134
>pdb|1E09|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Length = 159
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 21 FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80
F + D+ L PK K ++LEGDG PG+++ IT+ +GS V KI+++D+
Sbjct: 19 FKAFVLDADNLVPKIAPQAIKHSEILEGDG-GPGTIKKITFGEGSQYGYVK-HKIDSIDK 76
Query: 81 ANKVVTYKVIDGDLL 95
N +Y +I+GD L
Sbjct: 77 ENYSYSYTLIEGDAL 91
>pdb|2K7H|A Chain A, Nmr Solution Structure Of Soybean Allergen Gly M 4
Length = 157
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%)
Query: 25 IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY-ADGSPIVKVSTEKIENVDEANK 83
+ D+ + PKA +KS++ +EG+G PG+++ IT+ DG K KIE++DEAN
Sbjct: 23 VTDADNVIPKALDS-FKSVENVEGNG-GPGTIKKITFLEDGE--TKFVLHKIESIDEANL 78
Query: 84 VVTYKVIDGDLLKYYK---AFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFAL 140
+Y V+ G L F + P G GS K ++E D P+ +K
Sbjct: 79 GYSYSVVGGAALPDTAEKITFDSKLVAGPNG-GSAGKLTVKYETKGDAEPNQDELKTGKA 137
Query: 141 KN---FQEVDDYIL 151
K F+ ++ Y+L
Sbjct: 138 KADALFKAIEAYLL 151
>pdb|3IE5|A Chain A, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
pdb|3IE5|B Chain B, Crystal Structure Of Hyp-1 Protein From Hypericum
Perforatum (St John's Wort) Involved In Hypericin
Biosynthesis
Length = 165
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 21 FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80
F + + + KA H +KS +++EGDG G+V IT+ DG P+ + K + +D
Sbjct: 26 FKALVLERHQVLVKAQPHVFKSGEIIEGDGGV-GTVTKITFVDGHPLTYM-LHKFDEIDA 83
Query: 81 ANKVVTYKVIDGDLLK 96
AN Y + +GD+L+
Sbjct: 84 ANFYCKYTLFEGDVLR 99
>pdb|3QRZ|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
pdb|3QRZ|C Chain C, Crystal Structure Of Native Abscisic Acid Receptor Pyl5 At
2.6 Angstrom
Length = 223
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 14 VKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTE 73
+ + + W +R PK + + + ++++GDG G +R + G P V STE
Sbjct: 86 IHAPPESVWALVRRFDN--PKVYKNFIRQCRIVQGDGLHVGDLREVMVVSGLPAVS-STE 142
Query: 74 KIENVDEANKVVTYKVIDGD-LLKYYKA 100
++E +DE V+++ V+ GD LK Y++
Sbjct: 143 RLEILDEERHVISFSVVGGDHRLKNYRS 170
>pdb|4A8U|A Chain A, Crystal Structure Of Native Birch Pollen Allergen Bet V 1
Isoform J
pdb|4A8V|A Chain A, Crystal Structure Of Birch Pollen Allergen Bet V 1 Isoform
J In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
Length = 159
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 13/144 (9%)
Query: 14 VKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTE 73
V +A F I D LFPK S++ +EG+G PG+++ I++ +G P K +
Sbjct: 12 VIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFPEGFPF-KYVKD 69
Query: 74 KIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDV 129
+++ VD N +Y VI+ GD L+ IV+ P G GS++K ++ D
Sbjct: 70 RVDEVDHTNFKYSYSVIEGGPVGDTLEKISNEIKIVAT-PNG-GSILKINNKYHTKGD-- 125
Query: 130 PDPSVIKDFALKNFQEVDDYILKA 153
+K +K +E+ + +L+A
Sbjct: 126 ---HEVKAEQIKASKEMGETLLRA 146
>pdb|1FSK|A Chain A, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|D Chain D, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|G Chain G, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1FSK|J Chain J, Complex Formation Between A Fab Fragment Of A Monoclonal
Igg Antibody And The Major Allergen From Birch Pollen
Bet V 1
pdb|1BV1|A Chain A, Birch Pollen Allergen Bet V 1
pdb|1BTV|A Chain A, Structure Of Bet V 1, Nmr, 20 Structures
Length = 159
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 6 GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
G E E S +A F I D LFPK S++ +EG+G PG+++ I++
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFP 59
Query: 63 DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
+G P K ++++ VD N Y VI+ GD L+ IV+ P G GS++K
Sbjct: 60 EGLPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
+ ++ D +K +K +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKEMGETLLRA 146
>pdb|4A80|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With 8-Anilinonaphthalene-1-Sulfonate (Ans)
pdb|4A81|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With 8-Anilinonaphthalene-1-Sulfonate
( Ans) And Deoxycholic Acid
pdb|4A83|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Deoxycholate.
pdb|4A85|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Kinetin.
pdb|4A86|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Ternary Complex With Kinetin And
8-Anilinonaphthalene-1- Sulfonate (Ans)
pdb|4A87|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Naringenin.
pdb|4A88|A Chain A, Crystal Structure Of Native Major Birch Pollen Allergen
Bet V 1 Isoform A
pdb|4A8G|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
In Complex With Dimethylbenzylammonium Propane Sulfonate
Length = 159
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 6 GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
G E E S +A F I D LFPK S++ +EG+G PG+++ I++
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFP 59
Query: 63 DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
+G P K ++++ VD N Y VI+ GD L+ IV+ P G GS++K
Sbjct: 60 EGFPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
+ ++ D +K +K +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKEMGETLLRA 146
>pdb|1B6F|A Chain A, Birch Pollen Allergen Bet V 1
Length = 159
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 6 GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
G E E S +A F I D LFPK S++ +EG+G PG+++ I++
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNG-GPGTIKKISFP 59
Query: 63 DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
+G P K ++++ VD N Y VI+ GD L+ IV+ P G GS++K
Sbjct: 60 EGFPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
+ ++ D +K +K +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKELGETLLRA 146
>pdb|1H2O|A Chain A, Solution Structure Of The Major Cherry Allergen Pru Av 1
Mutant E45w
Length = 159
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 21 FWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80
F + D+ L PK K ++L GDG PG+++ IT+ +GS V KI+++D+
Sbjct: 19 FKAFVLDADNLVPKIAPQAIKHSEILWGDG-GPGTIKKITFGEGSQYGYVK-HKIDSIDK 76
Query: 81 ANKVVTYKVIDGDLL 95
N +Y +I+GD L
Sbjct: 77 ENYSYSYTLIEGDAL 91
>pdb|1LLT|A Chain A, Birch Pollen Allergen Bet V 1 Mutant E45s
Length = 159
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 16/155 (10%)
Query: 6 GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
G E E S +A F I D LFPK S++ + G+G PG+++ I++
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNG-GPGTIKKISFP 59
Query: 63 DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
+G P K ++++ VD N Y VI+ GD L+ IV+ P G GS++K
Sbjct: 60 EGLPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
+ ++ D +K +K +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKEMGETLLRA 146
>pdb|1QMR|A Chain A, Birch Pollen Allergen Bet V 1 Mutant N28t, K32q, E45s,
P108g
Length = 159
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 6 GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
G E E S +A F I D TLFP+ S++ + G+G PG+++ I++
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDTLFPQVAPQAISSVENISGNG-GPGTIKKISFP 59
Query: 63 DGSPIVKVSTEKIENVDEANKVVTYKVIDG 92
+G P K ++++ VD N Y VI+G
Sbjct: 60 EGLPF-KYVKDRVDEVDHTNFKYNYSVIEG 88
>pdb|4A84|A Chain A, Crystal Structure Of Major Birch Pollen Allergen Bet V 1 A
F30v Mutant In Complex With Deoxycholate
Length = 159
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 16/155 (10%)
Query: 6 GKLEVELEVKS---SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA 62
G E E S +A F I D L PK S++ +EG+G PG+++ I++
Sbjct: 1 GVFNYETETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNG-GPGTIKKISFP 59
Query: 63 DGSPIVKVSTEKIENVDEANKVVTYKVID----GDLLKYYKAFKGIVSVNPKGEGSLVKW 118
+G P K ++++ VD N Y VI+ GD L+ IV+ P G GS++K
Sbjct: 60 EGFPF-KYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVAT-PDG-GSILKI 116
Query: 119 ACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153
+ ++ D +K +K +E+ + +L+A
Sbjct: 117 SNKYHTKGD-----HEVKAEQVKASKEMGETLLRA 146
>pdb|3RWS|A Chain A, Crystal Structure Of Medicago Truncatula Nodulin 13
(Mtn13) In Complex With Trans-Zeatin
Length = 168
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 17 SADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD--GSPIVKVSTE 73
SA+K + G + D ++PKA + + LEGDG PG+++ +T+ GS + +
Sbjct: 20 SAEKLYRGIVEDGNIIYPKALPRFIEKAETLEGDG-GPGTIKKLTFVGDFGS-----TKQ 73
Query: 74 KIENVDEANKVVTYKVIDGDLLKYYKAFKGIVS---VNPKGEGSLVKWACEFEKASDDV 129
I+ VD N TY V +G L K + V EG +VK ++ DD+
Sbjct: 74 HIDMVDRENCAYTYSVYEGIALSDQPLEKIVFEFKLVPTPEEGCIVKSTTKYYTKGDDI 132
>pdb|1FM4|A Chain A, Crystal Structure Of The Birch Pollen Allergen Bet V 1l
Length = 159
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 14 VKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTE 73
V +A F I D L PK S++ +EG+G PG+++ I + +G P K +
Sbjct: 12 VIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNG-GPGTIKKINFPEGFPF-KYVKD 69
Query: 74 KIENVDEANKVVTYKVIDG 92
+++ VD N Y VI+G
Sbjct: 70 RVDEVDHTNFKYNYSVIEG 88
>pdb|1XDF|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
pdb|1XDF|B Chain B, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2a From Yellow Lupine
Length = 157
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 25 IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV 84
++D+ + PKA +SI+ +EG+G PG+++ +T +G K KIE VDEAN
Sbjct: 23 VKDADAIIPKAV-EAIQSIETVEGNG-GPGTIKKLTLIEGGE-TKYVLHKIEAVDEANLR 79
Query: 85 VTYKVIDG 92
Y ++ G
Sbjct: 80 YNYSIVGG 87
>pdb|2QIM|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With Cytokinin
pdb|3E85|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
Llpr-10.2b From Yellow Lupine In Complex With
Diphenylurea
Length = 158
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 25 IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV 84
+ D+ + PKA +S++++EG+G PG+++ +T+ +G K KIE +DEAN
Sbjct: 24 VTDADIIIPKAV-ETIQSVEIVEGNG-GPGTIKKLTFIEGGE-SKYVLHKIEAIDEANLG 80
Query: 85 VTYKVIDG 92
Y ++ G
Sbjct: 81 YNYSIVGG 88
>pdb|2FLH|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|2FLH|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein
From Mung Bean In Complex With Cytokinin
pdb|3C0V|A Chain A, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|B Chain B, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|C Chain C, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
pdb|3C0V|D Chain D, Crystal Structure Of Cytokinin-Specific Binding Protein In
Complex With Cytokinin And Ta6br12
Length = 155
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 9 EVELEVKSSADKFWGSI-RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSP 66
+ EL V+ A W + +D T+ PK H K +Q++EGDG G++ + + + SP
Sbjct: 8 QTELSVRLEA--LWAVLSKDFITVVPKVLPHIVKDVQLIEGDGGV-GTILIFNFLPEVSP 64
Query: 67 IVKVSTEKIENVDEANKVVTYKVIDGDL----LKYYKA 100
E+I DE++ + +VI+G L YYK
Sbjct: 65 --SYQREEITEFDESSHEIGLQVIEGGYLSQGLSYYKT 100
>pdb|3US7|A Chain A, Crystal Structure Of Phytohormone Binding Protein From
Medicago Truncatula In Complex With Gibberellic Acid
(Ga3)
Length = 156
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 26 RDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV 85
+D T + PK + K +QV+EGDG G+ + + G V E I DE + +
Sbjct: 24 KDITLVVPKVLPNIVKDVQVIEGDGGV-GTKLIFNFLPGIAPVNYQREVITEYDELSHTI 82
Query: 86 TYKVIDGDLLK----YYKA 100
+V++G L YYK
Sbjct: 83 GLQVVEGGYLNQGLSYYKT 101
>pdb|3OQU|A Chain A, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
pdb|3OQU|B Chain B, Crystal Structure Of Native Abscisic Acid Receptor Pyl9
With Aba
Length = 205
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 54 GSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK 110
GS+R + G P STE++E +D+ ++ K+I GD K + I++V+P+
Sbjct: 96 GSLREVNVKSGLP-ATTSTERLELLDDEEHILGIKIIGGD--HRLKNYSSILTVHPE 149
>pdb|4AB4|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AB4|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|A Chain A, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
pdb|4AEO|B Chain B, Structure Of Xenobiotic Reductase B From Pseudomonas
Putida In Complex With Tnt
Length = 362
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 5 GGKLE----VELEVKSSADKFWGSIRDSTTLFPKAFSHD 39
GG LE + LEV +A + WG+ R L P+A +HD
Sbjct: 196 GGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHD 234
>pdb|3UQH|A Chain A, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3UQH|B Chain B, Crystal Strcuture Of Aba Receptor Pyl10 (Apo)
pdb|3R6P|A Chain A, Crystal Structure Of Abscisic Acid-Bound Pyl10
Length = 191
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 45 VLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKA 100
V++G GSVR + G P K STE +E +D+ ++ +++ GD LK Y +
Sbjct: 63 VVQGKKLEVGSVREVDLKSGLPATK-STEVLEILDDNEHILGIRIVGGDHRLKNYSS 118
>pdb|3RT2|A Chain A, Crystal Structure Of Apo-Pyl10
Length = 183
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 45 VLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKA 100
V++G GSVR + G P K STE +E +D+ ++ +++ GD LK Y +
Sbjct: 63 VVQGKKLEVGSVREVDLKSGLPATK-STEVLEILDDNEHILGIRIVGGDHRLKNYSS 118
>pdb|3RT0|C Chain C, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
pdb|3RT0|D Chain D, Crystal Structure Of Pyl10-Hab1 Complex In The Absence Of
Abscisic Acid (Aba)
Length = 183
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 45 VLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKA 100
V++G GSVR + G P K STE +E +D+ ++ +++ GD LK Y +
Sbjct: 63 VVQGKKLEVGSVREVDLKSGLPATK-STEVLEILDDNEHILGIRIVGGDHRLKNYSS 118
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 95 LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKD 137
++Y KAF + +NP+ + ++V+ +F+ D + D +K+
Sbjct: 323 IEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFLKN 365
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 27.7 bits (60), Expect = 3.0, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 95 LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKD 137
++Y KAF + +NP+ + ++V+ +F+ D + D +K+
Sbjct: 308 IEYIKAFGSTIVINPEKDKTMVQELLDFKDKVDHIIDICFLKN 350
>pdb|2W8D|A Chain A, Distinct And Essential Morphogenic Functions For Wall- And
Lipo-Teichoic Acids In Bacillus Subtilis
pdb|2W8D|B Chain B, Distinct And Essential Morphogenic Functions For Wall- And
Lipo-Teichoic Acids In Bacillus Subtilis
Length = 436
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 88 KVIDGDLLKYYKAFKGIVSVNP 109
K+I+GDLL++Y+ KG VNP
Sbjct: 394 KIINGDLLRFYEP-KGFKKVNP 414
>pdb|3ROF|A Chain A, Crystal Structure Of The S. Aureus Protein Tyrosine
Phosphatase Ptpa
Length = 158
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 103 GIVSVNPKGEGSLVKWACEFEKASD-DVPDPSVIKDF------ALKNFQEVDDYILK 152
I S+NP +G L K EF + DVPDP +F L + + DYI+K
Sbjct: 97 NIKSINPNLKGQLFKLL-EFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVK 152
>pdb|3FUQ|A Chain A, Glycosylated Sv2 And Gangliosides As Dual Receptors For
Botulinum Neurotoxin Serotype F
Length = 417
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 121 EFEKASDDVPDPSVIKDF 138
E E D PDPS++KDF
Sbjct: 215 EIETLYSDEPDPSILKDF 232
>pdb|3RSJ|A Chain A, Structure Of Hcrf In Complex With Ganglioside Gd1a
pdb|3RSJ|B Chain B, Structure Of Hcrf In Complex With Ganglioside Gd1a
pdb|3RSJ|C Chain C, Structure Of Hcrf In Complex With Ganglioside Gd1a
pdb|3RSJ|D Chain D, Structure Of Hcrf In Complex With Ganglioside Gd1a
Length = 413
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 121 EFEKASDDVPDPSVIKDF 138
E E D PDPS++KDF
Sbjct: 211 EIETLYSDEPDPSILKDF 228
>pdb|1I8D|A Chain A, Crystal Structure Of Riboflavin Synthase
pdb|1I8D|B Chain B, Crystal Structure Of Riboflavin Synthase
pdb|1I8D|C Chain C, Crystal Structure Of Riboflavin Synthase
Length = 213
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 80 EANKVVTYKVIDGDLLKY--YKAFKGI 104
E N+ + +KV D L+KY YK F GI
Sbjct: 116 ENNRQIWFKVQDSQLMKYILYKGFIGI 142
>pdb|3LTV|A Chain A, Mouse-Human Sod1 Chimera
pdb|3LTV|B Chain B, Mouse-Human Sod1 Chimera
pdb|3LTV|C Chain C, Mouse-Human Sod1 Chimera
pdb|3LTV|D Chain D, Mouse-Human Sod1 Chimera
pdb|3LTV|E Chain E, Mouse-Human Sod1 Chimera
pdb|3LTV|F Chain F, Mouse-Human Sod1 Chimera
Length = 153
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 40 YKSIQVLEGDGKAPGSVRLITYADGSPIV 68
K++ VL+GDG G++ A G P+V
Sbjct: 2 MKAVCVLKGDGPVQGTIHFEQKASGEPVV 30
>pdb|3GTT|A Chain A, Mouse Sod1
pdb|3GTT|B Chain B, Mouse Sod1
pdb|3GTT|C Chain C, Mouse Sod1
pdb|3GTT|D Chain D, Mouse Sod1
pdb|3GTT|E Chain E, Mouse Sod1
pdb|3GTT|F Chain F, Mouse Sod1
Length = 153
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 41 KSIQVLEGDGKAPGSVRLITYADGSPIV 68
K++ VL+GDG G++ A G P+V
Sbjct: 3 KAVCVLKGDGPVQGTIHFEQKASGEPVV 30
>pdb|3F62|B Chain B, Crystal Structure Of Human Il-18 In Complex With
Ectromelia Virus Il- 18 Binding Protein
Length = 158
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 52 APGSVRLIT-YADGSP-----IVKVSTEKIENVDEANKVVTYKVID 91
AP ++ +I+ Y D P + V +EKI + NK++++K ++
Sbjct: 43 APRTIFIISMYKDSQPRGMAVTISVKSEKISTLSSENKIISFKEMN 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,947,123
Number of Sequences: 62578
Number of extensions: 202876
Number of successful extensions: 695
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 58
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)