Query 031700
Match_columns 154
No_of_seqs 114 out of 1037
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00407 Bet_v_1: Pathogenesis 100.0 1.2E-40 2.7E-45 244.4 17.7 148 5-153 3-151 (151)
2 cd07816 Bet_v1-like Ligand-bin 100.0 5.2E-36 1.1E-40 219.0 20.3 145 6-153 1-148 (148)
3 cd07821 PYR_PYL_RCAR_like Pyra 99.8 2.9E-17 6.3E-22 116.1 16.7 134 7-150 2-139 (140)
4 PF10604 Polyketide_cyc2: Poly 99.6 7.3E-14 1.6E-18 98.6 19.0 106 7-124 3-108 (139)
5 cd08866 SRPBCC_11 Ligand-bindi 99.6 1.7E-14 3.7E-19 103.3 14.7 134 8-150 1-142 (144)
6 cd08865 SRPBCC_10 Ligand-bindi 99.6 5E-14 1.1E-18 99.2 15.6 132 8-150 1-138 (140)
7 cd07819 SRPBCC_2 Ligand-bindin 99.6 1.7E-13 3.6E-18 97.1 17.0 113 7-127 3-115 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.5 3.1E-12 6.6E-17 91.3 14.7 133 8-150 1-140 (142)
9 cd07813 COQ10p_like Coenzyme Q 99.5 1.7E-12 3.6E-17 92.7 12.7 132 8-151 1-136 (138)
10 cd08862 SRPBCC_Smu440-like Lig 99.5 1.2E-11 2.7E-16 87.3 16.2 106 7-125 2-108 (138)
11 cd07812 SRPBCC START/RHO_alpha 99.4 2.1E-11 4.5E-16 83.9 14.8 112 9-128 2-114 (141)
12 cd07822 SRPBCC_4 Ligand-bindin 99.4 1.1E-10 2.3E-15 82.3 16.6 134 7-150 1-140 (141)
13 cd08860 TcmN_ARO-CYC_like N-te 99.4 1.1E-10 2.4E-15 85.0 16.8 113 6-127 1-115 (146)
14 cd07824 SRPBCC_6 Ligand-bindin 99.4 8.7E-11 1.9E-15 84.9 16.1 109 7-126 2-113 (146)
15 cd07818 SRPBCC_1 Ligand-bindin 99.4 8.1E-11 1.8E-15 84.8 15.6 137 6-150 2-148 (150)
16 cd07825 SRPBCC_7 Ligand-bindin 99.3 1.8E-10 3.9E-15 82.3 15.2 135 8-150 2-143 (144)
17 cd07817 SRPBCC_8 Ligand-bindin 99.3 1.9E-10 4E-15 81.4 14.2 106 8-127 2-108 (139)
18 cd07820 SRPBCC_3 Ligand-bindin 99.3 2E-10 4.3E-15 82.1 14.0 109 8-125 1-112 (137)
19 cd05018 CoxG Carbon monoxide d 99.3 2.7E-10 5.8E-15 80.9 14.0 113 7-127 2-115 (144)
20 cd07814 SRPBCC_CalC_Aha1-like 99.3 1.9E-10 4.1E-15 81.2 13.1 134 8-150 2-137 (139)
21 PRK10724 hypothetical protein; 99.1 3E-09 6.6E-14 78.6 13.0 109 7-127 16-126 (158)
22 PF03364 Polyketide_cyc: Polyk 99.1 5.5E-09 1.2E-13 73.4 13.7 102 14-127 1-106 (130)
23 cd07823 SRPBCC_5 Ligand-bindin 99.0 3.7E-08 8E-13 71.0 14.1 113 9-128 2-117 (146)
24 cd08898 SRPBCC_CalC_Aha1-like_ 98.9 1E-07 2.2E-12 67.9 13.0 136 7-152 2-145 (145)
25 cd08899 SRPBCC_CalC_Aha1-like_ 98.8 1.3E-07 2.9E-12 69.2 12.8 127 7-153 12-138 (157)
26 cd08893 SRPBCC_CalC_Aha1-like_ 98.8 3.6E-07 7.7E-12 64.2 13.3 133 7-151 1-135 (136)
27 cd08900 SRPBCC_CalC_Aha1-like_ 98.7 3.2E-06 6.9E-11 60.7 16.3 138 8-151 2-142 (143)
28 cd08894 SRPBCC_CalC_Aha1-like_ 98.7 4.8E-07 1.1E-11 64.7 11.8 133 8-151 2-138 (139)
29 COG3427 Carbon monoxide dehydr 98.7 5.5E-07 1.2E-11 65.5 11.4 137 7-151 2-144 (146)
30 cd08897 SRPBCC_CalC_Aha1-like_ 98.7 1.9E-06 4.2E-11 61.1 14.1 128 7-151 1-132 (133)
31 cd08895 SRPBCC_CalC_Aha1-like_ 98.7 3.5E-06 7.6E-11 60.7 15.6 134 8-151 2-145 (146)
32 COG5637 Predicted integral mem 98.7 2.9E-07 6.2E-12 68.8 9.5 107 6-127 70-179 (217)
33 cd07826 SRPBCC_CalC_Aha1-like_ 98.6 1.3E-06 2.8E-11 62.9 12.4 136 8-151 2-141 (142)
34 cd08896 SRPBCC_CalC_Aha1-like_ 98.6 1.6E-06 3.4E-11 62.6 11.8 134 8-151 2-145 (146)
35 cd08891 SRPBCC_CalC Ligand-bin 98.4 1.3E-05 2.7E-10 58.0 13.2 132 8-151 2-148 (149)
36 PF06240 COXG: Carbon monoxide 98.4 4.3E-05 9.3E-10 55.0 15.1 105 11-127 2-111 (140)
37 cd08876 START_1 Uncharacterize 98.2 0.00016 3.4E-09 54.4 15.7 140 6-149 41-193 (195)
38 COG2867 Oligoketide cyclase/li 98.2 3.6E-05 7.9E-10 55.8 10.6 110 7-127 3-114 (146)
39 PF08327 AHSA1: Activator of H 98.2 4.2E-05 9.1E-10 52.8 10.5 122 15-150 1-123 (124)
40 cd08901 SRPBCC_CalC_Aha1-like_ 98.2 4.2E-05 9.1E-10 54.5 10.6 122 8-151 2-131 (136)
41 cd08892 SRPBCC_Aha1 Putative h 98.1 0.00025 5.4E-09 49.9 13.5 122 8-150 2-124 (126)
42 COG3832 Uncharacterized conser 98.1 0.00022 4.8E-09 51.9 13.2 137 5-151 7-148 (149)
43 PTZ00220 Activator of HSP-90 A 97.4 0.0058 1.3E-07 43.4 11.1 119 14-150 1-126 (132)
44 cd08874 START_STARD9-like C-te 97.3 0.037 8E-07 42.6 15.3 120 8-131 47-182 (205)
45 PF08982 DUF1857: Domain of un 97.1 0.021 4.6E-07 41.8 12.1 70 8-87 2-79 (149)
46 cd08873 START_STARD14_15-like 97.1 0.096 2.1E-06 41.2 16.6 142 8-153 79-235 (235)
47 cd08863 SRPBCC_DUF1857 DUF1857 97.0 0.067 1.5E-06 38.8 13.7 118 8-144 2-129 (141)
48 PF10698 DUF2505: Protein of u 96.6 0.16 3.5E-06 37.2 14.8 111 8-129 1-132 (159)
49 cd08905 START_STARD1-like Chol 96.5 0.2 4.3E-06 38.4 13.6 142 7-151 50-207 (209)
50 COG4276 Uncharacterized conser 96.4 0.22 4.8E-06 35.9 14.3 111 6-128 2-121 (153)
51 cd08877 START_2 Uncharacterize 95.9 0.5 1.1E-05 36.1 13.2 136 7-151 47-213 (215)
52 cd08913 START_STARD14-like Lip 95.9 0.66 1.4E-05 36.6 15.2 115 7-124 82-209 (240)
53 cd08914 START_STARD15-like Lip 95.2 1.2 2.5E-05 35.1 15.2 113 7-124 79-205 (236)
54 cd08906 START_STARD3-like Chol 95.1 1.1 2.4E-05 34.3 15.1 140 7-151 50-207 (209)
55 cd00177 START Lipid-binding ST 94.9 1 2.2E-05 32.8 15.1 118 7-127 40-167 (193)
56 cd08903 START_STARD5-like Lipi 94.1 2 4.3E-05 32.8 15.8 141 8-151 48-206 (208)
57 cd08871 START_STARD10-like Lip 93.9 2.2 4.8E-05 32.7 15.2 116 8-127 49-175 (222)
58 cd08868 START_STARD1_3_like Ch 93.8 2.2 4.9E-05 32.3 16.4 141 7-151 49-206 (208)
59 cd08911 START_STARD7-like Lipi 93.0 3.2 6.9E-05 31.6 14.6 141 7-151 46-205 (207)
60 cd08870 START_STARD2_7-like Li 91.3 5.3 0.00011 30.4 16.5 140 7-151 51-207 (209)
61 smart00234 START in StAR and p 88.8 8 0.00017 28.8 17.1 141 7-151 46-201 (206)
62 cd08867 START_STARD4_5_6-like 88.3 9.2 0.0002 28.8 15.7 140 7-150 47-205 (206)
63 cd08872 START_STARD11-like Cer 85.7 15 0.00033 28.7 13.5 140 8-152 54-226 (235)
64 cd08869 START_RhoGAP C-termina 85.6 13 0.00029 27.9 14.3 115 8-127 46-170 (197)
65 KOG3177 Oligoketide cyclase/li 83.9 6.9 0.00015 30.3 7.1 104 12-127 74-183 (227)
66 PF11687 DUF3284: Domain of un 78.4 20 0.00043 24.9 10.7 98 10-126 3-104 (120)
67 cd08904 START_STARD6-like Lipi 73.9 38 0.00082 25.9 13.2 114 8-127 48-178 (204)
68 cd08910 START_STARD2-like Lipi 73.6 37 0.00081 25.8 13.7 136 7-150 50-204 (207)
69 cd08908 START_STARD12-like C-t 69.3 49 0.0011 25.3 13.2 115 7-127 53-177 (204)
70 TIGR02777 LigD_PE_dom DNA liga 53.2 30 0.00066 25.5 4.3 61 54-127 50-111 (156)
71 cd08885 RHO_alpha_C_1 C-termin 47.5 1.1E+02 0.0023 22.3 6.9 45 81-125 80-125 (190)
72 PF11485 DUF3211: Protein of u 45.1 1.2E+02 0.0025 21.9 9.1 99 7-123 2-101 (136)
73 PF01852 START: START domain; 43.8 1.3E+02 0.0028 22.1 17.9 139 7-153 47-203 (206)
74 PRK05645 lipid A biosynthesis 37.0 83 0.0018 25.0 5.0 37 117-154 238-274 (295)
75 TIGR02208 lipid_A_msbB lipid A 35.6 86 0.0019 25.1 4.9 36 118-154 249-284 (305)
76 PF03279 Lip_A_acyltrans: Bact 35.3 94 0.002 24.5 5.1 38 116-154 246-283 (295)
77 TIGR02207 lipid_A_htrB lipid A 33.6 95 0.0021 24.8 4.9 37 117-154 245-281 (303)
78 PRK08733 lipid A biosynthesis 32.6 1E+02 0.0022 24.8 4.8 37 117-154 248-284 (306)
79 PRK08706 lipid A biosynthesis 30.5 1.1E+02 0.0024 24.2 4.8 37 117-154 232-268 (289)
80 PF13298 LigD_N: DNA polymeras 29.3 1.9E+02 0.0041 19.8 5.5 59 54-125 18-77 (105)
81 PRK06860 lipid A biosynthesis 28.1 1.4E+02 0.003 24.0 4.9 37 117-154 251-287 (309)
82 PF14801 GCD14_N: tRNA methylt 27.5 59 0.0013 19.6 2.0 42 72-116 9-53 (54)
83 cd07984 LPLAT_LABLAT-like Lyso 27.5 1.4E+02 0.003 21.5 4.6 37 117-154 145-181 (192)
84 PRK07920 lipid A biosynthesis 27.4 1.4E+02 0.0031 23.7 4.9 36 118-154 236-271 (298)
85 PRK08905 lipid A biosynthesis 27.2 1.3E+02 0.0028 23.9 4.6 35 118-154 228-262 (289)
86 PRK08943 lipid A biosynthesis 26.8 1.5E+02 0.0032 23.9 4.9 37 117-154 257-293 (314)
87 PRK08734 lipid A biosynthesis 26.1 1.5E+02 0.0033 23.7 4.9 37 117-154 239-275 (305)
88 KOG2936 Uncharacterized conser 25.7 2.7E+02 0.0059 22.8 6.1 99 7-126 174-276 (301)
89 PRK06553 lipid A biosynthesis 25.0 1.7E+02 0.0036 23.5 4.9 38 117-154 257-297 (308)
90 PRK05646 lipid A biosynthesis 23.7 1.8E+02 0.0039 23.3 4.9 37 117-154 249-285 (310)
91 KOG3294 WW domain binding prot 23.0 2.7E+02 0.0058 22.2 5.4 45 98-150 91-136 (261)
92 PF02087 Nitrophorin: Nitropho 22.6 3.4E+02 0.0074 20.4 5.7 40 71-110 50-89 (178)
93 PF08868 YugN: YugN-like famil 22.5 85 0.0019 22.5 2.4 28 123-150 104-131 (132)
94 COG5569 Uncharacterized conser 21.7 1.8E+02 0.0039 19.9 3.7 42 52-95 40-81 (108)
95 cd05703 S1_Rrp5_repeat_hs12_sc 20.7 2E+02 0.0043 17.7 3.7 19 71-89 53-71 (73)
96 PF10313 DUF2415: Uncharacteri 20.4 93 0.002 17.8 1.8 11 54-64 1-11 (43)
No 1
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=100.00 E-value=1.2e-40 Score=244.40 Aligned_cols=148 Identities=47% Similarity=0.816 Sum_probs=136.1
Q ss_pred cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700 5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~ 84 (154)
.++++.++++++||+++|+++++.++++|+++|+.|+|++++||+|+..||||.|+|.+|.+. .++|||++++|+++++
T Consensus 3 ~~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~-~~~Kekve~~D~~~~~ 81 (151)
T PF00407_consen 3 VGKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPF-KYVKEKVEAIDEENKT 81 (151)
T ss_dssp EEEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSE-EEEEEEEEEEETTTTE
T ss_pred cEEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCc-ceeEEEEEeecCCCcE
Confidence 579999999999999999999988889999999999999999999844459999999976664 6899999999999999
Q ss_pred EEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhC
Q 031700 85 VTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153 (154)
Q Consensus 85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~ 153 (154)
++|+++||+++..|++|..++++.|. +++|.++|+++|++.++..++|+.+++++..|+|+||+||++|
T Consensus 82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieayLlan 151 (151)
T PF00407_consen 82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAYLLAN 151 (151)
T ss_dssp EEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999998889999999999988 4679999999999999998899999999999999999999998
No 2
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=100.00 E-value=5.2e-36 Score=219.03 Aligned_cols=145 Identities=40% Similarity=0.624 Sum_probs=130.9
Q ss_pred ceEEEEEEEcCCHHHHHHHHhccCCCC-ccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700 6 GKLEVELEVKSSADKFWGSIRDSTTLF-PKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l-~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~ 84 (154)
|+++.+++|+||+|+||+++++|.+.+ +.|.| .|++|++++|+ +++||+|+|+|.+|.. .+++||||+++|+++|+
T Consensus 1 ~~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p-~v~~~~~~eG~-~~~GsvR~~~~~~~~~-~~~~kE~l~~~D~~~~~ 77 (148)
T cd07816 1 GTLEHEVELKVPAEKLWKAFVLDSHLLPPKLPP-VIKSVELLEGD-GGPGSIKLITFGPGGK-VKYVKERIDAVDEENKT 77 (148)
T ss_pred CcEEEEEEecCCHHHHHHHHhcChhhccccccc-cccEEEEEecC-CCCceEEEEEEcCCCc-ceEEEEEEEEEcccccE
Confidence 578999999999999999999997445 55666 99999999998 4999999999997753 25699999999999999
Q ss_pred EEEEEEecCccc-ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhC
Q 031700 85 VTYKVIDGDLLK-YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153 (154)
Q Consensus 85 ~~Y~~ieg~~~~-~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~ 153 (154)
|+|++++|+++. .|++|.++++|.|. +++|+++|+++|++.++..++|+.+++.+..+++.++.|++.+
T Consensus 78 ~~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T cd07816 78 YKYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGDAEPPEEEIKAGKEKALKMFKAVEAYL 148 (148)
T ss_pred EEEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCCCCCCHHHHHhHHHHHHHHHHHHHhcC
Confidence 999999999865 69999999999999 5789999999999999999999999999999999999998753
No 3
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.78 E-value=2.9e-17 Score=116.06 Aligned_cols=134 Identities=24% Similarity=0.479 Sum_probs=109.7
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
.++.+++|++|+++||+++.|+. .+++|+| .+++++++++.. ++|+++.+.+..|.. ++++++.+|+.++++.
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~-~~~~~~~~~~~~-~~g~~~~~~~~~g~~----~~~~i~~~~~~~~~i~ 74 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHP-AVASCELEGGGP-GVGAVRTVTLKDGGT----VRERLLALDDAERRYS 74 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhcc-CcceEEeecCCC-CCCeEEEEEeCCCCE----EEEEehhcCccCCEEE
Confidence 57889999999999999999996 6899999 688999887654 689999999987633 7899999988879999
Q ss_pred EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCCh---hhHHHHHHHHHHHHHHHH
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDP---SVIKDFALKNFQEVDDYI 150 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~---~~~~~~~~~~~k~ie~~l 150 (154)
|++.+|+. .+.++.+++++.|.+ ++|+|+|+.+|++... .+.+ ..+.+.....++.|+++|
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 75 YRIVEGPL--PVKNYVATIRVTPEGDGGTRVTWTAEFDPPEG-LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEecCCCC--CcccceEEEEEEECCCCccEEEEEEEEecCCC-cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 99998743 367788999999985 5899999999999976 2222 234466777788888776
No 4
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.65 E-value=7.3e-14 Score=98.55 Aligned_cols=106 Identities=27% Similarity=0.565 Sum_probs=86.5
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
+++.++.|++|+++||++++|+. .+++|.| .+.++++++++ ++|..+.+.. .|.. .+++++..+|++++.+.
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~-~~~~~~~~~~~--~~~~~~~~~~-~g~~---~~~~~i~~~~~~~~~~~ 74 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPE-NWPRWWP-GVKSVELLSGG--GPGTERTVRV-AGRG---TVREEITEYDPEPRRIT 74 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTT-GGGGTST-TEEEEEEEEEC--STEEEEEEEE-CSCS---EEEEEEEEEETTTTEEE
T ss_pred EEEEEEEECCCHHHHHHHHhChh-hhhhhhh-ceEEEEEcccc--ccceeEEEEe-cccc---ceeEEEEEecCCCcEEE
Confidence 78999999999999999999996 6999999 78899987633 4566566664 4422 27899999997799999
Q ss_pred EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEe
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEK 124 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~ 124 (154)
|++. .. .+..+.+++++.|.++||+|+|+.+|++
T Consensus 75 ~~~~-~~---~~~~~~~~~~~~~~~~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 75 WRFV-PS---GFTNGTGRWRFEPVGDGTRVTWTVEFEP 108 (139)
T ss_dssp EEEE-SS---SSCEEEEEEEEEEETTTEEEEEEEEEEE
T ss_pred EEEE-ec---ceeEEEEEEEEEEcCCCEEEEEEEEEEE
Confidence 9996 22 2457789999999987899999999998
No 5
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.64 E-value=1.7e-14 Score=103.29 Aligned_cols=134 Identities=16% Similarity=0.289 Sum_probs=93.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCC---ceeeeeeEEEEeeeCCCcE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS---PIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~---~~~~~~kErl~~~D~~~~~ 84 (154)
++.++.|++|+++||+++.|+. .+|+|+| .+++++++++.+ .+.........+. .+...+..++.+.++.++.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p-~v~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYD-NLAEFIP-NLAESRLLERNG--NRVVLEQTGKQGILFFKFEARVVLELREREEFPRE 76 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChh-hHHhhCc-CceEEEEEEcCC--CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCce
Confidence 4678999999999999999996 6999999 788999887643 1221111100110 0111244556667666899
Q ss_pred EEEEEEecCcccceeEEEEEEEEeeC-C-CCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHHHH
Q 031700 85 VTYKVIDGDLLKYYKAFKGIVSVNPK-G-EGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDDYI 150 (154)
Q Consensus 85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~-~-~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~l 150 (154)
+.|++++|+ +..|.+++++.|. + ++|+++|+.+++|... .+.+. .+.+.+..++++|.+.+
T Consensus 77 i~~~~~~g~----~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~-~p~~l~~~~~~~~~~~~l~~lr~~a 142 (144)
T cd08866 77 LDFEMVEGD----FKRFEGSWRLEPLADGGGTLLTYEVEVKPDFF-APVFLVEFVLRQDLPTNLLAIRAEA 142 (144)
T ss_pred EEEEEcCCc----hhceEEEEEEEECCCCCeEEEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999875 4788999999998 4 5899999999999864 22211 22344567777777654
No 6
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.62 E-value=5e-14 Score=99.25 Aligned_cols=132 Identities=13% Similarity=0.206 Sum_probs=96.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
++.++.|++|+++||+++.|+. .+++|.| .+.+++.+++...++|+...+... .|.... ++++++.+| +++.+.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~-~~~~w~~-~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~--~~~~v~~~~-p~~~~~ 75 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFE-NAPEWDP-GVVEVEKITDGPVGVGTRYHQVRKFLGRRIE--LTYEITEYE-PGRRVV 75 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCcc-chhhhcc-CceEEEEcCCCCCcCccEEEEEEEecCceEE--EEEEEEEec-CCcEEE
Confidence 3678999999999999999996 6999999 577888775544578999988775 454433 688999886 678999
Q ss_pred EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChh-----hHHHHHHHHHHHHHHHH
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPS-----VIKDFALKNFQEVDDYI 150 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~-----~~~~~~~~~~k~ie~~l 150 (154)
|....|+. .+..++++.|.+++|+++|+.+|+...-. .... .++..+..++++|.+++
T Consensus 76 ~~~~~~~~-----~~~~~~~~~~~~~~t~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~ 138 (140)
T cd08865 76 FRGSSGPF-----PYEDTYTFEPVGGGTRVRYTAELEPGGFA-RLLDPLMAPAFRRRARAALENLKALL 138 (140)
T ss_pred EEecCCCc-----ceEEEEEEEEcCCceEEEEEEEEccchhH-HHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 99876532 35789999998778999999999973211 1111 22234556666666654
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.60 E-value=1.7e-13 Score=97.08 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=83.1
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
+++.++.|++|+++||+++.|+. .+|+|+| .+.+++.+++++++.+....+++..+..... ..-+++ .+ ..+.++
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~-~~~~i~ 77 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVE-AYPEWSP-KVKSVEVLLRDNDGRPEMVRIGVGAYGIKDT-YALEYT-WD-GAGSVS 77 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChh-hhhhhCc-ceEEEEEeccCCCCCEEEEEEEEeeeeEEEE-EEEEEE-Ec-CCCcEE
Confidence 78999999999999999999996 6999999 6889998765432333444455543321101 111222 22 367899
Q ss_pred EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD 127 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~ 127 (154)
|+..+|.. ...+.+++++.|.+++|+|+|+.++++...
T Consensus 78 ~~~~~~~~---~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~ 115 (140)
T cd07819 78 WTLVEGEG---NRSQEGSYTLTPKGDGTRVTFDLTVELTVP 115 (140)
T ss_pred EEEecccc---eeEEEEEEEEEECCCCEEEEEEEEEEecCC
Confidence 99998763 567889999999977999999999998764
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.48 E-value=3.1e-12 Score=91.35 Aligned_cols=133 Identities=17% Similarity=0.255 Sum_probs=92.0
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
++.++.|++|+++||+++.|+. .+|+|+|. .+++.+++++ +...++.+... .|... . . +....+|++.+++.
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~-~~p~~~p~--~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~-~-~~~~~~~~~~~~i~ 73 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAE-RWPEFLPT--VHVERLELDG-GVERLRMWATAFDGSVH-T-W-TSRRVLDPEGRRIV 73 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHH-hhhccCCC--ceEEEEEEcC-CEEEEEEEEEcCCCcEE-E-E-EEEEEEcCCCCEEE
Confidence 4689999999999999999996 69999995 5666555432 11245556665 44432 2 2 34445777799999
Q ss_pred EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCChhhHH-----HHHHHHHHHHHHHH
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDPSVIK-----DFALKNFQEVDDYI 150 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~~~~~-----~~~~~~~k~ie~~l 150 (154)
|..++++. .+..+.+++++.|.+ ++|.|+|+.+|++.... +-+.... ..+..++++|.+++
T Consensus 74 ~~~~~~~~--~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 74 FRQEEPPP--PVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDS-PEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred EEEeeCCC--ChhhheeEEEEEECCCCcEEEEEEEEEEECCCC-chhHHHHHHHHccccHHHHHHHHHHh
Confidence 99988533 267888999999995 78999999999998652 2222222 22455666665553
No 9
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.47 E-value=1.7e-12 Score=92.69 Aligned_cols=132 Identities=20% Similarity=0.243 Sum_probs=95.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
++.++.|++|++.||+++.|+. .+|+|+| .+++++++++.+ .+....++.. .|... .+..++. ++. .++++
T Consensus 1 ~~~s~~i~ap~~~v~~~i~D~~-~~~~~~p-~~~~~~vl~~~~--~~~~~~~~~~~~~~~~--~~~~~~~-~~~-~~~i~ 72 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVADVE-RYPEFLP-WCTASRVLERDE--DELEAELTVGFGGIRE--SFTSRVT-LVP-PESIE 72 (138)
T ss_pred CeEEEEcCCCHHHHHHHHHHHH-hhhhhcC-CccccEEEEcCC--CEEEEEEEEeeccccE--EEEEEEE-ecC-CCEEE
Confidence 3678999999999999999996 6999999 788999998653 3455556655 44332 2445554 665 77899
Q ss_pred EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCC--hhhHHHHHHHHHHHHHHHHh
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPD--PSVIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~--~~~~~~~~~~~~k~ie~~l~ 151 (154)
+..++|+ ++.+.+++++.|.+ ++|+|+|..+|++..+.... -..+.+....+++++++.+.
T Consensus 73 ~~~~~g~----~~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~ 136 (138)
T cd07813 73 AELVDGP----FKHLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAK 136 (138)
T ss_pred EEecCCC----hhhceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9988884 46788999999995 78999999999998642111 11233555666777666554
No 10
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.45 E-value=1.2e-11 Score=87.34 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=81.3
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
+++.++.|+||+++||+++.|+. .+++|+| .+++++..++.. ++|+..+++...+.. +..++.+++ +.++++
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~-~~~~~~~~~~~~-~~G~~~~~~~~~~~~----~~~~i~~~~-p~~~~~ 73 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVE-NWPAWTP-SVETVRLEGPPP-AVGSSFKMKPPGLVR----STFTVTELR-PGHSFT 73 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhh-hcccccC-cceEEEEecCCC-CCCcEEEEecCCCCc----eEEEEEEec-CCCEEE
Confidence 57899999999999999999996 6999999 688998776543 678877776544333 567888887 556788
Q ss_pred EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeC
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKA 125 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~ 125 (154)
++.... . ..+..++++.+.+ ++|+++|+.+|...
T Consensus 74 ~~~~~~-~----~~~~~~~~~~~~~~~~t~l~~~~~~~~~ 108 (138)
T cd08862 74 WTGPAP-G----ISAVHRHEFEAKPDGGVRVTTSESLSGP 108 (138)
T ss_pred EEecCC-C----EEEEEEEEEEEcCCCcEEEEEEEEeecc
Confidence 876432 1 2445788998885 78999999988754
No 11
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.42 E-value=2.1e-11 Score=83.88 Aligned_cols=112 Identities=19% Similarity=0.347 Sum_probs=89.0
Q ss_pred EEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEE
Q 031700 9 EVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYK 88 (154)
Q Consensus 9 ~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~ 88 (154)
+.++.|++|+++||+++.|+. .+++|.| .+.+++..++.....|....+.+..+... ....++..+++ +..++|.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~~~~ 76 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSP-GLERVEVLGGGEGGVGARFVGGRKGGRRL--TLTSEVTEVDP-PRPGRFR 76 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCc-ccceEEEcCCCCccceeEEEEEecCCccc--cceEEEEEecC-CCceEEE
Confidence 578899999999999999996 6999999 68888877765456777777766523322 26788887765 7789999
Q ss_pred EEecCcccceeEEEEEEEEeeCCC-CeEEEEEEEEEeCCCC
Q 031700 89 VIDGDLLKYYKAFKGIVSVNPKGE-GSLVKWACEFEKASDD 128 (154)
Q Consensus 89 ~ieg~~~~~~~~~~~t~~v~~~~~-~s~v~Wt~~~e~~~~~ 128 (154)
...++.. ..+..++++.+.++ +|+++|+.++++....
T Consensus 77 ~~~~~~~---~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 77 VTGGGGG---VDGTGEWRLEPEGDGGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EecCCCC---cceeEEEEEEECCCCcEEEEEEEEEecCCcc
Confidence 9887653 57788999999965 8999999999988764
No 12
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.38 E-value=1.1e-10 Score=82.33 Aligned_cols=134 Identities=12% Similarity=0.075 Sum_probs=92.5
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CC-CceeeeeeEEEEeeeCCCcE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG-SPIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G-~~~~~~~kErl~~~D~~~~~ 84 (154)
.++.++.|++|+++||+++.|+. .+++|+| .+.+++... . ++|+...+.+. ++ ... .+.+++.++| +.++
T Consensus 1 ~v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~-~~~~~~~~~--~-~~G~~~~~~~~~~~~~~~--~~~~~v~~~~-p~~~ 72 (141)
T cd07822 1 TISTEIEINAPPEKVWEVLTDFP-SYPEWNP-FVRSATGLS--L-ALGARLRFVVKLPGGPPR--SFKPRVTEVE-PPRR 72 (141)
T ss_pred CeEEEEEecCCHHHHHHHHhccc-cccccCh-hheeEeccc--c-CCCCEEEEEEeCCCCCcE--EEEEEEEEEc-CCCE
Confidence 36889999999999999999996 6999998 566665421 2 57888888776 32 332 2678889886 5789
Q ss_pred EEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCC---ChhhHHHHHHHHHHHHHHHH
Q 031700 85 VTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVP---DPSVIKDFALKNFQEVDDYI 150 (154)
Q Consensus 85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~---~~~~~~~~~~~~~k~ie~~l 150 (154)
+.|+...++.. .-....++.+.|. +++|+++|+..|........ -...+.+.+..+++.|.+++
T Consensus 73 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 140 (141)
T cd07822 73 LAWRGGLPFPG--LLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARA 140 (141)
T ss_pred eEEEecCCCCc--EeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhh
Confidence 99998776542 2345578999998 68899999988875432111 01123344555556665553
No 13
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.37 E-value=1.1e-10 Score=85.04 Aligned_cols=113 Identities=22% Similarity=0.394 Sum_probs=83.5
Q ss_pred ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcE
Q 031700 6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~ 84 (154)
|+.+.+++|++||+.||+++.|.. ..|.|+| .++++++++.++.+.|..-++.+. .|... .|.-|+ ..|...++
T Consensus 1 ~~~~~si~i~a~~~~v~~lvaDv~-~~P~~~~-~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~-~w~s~~--~~~~~~~~ 75 (146)
T cd08860 1 GRTDNSIVIDAPLDLVWDMTNDIA-TWPDLFS-EYAEAEVLEEDGDTVRFRLTMHPDANGTVW-SWVSER--TLDPVNRT 75 (146)
T ss_pred CcceeEEEEcCCHHHHHHHHHhhh-hhhhhcc-ceEEEEEEEecCCeEEEEEEEEeccCCEEE-EEEEEE--EecCCCcE
Confidence 467899999999999999999996 6999999 688999887654455533222332 44332 333332 26788888
Q ss_pred EEEE-EEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700 85 VTYK-VIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD 127 (154)
Q Consensus 85 ~~Y~-~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~ 127 (154)
+.+. ..+| ++....++++|.|.++||+|++..+|+..++
T Consensus 76 i~~~~~~~~----p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~ 115 (146)
T cd08860 76 VRARRVETG----PFAYMNIRWEYTEVPEGTRMRWVQDFEMKPG 115 (146)
T ss_pred EEEEEecCC----CcceeeeeEEEEECCCCEEEEEEEEEEECCC
Confidence 8874 2232 2678889999999866799999999997754
No 14
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.37 E-value=8.7e-11 Score=84.87 Aligned_cols=109 Identities=18% Similarity=0.379 Sum_probs=80.7
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEc-CCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCc
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLE-GDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANK 83 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~e-G~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~ 83 (154)
.+..+..|++|+++||+++.|+. .+|+|.| .+++++.++ |++.++|+.-++... .|.... +.-++..+ +..+
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~-~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~v~~~-~p~~ 76 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAE-SWPDWWP-GVERVVELEPGDEAGIGARRRYTWRGLLPYRLR--FELRVTRI-EPLS 76 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChh-hcchhhh-ceEEEEEccCCCCCCcceEEEEEEEecCCcEEE--EEEEEEee-cCCc
Confidence 36778899999999999999996 6999999 688998887 333477777655433 232221 44555555 4777
Q ss_pred EEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCC
Q 031700 84 VVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKAS 126 (154)
Q Consensus 84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~ 126 (154)
.+.|.. +|++ + ...++++.|.++||.|+++.+++..+
T Consensus 77 ~~~~~~-~g~~----~-~~~~~~~~~~~~gt~vt~~~~~~~~~ 113 (146)
T cd07824 77 LLEVRA-SGDL----E-GVGRWTLAPDGSGTVVRYDWEVRTTK 113 (146)
T ss_pred EEEEEE-EEee----e-EEEEEEEEEcCCCEEEEEEEEEEcCH
Confidence 899984 6653 2 25789999987789999999999765
No 15
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.36 E-value=8.1e-11 Score=84.78 Aligned_cols=137 Identities=14% Similarity=0.126 Sum_probs=91.9
Q ss_pred ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccce---EEEEc-CCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCC
Q 031700 6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKS---IQVLE-GDGKAPGSVRLITYADGSPIVKVSTEKIENVDEA 81 (154)
Q Consensus 6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s---~~~~e-G~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~ 81 (154)
-+++.++.|++|+++||+++.|+. .+|+|.|. ... +.... +...++|+...++...+... ...++..++ .
T Consensus 2 ~~~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~-~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~---~~~~v~~~~-p 75 (150)
T cd07818 2 YRVERSIVINAPPEEVFPYVNDLK-NWPEWSPW-EKLDPDMKRTYSGPDSGVGASYSWEGNDKVGE---GEMEITESV-P 75 (150)
T ss_pred eEEEEEEEEeCCHHHHHHHHhCcc-cCcccCch-hhcCcceEEEecCCCCCCCeEEEEecCCcccc---eEEEEEecC-C
Confidence 368999999999999999999996 69999993 433 22111 22237888877776542111 345667774 6
Q ss_pred CcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCC-----C-hhhHHHHHHHHHHHHHHHH
Q 031700 82 NKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVP-----D-PSVIKDFALKNFQEVDDYI 150 (154)
Q Consensus 82 ~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~-----~-~~~~~~~~~~~~k~ie~~l 150 (154)
++++.|++..++++. ....+++.+.|.++||.++|+.+|+....... . ...+++.+...+++|.+++
T Consensus 76 ~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 148 (150)
T cd07818 76 NERIEYELRFIKPFE--ATNDVEFTLEPVGGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVL 148 (150)
T ss_pred CcEEEEEEEecCCcc--ccceEEEEEEEcCCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 788999998644321 26678999999988899999999986654210 0 1122333455555555554
No 16
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=1.8e-10 Score=82.34 Aligned_cols=135 Identities=15% Similarity=0.201 Sum_probs=93.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCC-CCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGD-GKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV 85 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~-~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~ 85 (154)
++.++.|+||+++||+++.|+. .+|+|.|.... .....++ .-++|+..++.+. .|.... +..+++.++ .++.+
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~~~~-~~~~~~~~~~~~G~~~~~~~~~~g~~~~--~~~~v~~~~-p~~~l 76 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGSGTV-REAIDGPRILAVGDVFRMAMRLDGGPYR--ITNHVVAFE-ENRLI 76 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCCCcc-ccccCCCccCCCCCEEEEEEEcCCCceE--EEEEEEEEC-CCCEE
Confidence 6889999999999999999996 69999984332 2222333 2378998888876 455432 566788775 67779
Q ss_pred EEEEE-ecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCC--CC-ChhhHHHHHHHHHHHHHHHH
Q 031700 86 TYKVI-DGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDD--VP-DPSVIKDFALKNFQEVDDYI 150 (154)
Q Consensus 86 ~Y~~i-eg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~--~~-~~~~~~~~~~~~~k~ie~~l 150 (154)
.|+.. .+.. ......++.+.|.+ ++|+++++.+|...+.. .. .......-....+++|++||
T Consensus 77 ~~~~~~~~~~---~~~~~~~~~l~~~~~g~T~vt~~~~~~g~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 77 AWRPGPAGQE---PGGHRWRWELEPIGPGRTRVTETYDWSAVTDLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EEEccCCCCC---CCceeEEEEEEECCCCcEEEEEEEeccCChhhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 99864 2222 12345688888885 78999999999866441 11 12234455778888888876
No 17
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=1.9e-10 Score=81.35 Aligned_cols=106 Identities=19% Similarity=0.294 Sum_probs=78.7
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTY 87 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y 87 (154)
++.++.|++|+++||+++.|+. .+|+|.| .++++++++|. +....+....|... .+..++..+ +.++.+.|
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~-~~~~~~~~~~~----~~~~~~~~~~g~~~--~~~~~v~~~-~~~~~i~~ 72 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMS-HVESVEQLDDT----RSHWKAKGPAGLSV--EWDAEITEQ-VPNERIAW 72 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhh-hhcEEEEcCCC----ceEEEEecCCCCcE--EEEEEEecc-CCCCEEEE
Confidence 6789999999999999999996 6999999 68899876542 22223333346543 255666655 46667999
Q ss_pred EEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCC
Q 031700 88 KVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASD 127 (154)
Q Consensus 88 ~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~ 127 (154)
....|.. .+.+++.+.|.+ ++|+++++.+|++...
T Consensus 73 ~~~~~~~-----~~~~~~~f~~~~~~~T~vt~~~~~~~~~~ 108 (139)
T cd07817 73 RSVEGAD-----PNAGSVRFRPAPGRGTRVTLTIEYEPPGG 108 (139)
T ss_pred EECCCCC-----CcceEEEEEECCCCCeEEEEEEEEECCcc
Confidence 8876542 456888899874 5899999999998864
No 18
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.29 E-value=2e-10 Score=82.12 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=83.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCC--CCCCcEEEEEEcCCC-ceeeeeeEEEEeeeCCCcE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG--KAPGSVRLITYADGS-PIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~--~~~GsvR~~~~~~G~-~~~~~~kErl~~~D~~~~~ 84 (154)
++.++.|++|+++||+.+.|.. .+|+|+| .+.++++++.++ -.+|+.-.+.+..+. .. . .+-+++.++ .++.
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~-~~~~~~p-~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~-~-w~~~it~~~-p~~~ 75 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPD-NLERLTP-PWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQ-R-WTTEITEVE-PPRR 75 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcc-hHHhcCC-CCCCeEEEecCCCcccCCcEEEEEEEecCCce-E-EEEEEEEEc-CCCe
Confidence 4678999999999999999997 5999999 677888874322 256788888887433 33 3 456667664 6778
Q ss_pred EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeC
Q 031700 85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKA 125 (154)
Q Consensus 85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~ 125 (154)
+++..+.|+. ..+..++.+.|.++||+++++++|++.
T Consensus 76 f~~~~~~G~~----~~w~h~~~f~~~~~gT~vt~~v~~~~p 112 (137)
T cd07820 76 FVDEQVSGPF----RSWRHTHRFEAIGGGTLMTDRVEYRLP 112 (137)
T ss_pred EEEEeccCCc----hhCEEEEEEEECCCceEEEEEEEEeCC
Confidence 9999887753 566678888888668999999999973
No 19
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.28 E-value=2.7e-10 Score=80.87 Aligned_cols=113 Identities=10% Similarity=0.238 Sum_probs=77.5
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC-CCceeeeeeEEEEeeeCCCcEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD-GSPIVKVSTEKIENVDEANKVV 85 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~-G~~~~~~~kErl~~~D~~~~~~ 85 (154)
+++.++.|++|+++||+++.|+. .+++|+| .+++++.++++ .......+.+.. +.... .+-++..+| +++.+
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~ 74 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPE-VLARCIP-GCESLEKIGPN--EYEATVKLKVGPVKGTFK--GKVELSDLD-PPESY 74 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHH-HHHhhcc-chhhccccCCC--eEEEEEEEEEccEEEEEE--EEEEEEecC-CCcEE
Confidence 57899999999999999999996 6999999 67788766532 111111222211 11221 245555554 44667
Q ss_pred EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCC
Q 031700 86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASD 127 (154)
Q Consensus 86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~ 127 (154)
.+.....+. .....+.+++++.|.+++|+|+|+.+|++.+.
T Consensus 75 ~~~~~~~~~-~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~ 115 (144)
T cd05018 75 TITGEGKGG-AGFVKGTARVTLEPDGGGTRLTYTADAQVGGK 115 (144)
T ss_pred EEEEEEcCC-CceEEEEEEEEEEecCCcEEEEEEEEEEEccC
Confidence 777654322 12568889999999877899999999998764
No 20
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.27 E-value=1.9e-10 Score=81.20 Aligned_cols=134 Identities=12% Similarity=0.147 Sum_probs=89.8
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
++.+++|+||+++||+++.|+. .+|+|.|+ +..+. ++....|+.+..... .|... .+..++..+| +++.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~-~~~~~---~~~~~Gg~~~~~~~~~~g~~~--~~~~~i~~~~-~~~~i~ 73 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP-TTTAE---MDLRVGGRWFFFMTGPDGEEG--WVSGEVLEVE-PPRRLV 73 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc-CCceE---EcccCCceEEEEEECCCCCEE--eccEEEEEEc-CCCeEE
Confidence 6789999999999999999996 69999995 22222 121111666655544 33332 3678889897 668899
Q ss_pred EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCC-ChhhHHHHHHHHHHHHHHHH
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVP-DPSVIKDFALKNFQEVDDYI 150 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~-~~~~~~~~~~~~~k~ie~~l 150 (154)
|+...++. +..-....++++.|.+++|+++|+.++.+...... --...+.....++..|.+||
T Consensus 74 ~~~~~~~~-~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 137 (139)
T cd07814 74 FTWAFSDE-TPGPETTVTVTLEETGGGTRLTLTHSGFPEEDAEQEAREGMEEGWTGTLDRLKALL 137 (139)
T ss_pred EEecccCC-CCCCceEEEEEEEECCCCEEEEEEEEccChHhHHHHHHhCHhhHHHHHHHHHHHHh
Confidence 99987653 11234567888999877899999999987643200 01122344556666666665
No 21
>PRK10724 hypothetical protein; Provisional
Probab=99.11 E-value=3e-09 Score=78.58 Aligned_cols=109 Identities=17% Similarity=0.309 Sum_probs=83.5
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV 85 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~ 85 (154)
.++.++.|++|++++|+++.|.. ..|+|+| ..+++++++-+++ +.+..++.. .|... .+..|.. ++ ..+++
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp-~~~~s~vl~~~~~--~~~a~l~v~~~g~~~--~f~srv~-~~-~~~~I 87 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQ-SYPQFLP-GCTGSRVLESTPG--QMTAAVDVSKAGISK--TFTTRNQ-LT-SNQSI 87 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHH-HHHHhCc-ccCeEEEEEecCC--EEEEEEEEeeCCccE--EEEEEEE-ec-CCCEE
Confidence 68889999999999999999996 6999999 6778888765432 334555555 44432 2445544 54 45589
Q ss_pred EEEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCC
Q 031700 86 TYKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASD 127 (154)
Q Consensus 86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~ 127 (154)
.+.+++|+ ++.+.+.+++.|.+ ++|.|++..+|+....
T Consensus 88 ~~~~~~Gp----F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~ 126 (158)
T PRK10724 88 LMQLVDGP----FKKLIGGWKFTPLSQEACRIEFHLDFEFTNK 126 (158)
T ss_pred EEEecCCC----hhhccceEEEEECCCCCEEEEEEEEEEEchH
Confidence 99999985 57899999999984 6799999999997664
No 22
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.11 E-value=5.5e-09 Score=73.43 Aligned_cols=102 Identities=24% Similarity=0.479 Sum_probs=75.1
Q ss_pred EcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEEEEEEec
Q 031700 14 VKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVTYKVIDG 92 (154)
Q Consensus 14 i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg 92 (154)
|++|+++||+++.|+. .+|+|+| .++++++++.+++ +..-.+... .+... . +..++... ...+ +.+..++|
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p-~~~~v~vl~~~~~--~~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~-~~~~~~~g 72 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFP-PVKEVRVLERDGD--GMRARWEVKFGGIKR-S-WTSRVTED-PPER-IRFEQISG 72 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCT-TEEEEEEEEEECC--EEEEEEEECTTTTCE-E-EEEEEEEE-CTTT-EEEESSET
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCC-CCceEEEEEeCCC--eEEEEEEEecCCEEE-E-EEEEEEEE-Eeee-eeeeecCC
Confidence 6899999999999996 6999999 7889999987542 333345555 44333 2 45665533 4444 88888777
Q ss_pred CcccceeEEEEEEEEeeCCC---CeEEEEEEEEEeCCC
Q 031700 93 DLLKYYKAFKGIVSVNPKGE---GSLVKWACEFEKASD 127 (154)
Q Consensus 93 ~~~~~~~~~~~t~~v~~~~~---~s~v~Wt~~~e~~~~ 127 (154)
+ ++.+.+++++.|.++ ||.++++.+|+....
T Consensus 73 ~----~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~ 106 (130)
T PF03364_consen 73 P----FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPP 106 (130)
T ss_dssp T----EEEEEEEEEEEEETTECCEEEEEEEEEEEEETS
T ss_pred C----chhcEEEEEEEECCCCcCCCEEEEEEEEEEecC
Confidence 5 589999999999965 888888888887554
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.98 E-value=3.7e-08 Score=71.05 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=72.4
Q ss_pred EEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCC-ceeee-eeEEEEeeeCCCcEEE
Q 031700 9 EVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS-PIVKV-STEKIENVDEANKVVT 86 (154)
Q Consensus 9 ~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~-~~~~~-~kErl~~~D~~~~~~~ 86 (154)
+.+++|++|+++||+++.|.. .++.|.| .+++.+.+++. . ..-.+++.-|. ... + .+=++..++.+.+.+.
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~p-g~~~~~~~~~~--~--~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 74 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIE-RVAPCLP-GASLTEVEGDD--E--YKGTVKVKLGPISAS-FKGTARLLEDDEAARRAV 74 (146)
T ss_pred CceEEecCCHHHHHHHhcCHH-HHHhcCC-CceeccccCCC--e--EEEEEEEEEccEEEE-EEEEEEEEeccCCCcEEE
Confidence 468899999999999999996 6999999 57777754322 1 22233433221 111 1 1224555554788888
Q ss_pred EEEEecCc-ccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC
Q 031700 87 YKVIDGDL-LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD 128 (154)
Q Consensus 87 Y~~ieg~~-~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~ 128 (154)
+..-..+. ...--....++++.|.+++|+|+|+.+++..+..
T Consensus 75 ~~~~g~~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l 117 (146)
T cd07823 75 LEATGKDARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKL 117 (146)
T ss_pred EEEEEecCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEh
Confidence 77543111 1111145667888887678999999999877653
No 24
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.88 E-value=1e-07 Score=67.88 Aligned_cols=136 Identities=13% Similarity=0.199 Sum_probs=83.8
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
.++.++.|+||+++||+++.|.. .+++|.|... .....|. |..-.+.+.++... ...-++..+ +.++.+.
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~~--~~~~~~~----~~~g~~~~~~~~~~--~~~~~i~~~-~p~~~l~ 71 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPE-HFGQWFGVKL--GPFVVGE----GATGEITYPGYEHG--VFPVTVVEV-DPPRRFS 71 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChh-hhhhcccccC--CCcccCC----cceeEEecCCCCcc--ceEEEEEEe-CCCcEEE
Confidence 57899999999999999999996 7999998532 1111121 12223444432111 144577777 4888889
Q ss_pred EEEEecCc-----ccceeEEEEEEEEeeCCCCeEEEEEEE-EEeCCCCCC--ChhhHHHHHHHHHHHHHHHHhh
Q 031700 87 YKVIDGDL-----LKYYKAFKGIVSVNPKGEGSLVKWACE-FEKASDDVP--DPSVIKDFALKNFQEVDDYILK 152 (154)
Q Consensus 87 Y~~ieg~~-----~~~~~~~~~t~~v~~~~~~s~v~Wt~~-~e~~~~~~~--~~~~~~~~~~~~~k~ie~~l~~ 152 (154)
|+...... ...-.....++++.+.+++|+|+++-. |...++... ......+.-..++..|++||.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~vt~~~~~~~~~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 72 FRWHPPAIDPGEDYSAEPSTLVEFTLEPIAGGTLLTVTESGFDALPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred EEecCCCcccccccCCCCceEEEEEEEecCCcEEEEEEEcCCCCCChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 98654320 001123457888999888899999876 432221110 1112234456888999998853
No 25
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.84 E-value=1.3e-07 Score=69.22 Aligned_cols=127 Identities=12% Similarity=0.153 Sum_probs=86.8
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
.++.++.|++|+++||+++.|.. .+++|.|. . .++. .+|...++++...... ....++.++| +++.+.
T Consensus 12 ~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~~-~------~~~~-~~G~~~~~~~~~~~~~--~~~~~v~e~~-p~~~l~ 79 (157)
T cd08899 12 TLRFERLLPAPIEDVWAALTDPE-RLARWFAP-G------TGDL-RVGGRVEFVMDDEEGP--NATGTILACE-PPRLLA 79 (157)
T ss_pred EEEEEEecCCCHHHHHHHHcCHH-HHHhhcCC-C------CCCc-ccCceEEEEecCCCCC--ccceEEEEEc-CCcEEE
Confidence 58899999999999999999996 79999983 2 1222 4666666666531111 1567778775 678899
Q ss_pred EEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhC
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKA 153 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~ 153 (154)
|+...++. ....++.+.+.++||+++.+.++.+... ......+.-..++..|.+||.+.
T Consensus 80 ~~~~~~~~-----~~~~~~~l~~~~~gT~v~~~~~~~~~~~---~~~~~~~GW~~~L~~Lk~~~e~~ 138 (157)
T cd08899 80 FTWGEGGG-----ESEVRFELAPEGDGTRLTLTHRLLDERF---GAGAVGAGWHLCLDVLEAALEGG 138 (157)
T ss_pred EEecCCCC-----CceEEEEEEEcCCCEEEEEEEeccCchh---hhhhhcccHHHHHHHHHHHHcCC
Confidence 98865441 2245777887777899999888875541 12233344567778888877543
No 26
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.79 E-value=3.6e-07 Score=64.24 Aligned_cols=133 Identities=10% Similarity=0.049 Sum_probs=83.2
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
+++.++.|+||+++||+++.|.. .+++|.++.. .+++. .+|..-.+...+.... .+.=++.+++ +++.+.
T Consensus 1 ~~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~~~-----~~~~~-~~G~~~~~~~~~~~~~--~~~~~v~~~~-~~~~l~ 70 (136)
T cd08893 1 KFVYVTYIRATPEKVWQALTDPE-FTRQYWGGTT-----VESDW-KVGSAFEYRRGDDGTV--DVEGEVLESD-PPRRLV 70 (136)
T ss_pred CeEEEEEecCCHHHHHHHHcCch-hhhheecccc-----cccCC-cCCCeEEEEeCCCccc--ccceEEEEec-CCCeEE
Confidence 47889999999999999999996 7999998522 13333 4555444544431111 1345666675 777788
Q ss_pred EEEEecCcc--cceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700 87 YKVIDGDLL--KYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 87 Y~~ieg~~~--~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 151 (154)
|+...+... ..-.....++.+.+.+++|+++.+.+..+.+. ............+++.|+++|-
T Consensus 71 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~t~l~~~~~~~~~~~--~~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 71 HTWRAVWDPEMAAEPPSRVTFEIEPVGDVVKLTVTHDGFPPGS--PTLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred EEEecCCCcccCCCCCEEEEEEEEecCCcEEEEEEecCCCCch--hHHHhhhcCHHHHHHHHHHHhc
Confidence 876543321 11224556788888877888877766543321 1122334456678888888873
No 27
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.71 E-value=3.2e-06 Score=60.68 Aligned_cols=138 Identities=12% Similarity=0.086 Sum_probs=83.1
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCc-ccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCcE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSH-DYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~-~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~~ 84 (154)
++.+..+++|+++||+++.|-. .+.+|+.. .--.+...+.+. .+|..-.+.+. +|.... ..=++.++| ++++
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~-~l~~W~~~~~~~~~~~~~~d~-~~Gg~~~~~~~~~~g~~~~--~~g~~~~~~-p~~~ 76 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPA-ARARWFVPSPDWTVLEDEFDF-RVGGREVSRGGPKGGPEIT--VEARYHDIV-PDER 76 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHH-HHHhcCCCCCCCceeeeEEec-CCCCEEEEEEECCCCCEEe--eeEEEEEec-CCce
Confidence 5667889999999999999985 68899853 111222223332 34444444443 454322 455777785 7778
Q ss_pred EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700 85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 151 (154)
|.|+...............++.+.+.+++|+++.+-..-..++. .......+--..++..|++||.
T Consensus 77 l~~t~~~~~~~~~~~~s~v~~~l~~~~~gT~l~~~~~~~~~~~~-~~~~~~~~GW~~~l~~L~~~l~ 142 (143)
T cd08900 77 IVYTYTMHIGGTLLSASLATVEFAPEGGGTRLTLTEQGAFLDGD-DDPAGREQGTAALLDNLAAELE 142 (143)
T ss_pred EEEEEeeccCCccccceEEEEEEEECCCCEEEEEEEEEeccccc-chhhhHHHHHHHHHHHHHHHHh
Confidence 88775321110111123468888888888999988776322221 1123344556778889988874
No 28
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.70 E-value=4.8e-07 Score=64.71 Aligned_cols=133 Identities=13% Similarity=0.199 Sum_probs=80.8
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccC-cccceEEEEcCCCCCCCcEEEEEE-c-CCCceeeeeeEEEEeeeCCCcE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFS-HDYKSIQVLEGDGKAPGSVRLITY-A-DGSPIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p-~~v~s~~~~eG~~~~~GsvR~~~~-~-~G~~~~~~~kErl~~~D~~~~~ 84 (154)
++.+..|++|+++||+++.+-. .+.+|++ +.+.... .+.+. .+|..-.+.+ . +|.... ..-++.+++ ++++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~-~l~~W~~p~~~~~~~-~~~d~-~~GG~~~~~~~~~~g~~~~--~~g~v~e~~-p~~~ 75 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPE-HLAQWWGPEGFTNTT-HEFDL-RPGGRWRFVMHGPDGTDYP--NRIVFLEIE-PPER 75 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHH-HHhhccCcCCCcceE-EEEEe-cCCCEEEEEEECCCCCEec--ceEEEEEEc-CCCE
Confidence 5678899999999999999985 6788863 3332211 22232 3444434433 2 454321 345778884 7888
Q ss_pred EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC-CCChhhHHHHHHHHHHHHHHHHh
Q 031700 85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD-VPDPSVIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~-~~~~~~~~~~~~~~~k~ie~~l~ 151 (154)
|.|+...++. ....++++.|.+++|+++.+..|.+...- ........+....++..|++||.
T Consensus 76 l~~t~~~~~~-----~~~v~~~~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 138 (139)
T cd08894 76 IVYDHGSGPP-----RFRLTVTFEEQGGKTRLTWRQVFPTAAERCEKIKFGAVEGNEQTLDRLAAYLA 138 (139)
T ss_pred EEEEeccCCC-----cEEEEEEEEECCCCEEEEEEEEcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHh
Confidence 9998754421 23468888888888999988765321100 00001122345678888888874
No 29
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.67 E-value=5.5e-07 Score=65.45 Aligned_cols=137 Identities=16% Similarity=0.251 Sum_probs=90.0
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC-CCceeeeeeEEEEeeeCCCcEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD-GSPIVKVSTEKIENVDEANKVV 85 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~-G~~~~~~~kErl~~~D~~~~~~ 85 (154)
.++.+..|++|+++||+.+.|.. .+..-+| .++|++. +|+. --++-++.+.. ...+. .+=++..+|++.+++
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe-~~a~ciP-G~qs~e~-~g~e--~~~~v~l~ig~l~~~~~--g~~~~~~v~~~~~~~ 74 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPE-QVAACIP-GVQSVET-NGDE--YTAKVKLKIGPLKGTFS--GRVRFVNVDEPPRSI 74 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHH-HHHhhcC-Ccceeee-cCCe--EEEEEEEeecceeEEEE--EEEEEccccCCCcEE
Confidence 46778999999999999999996 6889999 6999984 5652 11122222221 11221 345667778899999
Q ss_pred EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCC-hhhHH----HHHHHHHHHHHHHHh
Q 031700 86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPD-PSVIK----DFALKNFQEVDDYIL 151 (154)
Q Consensus 86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~-~~~~~----~~~~~~~k~ie~~l~ 151 (154)
+.+.-.|. +..+-...+.+++.|.+++|++.|.++-+-.+-...- +..+. .....+++.|.++|.
T Consensus 75 ~i~g~G~~-~~g~~~~~~~v~l~~~g~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli~~~~~~l~~~l~ 144 (146)
T COG3427 75 TINGSGGG-AAGFADGTVDVQLEPSGEGTRVNWFADANVGGKLAQLGSRLIDSVARKLINRFFDCLSSELA 144 (146)
T ss_pred EEEeeccc-ccceeeeeeEEEEEEcCCCcEEEEEEEccccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88876533 3346677788999999878999999988765532111 22222 334456666666654
No 30
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=1.9e-06 Score=61.10 Aligned_cols=128 Identities=20% Similarity=0.212 Sum_probs=82.1
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccce--EEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCC
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKS--IQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEAN 82 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s--~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~ 82 (154)
+++.++.|+||+++||+++.|-. .+.+|++. ... +...+.+. .+|..-.+.+. +|... ..+.-++.++ +++
T Consensus 1 ~~~~~~~~~ap~e~Vw~a~td~e-~~~~W~~~-~~~~~~~~~~~d~-~~GG~~~~~~~~~~g~~~-~~~~g~~~ei-~p~ 75 (133)
T cd08897 1 KITVETTVDAPIEKVWEAWTTPE-HITKWNFA-SDDWHCPSAENDL-RVGGKFSYRMEAKDGSMG-FDFEGTYTEV-EPH 75 (133)
T ss_pred CEEEEEEeCCCHHHHHHHhCCHH-HHhhCCCC-CCCcccceeeecC-CcCCEEEEEEEcCCCCcc-cccceEEEEE-CCC
Confidence 57889999999999999999985 78999642 111 11122333 45555555442 44320 0134566778 488
Q ss_pred cEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700 83 KVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 83 ~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 151 (154)
++|.|+..++ ...++.+.|.++||+++-+ +.+.+.. ..+...+--..++..|++||.
T Consensus 76 ~~l~~~~~~~--------~~v~~~l~~~~~gT~l~l~--~~~~~~~--~~~~~~~GW~~~l~~L~~~le 132 (133)
T cd08897 76 KLIEYTMEDG--------REVEVEFTEEGDGTKVVET--FDAENEN--PVEMQRQGWQAILDNFKKYVE 132 (133)
T ss_pred CEEEEEcCCC--------CEEEEEEEECCCCEEEEEE--ECCCCCC--cHHHHHHHHHHHHHHHHHHhh
Confidence 8899986432 2468889998888998865 4443221 233444556788899999884
No 31
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.67 E-value=3.5e-06 Score=60.72 Aligned_cols=134 Identities=12% Similarity=0.062 Sum_probs=82.5
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccC-cccceEEEEcCCCCCCCcEEEEEE--cC-------CCceeeeeeEEEEe
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFS-HDYKSIQVLEGDGKAPGSVRLITY--AD-------GSPIVKVSTEKIEN 77 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p-~~v~s~~~~eG~~~~~GsvR~~~~--~~-------G~~~~~~~kErl~~ 77 (154)
++.+..|+||+++||+++.|.. .+.+|.+ +.+ .+...+.+. .+|..-.+.+ .+ |... .+.=++.+
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~-~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~~~~g~~~g~~~--~~~g~v~~ 76 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPD-ALAKWLPPDGM-TGTVHEFDA-REGGGFRMSLTYFDPSVGKTTGNTD--VFGGRFLE 76 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHH-HHhhcCCCCCe-EeEEEEEec-ccCCeEEEEEEcCCccccccCCcEe--eeEEEEEE
Confidence 5678889999999999999996 6889875 222 222222332 3343333333 23 2222 13446777
Q ss_pred eeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 031700 78 VDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 78 ~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~ 151 (154)
++ .+++|.|+..-.+.... .....++.+.+.+++|+++++...-+.. .......+--..++..|++||-
T Consensus 77 v~-p~~~i~~~~~~~~~~~~-~~~~v~~~~~~~~~~T~lt~~~~~~~~~---~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 77 LV-PNERIVYTDVFDDPSLS-GEMTMTWTLSPVSGGTDVTIVQSGIPDG---IPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred Ec-CCCEEEEEEEecCCCCC-ceEEEEEEEEecCCCEEEEEEEeCCCch---hhhhHHHHHHHHHHHHHHHHhc
Confidence 85 77788888542221111 2336788888888889999988753221 1233445666788899999884
No 32
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=98.65 E-value=2.9e-07 Score=68.80 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=83.8
Q ss_pred ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCc
Q 031700 6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANK 83 (154)
Q Consensus 6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~ 83 (154)
-.++.+++|+.|++.||+..+|+. .+|.|+. ++.|+++.+-. -.+|+.. .|..+. ++-+|+ -|..+.
T Consensus 70 i~v~~~V~I~kPae~vy~~W~dLe-~lP~~Mk-hl~SVkVlddk------rSrW~~~ap~g~~v~--Wea~it-~d~~~e 138 (217)
T COG5637 70 IEVEVQVTIDKPAEQVYAYWRDLE-NLPLWMK-HLDSVKVLDDK------RSRWKANAPLGLEVE--WEAEIT-KDIPGE 138 (217)
T ss_pred eEEEEEEEeCChHHHHHHHHHhhh-hhhHHHH-hhceeeccCCC------ccceeEcCCCCceEE--Eeehhh-ccCCCc
Confidence 368999999999999999999996 6999998 89999987643 1466665 444543 555655 568999
Q ss_pred EEEEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700 84 VVTYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASD 127 (154)
Q Consensus 84 ~~~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~ 127 (154)
.|.+.-++|.-.+ -.+.++|.+. +..|+|+-+++|.+-++
T Consensus 139 ~I~W~Sl~Ga~v~----NsG~VrF~~~pg~~t~V~v~lsY~~Pgg 179 (217)
T COG5637 139 RIQWESLPGARVE----NSGAVRFYDAPGDSTEVKVTLSYRPPGG 179 (217)
T ss_pred EEeeecCCCCcCC----CCccEEeeeCCCCceEEEEEEEecCCcc
Confidence 9999999995432 1256778777 66789999999998776
No 33
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.63 E-value=1.3e-06 Score=62.89 Aligned_cols=136 Identities=11% Similarity=0.088 Sum_probs=83.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCcEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANKVV 85 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~~~ 85 (154)
++.+..+++|+++||+++.+-. .+.+|+...--.+...+.|. .+|..-.+.+. +|.... +.=++.++| ++++|
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe-~l~~W~~p~~~~~~~~~~d~-r~GG~~~~~~~~~~g~~~~--~~g~~~ei~-p~~~l 76 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPE-LVKRWWGPRGLTMTVCECDI-RVGGSYRYVHRAPDGEEMG--FHGVYHEVT-PPERI 76 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHH-HHhhccCCCCCcceEEEEec-cCCCEEEEEEECCCCCEec--ceEEEEEEc-CCCEE
Confidence 5678889999999999999885 68888764322333334443 45555455543 443321 455677785 67777
Q ss_pred EEEEE-ecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC-CCChhhHHHHHHHHHHHHHHHHh
Q 031700 86 TYKVI-DGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD-VPDPSVIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 86 ~Y~~i-eg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~-~~~~~~~~~~~~~~~k~ie~~l~ 151 (154)
.|+-- ++.. . .....++++.+.+++|+++.+..|...... ...-....+.-..++.+|++||.
T Consensus 77 ~~t~~~~~~~-~--~~s~v~~~l~~~~~gT~l~l~~~~~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 77 VQTEEFEGLP-D--GVALETVTFTELGGRTRLTATSRYPSKEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EEEeEecCCC-C--CceEEEEEEEECCCCEEEEEEEEeCCHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 77743 2221 1 234568888888888999988666321110 00011223456788999999985
No 34
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.59 E-value=1.6e-06 Score=62.56 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=79.0
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcc-cceEEEEcCCCCCCCcEEEEEEc--CCCceeeeeeEEEEeeeCCCcE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHD-YKSIQVLEGDGKAPGSVRLITYA--DGSPIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~-v~s~~~~eG~~~~~GsvR~~~~~--~G~~~~~~~kErl~~~D~~~~~ 84 (154)
+..+..|+||+++||+++.+-. .+.+|++.. . ++...+.+. .+|..-++.+. +|.... ..=++.++| +.++
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe-~~~~W~~p~~~-~~~~~~~d~-~~GG~~~~~~~~~~g~~~~--~~g~v~~i~-p~~~ 75 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPE-LLKQWFCPKPW-TTEVAELDL-RPGGAFRTVMRGPDGEEFP--NPGCFLEVV-PGER 75 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHH-HHhccCCCCCc-cceEEEEEe-ecCcEEEEEEECCCCCEec--ceEEEEEEe-CCCE
Confidence 5678899999999999999885 678887522 1 111122222 33334344442 454321 456788885 6777
Q ss_pred EEEEEE--ecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhh-----HHHHHHHHHHHHHHHHh
Q 031700 85 VTYKVI--DGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSV-----IKDFALKNFQEVDDYIL 151 (154)
Q Consensus 85 ~~Y~~i--eg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~-----~~~~~~~~~k~ie~~l~ 151 (154)
|.|+-. ++.....-.....++++.+.++||+++.+..+.... ..+. ..+-...++.+|++||.
T Consensus 76 l~~t~~~~~~~~~~~~~~~~v~~~~~~~~~gT~Ltl~~~~~~~~----~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 76 LVFTDALTPGWRPAEKPFMTAIITFEDEGGGTRYTARARHWTEA----DRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEEEeecCCcCCCCCCcEEEEEEEEecCCcEEEEEEEEeCCHH----HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 888732 221111001145688899988899998875542110 0111 12446788899999885
No 35
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=98.43 E-value=1.3e-05 Score=57.99 Aligned_cols=132 Identities=10% Similarity=-0.011 Sum_probs=77.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcc-------cceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeC
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHD-------YKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~-------v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~ 80 (154)
++.++.|+||+++||+++.+ .+.+|.+.. ...|++ +- .+|..-.+...+|... ..=++.+++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~---~l~~W~~p~~~~~~~~~~~~~~-d~---~~GG~~~~~~~~g~~~---~~g~v~~v~- 70 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE---GFGAWWPPEYHFVFSPGAEVVF-EP---RAGGRWYEIGEDGTEC---EWGTVLAWE- 70 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh---chhhccCCCcccccCCCccEEE-cc---cCCcEEEEecCCCcEe---ceEEEEEEc-
Confidence 67899999999999999998 266776422 133332 21 2333323322344432 345777785
Q ss_pred CCcEEEEEEEecC-c--ccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCC-CCChh---hHHHHHHHHHHHHHHHHh
Q 031700 81 ANKVVTYKVIDGD-L--LKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDD-VPDPS---VIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 81 ~~~~~~Y~~ieg~-~--~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~-~~~~~---~~~~~~~~~~k~ie~~l~ 151 (154)
+.++|.|+-.-+. . .... .-..|+++.+.+ ++|+++.+-..-+.... ..... ...+.-..++.+|++||.
T Consensus 71 p~~~l~~tw~~~~~~~~~~~~-~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~ 148 (149)
T cd08891 71 PPSRLVFTWQINADWRPDPDK-ASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAE 148 (149)
T ss_pred CCCEEEEEeccCCCcCcCCCC-ceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhc
Confidence 7777888754221 1 1111 235788999987 89999988776543221 00111 112334567888888874
No 36
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.39 E-value=4.3e-05 Score=54.97 Aligned_cols=105 Identities=15% Similarity=0.306 Sum_probs=63.5
Q ss_pred EEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCC---ceeeeeeEEEEeeeCCCcE-EE
Q 031700 11 ELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGS---PIVKVSTEKIENVDEANKV-VT 86 (154)
Q Consensus 11 ~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~---~~~~~~kErl~~~D~~~~~-~~ 86 (154)
+.+|++|+++||+++.|.. .+..-+| .+++.+.++ +. --+ .++..=|. .+. .+=++..+|++++. +.
T Consensus 2 s~~v~a~~~~vw~~l~D~~-~l~~ciP-G~~~~e~~~-~~-~~~---~~~v~vG~i~~~~~--g~~~~~~~~~~~~~~~~ 72 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPE-NLARCIP-GVESIEKVG-DE-YKG---KVKVKVGPIKGTFD--GEVRITEIDPPESYTLE 72 (140)
T ss_dssp EEEECS-HHHHHHHHT-HH-HHHHHST-TEEEEEEEC-TE-EEE---EEEEESCCCEEEEE--EEEEEEEEETTTEEEEE
T ss_pred cEEecCCHHHHHHHhcCHH-HHHhhCC-CcEEeeecC-cE-EEE---EEEEEeccEEEEEE--EEEEEEEcCCCcceEee
Confidence 6789999999999999996 6889999 688888764 31 111 12222221 121 34456667766665 33
Q ss_pred EEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASD 127 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~ 127 (154)
.+.-+.. .-.+..+.+++... +++|+|.|+.+++..+.
T Consensus 73 ~~g~g~~---~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~G~ 111 (140)
T PF06240_consen 73 FEGRGRG---GGSSASANITLSLEDDGGTRVTWSADVEVGGP 111 (140)
T ss_dssp EEEEECT---CCEEEEEEEEEEECCCTCEEEEEEEEEEEECH
T ss_pred eeccCCc---cceEEEEEEEEEcCCCCCcEEEEEEEEEEccC
Confidence 3333222 12344455666554 34599999999997765
No 37
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.24 E-value=0.00016 Score=54.40 Aligned_cols=140 Identities=16% Similarity=0.204 Sum_probs=83.1
Q ss_pred ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCce--eeeeeEEEEeeeCCCc
Q 031700 6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPI--VKVSTEKIENVDEANK 83 (154)
Q Consensus 6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~--~~~~kErl~~~D~~~~ 83 (154)
-.+..+..|++|++++|+++.|.. ..|+|.| .+.+++++|-.++ --.+-...+....+. ..++-.+-...+.++.
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~-~~~~~~vie~~~~-~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~ 117 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTE-SYPQWMP-NCKESRVLKRTDD-NERSVYTVIDLPWPVKDRDMVLRSTTEQDADDG 117 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHh-hcceEEEeecCCC-CcEEEEEEEecccccCCceEEEEEEEEEcCCCC
Confidence 357888899999999999999996 6899999 7899999885431 123333333311110 0112222112222244
Q ss_pred EEEEEEEecCc--c--c---ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHHH
Q 031700 84 VVTYKVIDGDL--L--K---YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDDY 149 (154)
Q Consensus 84 ~~~Y~~ieg~~--~--~---~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~ 149 (154)
.+...+.+.+. . . ....+.+.+.+.|. +++|.|++...++|.+. .|..- -.+..+..+++++++.
T Consensus 118 ~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~-iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 118 SVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS-IPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred EEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC-CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 55444444321 1 1 24667788889998 56799999999998754 32211 1123344556666554
No 38
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=98.19 E-value=3.6e-05 Score=55.77 Aligned_cols=110 Identities=21% Similarity=0.325 Sum_probs=82.1
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVV 85 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~ 85 (154)
.++.+.-++.+|+++++++.|.. ..|+++| .-+..++.+.+. ..-+-.++.. .|-. .+..-|.. +++..+.|
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP-~C~~s~v~~~~~--~~l~A~l~V~~k~i~--e~F~Trv~-~~~~~~~I 75 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVE-SYPEFLP-WCSASRVLERNE--RELIAELDVGFKGIR--ETFTTRVT-LKPTARSI 75 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHH-hCchhcc-ccccceEeccCc--ceeEEEEEEEhhhee--eeeeeeee-ecCchhhh
Confidence 57889999999999999999995 7999999 455666677653 3455566665 4432 22444544 45566677
Q ss_pred EEEEEecCcccceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700 86 TYKVIDGDLLKYYKAFKGIVSVNPK-GEGSLVKWACEFEKASD 127 (154)
Q Consensus 86 ~Y~~ieg~~~~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~ 127 (154)
.-.+++|+ ++...++|++.|. +++|.|+..++|+..+.
T Consensus 76 ~~~l~~GP----Fk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ 114 (146)
T COG2867 76 DMKLIDGP----FKYLKGGWQFTPLSEDACKVEFFLDFEFKSR 114 (146)
T ss_pred hhhhhcCC----hhhhcCceEEEECCCCceEEEEEEEeeehhH
Confidence 77777776 4777889999997 68899999999998765
No 39
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=98.17 E-value=4.2e-05 Score=52.79 Aligned_cols=122 Identities=11% Similarity=0.164 Sum_probs=73.4
Q ss_pred cCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEEEEecCc
Q 031700 15 KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDL 94 (154)
Q Consensus 15 ~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg~~ 94 (154)
+||+++||+++.+.. .+.+|.+......+. .+|..-++.-.+|.... ..=++++++ .++.|.|+.--++.
T Consensus 1 ~ap~e~Vw~a~t~~~-~~~~W~~~~~~~~~~------~~Gg~~~~~~~~g~~~~--~~~~v~~~~-p~~~i~~~~~~~~~ 70 (124)
T PF08327_consen 1 DAPPERVWEALTDPE-GLAQWFTTSEAEMDF------RPGGSFRFMDPDGGEFG--FDGTVLEVE-PPERIVFTWRMPDD 70 (124)
T ss_dssp SSSHHHHHHHHHSHH-HHHHHSEEEEEEEEC------STTEEEEEEETTSEEEE--EEEEEEEEE-TTTEEEEEEEEETS
T ss_pred CcCHHHHHHHHCCHh-HHhhccCCCcceeee------ecCCEEEEEecCCCCce--eeEEEEEEe-CCEEEEEEEEccCC
Confidence 689999999999985 688993312222222 33443333225665432 344588885 66778888654432
Q ss_pred ccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhh-HHHHHHHHHHHHHHHH
Q 031700 95 LKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSV-IKDFALKNFQEVDDYI 150 (154)
Q Consensus 95 ~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~-~~~~~~~~~k~ie~~l 150 (154)
.. -.....++.+.+.+++|+++-+.+-.+.... ... .......++.+|++||
T Consensus 71 ~~-~~~~~v~~~~~~~~~~T~l~~~~~~~~~~~~---~~~~~~~gw~~~l~~L~~~l 123 (124)
T PF08327_consen 71 PD-GPESRVTFEFEEEGGGTRLTLTHSGFPDDDE---EEEGMEQGWEQMLDRLKAYL 123 (124)
T ss_dssp SS-CEEEEEEEEEEEETTEEEEEEEEEEEHSHHH---HHHCHHHHHHHHHHHHHHHH
T ss_pred CC-CCceEEEEEEEEcCCcEEEEEEEEcCCccHH---HHHHHHHHHHHHHHHHHHHh
Confidence 21 2344678888887778988877733322210 111 4455677788888887
No 40
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.16 E-value=4.2e-05 Score=54.51 Aligned_cols=122 Identities=10% Similarity=0.037 Sum_probs=76.3
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCceeeeeeEEEEeeeCCCcEEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
+..++.|+||+++||+++.+-. .+.+|.+. -.+.++. +|..-.+.+. .|.. +.=++.++ ++.+++.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~-~l~~W~~~-~~~~~~~------~Gg~~~~~~~~~~~~----~~g~~~~~-~p~~~l~ 68 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPE-ITTKFWFT-GSSGRLE------EGKTVTWDWEMYGAS----VPVNVLEI-EPNKRIV 68 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHH-Hhcccccc-CCCcccc------CCCEEEEEEEccCCc----eEEEEEEE-cCCCEEE
Confidence 5688999999999999999885 68887553 2233432 3334345555 2222 23466777 4778888
Q ss_pred EEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCChhhH------HHHHHHHHHHHHHHHh
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDPSVI------KDFALKNFQEVDDYIL 151 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~~~~------~~~~~~~~k~ie~~l~ 151 (154)
|+.-.++. . -..++++.+.+ ++|+++.+-..-+... ++.. ......++..|++||.
T Consensus 69 ~~w~~~~~---~--s~v~~~l~~~~~ggT~ltl~~~~~~~~~----~~~~~~~~~~~~GW~~~L~~L~~~le 131 (136)
T cd08901 69 IEWGDPGE---P--TTVEWTFEELDDGRTFVTITESGFPGTD----DEGLKQALGSTEGWTLVLAGLKAYLE 131 (136)
T ss_pred EEecCCCC---C--EEEEEEEEECCCCcEEEEEEECCCCCCc----HHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 88654321 2 23688888886 7899887755332221 1111 1234577888888875
No 41
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=98.10 E-value=0.00025 Score=49.92 Aligned_cols=122 Identities=10% Similarity=0.061 Sum_probs=74.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEE
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTY 87 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y 87 (154)
++.+..|+||+++||+++.+-. .+.+|+. ...+.+...| |..+ +.+|. +.=++.+++ +++++.|
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e-~l~~W~~-~~~~~d~~~G-----G~~~---~~~g~-----~~g~~~~i~-p~~~l~~ 65 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEE-RVQAFTR-SPAKVDAKVG-----GKFS---LFGGN-----ITGEFVELV-PGKKIVQ 65 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHH-HHHhhcC-CCceecCCCC-----CEEE---EeCCc-----eEEEEEEEc-CCCEEEE
Confidence 5678899999999999999885 6889985 2334443333 3333 33453 234566775 6777777
Q ss_pred EEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChhhHHHHHH-HHHHHHHHHH
Q 031700 88 KVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPSVIKDFAL-KNFQEVDDYI 150 (154)
Q Consensus 88 ~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~~~~~~~~-~~~k~ie~~l 150 (154)
+---.+.... ..-..++.+.+.+++|+++.+-..-+.. ..+...+--. .++..|.++|
T Consensus 66 ~w~~~~~~~~-~~s~v~~~l~~~~~gT~ltl~~~g~~~~----~~~~~~~GW~~~~~~~l~~~~ 124 (126)
T cd08892 66 KWRFKSWPEG-HYSTVTLTFTEKDDETELKLTQTGVPAG----EEERTREGWERYYFESIKQTF 124 (126)
T ss_pred EEEcCCCCCC-CcEEEEEEEEECCCCEEEEEEEECCCCc----hHHHHHhhHHHHHHHHHHHHh
Confidence 6542221111 2234788888887789988877655432 1233333333 3677777765
No 42
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00022 Score=51.92 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=78.7
Q ss_pred cceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcE
Q 031700 5 GGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKV 84 (154)
Q Consensus 5 ~~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~ 84 (154)
...++.+..|++|+++||+++.|-. ++.+|+...-.+.++.-| .+....+...+|... ...-++.++ ..+++
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~~~~~~~d~r~g----g~~~~~~~~~~g~~~--~~~~~~~~v-~p~~r 78 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFMPGGAEFDARTG----GGERVRFRGPDGPVH--SFEGEYLEV-VPPER 78 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcCCCCCccceecC----CceEEeeecCCCCee--ecceEEEEE-cCCcE
Confidence 4579999999999999999999985 799998621111121112 234445555565431 256677778 47787
Q ss_pred EEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCChh---hH--HHHHHHHHHHHHHHHh
Q 031700 85 VTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDPS---VI--KDFALKNFQEVDDYIL 151 (154)
Q Consensus 85 ~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~---~~--~~~~~~~~k~ie~~l~ 151 (154)
|.|+-.-.+.......-..++++.+.+.|. .++..........+... .. .+...+++.+++++|.
T Consensus 79 Iv~tw~~~~~~~~~~~~~v~~~l~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 79 IVFTWDFDEDGEPFLKSLVTITLTPEDDGG--TTTLVRTSGGGFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEEEeccCCCCCcccCceEEEEEEEecCCC--cEEEEEEeeccccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 877765543322222334677777763221 22222222222111111 11 4557788888888874
No 43
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=97.36 E-value=0.0058 Score=43.44 Aligned_cols=119 Identities=9% Similarity=0.053 Sum_probs=66.6
Q ss_pred EcCCHHHHHHHHhccCCCCccc-cCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEEEEec
Q 031700 14 VKSSADKFWGSIRDSTTLFPKA-FSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDG 92 (154)
Q Consensus 14 i~a~~~~vW~~~~d~~~~l~~~-~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg 92 (154)
++||+++||+++.|-. .+.+| .+ ....+++ .+|..-+ +..|. +.=++.++| ++++|.|+---.
T Consensus 1 f~ap~e~Vw~A~Tdp~-~l~~w~~~-~~~~~d~------~~GG~f~--~~~~~-----~~G~~~ev~-pp~rlv~tw~~~ 64 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAY-TLTRLSLG-SPAEMDA------KVGGKFS--LFNGS-----VEGEFTELE-KPKKIVQKWRFR 64 (132)
T ss_pred CCCCHHHHHHHHcCHH-HHHHHhcC-CCccccC------CcCCEEE--EecCc-----eEEEEEEEc-CCCEEEEEEecC
Confidence 4799999999999885 67788 43 2222232 2333322 22332 234666675 666677665322
Q ss_pred Ccc-cceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCC--C-CChhhHHHHHHH-HHHHHHHHH
Q 031700 93 DLL-KYYKAFKGIVSVNPK-GEGSLVKWACEFEKASDD--V-PDPSVIKDFALK-NFQEVDDYI 150 (154)
Q Consensus 93 ~~~-~~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~--~-~~~~~~~~~~~~-~~k~ie~~l 150 (154)
+.. ..++ ..|+++.+. +++|+++.+..--+..+. . ...+...+--.+ ++..|++||
T Consensus 65 ~~~~~~~s--~vt~~~~~~~~g~T~lt~~~~g~~~~~~~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 65 DWEEDVYS--KVTIEFRAVEEDHTELKLTQTGIPSLDKFGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCCCCCce--EEEEEEEeCCCCcEEEEEEEecCccccccCCCchhhHHHhChHHHHHHHHHHHh
Confidence 211 1122 478899987 468998888773322221 0 112233344455 588888876
No 44
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.27 E-value=0.037 Score=42.57 Aligned_cols=120 Identities=12% Similarity=0.095 Sum_probs=75.1
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CC--CceeeeeeEEEEeeeCCC
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DG--SPIVKVSTEKIENVDEAN 82 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G--~~~~~~~kErl~~~D~~~ 82 (154)
+..+.+|++|+++||+++.|.. ..++|.+ .++++++++--+... .+-++.+. .. ... .++--+-...++..
T Consensus 47 ~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~-~~~~~~vl~~~~~d~-~i~y~~~~~Pwp~~~~~R-DfV~l~~~~~~~~~ 122 (205)
T cd08874 47 FLGAGVIKAPLATVWKAVKDPR-TRFLYDT-MIKTARIHKTFTEDI-CLVYLVHETPLCLLKQPR-DFCCLQVEAKEGEL 122 (205)
T ss_pred EEEEEEEcCCHHHHHHHHhCcc-hhhhhHH-hhhheeeeeecCCCe-EEEEEEecCCCCCCCCCC-eEEEEEEEEECCCc
Confidence 5567889999999999999996 6899999 899999987432222 33333332 22 210 11222222222333
Q ss_pred cEEEEEEEec-Cc--cc----ceeEEEEEEEEeeC---C-CCeEEEEEEEEEeCCCCCCC
Q 031700 83 KVVTYKVIDG-DL--LK----YYKAFKGIVSVNPK---G-EGSLVKWACEFEKASDDVPD 131 (154)
Q Consensus 83 ~~~~Y~~ieg-~~--~~----~~~~~~~t~~v~~~---~-~~s~v~Wt~~~e~~~~~~~~ 131 (154)
..+.-.-++- .. .. ....+.+-+.+.|. + +.|.|++.+..+|.++..|.
T Consensus 123 ~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 123 SVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred EEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 3333322322 11 11 25678888999998 5 46999999999999766654
No 45
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=97.13 E-value=0.021 Score=41.82 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=43.1
Q ss_pred EEEEEEEcCC--------HHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeee
Q 031700 8 LEVELEVKSS--------ADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVD 79 (154)
Q Consensus 8 ~~~~~~i~a~--------~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D 79 (154)
++..+.||-| .++||+-+..-.+.-..+.| .|.+|++++-. +..-.|.++| |... ++|++. +.
T Consensus 2 ~~htvpIN~p~~~~~~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~--~~~~~R~v~f--g~~~---v~E~v~-~~ 72 (149)
T PF08982_consen 2 FEHTVPINPPGASLPVLTREQLWRGLVLKARNPQLFVP-GIDSCEVLSES--DTVLTREVTF--GGAT---VRERVT-LY 72 (149)
T ss_dssp EEEEEE------------HHHHHHHHHHHHH-GGGT-T-T--EEEEEEE---SSEEEEEEEE--TTEE---EEEEEE-EE
T ss_pred ccEEEecCCCcccCCccCHHHHHHHHHHHHhChhhCcc-ccCeEEEEecC--CCeEEEEEEE--CCcE---EEEEEE-Ee
Confidence 4556666554 45799998544444557888 89999999754 4578899999 3322 899987 43
Q ss_pred CCCcEEEE
Q 031700 80 EANKVVTY 87 (154)
Q Consensus 80 ~~~~~~~Y 87 (154)
+..++.|
T Consensus 73 -~~~~V~f 79 (149)
T PF08982_consen 73 -PPERVDF 79 (149)
T ss_dssp -TTTEEEE
T ss_pred -CCcEEEE
Confidence 5667888
No 46
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.08 E-value=0.096 Score=41.17 Aligned_cols=142 Identities=11% Similarity=0.105 Sum_probs=88.8
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-C--CCceeeeeeEEEEe--eeCCC
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-D--GSPIVKVSTEKIEN--VDEAN 82 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~--G~~~~~~~kErl~~--~D~~~ 82 (154)
+..+..+++|++++++++.|.. ..++|.+ ...++++++--+...+ +-++.++ + -+.. .++--+-.. .++.+
T Consensus 79 fk~e~~vd~s~~~v~dlL~D~~-~R~~WD~-~~~e~evI~~id~d~~-iyy~~~p~PwPvk~R-DfV~~~s~~~~~~~~~ 154 (235)
T cd08873 79 FCVELKVQTCASDAFDLLSDPF-KRPEWDP-HGRSCEEVKRVGEDDG-IYHTTMPSLTSEKPN-DFVLLVSRRKPATDGD 154 (235)
T ss_pred EEEEEEecCCHHHHHHHHhCcc-hhhhhhh-cccEEEEEEEeCCCcE-EEEEEcCCCCCCCCc-eEEEEEEEEeccCCCC
Confidence 6788889999999999999996 6899998 7889999873221223 3334333 1 1210 112111111 12212
Q ss_pred -cEEEEEEEe-cCc-c-c---ceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCC--CCChhhHHHHHHHHHHHHHHHHhh
Q 031700 83 -KVVTYKVID-GDL-L-K---YYKAFKGIVSVNPKG-EGSLVKWACEFEKASDD--VPDPSVIKDFALKNFQEVDDYILK 152 (154)
Q Consensus 83 -~~~~Y~~ie-g~~-~-~---~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~--~~~~~~~~~~~~~~~k~ie~~l~~ 152 (154)
..+...-+. ... . . ....+.+-+.+.|.+ ++|.|++....+|.--. +.+...+-..+...|+..+.||..
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~dPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETNPKLLSYVTCNLAGLSALYCRTFHCCEQFLVT 234 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcCCCccceeeecchhhhHHHHHHHHHHHHHhcc
Confidence 333333333 211 1 1 367888999999994 67999999998877432 223445556677788888888875
Q ss_pred C
Q 031700 153 A 153 (154)
Q Consensus 153 ~ 153 (154)
|
T Consensus 235 ~ 235 (235)
T cd08873 235 N 235 (235)
T ss_pred C
Confidence 4
No 47
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=97.02 E-value=0.067 Score=38.83 Aligned_cols=118 Identities=13% Similarity=0.252 Sum_probs=70.3
Q ss_pred EEEEEEEcC-------CHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeC
Q 031700 8 LEVELEVKS-------SADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDE 80 (154)
Q Consensus 8 ~~~~~~i~a-------~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~ 80 (154)
++..++||- ..+++|.-+---...-..+.| .+.+|++++-++ .--.|.++|+.+ . ++|++. + .
T Consensus 2 ~~~tvpIN~p~~~p~LTr~QlW~GL~~kar~p~~Fvp-~i~~c~Vl~e~~--~~l~Rel~f~~~-~----v~e~vt-~-~ 71 (141)
T cd08863 2 FEHTVPINDPGNIPTLTRAQLWRGLVLRAREPQLFVP-GLDRCEVLSESG--TVLERELTFGPA-K----IRETVT-L-E 71 (141)
T ss_pred ccEEEecCCCCCCCccCHHHHHhHHHhhhCCchhccc-ccceEEEEecCC--CEEEEEEEECCc-e----EEEEEE-e-c
Confidence 344555554 357999998433344456778 799999998653 246699999764 2 789977 5 3
Q ss_pred CCcEEEEEEEe-cCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCCCCh--hhHHHHHHHHHH
Q 031700 81 ANKVVTYKVID-GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDVPDP--SVIKDFALKNFQ 144 (154)
Q Consensus 81 ~~~~~~Y~~ie-g~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~~~~--~~~~~~~~~~~k 144 (154)
...++.|.+-. |+ +. ++.+....+| .+-.++.|+....+..++ ..+.+...++.+
T Consensus 72 ~~~~v~f~~~~~g~------~l--~~~iee~~~g-~L~lrf~ye~~~p~~~~~e~~~~~~~~~~a~~ 129 (141)
T cd08863 72 PPSRVHFLQADAGG------TL--TNTIEEPEDG-ALYLRFVYETTLPEVAEEEAKAYQEIVKQAYK 129 (141)
T ss_pred CCcEEEEEecCCCC------eE--EEEeccCCCC-cEEEEEEEEecCCCcCchHHHHHHHHHHHHHH
Confidence 67788888876 32 21 2222221223 356677777665543322 244444444443
No 48
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.64 E-value=0.16 Score=37.20 Aligned_cols=111 Identities=19% Similarity=0.313 Sum_probs=64.5
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCC--ccccCc---ccceEEEEcCCCCCCCcEEEEE-Ec-CC----------Cceeee
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLF--PKAFSH---DYKSIQVLEGDGKAPGSVRLIT-YA-DG----------SPIVKV 70 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l--~~~~p~---~v~s~~~~eG~~~~~GsvR~~~-~~-~G----------~~~~~~ 70 (154)
++.++++++|+++||+++.|-.-.. -+-+.. .+.+++ .+|+ + -+++... ++ +. ....
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~-~~~~--g-~~v~~~~~v~~~~lP~~~~k~v~~~l~-- 74 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFE-VDGD--G-VRVTVRQTVPADKLPSAARKFVGGDLR-- 74 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEE-EcCC--e-EEEEEEEecChhhCCHHHHHhcCCCeE--
Confidence 4678899999999999997542111 111221 233333 2233 2 1111111 11 11 1111
Q ss_pred eeEEEEee---eCCCcEEEEEEEe-cCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCCC
Q 031700 71 STEKIENV---DEANKVVTYKVID-GDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDDV 129 (154)
Q Consensus 71 ~kErl~~~---D~~~~~~~Y~~ie-g~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~~ 129 (154)
+ +|-+.+ ++..++-+|++-- |.+ -+..+++.+.|.+++|++.++.+.+..-+..
T Consensus 75 v-~~~e~w~~~~~g~~~g~~~~~~~G~P----~~~~G~~~L~~~~~gt~~~~~g~v~v~VPlv 132 (159)
T PF10698_consen 75 V-TRTETWTPLDDGRRTGTFTVSIPGAP----VSISGTMRLRPDGGGTRLTVEGEVKVKVPLV 132 (159)
T ss_pred E-EEEEEEecCCCCeEEEEEEEEecCce----EEEEEEEEEecCCCCEEEEEEEEEEEEEccc
Confidence 2 233445 5677777777543 333 4788999999988899999999999887643
No 49
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=96.46 E-value=0.2 Score=38.39 Aligned_cols=142 Identities=10% Similarity=0.118 Sum_probs=80.1
Q ss_pred eEEEEEEEcCCHHHHH-HHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCce--eeeeeEEEEeeeCCC
Q 031700 7 KLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPI--VKVSTEKIENVDEAN 82 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW-~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~--~~~~kErl~~~D~~~ 82 (154)
-+..+..+++|+++++ .++-|.. ..++|.+ .+.++++++--+...=-++.+..+ ++... ..++--|....++.+
T Consensus 50 ~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~-~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~ 127 (209)
T cd08905 50 VFRLEVVVDQPLDNLYSELVDRME-QMGEWNP-NVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGST 127 (209)
T ss_pred EEEEEEEecCCHHHHHHHHHhchh-hhceecc-cchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCc
Confidence 3778899999999999 5566775 6899998 788888776421011112322222 22110 011222222223333
Q ss_pred cEEEEEEEecCccc------ceeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCCCCCC--hhhH-HHHHHHHHHHHHHHH
Q 031700 83 KVVTYKVIDGDLLK------YYKAFKGIVSVNPK-G--EGSLVKWACEFEKASDDVPD--PSVI-KDFALKNFQEVDDYI 150 (154)
Q Consensus 83 ~~~~Y~~ieg~~~~------~~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~~~~~--~~~~-~~~~~~~~k~ie~~l 150 (154)
..+.....+-+..+ ....+.+-+.+.|. + ++|.++|.+..+|.+.. |. -... .+.....++.|.++|
T Consensus 128 ~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~i-P~~lvN~~~~~~~~~~~~~Lr~~~ 206 (209)
T cd08905 128 CVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWL-PKSIINQVLSQTQVDFANHLRQRM 206 (209)
T ss_pred EEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCC-CHHHHHHHhHHhHHHHHHHHHHHH
Confidence 33222222222221 25667788889997 3 57999999999998873 32 1122 244456677777766
Q ss_pred h
Q 031700 151 L 151 (154)
Q Consensus 151 ~ 151 (154)
.
T Consensus 207 ~ 207 (209)
T cd08905 207 A 207 (209)
T ss_pred h
Confidence 4
No 50
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.22 Score=35.90 Aligned_cols=111 Identities=11% Similarity=0.145 Sum_probs=77.8
Q ss_pred ceEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-------CCCceeeeeeEEEEe-
Q 031700 6 GKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-------DGSPIVKVSTEKIEN- 77 (154)
Q Consensus 6 ~~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-------~G~~~~~~~kErl~~- 77 (154)
|++.....|++|.|-||+..+.-+ .|..+.|..+ +.+-+|+ .++..-++.+. .|.. ++-|+++
T Consensus 2 ~tF~~~~~i~aP~E~VWafhsrpd-~lq~LTppw~--VV~p~g~--eitqgtri~m~l~pfglp~~~t----W~Arhte~ 72 (153)
T COG4276 2 GTFVYRTTITAPHEMVWAFHSRPD-ALQRLTPPWI--VVLPLGS--EITQGTRIAMGLTPFGLPAGLT----WVARHTES 72 (153)
T ss_pred cceEEeeEecCCHHHHhhhhcCcc-HHHhcCCCcE--EeccCCC--cccceeeeeecceeecCCCCce----EEEEeeec
Confidence 478888999999999999998776 4667777433 3333553 34444444432 2323 5667776
Q ss_pred -eeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEEeCCCC
Q 031700 78 -VDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFEKASDD 128 (154)
Q Consensus 78 -~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e~~~~~ 128 (154)
+| ...+++=.++.|+.... +..-+-++.+.+++|.+.=++.|++..+.
T Consensus 73 ~~d-~~~~FtDv~i~gPfp~~--~WrHtH~F~~egg~TvliD~Vsye~p~g~ 121 (153)
T COG4276 73 GFD-NGSRFTDVCITGPFPAL--NWRHTHNFVDEGGGTVLIDSVSYELPAGT 121 (153)
T ss_pred ccC-CcceeeeeeecCCccce--eeEEEeeeecCCCcEEEEeeEEeeccCcc
Confidence 64 56677888888876332 45568888888899999999999988774
No 51
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=95.88 E-value=0.5 Score=36.12 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=79.9
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CCCceeeeeeEEE------Ee
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DGSPIVKVSTEKI------EN 77 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G~~~~~~~kErl------~~ 77 (154)
.+..+..|++|++.+.+++.|.. ..++|.|. ..+++.++..+ ..-.+-.+.+. +... ||=+ +.
T Consensus 47 ~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~-~~~~~~l~~~~-~~~~v~y~~~~~PwPv~~-----RD~v~~~~~~~~ 118 (215)
T cd08877 47 SLRMEGEIDGPLFNLLALLNEVE-LYKTWVPF-CIRSKKVKQLG-RADKVCYLRVDLPWPLSN-----REAVFRGFGVDR 118 (215)
T ss_pred EEEEEEEecCChhHeEEEEehhh-hHhhhccc-ceeeEEEeecC-CceEEEEEEEeCceEecc-----eEEEEEEEEEee
Confidence 47788899999999999999995 79999994 55555565432 11223333322 1111 2222 21
Q ss_pred eeCCCcEEEE--EEEecC----------cc--c----ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCCh---hhH
Q 031700 78 VDEANKVVTY--KVIDGD----------LL--K----YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPDP---SVI 135 (154)
Q Consensus 78 ~D~~~~~~~Y--~~ieg~----------~~--~----~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~---~~~ 135 (154)
++ ++..+.. .-+..+ .. . ....+.+-+.+.|. +++|.+++.+..+|.+...|.. -..
T Consensus 119 ~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~liN~~~ 197 (215)
T cd08877 119 LE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKSLLNFVA 197 (215)
T ss_pred ec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHHHHHHHH
Confidence 22 3333322 222210 10 1 24677788889998 4779999999888877644431 133
Q ss_pred HHHHHHHHHHHHHHHh
Q 031700 136 KDFALKNFQEVDDYIL 151 (154)
Q Consensus 136 ~~~~~~~~k~ie~~l~ 151 (154)
++....++.+|.+.+.
T Consensus 198 k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 198 RKFAGLLFEKIQKAAK 213 (215)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555677777776553
No 52
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=95.87 E-value=0.66 Score=36.57 Aligned_cols=115 Identities=10% Similarity=0.039 Sum_probs=68.1
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCC--C-ceeeeeeEEEEeeeCCCc
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADG--S-PIVKVSTEKIENVDEANK 83 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G--~-~~~~~~kErl~~~D~~~~ 83 (154)
.+..+..+++|++++++++.|.. ..++|.+ .+.++++++--+... .+..++..+- . ..-.++--+-...+.++.
T Consensus 82 ~fK~e~~vd~s~e~v~~lL~D~~-~r~~Wd~-~~~e~~vIe~id~~~-~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g 158 (240)
T cd08913 82 SFKVEMVVHVDAAQAFLLLSDLR-RRPEWDK-HYRSCELVQQVDEDD-AIYHVTSPSLSGHGKPQDFVILASRRKPCDNG 158 (240)
T ss_pred EEEEEEEEcCCHHHHHHHHhChh-hhhhhHh-hccEEEEEEecCCCc-EEEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence 35677899999999999999996 6899998 788999987422122 2555553321 1 100111111111222222
Q ss_pred ---EEEEEEEe-cCcc--c---ceeEEEEEEEEeeCC-CCeEEEEEEEEEe
Q 031700 84 ---VVTYKVID-GDLL--K---YYKAFKGIVSVNPKG-EGSLVKWACEFEK 124 (154)
Q Consensus 84 ---~~~Y~~ie-g~~~--~---~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~ 124 (154)
.+....+. .+.. . ...++.+-+.+.|.+ ++|.+++...-+|
T Consensus 159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dP 209 (240)
T cd08913 159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATP 209 (240)
T ss_pred ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCC
Confidence 13333232 2221 1 256677889999985 6799988776665
No 53
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=95.22 E-value=1.2 Score=35.14 Aligned_cols=113 Identities=16% Similarity=0.060 Sum_probs=66.6
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCC-CCCCcEEEEEEcC--CCceeeeeeEEEEe-eeCCC
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG-KAPGSVRLITYAD--GSPIVKVSTEKIEN-VDEAN 82 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~-~~~GsvR~~~~~~--G~~~~~~~kErl~~-~D~~~ 82 (154)
.+..++.+++|++++++++.|.. ..++|.+ ...++++++--+ +. - +..++-.+ ......++-.+=.. ..+.+
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~-~r~~Wd~-~~~e~~vI~qld~~~-~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFT-KRPLWDP-HFLSCEVIDWVSEDD-Q-IYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChh-hhchhHH-hhceEEEEEEeCCCc-C-EEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 47778899999999999999996 6999999 788998887422 22 2 66655332 11110112111010 12123
Q ss_pred --cEEE-EEEEecCcc--c---ceeE-EEEEEEEeeCC-CCeEEEEEEEEEe
Q 031700 83 --KVVT-YKVIDGDLL--K---YYKA-FKGIVSVNPKG-EGSLVKWACEFEK 124 (154)
Q Consensus 83 --~~~~-Y~~ieg~~~--~---~~~~-~~~t~~v~~~~-~~s~v~Wt~~~e~ 124 (154)
..+. .++....+. . .... ..|- .+.|.+ ++|.|++....+|
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~VtY~~~~dP 205 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVSYFNQISA 205 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEEEEEEcCC
Confidence 2232 333331111 1 2344 4444 778874 7899999999988
No 54
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=95.12 E-value=1.1 Score=34.33 Aligned_cols=140 Identities=9% Similarity=-0.022 Sum_probs=74.3
Q ss_pred eEEEEEEEcCCHHHHH-HHHhccCCCCccccCcccceEEEEcCCCCCCCcE-EEEEEc-CCCc--eeeeeeEEEEeeeCC
Q 031700 7 KLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSV-RLITYA-DGSP--IVKVSTEKIENVDEA 81 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW-~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~Gsv-R~~~~~-~G~~--~~~~~kErl~~~D~~ 81 (154)
.+..+..+++|++++| .++.|.. ..++|.+ .+.++++++--+.. -.| +.++.+ .+.+ ...++--|-..-+..
T Consensus 50 ~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~-~~~~~~vi~~~~~~-~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~ 126 (209)
T cd08906 50 TFILKAFMQCPAELVYQEVILQPE-KMVLWNK-TVSACQVLQRVDDN-TLVSYDVAAGAAGGVVSPRDFVNVRRIERRRD 126 (209)
T ss_pred EEEEEEEEcCCHHHHHHHHHhChh-hccccCc-cchhhhheeeccCC-cEEEEEEccccccCCCCCCceEEEEEEEecCC
Confidence 4688899999999998 5789996 6899999 78899888642101 111 223332 1111 001122232222333
Q ss_pred CcE-EEEEEEecCcccc------eeEEEEEEEEee--CC-CCeEEEEEEEEEeCCCCCCCh--h-hHHHHHHHHHHHHHH
Q 031700 82 NKV-VTYKVIDGDLLKY------YKAFKGIVSVNP--KG-EGSLVKWACEFEKASDDVPDP--S-VIKDFALKNFQEVDD 148 (154)
Q Consensus 82 ~~~-~~Y~~ieg~~~~~------~~~~~~t~~v~~--~~-~~s~v~Wt~~~e~~~~~~~~~--~-~~~~~~~~~~k~ie~ 148 (154)
+.. +..++. -+..+. ..++.+=+-+.| .+ ++|.++|.+..+|.+. .|.. . ...+.....++.|.+
T Consensus 127 ~~i~~~~sv~-~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~-lP~~lvN~~~~~~~~~~~~~LR~ 204 (209)
T cd08906 127 RYVSAGISTT-HSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGR-LPRYLIHQSLAATMFEFASHLRQ 204 (209)
T ss_pred cEEEEEEEEe-cCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 322 222332 222221 221222233444 33 5799999999999885 3221 1 222444566666666
Q ss_pred HHh
Q 031700 149 YIL 151 (154)
Q Consensus 149 ~l~ 151 (154)
++.
T Consensus 205 ~~~ 207 (209)
T cd08906 205 RIR 207 (209)
T ss_pred HHh
Confidence 653
No 55
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=94.90 E-value=1 Score=32.80 Aligned_cols=118 Identities=12% Similarity=0.053 Sum_probs=69.2
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCC-ceeeeeeEEEEeeeCCCc-
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGS-PIVKVSTEKIENVDEANK- 83 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~-~~~~~~kErl~~~D~~~~- 83 (154)
.+..+..+++|++++|+++.|.. ..++|-| .+.++++++-.. ..-.+....+. +.. ..-.++--+-...++++.
T Consensus 40 ~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~-~~~~~~vl~~~~-~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~ 116 (193)
T cd00177 40 LLKAEGVIPASPEQVFELLMDID-LRKKWDK-NFEEFEVIEEID-EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY 116 (193)
T ss_pred eEEEEEEECCCHHHHHHHHhCCc-hhhchhh-cceEEEEEEEeC-CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence 46788899999999999999974 6789998 788998887532 12345555554 221 100011112122233222
Q ss_pred EEEEEEEecCccc---c---eeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700 84 VVTYKVIDGDLLK---Y---YKAFKGIVSVNPK-GEGSLVKWACEFEKASD 127 (154)
Q Consensus 84 ~~~Y~~ieg~~~~---~---~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~ 127 (154)
.+...-++.+..+ . ...+.+-+.+.|. +++|.+++....++.+.
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~ 167 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGS 167 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCC
Confidence 2222222221111 1 2233456777888 57899999999998875
No 56
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.10 E-value=2 Score=32.80 Aligned_cols=141 Identities=9% Similarity=0.065 Sum_probs=74.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCC-ccccCcccceEEEEcCCCCCCCcEEEEEEc-C-CCcee-e-ee-eEEEEeeeCC
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLF-PKAFSHDYKSIQVLEGDGKAPGSVRLITYA-D-GSPIV-K-VS-TEKIENVDEA 81 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l-~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~-G~~~~-~-~~-kErl~~~D~~ 81 (154)
+..+..++++++++++.+.|..+.. ++|-+ .+.+++++|--++.. .+-+...+ . +.... + ++ .......++.
T Consensus 48 ~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~-~~~~~~vle~id~~~-~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~ 125 (208)
T cd08903 48 YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ-NVKDFEVVEAISDDV-SVCRTVTPSAAMKIISPRDFVDVVLVKRYEDG 125 (208)
T ss_pred EEEEEEecCCHHHHHHHHHhccchhhhhhhh-ccccEEEEEEecCCE-EEEEEecchhcCCCcCCCceEEEEEEEecCCc
Confidence 7788999999999999998664322 79998 788998887422111 22222222 1 11000 0 11 1121222232
Q ss_pred CcEEEEEEEecCccc---c-eeE----EEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCCh--hhH-HHHHHHHHHHHHHH
Q 031700 82 NKVVTYKVIDGDLLK---Y-YKA----FKGIVSVNPK-GEGSLVKWACEFEKASDDVPDP--SVI-KDFALKNFQEVDDY 149 (154)
Q Consensus 82 ~~~~~Y~~ieg~~~~---~-~~~----~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~~--~~~-~~~~~~~~k~ie~~ 149 (154)
...+.+..++-+..+ . +.. ..+-++..|. .++|.++|.+..+|.+. .|.. ... .+.....++.|.++
T Consensus 126 ~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~-iP~~lvn~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08903 126 TISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGY-LPQTVVDSFFPASMAEFYNNLTKA 204 (208)
T ss_pred eEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCC-cCHHHHHHHhhHHHHHHHHHHHHH
Confidence 233334334332211 1 111 2344555554 36799999999999765 3321 111 24445666777666
Q ss_pred Hh
Q 031700 150 IL 151 (154)
Q Consensus 150 l~ 151 (154)
|.
T Consensus 205 ~~ 206 (208)
T cd08903 205 VK 206 (208)
T ss_pred Hh
Confidence 63
No 57
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=93.94 E-value=2.2 Score=32.68 Aligned_cols=116 Identities=6% Similarity=0.013 Sum_probs=65.8
Q ss_pred EEEEEEE-cCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CC-CceeeeeeEEEEeeeCCCc-
Q 031700 8 LEVELEV-KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG-SPIVKVSTEKIENVDEANK- 83 (154)
Q Consensus 8 ~~~~~~i-~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G-~~~~~~~kErl~~~D~~~~- 83 (154)
+..+..+ ++|++.+++++.|.. ..++|-+ .+.++++++--+ .--.+.+..+. +- .....++--|.. .+.++.
T Consensus 49 ~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~-~~~e~~~ie~~d-~~~~i~y~~~~~P~pvs~RDfV~~r~~-~~~~~~~ 124 (222)
T cd08871 49 IKVSAIFPDVPAETLYDVLHDPE-YRKTWDS-NMIESFDICQLN-PNNDIGYYSAKCPKPLKNRDFVNLRSW-LEFGGEY 124 (222)
T ss_pred EEEEEEeCCCCHHHHHHHHHChh-hhhhhhh-hhceeEEEEEcC-CCCEEEEEEeECCCCCCCCeEEEEEEE-EeCCCEE
Confidence 5566666 689999999999984 6899999 677777776422 11244444443 11 110011222222 222332
Q ss_pred EEEEEEEecCcc---c---ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700 84 VVTYKVIDGDLL---K---YYKAFKGIVSVNPK-GEGSLVKWACEFEKASD 127 (154)
Q Consensus 84 ~~~Y~~ieg~~~---~---~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~ 127 (154)
.+...-++-+.. . ....+.+-+.+.|. +++|.++|....+|.+.
T Consensus 125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~ 175 (222)
T cd08871 125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGS 175 (222)
T ss_pred EEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCC
Confidence 221111221111 1 13456677788888 57899999998888875
No 58
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=93.79 E-value=2.2 Score=32.29 Aligned_cols=141 Identities=8% Similarity=0.076 Sum_probs=78.5
Q ss_pred eEEEEEEEcCCHHHHHHH-HhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-C-CCce-e-eeeeEEEEeeeCC
Q 031700 7 KLEVELEVKSSADKFWGS-IRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-D-GSPI-V-KVSTEKIENVDEA 81 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~-~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~-G~~~-~-~~~kErl~~~D~~ 81 (154)
.+..+..+++|+++|+.. +.|.. ..++|-+ .+.++++++--+ .--.|-...+. . +.+. . .++--|-...++.
T Consensus 49 ~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~-~~~~~~~i~~~d-~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~ 125 (208)
T cd08868 49 VFRLTGVLDCPAEFLYNELVLNVE-SLPSWNP-TVLECKIIQVID-DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIREN 125 (208)
T ss_pred EEEEEEEEcCCHHHHHHHHHcCcc-ccceecC-cccceEEEEEec-CCcEEEEEEecCcCCCcccccceEEEEEEEecCC
Confidence 367788999999999875 56774 6899999 677887776432 11122222222 2 1110 0 1121222222333
Q ss_pred CcEEEEEEEecCccc------ceeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCCCCCC--hh-hHHHHHHHHHHHHHHH
Q 031700 82 NKVVTYKVIDGDLLK------YYKAFKGIVSVNPK-G--EGSLVKWACEFEKASDDVPD--PS-VIKDFALKNFQEVDDY 149 (154)
Q Consensus 82 ~~~~~Y~~ieg~~~~------~~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~~~~~--~~-~~~~~~~~~~k~ie~~ 149 (154)
...+...-++=+..+ ....+.+-+.+.|. + ++|.++|.+..+|.+. .|. -. .........++.|.++
T Consensus 126 ~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~~lvN~~~~~~~~~~~~~Lr~~ 204 (208)
T cd08868 126 CYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQYLVDQALASVLLDFMKHLRKR 204 (208)
T ss_pred eEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCC-CcceeeehhhHHHHHHHHHHHHHH
Confidence 322333323311111 24556677888887 2 5699999999999865 332 11 2234555777788777
Q ss_pred Hh
Q 031700 150 IL 151 (154)
Q Consensus 150 l~ 151 (154)
+.
T Consensus 205 ~~ 206 (208)
T cd08868 205 IA 206 (208)
T ss_pred Hh
Confidence 64
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=92.99 E-value=3.2 Score=31.64 Aligned_cols=141 Identities=11% Similarity=0.013 Sum_probs=77.6
Q ss_pred eEEEEEEE-cCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CC-CceeeeeeEEEEeeeCCCc
Q 031700 7 KLEVELEV-KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DG-SPIVKVSTEKIENVDEANK 83 (154)
Q Consensus 7 ~~~~~~~i-~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G-~~~~~~~kErl~~~D~~~~ 83 (154)
.+..+..+ ++|++.+.+++.|.. ..++|.+ .+.++++++-+....-.+-.+.+. += ..--.++-.|-...|+++.
T Consensus 46 ~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~-~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 123 (207)
T cd08911 46 EYKVYGSFDDVTARDFLNVQLDLE-YRKKWDA-TAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK 123 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHh-hheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence 35665656 999999999999995 6899998 777888887532111223344333 10 0000124444444665554
Q ss_pred EE--EEEEEec-Ccc-----cceeEEEEEEEEeeC----CCCeEEEEEEEEEeCCCCCCChhh----HHHHHHHHHHHHH
Q 031700 84 VV--TYKVIDG-DLL-----KYYKAFKGIVSVNPK----GEGSLVKWACEFEKASDDVPDPSV----IKDFALKNFQEVD 147 (154)
Q Consensus 84 ~~--~Y~~ieg-~~~-----~~~~~~~~t~~v~~~----~~~s~v~Wt~~~e~~~~~~~~~~~----~~~~~~~~~k~ie 147 (154)
.+ ...-++- ... -....|.+-+.+.|. .++|.+.++..-+|. +..+.-- .....-++++.|.
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPg--G~IP~~lvN~~~~~~~~~~l~~l~ 201 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPG--VNIPSYITSWVAMSGMPDFLERLR 201 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCC--CccCHHHHHHHHHhhccHHHHHHH
Confidence 32 2222221 111 136788899999887 257888766654433 3333211 1233345666666
Q ss_pred HHHh
Q 031700 148 DYIL 151 (154)
Q Consensus 148 ~~l~ 151 (154)
+.++
T Consensus 202 ~a~~ 205 (207)
T cd08911 202 NAAL 205 (207)
T ss_pred HHHh
Confidence 5543
No 60
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=91.26 E-value=5.3 Score=30.37 Aligned_cols=140 Identities=10% Similarity=0.005 Sum_probs=78.5
Q ss_pred eEEEEEEE-cCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCC-CCCcEEEEEEc---CCCceeeeeeEEEEeee-C
Q 031700 7 KLEVELEV-KSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGK-APGSVRLITYA---DGSPIVKVSTEKIENVD-E 80 (154)
Q Consensus 7 ~~~~~~~i-~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~-~~GsvR~~~~~---~G~~~~~~~kErl~~~D-~ 80 (154)
.+....++ ++|++.+.+++.|.. ..++|.+ .+.+.++++-+.+ +. .|-.+.+. +-... .++--|-.-.| +
T Consensus 51 ~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~-~~~~~~~le~~~~~~~-~i~y~~~~~P~P~s~R-D~V~~r~~~~~~~ 126 (209)
T cd08870 51 EYLVRGVFEDCTPELLRDFYWDDE-YRKKWDE-TVIEHETLEEDEKSGT-EIVRWVKKFPFPLSDR-EYVIARRLWESDD 126 (209)
T ss_pred EEEEEEEEcCCCHHHHHHHHcChh-hHhhhhh-heeeEEEEEecCCCCc-EEEEEEEECCCcCCCc-eEEEEEEEEEcCC
Confidence 46777778 569999999999985 6899998 6777777765431 12 22333322 11110 12322322233 2
Q ss_pred CCcEEEEEEEecCc-cc----ceeEEEEEEEEeeC--C-CCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHHHH
Q 031700 81 ANKVVTYKVIDGDL-LK----YYKAFKGIVSVNPK--G-EGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVDDY 149 (154)
Q Consensus 81 ~~~~~~Y~~ieg~~-~~----~~~~~~~t~~v~~~--~-~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie~~ 149 (154)
....+....++-+. .. ....|.+.+.+.|. + ++|.+.++..-+|.+. .|.-. ..+...-.+++.|.+.
T Consensus 127 ~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~-IP~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 127 RSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGG-IPRELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred CEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCC-CCHHHHHHHHHhhhHHHHHHHHHH
Confidence 33323222222211 11 36788889999987 4 5688888888877444 33211 2223344666666665
Q ss_pred Hh
Q 031700 150 IL 151 (154)
Q Consensus 150 l~ 151 (154)
+.
T Consensus 206 ~~ 207 (209)
T cd08870 206 LR 207 (209)
T ss_pred Hh
Confidence 53
No 61
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=88.84 E-value=8 Score=28.78 Aligned_cols=141 Identities=11% Similarity=-0.016 Sum_probs=79.8
Q ss_pred eEEEEEEEcCCHHHHH-HHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCce--eeeeeEEEEeee-CC
Q 031700 7 KLEVELEVKSSADKFW-GSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPI--VKVSTEKIENVD-EA 81 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW-~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~~--~~~~kErl~~~D-~~ 81 (154)
.+..+..++++++++. .++.|.. ..++|-+ .+.++++++-.. .-..+.++... .-.+. -.++--|-...| +.
T Consensus 46 ~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~-~~~~~~~ie~~~-~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 46 ASRAVGVVPMVCADLVEELMDDLR-YRPEWDK-NVAKAETLEVID-NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred EEEEEEEEecChHHHHHHHHhccc-chhhCch-hcccEEEEEEEC-CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 4677888999999855 5667774 6899999 777888876422 11355555443 21010 011211211122 23
Q ss_pred CcEEEEEEEecCccc------ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCCCCCC---hhhHHHHHHHHHHHHHHHHh
Q 031700 82 NKVVTYKVIDGDLLK------YYKAFKGIVSVNPK-GEGSLVKWACEFEKASDDVPD---PSVIKDFALKNFQEVDDYIL 151 (154)
Q Consensus 82 ~~~~~Y~~ieg~~~~------~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~~~~~---~~~~~~~~~~~~k~ie~~l~ 151 (154)
...+...-++.+..+ ....+.+-+.+.|. ++.|.++|....++.+. .|. -...+.....+++.+.++|.
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~-iP~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGW-LPHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCC-ccceeehhhhhhhHHHHHHHHHHHHH
Confidence 333433333332211 23567788889998 45699999999998876 332 11333444555666655554
No 62
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=88.30 E-value=9.2 Score=28.85 Aligned_cols=140 Identities=11% Similarity=-0.053 Sum_probs=75.5
Q ss_pred eEEEEEEEcCCHHHHHHHHhc--cCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-CCCc--eeee-e-eEEEEeee
Q 031700 7 KLEVELEVKSSADKFWGSIRD--STTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSP--IVKV-S-TEKIENVD 79 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d--~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~G~~--~~~~-~-kErl~~~D 79 (154)
.+..+..|++++++|.+.+.+ . ...++|-+ .+.++++++.-+ ..=.+.+..++ .+.. ..+. + .+....++
T Consensus 47 ~~k~~~~i~~~~~~v~~~l~d~~~-~~r~~Wd~-~~~~~~~le~id-~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~ 123 (206)
T cd08867 47 LYRAEGIVDALPEKVIDVIIPPCG-GLRLKWDK-SLKHYEVLEKIS-EDLCVGRTITPSAAMGLISPRDFVDLVYVKRYE 123 (206)
T ss_pred EEEEEEEEcCCHHHHHHHHHhcCc-cccccccc-cccceEEEEEeC-CCeEEEEEEccccccCccCCcceEEEEEEEEeC
Confidence 377889999999999999988 5 35689998 688998887532 11122222222 1110 0011 1 12112233
Q ss_pred CCCcEEEEEEEecCccc---c---eeEEEEEEEEeeC---CCCeEEEEEEEEEeCCCCCCChh---hHHHHHHHHHHHHH
Q 031700 80 EANKVVTYKVIDGDLLK---Y---YKAFKGIVSVNPK---GEGSLVKWACEFEKASDDVPDPS---VIKDFALKNFQEVD 147 (154)
Q Consensus 80 ~~~~~~~Y~~ieg~~~~---~---~~~~~~t~~v~~~---~~~s~v~Wt~~~e~~~~~~~~~~---~~~~~~~~~~k~ie 147 (154)
+....+...-++=+..+ . -..+.+-+-+.|. .++|.++|.+..+|.+.. |... ...+.....++.|.
T Consensus 124 ~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~i-P~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 124 DNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMI-PQSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred CCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCC-cHHHHHhhhhhhHHHHHHHHH
Confidence 32233333333222211 1 2333344455654 257999999999998753 2211 22244456667776
Q ss_pred HHH
Q 031700 148 DYI 150 (154)
Q Consensus 148 ~~l 150 (154)
++|
T Consensus 203 ~~~ 205 (206)
T cd08867 203 KGV 205 (206)
T ss_pred Hhc
Confidence 665
No 63
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=85.70 E-value=15 Score=28.67 Aligned_cols=140 Identities=11% Similarity=0.069 Sum_probs=74.6
Q ss_pred EEEEEEEc-CCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---CCCceeeee-eEEEEeeeCCC
Q 031700 8 LEVELEVK-SSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---DGSPIVKVS-TEKIENVDEAN 82 (154)
Q Consensus 8 ~~~~~~i~-a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~G~~~~~~~-kErl~~~D~~~ 82 (154)
+.....++ ++++.+.+++-|.. ...+|.. .+.+.+++|-.+ .--.|-+..+. +-... .++ .-++...|+..
T Consensus 54 ~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~-~~~~~~vie~l~-~~~~I~Y~~~k~PwPvs~R-D~V~~~~~~~~~d~~ 129 (235)
T cd08872 54 LKATHAVKGVTGHEVCHYFFDPD-VRMDWET-TLENFHVVETLS-QDTLIFHQTHKRVWPAAQR-DALFVSHIRKIPALE 129 (235)
T ss_pred EEEEEEECCCCHHHHHHHHhChh-hHHHHHh-hhheeEEEEecC-CCCEEEEEEccCCCCCCCc-EEEEEEEEEecCccc
Confidence 67777888 99999999999985 6889998 788888776421 11122233222 11110 011 11222233211
Q ss_pred --------cEEEEEEEecCcccceeEEEEE-----------------EEEeeCCCCeEEEEEEEEEeCCCCCCChh---h
Q 031700 83 --------KVVTYKVIDGDLLKYYKAFKGI-----------------VSVNPKGEGSLVKWACEFEKASDDVPDPS---V 134 (154)
Q Consensus 83 --------~~~~Y~~ieg~~~~~~~~~~~t-----------------~~v~~~~~~s~v~Wt~~~e~~~~~~~~~~---~ 134 (154)
-.+..++.-....+.-...++. +.+.|.+++|.+++....+|.+.. |... .
T Consensus 130 ~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~i-P~wvvn~~ 208 (235)
T cd08872 130 EPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWA-PASVLRAV 208 (235)
T ss_pred cccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCc-cHHHHHHH
Confidence 1123332222111111111122 223443457999999988887763 2211 2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 031700 135 IKDFALKNFQEVDDYILK 152 (154)
Q Consensus 135 ~~~~~~~~~k~ie~~l~~ 152 (154)
++..+-.+++.+.+|+..
T Consensus 209 ~k~~~P~~l~~~~~~~~~ 226 (235)
T cd08872 209 YKREYPKFLKRFTSYVQE 226 (235)
T ss_pred HHhhchHHHHHHHHHHHH
Confidence 334456889999999875
No 64
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=85.56 E-value=13 Score=27.94 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=68.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc-C-CCceeeeeeEEEEeeeCCC--c
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-D-GSPIVKVSTEKIENVDEAN--K 83 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~-~-G~~~~~~~kErl~~~D~~~--~ 83 (154)
+..+..|++++++|++.+-+. -++|-+ .+.++++++--+ .-=.|-+..+. + ....-.++--|....|.++ .
T Consensus 46 ~K~~~~v~a~~~~v~~~l~d~---r~~Wd~-~~~~~~vie~id-~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~ 120 (197)
T cd08869 46 WRASTEVEAPPEEVLQRILRE---RHLWDD-DLLQWKVVETLD-EDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGAC 120 (197)
T ss_pred EEEEEEeCCCHHHHHHHHHHH---Hhccch-hhheEEEEEEec-CCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcE
Confidence 588999999999999988765 279999 688888886422 11123333332 1 1111112323333333333 2
Q ss_pred EEEEEEEec--C-ccc--ceeEEEEEEEEeeC-CCCeEEEEEEEEEeCCC
Q 031700 84 VVTYKVIDG--D-LLK--YYKAFKGIVSVNPK-GEGSLVKWACEFEKASD 127 (154)
Q Consensus 84 ~~~Y~~ieg--~-~~~--~~~~~~~t~~v~~~-~~~s~v~Wt~~~e~~~~ 127 (154)
.+...-++- . +.. ....+.+-+.+.|. .++|.|+|.+..+|.+.
T Consensus 121 ~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~ 170 (197)
T cd08869 121 VLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGR 170 (197)
T ss_pred EEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCC
Confidence 333333321 1 111 13556678889998 47799999999999876
No 65
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=83.91 E-value=6.9 Score=30.33 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=66.9
Q ss_pred EEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEE---EeeeCCCcEEEEE
Q 031700 12 LEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKI---ENVDEANKVVTYK 88 (154)
Q Consensus 12 ~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl---~~~D~~~~~~~Y~ 88 (154)
-.|..+++.+|+++++.. ...++.| .-+++++++-+. +-+.+-.+.. |.++ +-|+. +..++...+.+ .
T Consensus 74 rligysp~~my~vVS~V~-~Y~~FVP-wC~kS~V~~~~P-~~~~kA~LeV--GFk~---l~E~y~S~Vt~~~p~l~kt-~ 144 (227)
T KOG3177|consen 74 RLIGYSPSEMYSVVSNVS-EYHEFVP-WCKKSDVTSRRP-SGPLKADLEV--GFKP---LDERYTSNVTCVKPHLTKT-V 144 (227)
T ss_pred hhhCCCHHHHHHHHHhHH-Hhhcccc-ceeccceeecCC-CCCceeeEEe--cCcc---cchhheeeeEEecccceEE-e
Confidence 347889999999999985 6889999 777777665331 2244555554 3222 22332 22444554443 2
Q ss_pred EEecCcccceeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCC
Q 031700 89 VIDGDLLKYYKAFKGIVSVNPK-G--EGSLVKWACEFEKASD 127 (154)
Q Consensus 89 ~ieg~~~~~~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~ 127 (154)
.-+|.+ +......|++.|. + +.|.+...++||-..-
T Consensus 145 ~~d~rL---F~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~S~ 183 (227)
T KOG3177|consen 145 CADGRL---FNHLITIWSFKPGPNIPRTCTLDFSVSFEFKSL 183 (227)
T ss_pred eccccH---HHhhhheeeeccCCCCCCeEEEEEEEEEEehhH
Confidence 345544 5566678999887 3 6799999999997654
No 66
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=78.36 E-value=20 Score=24.95 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=58.8
Q ss_pred EEEEEcCCHHHHHHHHhccCCCCccc---cCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEE
Q 031700 10 VELEVKSSADKFWGSIRDSTTLFPKA---FSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVT 86 (154)
Q Consensus 10 ~~~~i~a~~~~vW~~~~d~~~~l~~~---~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~ 86 (154)
.+..+++||+.+++.+-+. .+.++ -...+..-++ +| .-=.=++..+.. ++=+|+.+ ..++.|.
T Consensus 3 I~~~l~v~a~~ff~~l~~s--~~~DI~~~tgk~~~~~~L-~G------~~Y~K~~~~~~~----~~v~It~~-~~~~~Y~ 68 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDS--LLYDIKQATGKKLPVKQL-KG------FSYQKKFKNKRE----AKVKITEY-EPNKRYA 68 (120)
T ss_pred EEEEecCCHHHHHHHHHHH--HHHHHHHHcCCCCChhhc-CC------cEEEEEcCCCCE----EEEEEEEE-cCCCEEE
Confidence 4567999999999998543 12221 1111111111 22 222222334432 34467877 5888888
Q ss_pred EEEEecCcccceeEEEEEEEEeeCCC-CeEEEEEEEEEeCC
Q 031700 87 YKVIDGDLLKYYKAFKGIVSVNPKGE-GSLVKWACEFEKAS 126 (154)
Q Consensus 87 Y~~ieg~~~~~~~~~~~t~~v~~~~~-~s~v~Wt~~~e~~~ 126 (154)
+++.... ..+..+.++.|.++ .|.|+.+=++++.+
T Consensus 69 ~~~~s~~-----~~~~i~Y~i~~~~~~~~~v~y~E~~~~~~ 104 (120)
T PF11687_consen 69 ATFSSSR-----GTFTISYEIEPLDDGSIEVTYEEEYESKG 104 (120)
T ss_pred EEEEecC-----CCEEEEEEEEECCCCcEEEEEEEEEccCC
Confidence 8886543 35677888889864 49999998887554
No 67
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=73.89 E-value=38 Score=25.93 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=66.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcC-CCCCCCcEEEEEEcC--CCceeeeeeEEEE-----eee
Q 031700 8 LEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEG-DGKAPGSVRLITYAD--GSPIVKVSTEKIE-----NVD 79 (154)
Q Consensus 8 ~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG-~~~~~GsvR~~~~~~--G~~~~~~~kErl~-----~~D 79 (154)
+..+..++++++++|+.+.+- ....+|=+ .+.+++++|- +.+. .|-+..... +..+. -|+=+. .++
T Consensus 48 ~k~egvi~~~~e~v~~~l~~~-e~r~~Wd~-~~~~~~iie~Id~~T--~I~~~~~~~~~~~~vs--pRDfV~vr~~~r~~ 121 (204)
T cd08904 48 YRVEGIIPESPAKLIQFMYQP-EHRIKWDK-SLQVYKMLQRIDSDT--FICHTITQSFAMGSIS--PRDFVDLVHIKRYE 121 (204)
T ss_pred EEEEEEecCCHHHHHHHHhcc-chhhhhcc-cccceeeEEEeCCCc--EEEEEecccccCCccc--CceEEEEEEEEEeC
Confidence 677889999999999999886 46789999 7888888873 2211 333323221 22110 122111 123
Q ss_pred CCCcEEEEEEEecCcccc------eeEEEEEEEEeeC-C--CCeEEEEEEEEEeCCC
Q 031700 80 EANKVVTYKVIDGDLLKY------YKAFKGIVSVNPK-G--EGSLVKWACEFEKASD 127 (154)
Q Consensus 80 ~~~~~~~Y~~ieg~~~~~------~~~~~~t~~v~~~-~--~~s~v~Wt~~~e~~~~ 127 (154)
+....+.+..++=+..++ -..+.+=+-+.|. + ++|.++|-+..++.+.
T Consensus 122 ~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 122 GNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 433333444444332211 2333445566776 3 3699999999888854
No 68
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=73.59 E-value=37 Score=25.76 Aligned_cols=136 Identities=14% Similarity=0.065 Sum_probs=73.7
Q ss_pred eEEEEEEEc-CCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEc---C--CCceeeeeeEEEEeeeC
Q 031700 7 KLEVELEVK-SSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA---D--GSPIVKVSTEKIENVDE 80 (154)
Q Consensus 7 ~~~~~~~i~-a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~---~--G~~~~~~~kErl~~~D~ 80 (154)
.+..+..++ ++++.+.+++.|.. ..++|.+. +.++.-.+.++ -.+-.+.+. + ...+. +.+.+ ..+|.
T Consensus 50 ~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~-~~~~~~~~~~~---~~i~y~~~k~PwPvs~RD~V-~~r~~-~~~~~ 122 (207)
T cd08910 50 EYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQY-VKELYEKECDG---ETVIYWEVKYPFPLSNRDYV-YIRQR-RDLDV 122 (207)
T ss_pred EEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHH-HHhheeecCCC---CEEEEEEEEcCCCCCCceEE-EEEEe-ccccC
Confidence 466677887 79999999999985 68899984 44442222222 123444442 1 11110 11222 23444
Q ss_pred CCcEEEE---EEEecCccc------ceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCCCCCCh--h-hHHHHHHHHHHHHH
Q 031700 81 ANKVVTY---KVIDGDLLK------YYKAFKGIVSVNPKG-EGSLVKWACEFEKASDDVPDP--S-VIKDFALKNFQEVD 147 (154)
Q Consensus 81 ~~~~~~Y---~~ieg~~~~------~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~~~~~~--~-~~~~~~~~~~k~ie 147 (154)
.+..+.. ..++=+..+ ....|.+.+.+.|.+ ++|.+++....+|.+. .|.- . ..+...-.++++|.
T Consensus 123 ~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~-IP~wlvN~~~~~~~~~~l~~l~ 201 (207)
T cd08910 123 EGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGM-IPSWLINWAAKNGVPNFLKDMQ 201 (207)
T ss_pred CCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCc-chHHHHHHHHHHhhHHHHHHHH
Confidence 4432211 112111111 367889999999884 6799988888877554 2221 1 11233445666666
Q ss_pred HHH
Q 031700 148 DYI 150 (154)
Q Consensus 148 ~~l 150 (154)
+.+
T Consensus 202 ka~ 204 (207)
T cd08910 202 KAC 204 (207)
T ss_pred HHH
Confidence 554
No 69
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=69.28 E-value=49 Score=25.35 Aligned_cols=115 Identities=9% Similarity=0.033 Sum_probs=68.0
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEE--c-CCCceeeeeeEEEEeeeCCCc
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY--A-DGSPIVKVSTEKIENVDEANK 83 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~--~-~G~~~~~~~kErl~~~D~~~~ 83 (154)
.+..+++|+++++++...+-|. .++|.+ .+.+.++++--+..- -|-...+ + +-.. ..++.-|.-..|..+.
T Consensus 53 ~~r~~~~i~a~~~~vl~~lld~---~~~Wd~-~~~e~~vIe~ld~~~-~I~Yy~~~~PwP~~~-RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 53 LWRTTIEVPAAPEEILKRLLKE---QHLWDV-DLLDSKVIEILDSQT-EIYQYVQNSMAPHPA-RDYVVLRTWRTNLPKG 126 (204)
T ss_pred EEEEEEEeCCCHHHHHHHHHhh---HHHHHH-HhhheEeeEecCCCc-eEEEEEccCCCCCCC-cEEEEEEEEEEeCCCC
Confidence 4788999999999999999766 479998 566777776422011 1222221 1 2211 0123333333334444
Q ss_pred EEEEEEEec--Cccc----ceeEEEEEEEEeeCC-CCeEEEEEEEEEeCCC
Q 031700 84 VVTYKVIDG--DLLK----YYKAFKGIVSVNPKG-EGSLVKWACEFEKASD 127 (154)
Q Consensus 84 ~~~Y~~ieg--~~~~----~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~~~ 127 (154)
.+.....+. +..+ ....+.+-+.+.|.+ ++|.|++.+..+|.+.
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~ 177 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGH 177 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCC
Confidence 343333212 1111 245677888899984 7899999999998776
No 70
>TIGR02777 LigD_PE_dom DNA ligase D, 3'-phosphoesterase domain. Most sequences in this family are the 3'-phosphoesterase domain of a multidomain, multifunctional DNA ligase, LigD, involved, along with bacterial Ku protein, in non-homologous end joining, the less common of two general mechanisms of repairing double-stranded breaks in DNA sequences. LigD is variable in architecture, as it lacks this domain in Bacillus subtilis, is permuted in Mycobacterium tuberculosis, and occasionally is encoded by tandem ORFs rather than as a multifuntional protein. In a few species (Dehalococcoides ethenogenes and the archaeal genus Methanosarcina), sequences corresponding to the ligase and polymerase domains of LigD are not found, and the role of this protein is unclear.
Probab=53.18 E-value=30 Score=25.49 Aligned_cols=61 Identities=26% Similarity=0.515 Sum_probs=30.8
Q ss_pred CcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEE-EEEEEeCCC
Q 031700 54 GSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKW-ACEFEKASD 127 (154)
Q Consensus 54 GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~W-t~~~e~~~~ 127 (154)
|..+.|.++.|.+ +|+..+++.-.+-+=++ .|..|.++|---.-+.|+.+.| +..|++...
T Consensus 50 GVL~SWAvPkGPs-----------~dp~~kRLAv~~EDHpl--~Y~~FEG~IP~g~YGaG~V~iWD~Gty~~~~~ 111 (156)
T TIGR02777 50 GVLKSWAVPKGPS-----------LDPADKRLAVHVEDHPL--DYADFEGTIPKGEYGAGTVIVWDRGTWEPEGD 111 (156)
T ss_pred CeEEEeEcCcCCC-----------CCcccceeeeEccCccc--hhccccccccCCccCCccEEEEeCceEEeCCC
Confidence 4556666655532 34444444333322222 2445544432111146788899 688888753
No 71
>cd08885 RHO_alpha_C_1 C-terminal catalytic domain of the oxygenase alpha subunit of an uncharacterized subgroup of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of a functionally uncharacterized subgroup of the Rieske-type non-heme iron aromatic ring-hydroxylating oxygenase (RHO) family. RHOs, also known as aromatic ring hydroxylating dioxygenases, utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and
Probab=47.47 E-value=1.1e+02 Score=22.30 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=29.8
Q ss_pred CCcEEEEEEEecCcccceeEEEEEEEEeeCC-CCeEEEEEEEEEeC
Q 031700 81 ANKVVTYKVIDGDLLKYYKAFKGIVSVNPKG-EGSLVKWACEFEKA 125 (154)
Q Consensus 81 ~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~-~~s~v~Wt~~~e~~ 125 (154)
....+.|.+.-+-.+..+..+...+++.|.+ +.|.++|..-+.+.
T Consensus 80 ~~~~~~~~iFPN~~i~~~~~~~~~~~~~P~~~~~t~~~~~~~~~~~ 125 (190)
T cd08885 80 RRRLVLFAIFPTHLLALTPDYVWWLSLLPEGAGRVRVRWGVLVAPE 125 (190)
T ss_pred hcceEEEEECCcEEEEecCCeEEEEEEEecCCCeEEEEEEEEEcch
Confidence 3455666666554443455667788999995 77889887755443
No 72
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=45.12 E-value=1.2e+02 Score=21.95 Aligned_cols=99 Identities=18% Similarity=0.352 Sum_probs=52.0
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCC-CCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDG-KAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV 85 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~-~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~ 85 (154)
.++.++..+.+.+.+-.+++|..-.+|+++| .++++. ++++. .+-|. | .+.+.. ++=++- +...+=+|
T Consensus 2 ~~~~~i~t~H~~e~v~~ILSDP~F~lp~l~p-~ik~v~-~~~~sF~~~g~-----~-~~~~~~--~~G~vy-~s~~~ItY 70 (136)
T PF11485_consen 2 EIEIEIKTSHDIEVVLTILSDPEFVLPRLFP-PIKSVK-VEENSFRAEGK-----F-GGFPFE--MKGNVY-VSSNEITY 70 (136)
T ss_dssp -EEEEEE-SS-HHHHHHHHT-HHHHHHHHST-TEEEEE--STTEEEEEEE-----E-TTEEEE--EEEEEE-EETTEEEE
T ss_pred eEEEEeccCCChHheEEEecCCccEecccCC-ceEEEE-ecCCEEEEEEE-----E-eeEEEE--EEEEEE-EccceEEE
Confidence 4678888999999999999987768899999 789988 44431 11111 1 222221 333322 33344455
Q ss_pred EEEEEecCcccceeEEEEEEEEeeCCCCeEEEEEEEEE
Q 031700 86 TYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKWACEFE 123 (154)
Q Consensus 86 ~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~Wt~~~e 123 (154)
.+.+..|+.. .+=+-++++.+ ..|...++|+
T Consensus 71 vf~~~~g~~~---g~GkL~i~~~~----~~i~l~~eye 101 (136)
T PF11485_consen 71 VFNLAGGGPN---GNGKLTIQLEN----GKIKLIFEYE 101 (136)
T ss_dssp EEE----ETT---EEEEEEEEEET----TEEEEEEEES
T ss_pred EEEeeccCCC---CcEEEEEEecC----CEEEEEEEcc
Confidence 5555555332 23233455422 3677777885
No 73
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=43.82 E-value=1.3e+02 Score=22.07 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=81.2
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcC-C--C-ceeeeeeEEEEee-eCC
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYAD-G--S-PIVKVSTEKIENV-DEA 81 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~-G--~-~~~~~~kErl~~~-D~~ 81 (154)
.+.....++++++++...+.+-.. .|-+ .+.++++++--. .-..+..+.+.. . . ....++--|.... .+.
T Consensus 47 ~~k~~~~v~~~~~~~~~~~~~~~~---~Wd~-~~~~~~~le~~~-~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~ 121 (206)
T PF01852_consen 47 MFKAEGVVPASPEQVVEDLLDDRE---QWDK-MCVEAEVLEQID-EDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDG 121 (206)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGG---HHST-TEEEEEEEEEEE-TTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTS
T ss_pred EEEEEEEEcCChHHHHHHHHhhHh---hccc-chhhheeeeecC-CCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccc
Confidence 467888999999988888876632 9998 788888887521 125666666552 2 1 1111121122222 333
Q ss_pred CcEEEEEEEecCcc-c------ceeEEEEEEEEeeCCC-CeEEEEEEEEEeCCCCCCChhhH-----HHHHHHHHHHHHH
Q 031700 82 NKVVTYKVIDGDLL-K------YYKAFKGIVSVNPKGE-GSLVKWACEFEKASDDVPDPSVI-----KDFALKNFQEVDD 148 (154)
Q Consensus 82 ~~~~~Y~~ieg~~~-~------~~~~~~~t~~v~~~~~-~s~v~Wt~~~e~~~~~~~~~~~~-----~~~~~~~~k~ie~ 148 (154)
...+..+=++.+.. + .-..+.+-+.+.|.++ .|.|++...-+|.+.. |..+ +.....+++.+-+
T Consensus 122 ~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~~vt~~~~~D~~G~i---P~~~~n~~~~~~~~~~~~~~~~ 198 (206)
T PF01852_consen 122 TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRTRVTYVSQVDPKGWI---PSWLVNMVVKSQPPNFLKNLRK 198 (206)
T ss_dssp EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEEEEEEEEEEESSSSS---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCceEEEEEEECCCCCC---hHHHHHHHHHHhHHHHHHHHHH
Confidence 34455544444321 1 2456777888888854 4999999998888753 3222 2334455666666
Q ss_pred HHhhC
Q 031700 149 YILKA 153 (154)
Q Consensus 149 ~l~~~ 153 (154)
+|..+
T Consensus 199 ~~~~~ 203 (206)
T PF01852_consen 199 ALKKQ 203 (206)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 66543
No 74
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=36.95 E-value=83 Score=25.01 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=27.5
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.|++.+++..... ..+.+.+.++.+.+.+|+++.++|
T Consensus 238 ~y~i~~~~~~~~~-~~~~~~~~t~~~~~~lE~~Ir~~P 274 (295)
T PRK05645 238 GYKVILEAAPEDM-YSTDVEVSAAAMSKVVERYVRAYP 274 (295)
T ss_pred eEEEEEecCCcCC-CCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4777776654322 235677889999999999999988
No 75
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=35.56 E-value=86 Score=25.13 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=26.8
Q ss_pred EEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 118 WACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 118 Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
|++.+.+..+. +..+...+.++.+.+.+|+++.++|
T Consensus 249 ~~i~~~~~~~~-~~~~~~~~~t~~~n~~lE~~Ir~~P 284 (305)
T TIGR02208 249 FELTVRPAMAT-ELSVDPEQEARAMNKEVEQFILPYP 284 (305)
T ss_pred EEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 77777655432 2345667888999999999999988
No 76
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=35.31 E-value=94 Score=24.52 Aligned_cols=38 Identities=13% Similarity=0.224 Sum_probs=28.4
Q ss_pred EEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 116 VKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 116 v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
..|.+.++|.-+... .+...+.++.+.+.+|+++.++|
T Consensus 246 ~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~lE~~Ir~~P 283 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPS-SEDIEELTQRYNDRLEEWIREHP 283 (295)
T ss_pred CEEEEEEeecccCCc-cchHHHHHHHHHHHHHHHHHcCh
Confidence 567788887544322 22667889999999999999988
No 77
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=33.57 E-value=95 Score=24.78 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=26.8
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.+++.+++..+. .+.+...+.++.+.+.+|+++.++|
T Consensus 245 ~~~i~~~~~~~~-~~~~~~~~~t~~~~~~lE~~Ir~~P 281 (303)
T TIGR02207 245 GYRLKIDPPLDD-FPGDDEIAAAARMNKIVEKMIMRAP 281 (303)
T ss_pred eEEEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 367777665433 2234567788999999999999987
No 78
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.55 E-value=1e+02 Score=24.79 Aligned_cols=37 Identities=8% Similarity=0.090 Sum_probs=28.0
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.|.+.+++.... .+.+.+.+.++.+.+.+|+++.++|
T Consensus 248 ~y~i~i~~~~~~-~~~~~i~~~t~~~~~~lE~~Ir~~P 284 (306)
T PRK08733 248 RYVLKIAPPLAD-FPSDDVIADTTRVNAAIEDMVREAP 284 (306)
T ss_pred eEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 477777665432 2345777889999999999999988
No 79
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.52 E-value=1.1e+02 Score=24.20 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=26.8
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.|++.+.+..... +.+.+.+.++.+.+.+|+++.++|
T Consensus 232 ~~~i~i~~~~~~~-~~~~~~~~t~~~~~~lE~~Ir~~P 268 (289)
T PRK08706 232 TVTLHFYPAWDSF-PSEDAQADAQRMNRFIEERVREHP 268 (289)
T ss_pred cEEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHcCc
Confidence 3666666543322 234677889999999999999988
No 80
>PF13298 LigD_N: DNA polymerase Ligase (LigD); PDB: 3TA5_A 3P4H_A 3TA7_A 3N9B_A 3N9D_A 2LJ6_A 3P43_A.
Probab=29.32 E-value=1.9e+02 Score=19.81 Aligned_cols=59 Identities=22% Similarity=0.473 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEEEEecCcccceeEEEEEEEEeeCCCCeEEEE-EEEEEeC
Q 031700 54 GSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLVKW-ACEFEKA 125 (154)
Q Consensus 54 GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~~~~s~v~W-t~~~e~~ 125 (154)
|..+.|.++.|.+ .|...+++.-.+.+=++ .|-.|.+++-=-.-+.|+.+.| ...|++.
T Consensus 18 gvl~SWavpkgp~-----------~~p~~krlAv~~edHpl--~y~~feg~ip~G~yG~G~v~iwD~Gty~~~ 77 (105)
T PF13298_consen 18 GVLKSWAVPKGPS-----------LDPGDKRLAVQTEDHPL--EYLDFEGTIPSGEYGAGTVIIWDRGTYEPL 77 (105)
T ss_dssp TEEEEEEETT--------------SSTTSEEEEEEEEEEEG--GGGGEEEEE-TTSTT-EEEEEEEEEEEEEE
T ss_pred CeEEeeECccCCC-----------CCcccccceeeCCCCCc--hhhccccccccCCCCceEEEEEeccEEEEC
Confidence 4578888776643 56677777666655443 4677777643111134678888 7788866
No 81
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.05 E-value=1.4e+02 Score=24.00 Aligned_cols=37 Identities=16% Similarity=-0.006 Sum_probs=26.9
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.|.+.+++..... +.+...+.++.+.+.+|+++.++|
T Consensus 251 ~~~i~~~~~~~~~-~~~d~~~~t~~~n~~lE~~Ir~~P 287 (309)
T PRK06860 251 GYELIILPPEDSP-PLDDAEATAAWMNKVVEKCILMAP 287 (309)
T ss_pred eEEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4777777654432 234566788888999999999988
No 82
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=27.55 E-value=59 Score=19.62 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=22.9
Q ss_pred eEEEEeeeCCCcEEEEEEEecCcccceeEEEEEEEEeeC---CCCeEE
Q 031700 72 TEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK---GEGSLV 116 (154)
Q Consensus 72 kErl~~~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~---~~~s~v 116 (154)
=||+-.-|...|.++..+..|.. |..+.+.|.=-.. .+||.|
T Consensus 9 GdrVQlTD~Kgr~~Ti~L~~G~~---fhThrG~i~HDdlIG~~eGsVV 53 (54)
T PF14801_consen 9 GDRVQLTDPKGRKHTITLEPGGE---FHTHRGAIRHDDLIGRPEGSVV 53 (54)
T ss_dssp T-EEEEEETT--EEEEE--TT-E---EEETTEEEEHHHHTT--TTEEE
T ss_pred CCEEEEccCCCCeeeEEECCCCe---EEcCccccchhheecCCCcEEe
Confidence 36777778888889998888875 5666666653222 256655
No 83
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=27.50 E-value=1.4e+02 Score=21.52 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=25.2
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.+++.|.+.... .......+.++.+.+.+|+.+.++|
T Consensus 145 ~~~i~~~~~i~~-~~~~~~~~~~~~~~~~lE~~i~~~P 181 (192)
T cd07984 145 GYRIEFEPPLEN-PPSEDVEEDTQRLNDALEAAIREHP 181 (192)
T ss_pred CEEEEEeCCCCC-CCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 356666543221 1134666888999999999999887
No 84
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=27.38 E-value=1.4e+02 Score=23.74 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.8
Q ss_pred EEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 118 WACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 118 Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
+.+.+.+.... +..+...+.++.+.+.+|+++.++|
T Consensus 236 y~v~~~~~~~~-~~~~~~~~~t~~~~~~lE~~Ir~~P 271 (298)
T PRK07920 236 WGFRVHPPLDV-PSAEDVAAMTQALADAFAANIAAHP 271 (298)
T ss_pred EEEEEeCCCCC-CchhHHHHHHHHHHHHHHHHHHhCh
Confidence 77777655432 2235667888999999999999987
No 85
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=27.18 E-value=1.3e+02 Score=23.91 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=25.4
Q ss_pred EEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 118 WACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 118 Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
+++.|.+.... .++.+.+.++.+.+.+|+++.++|
T Consensus 228 y~~~~~~~~~~--~~~~~~~~t~~~~~~lE~~Ir~~P 262 (289)
T PRK08905 228 YRLHLRPVQEP--LPGDKAADAAVINAEIERLIRRFP 262 (289)
T ss_pred EEEEEecCCCC--CCCCHHHHHHHHHHHHHHHHHcCc
Confidence 55666554432 234566889999999999999988
No 86
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=26.81 E-value=1.5e+02 Score=23.91 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=27.1
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.|.+.+++..+. .+.++..+.++.+.+.+|+++.++|
T Consensus 257 ~~~i~~~~~~~~-~~~~d~~~~t~~~~~~lE~~Ir~~P 293 (314)
T PRK08943 257 RLDIEIRPPMDD-LLSADDETIARRMNEEVEQFVGPHP 293 (314)
T ss_pred eEEEEEecCCCC-CCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 477777765443 2234666788999999999999987
No 87
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=26.06 E-value=1.5e+02 Score=23.72 Aligned_cols=37 Identities=11% Similarity=-0.009 Sum_probs=26.3
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.+++.+++..+.. +.+...+.++.+.+.+|+++.++|
T Consensus 239 ~y~~~~~~~~~~~-~~~~~~~~~~~~n~~lE~~Ir~~P 275 (305)
T PRK08734 239 EFALHVQPADPAV-ADPDPLRAATALNAGIERIARRDP 275 (305)
T ss_pred cEEEEEecCCCCC-CCCCHHHHHHHHHHHHHHHHHcCc
Confidence 3666666543322 234666788999999999999988
No 88
>KOG2936 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.68 E-value=2.7e+02 Score=22.81 Aligned_cols=99 Identities=12% Similarity=0.122 Sum_probs=53.4
Q ss_pred eEEEEEEEcCCHHHHHHHHhccCCCCccccCcccceEEEEcCCCCCCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEE-
Q 031700 7 KLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVV- 85 (154)
Q Consensus 7 ~~~~~~~i~a~~~~vW~~~~d~~~~l~~~~p~~v~s~~~~eG~~~~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~- 85 (154)
.++-+-.++|+++.++++|.+.. .+..|.- |...++++. -|..- +-+|... . +++.+ +.++.|
T Consensus 174 di~l~~tfn~~~~eLy~~fld~~-rv~~wt~----S~a~l~~~~--~g~f~---lf~GnVt----g-~~~~~-e~~K~Iv 237 (301)
T KOG2936|consen 174 DISLSATFNCRVDELYEIFLDPE-RVKAWTR----SPAELEADP--GGKFS---LFDGNVT----G-EFLEL-EKNKKIV 237 (301)
T ss_pred cceehhhcCCCHHHHHHHHhcHH-HHHHhcC----ChhhcccCC--CCceE---Eecccce----e-eeeee-cCCCeEE
Confidence 45666778999999999998884 5666653 222234432 13333 3367653 2 33334 344433
Q ss_pred -EEEEEecCcccceeEEEEEEEEeeC--CCCeEEEEEEEEEeCC
Q 031700 86 -TYKVIDGDLLKYYKAFKGIVSVNPK--GEGSLVKWACEFEKAS 126 (154)
Q Consensus 86 -~Y~~ieg~~~~~~~~~~~t~~v~~~--~~~s~v~Wt~~~e~~~ 126 (154)
.+++=+=+ ..+-+||++... ++.|.+.....=-|.+
T Consensus 238 ~kWrl~~Wp-----~~~~atI~~~f~~~~~~t~l~~~~kgVP~~ 276 (301)
T KOG2936|consen 238 MKWRLKSWP-----DGHDATITLTFYESQGETKLQVKQKGVPIG 276 (301)
T ss_pred EEEecccCC-----CCccceEEEEEecCCCceEEEEEecCCCcc
Confidence 35553211 234456666555 4557766555444433
No 89
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=25.03 E-value=1.7e+02 Score=23.51 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCCCC--C-hhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVP--D-PSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~--~-~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.|.+.+++..+... + .+.+.+.++.+.+.+|+++.++|
T Consensus 257 ~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir~~P 297 (308)
T PRK06553 257 RFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVREYP 297 (308)
T ss_pred eEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHcCh
Confidence 37777776544211 1 23567888999999999999987
No 90
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=23.70 E-value=1.8e+02 Score=23.33 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=25.4
Q ss_pred EEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHHhhCC
Q 031700 117 KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYILKAN 154 (154)
Q Consensus 117 ~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l~~~~ 154 (154)
.|++.+++.... .+.+...+.++.+.+.+|+++.++|
T Consensus 249 ~~~i~~~~~~~~-~~~~~~~~~~~~~~~~lE~~Ir~~P 285 (310)
T PRK05646 249 GYRLVIHPPLED-FPGESEEADCLRINQWVERVVRECP 285 (310)
T ss_pred eEEEEEeCCCcC-CCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 377777754332 2223445567899999999999987
No 91
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=22.96 E-value=2.7e+02 Score=22.23 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=31.3
Q ss_pred eeEEEEEEEEeeCCC-CeEEEEEEEEEeCCCCCCChhhHHHHHHHHHHHHHHHH
Q 031700 98 YKAFKGIVSVNPKGE-GSLVKWACEFEKASDDVPDPSVIKDFALKNFQEVDDYI 150 (154)
Q Consensus 98 ~~~~~~t~~v~~~~~-~s~v~Wt~~~e~~~~~~~~~~~~~~~~~~~~k~ie~~l 150 (154)
-..+++|++-.+.++ .+..+|.+.|... ...++.+.+++.++..-
T Consensus 91 aNyikGtV~pvpgGg~~g~as~Kl~F~~G--------G~ieFgq~~l~~~s~a~ 136 (261)
T KOG3294|consen 91 ANYIKGTVQPVPGGGWEGEASFKLTFNEG--------GCIEFGQLLLQAASRAS 136 (261)
T ss_pred cceeeeeEeecCCCCccceeEEEEEecCC--------CchhHHHHHHHHHHHHH
Confidence 356778988777642 3779999999633 34467777777777654
No 92
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=22.57 E-value=3.4e+02 Score=20.42 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=26.7
Q ss_pred eeEEEEeeeCCCcEEEEEEEecCcccceeEEEEEEEEeeC
Q 031700 71 STEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPK 110 (154)
Q Consensus 71 ~kErl~~~D~~~~~~~Y~~ieg~~~~~~~~~~~t~~v~~~ 110 (154)
+||-+-.+++.+....|.+-++.+-..-..|.|.+....+
T Consensus 50 vKE~~~~ynp~~~~~~Y~is~~~l~s~g~KytAk~~~VdK 89 (178)
T PF02087_consen 50 VKEALYHYNPKNKTYFYDISESKLESNGFKYTAKFKTVDK 89 (178)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEEEETTSEEEEEEEEE-T
T ss_pred eEEEEEEecCCCceEEEEeeeeeccCCcceeeeeeeEecC
Confidence 7999999999999999998877653222234444443333
No 93
>PF08868 YugN: YugN-like family; InterPro: IPR014967 This entry contains proteins related to Bacillus subtilis YugN, they are functionally uncharacterised. ; PDB: 2R5X_A 2PWW_A.
Probab=22.53 E-value=85 Score=22.51 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=18.8
Q ss_pred EeCCCCCCChhhHHHHHHHHHHHHHHHH
Q 031700 123 EKASDDVPDPSVIKDFALKNFQEVDDYI 150 (154)
Q Consensus 123 e~~~~~~~~~~~~~~~~~~~~k~ie~~l 150 (154)
+|.+.+..-|.++.+....+++.||..|
T Consensus 104 eP~d~D~~~p~~~v~~~~~~l~ele~~L 131 (132)
T PF08868_consen 104 EPVDKDAEFPEKWVDKGEELLKELEDEL 131 (132)
T ss_dssp ----T-B-EEHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcCCHHHHHHHHHHHHHHHHhh
Confidence 3444444447889999999999999987
No 94
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=21.67 E-value=1.8e+02 Score=19.94 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=31.0
Q ss_pred CCCcEEEEEEcCCCceeeeeeEEEEeeeCCCcEEEEEEEecCcc
Q 031700 52 APGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLL 95 (154)
Q Consensus 52 ~~GsvR~~~~~~G~~~~~~~kErl~~~D~~~~~~~Y~~ieg~~~ 95 (154)
+.|-||.+....++.. -..|-|.+++-..++++|++-+-..+
T Consensus 40 at~~VkkvD~~akKVT--l~He~i~~l~mp~MTM~F~Vkd~a~l 81 (108)
T COG5569 40 ATGVVKKVDLEAKKVT--LHHEPIKNLNMPAMTMVFRVKDQAKL 81 (108)
T ss_pred CccceeeeccccceEE--EeccchhhCCCcceEEEEEeccHHHh
Confidence 3456888877666532 25788899999999999999765443
No 95
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=20.74 E-value=2e+02 Score=17.71 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.7
Q ss_pred eeEEEEeeeCCCcEEEEEE
Q 031700 71 STEKIENVDEANKVVTYKV 89 (154)
Q Consensus 71 ~kErl~~~D~~~~~~~Y~~ 89 (154)
++=++..+|.+++++.-++
T Consensus 53 v~~kV~~id~~~~~i~Ls~ 71 (73)
T cd05703 53 LKAKVVGVDKEHKLLRLSA 71 (73)
T ss_pred EEEEEEEEeCCCCEEEEEe
Confidence 6778889999999887765
No 96
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=20.37 E-value=93 Score=17.82 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=9.1
Q ss_pred CcEEEEEEcCC
Q 031700 54 GSVRLITYADG 64 (154)
Q Consensus 54 GsvR~~~~~~G 64 (154)
|++|.+.|.++
T Consensus 1 GAvR~~kFsP~ 11 (43)
T PF10313_consen 1 GAVRCCKFSPE 11 (43)
T ss_pred CCeEEEEeCCC
Confidence 78999999844
Done!