Query 031701
Match_columns 154
No_of_seqs 106 out of 130
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031701.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031701hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04535 DUF588: Domain of unk 100.0 1.3E-28 2.9E-33 189.8 11.8 131 7-139 1-149 (149)
2 TIGR01569 A_tha_TIGR01569 plan 99.9 3.9E-21 8.4E-26 150.8 10.1 132 14-149 1-152 (154)
3 PF01284 MARVEL: Membrane-asso 98.9 3.8E-08 8.2E-13 72.7 12.0 132 12-146 5-144 (144)
4 KOG4016 Synaptic vesicle prote 77.8 17 0.00036 31.0 8.1 121 13-144 25-163 (233)
5 PF12304 BCLP: Beta-casein lik 63.5 86 0.0019 26.1 9.5 97 49-151 43-162 (188)
6 PTZ00201 amastin surface glyco 28.6 47 0.001 27.4 2.3 50 98-151 50-99 (192)
7 PF06016 Reovirus_L2: Reovirus 23.2 5.5 0.00012 41.1 -4.8 35 85-119 883-919 (1289)
8 PF07344 Amastin: Amastin surf 22.0 1.1E+02 0.0024 23.7 3.2 32 113-148 53-84 (155)
9 COG0833 LysP Amino acid transp 16.6 4.9E+02 0.011 25.0 6.6 56 10-67 369-424 (541)
10 KOG4753 Predicted membrane pro 16.4 2.5E+02 0.0055 21.9 4.0 41 107-147 32-72 (124)
No 1
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=99.96 E-value=1.3e-28 Score=189.79 Aligned_cols=131 Identities=29% Similarity=0.429 Sum_probs=122.5
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHhcCC------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 031701 7 SPGTVSGLMLRIGQCGFAAAAIGAMTSAAG------------FSSYTAFCYLIASMGLQMLWSFGLACLDIYALRRKRDL 74 (154)
Q Consensus 7 ~pGt~~gL~LR~~q~~fa~~sl~~M~s~~~------------F~s~TaF~yLva~~~Lq~lwSl~la~~d~yall~k~~l 74 (154)
++++..+++||+.|++++++|+.+|++++| |+++++|+|+|+++++++.||+.|++.++|.+.+|| .
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~~~~~-~ 79 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSVFSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSLSRGK-L 79 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCcceeeccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-C
Confidence 357789999999999999999999999998 999999999999999999999999999999999999 7
Q ss_pred CCCceeeEeeehhHHHHHHHHhhhhhhhhhHHHhhccC------CCcCCCCcccchhHHHHHHHHHHHHHH
Q 031701 75 QNPVLVSLFVVGDWVTAMLSLAAACSSAGVVVLYAKDL------NFCRPQNNLACHSFEVSVILAFITWLL 139 (154)
Q Consensus 75 ~~~~~~~l~~vGD~v~a~L~~aAAcaaAgitvL~~~d~------~~C~~~~~~fC~~~~~s~amAFlsw~~ 139 (154)
+++...++.+++||+.+||+++|++++++++.+.++|. +.|..++ +||+|+++|++++|++|++
T Consensus 80 ~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~-~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 80 RSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFG-KFCNRAAASVALSFLAFVA 149 (149)
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchh-hHHHHHHHHHHHHHHHHHC
Confidence 77788888999999999999999999999999988884 4699887 8999999999999999974
No 2
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=99.85 E-value=3.9e-21 Score=150.76 Aligned_cols=132 Identities=20% Similarity=0.235 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCC--------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCce
Q 031701 14 LMLRIGQCGFAAAAIGAMTSAAG--------------FSSYTAFCYLIASMGLQMLWSFGLACLDIYALRRKRDLQNPVL 79 (154)
Q Consensus 14 L~LR~~q~~fa~~sl~~M~s~~~--------------F~s~TaF~yLva~~~Lq~lwSl~la~~d~yall~k~~l~~~~~ 79 (154)
+.||+..+.++++|..+|++++| |+++.+|.|+|+++++.+.||+.+....+|.+.+++... .
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~~~~---~ 77 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFVQLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRRVFF---K 77 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeecccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchh---H
Confidence 57999999999999999999854 788999999999999999999999999999988777662 2
Q ss_pred eeEeeehhHHHHHHHHhhhhhhhhhHHHhhccCC------CcCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 031701 80 VSLFVVGDWVTAMLSLAAACSSAGVVVLYAKDLN------FCRPQNNLACHSFEVSVILAFITWLLIAVSSHVMFW 149 (154)
Q Consensus 80 ~~l~~vGD~v~a~L~~aAAcaaAgitvL~~~d~~------~C~~~~~~fC~~~~~s~amAFlsw~~~a~S~l~~~w 149 (154)
.++.++|||+++||+++|++|+++++++.++|.+ .|.+.+ +||+|...|++++|+++++.+.+++++-.
T Consensus 78 ~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~-~FC~~~~~sl~~s~~a~v~~~llsv~Sa~ 152 (154)
T TIGR01569 78 LIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFG-KFCDRIAGSLALSLFAVILLVLLSILSAI 152 (154)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5668999999999999999999999999988854 587776 89999999999999999999999998753
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.91 E-value=3.8e-08 Score=72.66 Aligned_cols=132 Identities=23% Similarity=0.188 Sum_probs=97.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCceeeEeee
Q 031701 12 SGLMLRIGQCGFAAAAIGAMTSAA------GFSSYTAFCYLIASMGLQMLWSFGLACLDIYALRRKRDLQNPVLVSLFVV 85 (154)
Q Consensus 12 ~gL~LR~~q~~fa~~sl~~M~s~~------~F~s~TaF~yLva~~~Lq~lwSl~la~~d~yall~k~~l~~~~~~~l~~v 85 (154)
-...+|+.|++++.+.+..++... ..+..++.-|.+++.++..++++...+.+.+. .|+..+ .......++
T Consensus 5 ~~~ilR~lq~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~~-~~~~~~~~~ 81 (144)
T PF01284_consen 5 PSGILRILQLVFALIIFGLVASSIATGSQIYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS--LKYRPR-IPWPLVEFI 81 (144)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH--Hhcccc-cccchhHHH
Confidence 356899999999999999998776 35667788899999999999999999999988 222222 222223578
Q ss_pred hhHHHHHHHHhhhhhhhhhHHHhhcc--CCCcCCCCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 031701 86 GDWVTAMLSLAAACSSAGVVVLYAKD--LNFCRPQNNLACHSFEVSVILAFITWLLIAVSSHV 146 (154)
Q Consensus 86 GD~v~a~L~~aAAcaaAgitvL~~~d--~~~C~~~~~~fC~~~~~s~amAFlsw~~~a~S~l~ 146 (154)
.|.+.+.+-+++++..+--..-.+.+ .+...++...-|+..+++.+++|++|++-..|..+
T Consensus 82 ~~~v~~il~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~l 144 (144)
T PF01284_consen 82 FDAVFAILWLAAFIALAAYLSDHSCSNTGNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAVL 144 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccCCCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999888776443222211 12222233345999999999999999999888753
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.77 E-value=17 Score=30.99 Aligned_cols=121 Identities=18% Similarity=0.219 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCC--------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 031701 13 GLMLRIGQCGFAAAAIGAMTSAAGF--------------SSYTAFCYLIASMGLQMLWSFGLACLDIYALRRKRDLQNPV 78 (154)
Q Consensus 13 gL~LR~~q~~fa~~sl~~M~s~~~F--------------~s~TaF~yLva~~~Lq~lwSl~la~~d~yall~k~~l~~~~ 78 (154)
..++|+..++|+++-+.-..+ .+| .+-.+=.|=+++-.+..+=++...++|+|-=.......++|
T Consensus 25 ~ti~R~~~~lFsliVf~si~~-eGy~n~~~~~~~~Ciynrn~~ACsyg~avG~~Afla~~~flvlD~~f~qISsv~~Rkr 103 (233)
T KOG4016|consen 25 QTILRVVSWLFSLIVFGSIVN-EGYLNSASSGEEFCIYNRNSNACSYGVAVGVLAFLACLAFLVLDVYFPQISSVKDRKR 103 (233)
T ss_pred hhHHHHHHHHHHHhheeeecc-ccccCcccCCceEEEECCCCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHH
Confidence 468999999999887764433 332 33445569999999999999999999999543333322233
Q ss_pred eeeEeeehhHHHHHH----HHhhhhhhhhhHHHhhccCCCcCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 031701 79 LVSLFVVGDWVTAML----SLAAACSSAGVVVLYAKDLNFCRPQNNLACHSFEVSVILAFITWLLIAVSS 144 (154)
Q Consensus 79 ~~~l~~vGD~v~a~L----~~aAAcaaAgitvL~~~d~~~C~~~~~~fC~~~~~s~amAFlsw~~~a~S~ 144 (154)
. +.+|.+.+-| =|-+=|==+ .....+.=++|+ .--++.+++|+++|+|.+.-..-+
T Consensus 104 a----Vl~Dl~~SalwtflwfvGFc~l~-----nqwqvs~p~~~~-~~a~saraaIafsffSilsW~~~A 163 (233)
T KOG4016|consen 104 A----VLADLGVSALWAFLWFVGFCFLA-----NQWQVSKPKENP-LGAGSARAAIAFSFFSILSWGGQA 163 (233)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHH-----HHhhccCCCCCC-cCcchHHHHHHHHHHHHHHHHHHH
Confidence 3 3356554322 122212111 012222223333 225688999999887755444333
No 5
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=63.51 E-value=86 Score=26.05 Aligned_cols=97 Identities=22% Similarity=0.178 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCc-eeeEeeehhHHHHHHHHhhhhhh-----hhhHHHhhcc-----------
Q 031701 49 SMGLQMLWSFGLACLDIYALRRKRDLQNPV-LVSLFVVGDWVTAMLSLAAACSS-----AGVVVLYAKD----------- 111 (154)
Q Consensus 49 ~~~Lq~lwSl~la~~d~yall~k~~l~~~~-~~~l~~vGD~v~a~L~~aAAcaa-----AgitvL~~~d----------- 111 (154)
++++..-=.+.-....|-+++..|.++++. .|.+++++ ..-.++++||+- ..+|+..+..
T Consensus 43 sNiisv~Sgll~I~~GI~AIvlSrnl~~~~L~W~Ll~~S---~ln~LlSaAc~vGL~~ai~~Tv~~~Gr~Ll~~C~f~~~ 119 (188)
T PF12304_consen 43 SNIISVTSGLLSIICGIVAIVLSRNLRNRPLHWTLLVVS---LLNALLSAACAVGLLLAISLTVANQGRNLLAGCNFTNL 119 (188)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhccCCCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCchhHhhcCCCCCh
Confidence 344444444444556677888888887766 55544332 223456677763 2333332211
Q ss_pred ------CCCcCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031701 112 ------LNFCRPQNNLACHSFEVSVILAFITWLLIAVSSHVMFWIL 151 (154)
Q Consensus 112 ------~~~C~~~~~~fC~~~~~s~amAFlsw~~~a~S~l~~~w~l 151 (154)
.+.||.++ ++=|.++.++=+.+-++.+.=+.+++|-.
T Consensus 120 ~~~~~it~dCPFDp---TRIY~TtL~LW~ps~ll~~~EavfS~rCf 162 (188)
T PF12304_consen 120 NALSSITNDCPFDP---TRIYDTTLALWIPSILLSAVEAVFSVRCF 162 (188)
T ss_pred hhccCCCCCCCCCc---chHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799988 99999999999999999999999988854
No 6
>PTZ00201 amastin surface glycoprotein; Provisional
Probab=28.63 E-value=47 Score=27.40 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=36.3
Q ss_pred hhhhhhhHHHhhccCCCcCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031701 98 ACSSAGVVVLYAKDLNFCRPQNNLACHSFEVSVILAFITWLLIAVSSHVMFWIL 151 (154)
Q Consensus 98 AcaaAgitvL~~~d~~~C~~~~~~fC~~~~~s~amAFlsw~~~a~S~l~~~w~l 151 (154)
-|.+..-+...++.-..|++.. +||+++-|+|.+|=+....++++.+..+
T Consensus 50 ~C~~~~y~~~~~~~w~~C~~rr----~~Fr~aqAfaIISI~v~~aA~vlg~~~l 99 (192)
T PTZ00201 50 ECKSTEYDVTVDMLWANCPARI----LQFRVAQALAVISILVYGAAFVLGLVLL 99 (192)
T ss_pred CCCCCCcCCchHhHHHhChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555544444444445787665 8899999999999999999998876543
No 7
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=23.16 E-value=5.5 Score=41.13 Aligned_cols=35 Identities=43% Similarity=0.384 Sum_probs=23.1
Q ss_pred ehhHHHHHHHHhhhhhhhhhHHH--hhccCCCcCCCC
Q 031701 85 VGDWVTAMLSLAAACSSAGVVVL--YAKDLNFCRPQN 119 (154)
Q Consensus 85 vGD~v~a~L~~aAAcaaAgitvL--~~~d~~~C~~~~ 119 (154)
=+|-++++|+|.||||+++++.+ +++=.+.|.+++
T Consensus 883 ~~D~vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~~ 919 (1289)
T PF06016_consen 883 PFDAVTAILSLGAAAASANVTLDAGLQQFLSQCVQAN 919 (1289)
T ss_dssp --SEEEECTCHHHHHHHCT--HHHHHHHHHHHHHCTT
T ss_pred CCCEEEEEeeehhhhhcCCCcHHHHHHHHHHHHHhCC
Confidence 35888999999999999999954 444455554443
No 8
>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long).In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.
Probab=21.97 E-value=1.1e+02 Score=23.68 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=26.8
Q ss_pred CCcCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 031701 113 NFCRPQNNLACHSFEVSVILAFITWLLIAVSSHVMF 148 (154)
Q Consensus 113 ~~C~~~~~~fC~~~~~s~amAFlsw~~~a~S~l~~~ 148 (154)
.+|++.. +|+|++.+++.+|-+......++.+
T Consensus 53 ~~C~~~~----~~f~aa~afaIisi~~~~~a~v~g~ 84 (155)
T PF07344_consen 53 FNCPQRR----SRFRAAQAFAIISIFVYGAAFVLGV 84 (155)
T ss_pred cCCcHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4897765 8999999999999998888777664
No 9
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=16.60 E-value=4.9e+02 Score=24.98 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=37.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031701 10 TVSGLMLRIGQCGFAAAAIGAMTSAAGFSSYTAFCYLIASMGLQMLWSFGLACLDIYA 67 (154)
Q Consensus 10 t~~gL~LR~~q~~fa~~sl~~M~s~~~F~s~TaF~yLva~~~Lq~lwSl~la~~d~ya 67 (154)
++.|..++..-...+...+++|.+.. .+-+.|-||+++.++...-.-.-.++.=|+
T Consensus 369 ~r~GvP~~al~vt~~fg~lafl~~~~--~~~~vf~wL~~isg~s~~i~W~~I~~shir 424 (541)
T COG0833 369 DRRGVPLVALLVTLLFGLLAFLNSSF--KETTVFNWLLNISGLSGFIAWGSICLSHIR 424 (541)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677666666666677776655 677799999999998877443444444443
No 10
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=16.36 E-value=2.5e+02 Score=21.88 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=34.7
Q ss_pred HhhccCCCcCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 031701 107 LYAKDLNFCRPQNNLACHSFEVSVILAFITWLLIAVSSHVM 147 (154)
Q Consensus 107 L~~~d~~~C~~~~~~fC~~~~~s~amAFlsw~~~a~S~l~~ 147 (154)
..+.|.+.|..+.++|=-+-+.++.++++.-+++.+++++.
T Consensus 32 d~~~~~~~~~s~tr~P~k~i~lavvL~~fg~Lli~lg~fl~ 72 (124)
T KOG4753|consen 32 DIQIDYSYKVSNTRHPVKEIALAVVLLVFGLLLIGLGFFLA 72 (124)
T ss_pred cceeecccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 44667888888877788999999999999999999888775
Done!