Query 031701
Match_columns 154
No_of_seqs 106 out of 130
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 06:06:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031701.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/031701hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qpma_ a.6.1.7 (A:) mu transp 19.9 22 0.0016 22.2 1.6 16 3-18 12-27 (69)
2 d1t4ba2 d.81.1.1 (A:134-354) A 16.3 9.2 0.00067 28.7 -1.1 26 64-89 193-218 (221)
3 d1tnsa_ a.6.1.7 (A:) mu transp 14.9 33 0.0024 21.7 1.6 15 3-17 12-26 (76)
4 d2hjsa2 d.81.1.1 (A:130-319) U 10.6 14 0.00099 27.1 -1.7 26 64-89 162-187 (190)
5 d1u19a_ f.13.1.2 (A:) Rhodopsi 8.1 1.8E+02 0.013 20.2 3.9 57 36-92 28-88 (348)
6 d1mb4a2 d.81.1.1 (A:133-354) A 7.8 16 0.0011 27.4 -2.4 25 65-89 195-219 (222)
7 d1uxya1 d.145.1.2 (A:3-200) Ur 5.7 86 0.0063 22.1 0.9 12 3-14 104-115 (198)
8 d2gz1a2 d.81.1.1 (A:128-329) A 5.0 45 0.0032 24.1 -1.2 22 68-89 178-199 (202)
9 d1ppje2 f.23.12.1 (E:1-69) Iro 5.0 3.6E+02 0.026 16.2 4.6 24 41-64 33-57 (69)
10 d2j4za1 d.144.1.7 (A:126-388) 4.2 2.4E+02 0.018 19.7 2.7 19 55-76 187-205 (263)
No 1
>d1qpma_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=19.92 E-value=22 Score=22.25 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=12.7
Q ss_pred CCCCCCCCcchhHHHH
Q 031701 3 ELVGSPGTVSGLMLRI 18 (154)
Q Consensus 3 ~~~G~pGt~~gL~LR~ 18 (154)
++||+|+|..|+-.|.
T Consensus 12 gLpglP~s~~gv~~~A 27 (69)
T d1qpma_ 12 AADGMPGSVAGVHYRA 27 (69)
T ss_dssp TSTTSCSSHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHH
Confidence 5799999998887553
No 2
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}
Probab=16.29 E-value=9.2 Score=28.71 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHhccCCCCCceeeEeeehhHH
Q 031701 64 DIYALRRKRDLQNPVLVSLFVVGDWV 89 (154)
Q Consensus 64 d~yall~k~~l~~~~~~~l~~vGD~v 89 (154)
|+|--+.|++..++..++++++||++
T Consensus 193 ~V~VGRIR~D~~~~~~l~lw~v~DNL 218 (221)
T d1t4ba2 193 TTPVGRLRKLNMGPEFLSAFTVGDQL 218 (221)
T ss_dssp CCCEEEEEECTTCTTEEEEEEEEETT
T ss_pred CeEEecccccCCCCCEEEEEEEeccc
Confidence 44555667778888899999999985
No 3
>d1tnsa_ a.6.1.7 (A:) mu transposase, DNA-binding domain {Bacteriophage mu [TaxId: 10677]}
Probab=14.93 E-value=33 Score=21.66 Aligned_cols=15 Identities=33% Similarity=0.570 Sum_probs=11.8
Q ss_pred CCCCCCCCcchhHHH
Q 031701 3 ELVGSPGTVSGLMLR 17 (154)
Q Consensus 3 ~~~G~pGt~~gL~LR 17 (154)
++||+|+|..|+-.|
T Consensus 12 gLpglP~s~~gv~~~ 26 (76)
T d1tnsa_ 12 NLPGLPKTSAGVIYV 26 (76)
T ss_dssp TCSSSCSSHHHHHHH
T ss_pred cCCCCCCCHHHHHHH
Confidence 578999999887654
No 4
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=10.63 E-value=14 Score=27.10 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=20.0
Q ss_pred HHHHHHhccCCCCCceeeEeeehhHH
Q 031701 64 DIYALRRKRDLQNPVLVSLFVVGDWV 89 (154)
Q Consensus 64 d~yall~k~~l~~~~~~~l~~vGD~v 89 (154)
++|--+.|++..++..++++++||++
T Consensus 162 ~v~VGRiR~d~~~~~~l~~w~v~Dnl 187 (190)
T d2hjsa2 162 ETYVGRVRAGQADPCQVNLWIVSDNV 187 (190)
T ss_dssp CEEEEEEEECSSCTTEEEEEEEECCC
T ss_pred CEEEEeeEcCCCCCCEEEEEEEeCCc
Confidence 34445567788888899999999974
No 5
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.09 E-value=1.8e+02 Score=20.15 Aligned_cols=57 Identities=19% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCCCceeeEe--eehhHHHHH
Q 031701 36 GFSSYTAFCYLI--ASMGLQMLWSFGLACLDIYALRRKRDLQNPVLVSLF--VVGDWVTAM 92 (154)
Q Consensus 36 ~F~s~TaF~yLv--a~~~Lq~lwSl~la~~d~yall~k~~l~~~~~~~l~--~vGD~v~a~ 92 (154)
+++..+.+-|-+ ..+++.++-++..=++=++.+.++|.+|++...-+. .+.|-..+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~ 88 (348)
T d1u19a_ 28 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVF 88 (348)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHH
Confidence 344444433333 233333333333334446677777777776533322 566665443
No 6
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}
Probab=7.78 E-value=16 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHHHhccCCCCCceeeEeeehhHH
Q 031701 65 IYALRRKRDLQNPVLVSLFVVGDWV 89 (154)
Q Consensus 65 ~yall~k~~l~~~~~~~l~~vGD~v 89 (154)
+|--+.|++...+..+.++++||++
T Consensus 195 V~VGRiR~d~~~~~~l~~wvv~DNL 219 (222)
T d1mb4a2 195 VPVGRLRKMAMGDDFLNAFTVGDQL 219 (222)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEETT
T ss_pred eeeecCEecCCCCCEEEEEEEeccc
Confidence 4444556666677899999999985
No 7
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.72 E-value=86 Score=22.14 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=7.9
Q ss_pred CCCCCCCCcchh
Q 031701 3 ELVGSPGTVSGL 14 (154)
Q Consensus 3 ~~~G~pGt~~gL 14 (154)
-+.|-|||.||.
T Consensus 104 ~l~gIPGtvGGa 115 (198)
T d1uxya1 104 NLALIPGCVGSS 115 (198)
T ss_dssp GGTTCCSBGGGT
T ss_pred hhcccccccchh
Confidence 345777777774
No 8
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=4.98 E-value=45 Score=24.10 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=16.6
Q ss_pred HHhccCCCCCceeeEeeehhHH
Q 031701 68 LRRKRDLQNPVLVSLFVVGDWV 89 (154)
Q Consensus 68 ll~k~~l~~~~~~~l~~vGD~v 89 (154)
-+.|++.-.+..+.++++||++
T Consensus 178 GRiR~d~~~~~~l~~w~v~DNl 199 (202)
T d2gz1a2 178 GRIRKDLDAEKGIHMWVVSDNL 199 (202)
T ss_dssp EEEEECSSCTTEEEEEEEECTT
T ss_pred EeeEcCCCCCCEEEEEEEeccc
Confidence 3455566677789999999985
No 9
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.96 E-value=3.6e+02 Score=16.17 Aligned_cols=24 Identities=17% Similarity=0.330 Sum_probs=14.1
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHH
Q 031701 41 TAFCYLI-ASMGLQMLWSFGLACLD 64 (154)
Q Consensus 41 TaF~yLv-a~~~Lq~lwSl~la~~d 64 (154)
.+|-||+ +.++....|..=-.+.|
T Consensus 33 k~fsYl~~g~~~v~~ay~AK~~V~~ 57 (69)
T d1ppje2 33 KGFSYLVTATTTVGVAYAAKNVVSQ 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhhhhHHHHHHHHHHHHHHH
Confidence 4888987 45555555654444333
No 10
>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.24 E-value=2.4e+02 Score=19.74 Aligned_cols=19 Identities=32% Similarity=0.765 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCC
Q 031701 55 LWSFGLACLDIYALRRKRDLQN 76 (154)
Q Consensus 55 lwSl~la~~d~yall~k~~l~~ 76 (154)
+||+|..+ |.++.++.+.+
T Consensus 187 iwSlGvil---yell~G~~Pf~ 205 (263)
T d2j4za1 187 LWSLGVLC---YEFLVGKPPFE 205 (263)
T ss_dssp HHHHHHHH---HHHHHSSCTTC
T ss_pred hhhHhHHH---HHHhcCCCCCC
Confidence 69988876 67777776643
Done!