BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031704
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 163 bits (413), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 96/119 (80%), Gaps = 2/119 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
RFRTLT SYYRGAQG+I+VYDVTRRDTF L D W E++ Y T D + LVGNK+DK
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDK 133
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 24 SSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 141
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 142 LLVGNKCD 149
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 157 bits (397), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 7 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 124
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 125 LLVGNKCD 132
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGK+ LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 7 SSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 124
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 125 LLVGNKCD 132
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGN
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 128 KVD 130
K D
Sbjct: 120 KCD 122
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 155 bits (393), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGN
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 138
Query: 128 KVD 130
K D
Sbjct: 139 KCD 141
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 155 bits (393), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ + TIGVDFKI+ ++L K +KL IWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT RD+F N+ W +EID Y+ ++ KLLVGN
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKLLVGN 122
Query: 128 KVDKV 132
K D V
Sbjct: 123 KCDLV 127
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLVGN
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 128 KVD 130
K D
Sbjct: 123 KSD 125
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 155 bits (391), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLVGN
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 128 KVD 130
K D
Sbjct: 123 KSD 125
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIG+SGVGKS LLL F+ DT+ + TIGVDFKIK V L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N +W +EID Y+T+ +KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIG+SGVGKS LLL F+ DT+ + TIGVDFKIK V L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N +W +EID Y+T+ +KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIG+SGVGKS LLL F+ DT+ + TIGVDFKIK V L GK +KL IWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N +W +EID Y+T+ +KLLVGN
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 134
Query: 128 KVD 130
K D
Sbjct: 135 KCD 137
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 96/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+D LFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGN
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 128 KVD 130
K D
Sbjct: 120 KCD 122
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 152 bits (384), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 96/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVG
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGI 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 144 bits (364), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/117 (64%), Positives = 91/117 (77%), Gaps = 3/117 (2%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
FRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGNK D
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 115
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 90/116 (77%), Gaps = 3/116 (2%)
Query: 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
LLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGNK D
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 140 bits (353), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 96/133 (72%), Gaps = 12/133 (9%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIW 66
+++D+LFKLL+IGDSGVGKS+LLL F +TF TIGVDFKI+ V + G+K+KL IW
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC---IKL 123
DTAGQERFRT+TS+YYRG G+I+VYDVT ++F N+ W EI NQ+C ++
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRI 117
Query: 124 LVGNKVDKVCPWR 136
LVGNK D P R
Sbjct: 118 LVGNKNDD--PER 128
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 140 bits (352), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/130 (56%), Positives = 94/130 (72%), Gaps = 3/130 (2%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
ASS + + +D + K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK
Sbjct: 9 ASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT TFTN+ W K ++ ++ N +
Sbjct: 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEA 126
Query: 121 IKLLVGNKVD 130
LLVGNK D
Sbjct: 127 QLLLVGNKSD 136
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 138 bits (347), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 92/122 (75%), Gaps = 3/122 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDT 68
+DYLFKLLLIGDSGVGK+ +L F+ D F TIG+DFKI+ + L GK++KL IWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQERFRT+T++YYRGA GI++VYD+T +F N+ + W + I+ +++ D K+++GNK
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNK 122
Query: 129 VD 130
D
Sbjct: 123 CD 124
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 91/122 (74%), Gaps = 3/122 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDT 68
DYLFKLLLIGDSGVGK+ +L F+ D F TIG+DFKI+ + L GK++KL IWDT
Sbjct: 3 MDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 62
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQERFRT+T++YYRGA GI++VYD+T +F N+ + W + I+ +++ D K+++GNK
Sbjct: 63 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNK 120
Query: 129 VD 130
D
Sbjct: 121 CD 122
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 3/121 (2%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
D + K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFRT+T++YYRGA GII+VYD+T TFTN+ W K ++ ++ N + LLVGNK
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 D 130
D
Sbjct: 119 D 119
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 134 bits (338), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 3/121 (2%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
D + K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFRT+T++YYRGA GII+VYD+T TFTN+ W K ++ ++ N + LLVGNK
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 D 130
D
Sbjct: 119 D 119
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 134 bits (336), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 88/121 (72%), Gaps = 3/121 (2%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
D + K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK+KL +WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFRT+T++YYRGA GII+VYDVT TFTN+ W K ++ ++ N + LLVGNK
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 D 130
D
Sbjct: 119 D 119
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 133 bits (335), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 94/126 (74%), Gaps = 3/126 (2%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLA 64
S + D+ ++++IG GVGK++L+ FT DTF E T+GVDFKIK V L GKK++L
Sbjct: 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L W K ID Y++ +D LL
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLL 136
Query: 125 VGNKVD 130
VGNK+D
Sbjct: 137 VGNKLD 142
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 133 bits (334), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/119 (58%), Positives = 87/119 (73%), Gaps = 3/119 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
+ K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK+KL +WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
ERFRT+T++YYRGA GII+VYDVT TFTN+ W K ++ ++ N + LLVGNK D
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSD 123
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 130 bits (326), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 92/126 (73%), Gaps = 3/126 (2%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLA 64
S +++D+LFK++LIG++GVGK+ L+ FT F TIGVDF IK V + G+K+KL
Sbjct: 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 78
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
IWDTAGQERFR++T SYYR A +I+ YD+T ++F L + W +EI+ Y++N+ I +L
Sbjct: 79 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITVL 136
Query: 125 VGNKVD 130
VGNK+D
Sbjct: 137 VGNKID 142
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 91/133 (68%), Gaps = 7/133 (5%)
Query: 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
Q FDY+FKLL+IG+S VGK++ L + DTF T+G+DFK+K V K++KL I
Sbjct: 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
WDTAGQER+RT+T++YYRGA G I++YD+T ++F + D WA +I YS + + +LV
Sbjct: 77 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILV 134
Query: 126 GNKVD----KVCP 134
GNK D +V P
Sbjct: 135 GNKCDMEEERVVP 147
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 128 bits (321), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 3/131 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGK 59
+ S+T+ + Y+FK ++IGD GVGKS LL FT F P TIGV+F + + + G+
Sbjct: 3 LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+ +L TN +
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPN 120
Query: 120 CIKLLVGNKVD 130
+ +L+GNK D
Sbjct: 121 TVIILIGNKAD 131
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 88/122 (72%), Gaps = 3/122 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDT 68
+ YLFK ++IGD+GVGKS LLL FT F+ + TIGV+F + + + GK++KL IWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQE FR++T SYYRGA G ++VYD+TRRDTF +L W ++ +S N + + +L+GNK
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNK 124
Query: 129 VD 130
D
Sbjct: 125 SD 126
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 126 bits (316), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/130 (49%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
A T E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK
Sbjct: 18 AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+K IWDTAGQER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + +
Sbjct: 78 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNI 135
Query: 121 IKLLVGNKVD 130
+ +LVGNK D
Sbjct: 136 VIMLVGNKSD 145
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 125 bits (315), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 88/123 (71%), Gaps = 4/123 (3%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKM-KLAIWD 67
+DYLFK++LIGDSGVGKS LL FT D F E TIGV+F K + L K+ K IWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQER+R +TS+YYRGA G ++VYD+T++++F N+ + W KE+ + + + + LLVGN
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKEL-RDNADSNIVILLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/120 (52%), Positives = 87/120 (72%), Gaps = 3/120 (2%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAG 70
YLFK ++IGD+GVGKS LLL FT F+ + TIGV+F + V + GK++KL IWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QE FR++T SYYRGA G ++VYD+TRR+TF +L W ++ +S++ I +L+GNK D
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVI-MLIGNKSD 137
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 87/122 (71%), Gaps = 3/122 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
FDY+FK+L+IG+S VGK++ L + D+F T+G+DFK+K + K++KL IWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQER+RT+T++YYRGA G I++YD+T ++F + D W+ +I YS + + LLVGNK
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNK 119
Query: 129 VD 130
D
Sbjct: 120 CD 121
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 59/130 (45%), Positives = 90/130 (69%), Gaps = 3/130 (2%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
S +++D+LFKL+L+GD+ VGK+ ++ F + F E TIGVDF +K + + GK+
Sbjct: 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+KL IWDTAGQERFRT+T SYYR A G I+ YD+T+R +F ++ W +++ Y+ +
Sbjct: 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135
Query: 121 IKLLVGNKVD 130
++LL+GNK D
Sbjct: 136 VQLLIGNKSD 145
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 123 bits (308), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMK 62
+T+ + Y+FK ++IGD GVGKS LL FT F P TIGV+F + + + G+K+K
Sbjct: 21 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 80
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQ RFR +T SYYRGA G +MVYD+TRR T+ +L+ +L TN + +
Sbjct: 81 LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVI 138
Query: 123 LLVGNKVD 130
+L+GNK D
Sbjct: 139 ILIGNKAD 146
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/130 (48%), Positives = 89/130 (68%), Gaps = 3/130 (2%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
A T E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK
Sbjct: 18 AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+K IWDTAG ER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + +
Sbjct: 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNI 135
Query: 121 IKLLVGNKVD 130
+ +LVGNK D
Sbjct: 136 VIMLVGNKSD 145
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 122 bits (307), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 87/122 (71%), Gaps = 3/122 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K IWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + + +LVGNK
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 134
Query: 129 VD 130
D
Sbjct: 135 SD 136
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 122 bits (306), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/122 (50%), Positives = 87/122 (71%), Gaps = 3/122 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K IWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + + +LVGNK
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 119
Query: 129 VD 130
D
Sbjct: 120 SD 121
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 89/129 (68%), Gaps = 7/129 (5%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
DY+FKLLLIG+S VGK++ L + D+F T+G+DFK+K V K++KL IWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQER+RT+T++YYRGA G +++YD+ +++F + D WA +I YS + + +LVGNK
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKC 137
Query: 130 D----KVCP 134
D +V P
Sbjct: 138 DLEDERVVP 146
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 87/123 (70%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K IWD
Sbjct: 4 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAG ER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + + +LVGN
Sbjct: 64 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 3/127 (2%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKL 63
T E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K
Sbjct: 3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 62
Query: 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
IWDTAG ER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + +
Sbjct: 63 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIX 120
Query: 124 LVGNKVD 130
LVGNK D
Sbjct: 121 LVGNKSD 127
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 120 bits (300), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 86/123 (69%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K IWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAG ER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + + LVGN
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGN 118
Query: 128 KVD 130
K D
Sbjct: 119 KSD 121
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 84/122 (68%), Gaps = 3/122 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
FDY FK+L+IG+S VGK++ L + D+F T+G+DFK+K + K++KL IWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AG ER+RT+T++YYRGA G I+ YD+T ++F + D W+ +I YS + + LLVGNK
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNK 122
Query: 129 VD 130
D
Sbjct: 123 CD 124
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 87/124 (70%), Gaps = 3/124 (2%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIW 66
+ +D+LFK L+IG++G GKS LL F F++ S TIGV+F K + +GGK +KL IW
Sbjct: 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAGQERFR++T SYYRGA G ++VYD+T R+T+ L + W + + ++ Q+ + +L G
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 123
Query: 127 NKVD 130
NK D
Sbjct: 124 NKKD 127
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 117 bits (292), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 87/124 (70%), Gaps = 3/124 (2%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIW 66
+ +D+LFK L+IG++G GKS LL F F++ S TIGV+F K + +GGK +KL IW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAGQERFR++T SYYRGA G ++VYD+T R+T+ L + W + + ++ Q+ + +L G
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 122
Query: 127 NKVD 130
NK D
Sbjct: 123 NKKD 126
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 115 bits (288), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/121 (51%), Positives = 82/121 (67%), Gaps = 3/121 (2%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTA 69
D+LFK L+IG +G GKS LL F + F++ S TIGV+F + V +GGK +KL IWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFR++T SYYRGA G ++VYD+T R+T+ +LA L S N + +L GNK
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 130 D 130
D
Sbjct: 141 D 141
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 115 bits (287), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/124 (48%), Positives = 84/124 (67%), Gaps = 5/124 (4%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
++DYLFK++LIGDSGVGKS LL FT+D F E TIGV+F + + + KK+K IWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVG 126
TAG ER+R +TS+YYRGA G ++VYD+++ ++ N + W E L D + + L+G
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTE--LRENADDNVAVGLIG 122
Query: 127 NKVD 130
NK D
Sbjct: 123 NKSD 126
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 114 bits (284), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/132 (45%), Positives = 87/132 (65%), Gaps = 5/132 (3%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK 59
M+S ++D LFK++LIGDSGVGKS LL FT + F + TIGV+F + + + GK
Sbjct: 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
++K IWDTAGQER+R +TS+YYRGA G ++VYD+++ ++ N + W E L D
Sbjct: 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSE--LRENADD 117
Query: 120 CIKL-LVGNKVD 130
+ + L+GNK D
Sbjct: 118 NVAVGLIGNKSD 129
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 113 bits (283), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 86/124 (69%), Gaps = 3/124 (2%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIW 66
+ +D+LFK L+IG++G GKS LL F F++ S TIGV+F K + +GGK +KL IW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAG ERFR++T SYYRGA G ++VYD+T R+T+ L + W + + ++ Q+ + +L G
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 120
Query: 127 NKVD 130
NK D
Sbjct: 121 NKKD 124
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 82/123 (66%), Gaps = 4/123 (3%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
+D FK++L+GDSGVGK+ LL+ F F T+G+DF+ K + + G K+KL +WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFR++T +YYR A ++++YDVT + +F N+ W EI Y+ D +L+GN
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYA-QHDVALMLLGN 124
Query: 128 KVD 130
KVD
Sbjct: 125 KVD 127
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 85/125 (68%), Gaps = 5/125 (4%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
++++++FK++LIG+SGVGK+ LL FT + F S TIGV+F + V LG +K IW
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 64
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLV 125
DTAG ER+R +TS+YYRGA G ++V+D+T+ T+ + + W KE LY + I +LV
Sbjct: 65 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLV 121
Query: 126 GNKVD 130
GNK D
Sbjct: 122 GNKSD 126
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 108 bits (270), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 85/125 (68%), Gaps = 5/125 (4%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
++++++FK++LIG+SGVGK+ LL FT + F S TIGV+F + V LG +K IW
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLV 125
DTAG ER+R +TS+YYRGA G ++V+D+T+ T+ + + W KE LY + I +LV
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLV 136
Query: 126 GNKVD 130
GNK D
Sbjct: 137 GNKSD 141
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 74/118 (62%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+ L+GD+GVGKS+++ F D F+ +SPTIG F K V G + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RF +L YYRG+ ++VYD+T++D+F L W KE+ + ++ + + GNK D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCD 139
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 103 bits (258), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 3/120 (2%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
Y FK++L+G+ VGK++L+L + + F + T+G F K + +GGK++ LAIWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QERF L YYR + G I+VYD+T D+F + + W KE+ N+ C+ +VGNK+D
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
KL+L+G++ VGKS+++L F S+ F E PTIG F + V + +K IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RF +L YYR AQ ++VYDVT+ +F A W KE+ ++ +D I LVGNK+D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELHEQAS-KDIIIALVGNKID 119
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++TF A W KE+ ++ I L GNK D
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIA-LAGNKAD 124
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/118 (46%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T DTF A W KE+ ++ + + L GNK D
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQAS-PNIVIALAGNKAD 119
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
Y FK++L+G+ VGK++L+L + + F + T+ F K + +GGK++ LAIWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QERF L YYR + G I+VYD+T D+F + + W KE+ N+ C+ +VGNK+D
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 136
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
Y FK++L+G+ VGK++L+L + + F + T+ F K + +GGK++ LAIWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QERF L YYR + G I+VYD+T D+F + + W KE+ N+ C+ +VGNK+D
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 100 bits (249), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+ L+GD+GVGKS+++ F D+F+ ++PTIG F K V + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFR L YYRG+ I+VYD+T+ +TF+ L + W +E+ + + + GNK D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCD 121
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 100 bits (248), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 85/135 (62%), Gaps = 16/135 (11%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK-------- 59
++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 60 --KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYS 115
K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W ++ + Y
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYC 139
Query: 116 TNQDCIKLLVGNKVD 130
N D + L+GNK D
Sbjct: 140 ENPDIV--LIGNKAD 152
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 80/118 (67%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+K++L GD+ VGKS+ L+ + F E +S T+GVDF++K + + G++ L +WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFR++ SY+R A G++++YDVT +F N+ + W I+ + ++ +LVGNK D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPIMLVGNKAD 144
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 99.8 bits (247), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 123
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 75/120 (62%), Gaps = 3/120 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
+FK+++IGDS VGK+ L F + F + + TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 72 ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
ERFR ++ YYR ++ VYD T +F +L W +E + D ++LVGNK D
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 147
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 99.4 bits (246), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 123
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 99.4 bits (246), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 99.0 bits (245), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%), Gaps = 3/120 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
+FK+++IGDS VGK+ L F + F + + TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 72 ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
ERFR ++ YYR ++ VYD+T +F +L W +E + D ++LVGNK D
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 138
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 99.0 bits (245), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TI F + V L +K IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T DTF A W KE+ ++ + + L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQAS-PNIVIALAGNKAD 121
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T DTF A W KE+ ++ + + L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQAS-PNIVIALAGNKAD 121
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 89/138 (64%), Gaps = 12/138 (8%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
S S ++DYL K L +GDSGVGK+++L +T F + T+G+DF+ K V
Sbjct: 2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 55 -ALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID 112
A+G G+++ L +WDTAG ERFR+LT++++R A G ++++D+T +F N+ + W ++
Sbjct: 62 GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120
Query: 113 LYSTNQDCIKLLVGNKVD 130
+++ +++ +L GNK D
Sbjct: 121 MHAYSENPDIVLCGNKSD 138
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+ L+GD+GVGKS+++ F D+F+ ++PTIG F K V + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFR L YYRG+ I+VYD+T+ +TF+ L + W +E+ + + + GNK D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCD 122
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 97.4 bits (241), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 122
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 96.7 bits (239), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 87/140 (62%), Gaps = 16/140 (11%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
S + ++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V
Sbjct: 2 SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55 ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
GK K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVD 130
+ Y N D + L+GNK D
Sbjct: 121 ANAYCENPDIV--LIGNKAD 138
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 87/140 (62%), Gaps = 16/140 (11%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
S + ++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V
Sbjct: 2 SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55 ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
GK K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVD 130
+ Y N D + L+GNK D
Sbjct: 121 ANAYCENPDIV--LIGNKAD 138
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKAD 121
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 95.9 bits (237), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 16/140 (11%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
S + ++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V
Sbjct: 2 SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55 ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
GK K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVD 130
+ Y N D + L+GNK D
Sbjct: 121 ANAYCENPDIV--LIGNKAD 138
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 95.9 bits (237), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 86/140 (61%), Gaps = 16/140 (11%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
S + ++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V
Sbjct: 2 SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55 ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
GK K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVD 130
+ Y N D + L+GNK D
Sbjct: 121 ANAYCENPDIV--LIGNKAD 138
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+ +G+ VGK++++ F DTF+ TIG+DF K + L ++L +WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFR+L SY R + I+VYD+T R +F N W ++I L +D I LVGNK D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTD 117
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 3/117 (2%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+GD G GKS+L+L F D F E TIG F + +A+ +K IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ +L YYRGA I+V+DVT + +F A W +E+ N + + L GNK D
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQG-NPNMVMALAGNKSD 128
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 94.0 bits (232), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 80/123 (65%), Gaps = 5/123 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++L+GD GVGKS+L+ + ++ F+ + TIGV+F + + + G+ + L IWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L + +YRGA ++ + V R +F NL + W KE Y+ +D +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 129 VDK 131
VDK
Sbjct: 126 VDK 128
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++GDSGVGK++L+ + + F + TIG DF K V + + + + IWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L ++YRGA ++V+DVT +TF L D W E + ++ +D +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VD 130
+D
Sbjct: 127 ID 128
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 92.8 bits (229), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++GDSGVGK++L+ + + F + TIG DF K V + + + + IWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L ++YRGA ++V+DVT +TF L D W E + ++ +D +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VD 130
+D
Sbjct: 127 ID 128
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 92.4 bits (228), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 78/122 (63%), Gaps = 5/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++GDSGVGK++L+ + + F + TIG DF K V + + + + IWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L ++YRGA ++V+DVT +TF L D W E + ++ +D +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VD 130
+D
Sbjct: 127 ID 128
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 80/122 (65%), Gaps = 5/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
LFK++L+GD GVGKS+L+ + ++ F+ +L TIGV+F K + + G + + IWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERFR+L + +YRG+ ++ + V +F NL++ W KE Y+ ++ +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 125
Query: 129 VD 130
+D
Sbjct: 126 ID 127
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 80/122 (65%), Gaps = 5/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
LFK++L+GD GVGKS+L+ + ++ F+ +L TIGV+F K + + G + + IWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERFR+L + +YRG+ ++ + V +F NL++ W KE Y+ ++ +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 127
Query: 129 VD 130
+D
Sbjct: 128 ID 129
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 79/124 (63%), Gaps = 8/124 (6%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK-LAIWDTAG 70
+ K++++GDSGVGK++L+ + +D + ++ TIG DF K V + G K+ + +WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVG 126
QERF++L ++YRGA ++VYDVT +F N+ W E L N + + +++G
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEF-LVHANVNSPETFPFVILG 125
Query: 127 NKVD 130
NK+D
Sbjct: 126 NKID 129
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 79/122 (64%), Gaps = 5/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
LFK++L+GD GVGKS+L+ + ++ F+ +L TIGV+F K + + G + + IWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERFR+L + +YRG+ ++ + V +F NL++ W KE Y+ ++ +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 129
Query: 129 VD 130
D
Sbjct: 130 TD 131
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 89.4 bits (220), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 5/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++GDSGVGK++L+ + + F + TIG DF K V + + + + IWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L ++YRGA ++V+DVT +TF L D W E + ++ +D +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VD 130
+D
Sbjct: 127 ID 128
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 122
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F +K ID T + D I +LVGNK D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQT----SKWIDDVRTERGSDVIIMLVGNKTD 118
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 7/120 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 117
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/120 (41%), Positives = 74/120 (61%), Gaps = 7/120 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F +K ID T + D I +LVGNK D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQT----SKWIDDVRTERGSDVIIMLVGNKTD 130
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 129
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 83.2 bits (204), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 72/120 (60%), Gaps = 7/120 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 122
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 82.4 bits (202), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 70/118 (59%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F W ++ D I +LVGNK D
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDV-RTERGSDVIIMLVGNKTD 132
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 81/145 (55%), Gaps = 7/145 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K++++G+ VGKS+++ + F ++ TIGVDF + + + + ++L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
F +T +YYRGAQ ++V+ T R++F ++ W +++ + D LV NK+D +
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKIDLL 122
Query: 133 ---CPWRLFLSGFWHFLLSKFYCSS 154
C G L +FY +S
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTS 147
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ PT+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 80.9 bits (198), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ PT+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 79.3 bits (194), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
Query: 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGK 59
+S +Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G
Sbjct: 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-- 62
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
+K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 119
Query: 120 CIKLLVGNKVD 130
+L GNKVD
Sbjct: 120 IPIVLCGNKVD 130
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ I + + GK+++LA+WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 140
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 79.0 bits (193), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ I + + GK+++LA+WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII--LVGNKKD 140
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 121
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 122
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 121
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 123
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 124
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 8/131 (6%)
Query: 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLL-LSFTSDTFEELSPTIGVDFK--IKHVALGGK 59
+S +Q E FKL+L+GD G GK+T + T ++ ++ T+GV+ + H G
Sbjct: 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRG-- 62
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
+K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 119
Query: 120 CIKLLVGNKVD 130
+L GNKVD
Sbjct: 120 IPIVLCGNKVD 130
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 122
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 67/117 (57%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 122
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 76
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 134
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 64
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 122
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 72
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 130
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 71/119 (59%), Gaps = 3/119 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 120
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + V D+ N+ + W E+ + N I LV NK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKD 140
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 65
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL-VGNKVD 130
E + + +Y+R +G ++V+ +T ++FT A+ + ++I +D I LL VGNK D
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 124
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K + +GD VGK+ +L+S+TS+TF + PT+ +F +V + G + L +WDTAGQE
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L YRGA I+ + + + ++ N+A W E+ Y+ I LVG K+D
Sbjct: 66 DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLD 121
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 76.6 bits (187), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+ +DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 72/120 (60%), Gaps = 4/120 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 61
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL-VGNKVD 130
E + + +Y+R +G ++V+ +T ++FT A+ + ++I +D I LL VGNK D
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 120
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 76.3 bits (186), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQ 71
K++++GD GK++L F +TF ++ TIG+DF ++ + L G + L IWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW--AKEIDLYSTNQDCIKLLVGNKV 129
+ Y GAQG+++VYD+T +F NL D + K++ S Q + LVGNK+
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-LVGNKI 125
Query: 130 D 130
D
Sbjct: 126 D 126
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ I + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K + +GD VGK+ LL+S+TS+TF + PT+ +F +V + G + L +WDTAGQE
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L YRGA I+ + + + ++ N++ W E+ Y+ + LVG K+D
Sbjct: 68 DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLD 123
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE++ L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 75.9 bits (185), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGG 58
S +Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G
Sbjct: 1 GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG- 59
Query: 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118
+K +WDTAG E+F L YY AQ I+++DVT R T+ N+ + W + DL +
Sbjct: 60 -PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCE 115
Query: 119 DCIKLLVGNKVD 130
+ +L GNKVD
Sbjct: 116 NIPIVLCGNKVD 127
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 118
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 118
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 8/120 (6%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAG 70
FKL+L+GD G GK+T + + FE+ T+GV+ + H G +K +WDTAG
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIKFNVWDTAG 61
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 118
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIG-VDFKIKHVALGGKKMKL 63
S + + +K+ LIGD GVGK+T + FE+ + T+G V+ + + G +K
Sbjct: 4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63
Query: 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
+WDTAGQE+ L YY GA G I+ +DVT R T NLA W KE N+ I +
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI-V 121
Query: 124 LVGNKVD 130
+ NK+D
Sbjct: 122 VCANKID 128
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + F F E+ PTI ++ K V + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+F + Y + QG +VY +T + TF +L D+ + + + T+ D +LVGNK D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCD 119
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + F F +E PTI ++ K V + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+F + Y + QG +VY +T + TF +L D+ + + + T +D +LVGNK D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCD 119
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + F F E+ PTI ++ K V + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+F + Y + QG +VY +T + TF +L D+ + + + T +D +LVGNK D
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCD 119
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + F F E+ PTI ++ K V + ++ L I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+F + Y + QG +VY +T + TF +L D+ + + + T+ D +LVGNK D
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCD 121
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F + PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 120
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 74.3 bits (181), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%), Gaps = 3/119 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 64
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSD 122
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 73.9 bits (180), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 8/129 (6%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAG E+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVD 130
+L GNKVD
Sbjct: 117 IVLCGNKVD 125
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+GD G GK+T + + FE+ TIGV+ ++K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 119
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+GD G GK+T + + FE+ TIGV+ ++K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 120
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGK 59
M++ + E FKL+L+GD G GK+T + + FE+ TIGV+
Sbjct: 1 MSAPAANGEVP-TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 59
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
++K +WDTAG E+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCEN 116
Query: 120 CIKLLVGNKVD 130
+L GNKVD
Sbjct: 117 IPIVLCGNKVD 127
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 72.8 bits (177), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
SS + + K +++GD VGK+ LL+S+ +D F EE PT+ D V +GGK+
Sbjct: 8 SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQY 66
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
L ++DTAGQE + L Y ++ + V +F N+ + W E+ Y+ N
Sbjct: 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-- 124
Query: 122 KLLVGNKVD 130
LL+G ++D
Sbjct: 125 FLLIGTQID 133
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 8/120 (6%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAG 70
FKL+L+GD G GK+T + + FE+ T+GV+ + H G +K +WDTAG
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIKFNVWDTAG 64
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 121
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKD 123
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 68/117 (58%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++L+GD G GK++LL+ F F E +PT+ + + ++ + GK + L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L +Y A +++ +DVT ++F N+ + W E++ + I +VG K D
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII--VVGCKTD 149
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 42/156 (26%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGK------------- 59
+K +L+G+S VGKS+++L T DTF E + TIG F V L
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 60 ------------------------KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 95
+K IWDTAGQER+ ++ YYRGA I+V+D++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 96 RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
+T + A W ++ + S + I +LV NK+DK
Sbjct: 128 NSNTL-DRAKTWVNQLKISS---NYIIILVANKIDK 159
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 68/126 (53%), Gaps = 4/126 (3%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLA 64
S K + +GD VGK+ +L+ +TS+ F + PT+ +F +VA+ G+ + L
Sbjct: 2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLG 60
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
+WDTAGQE + L YRGA ++ + + + ++ N+ W E+ ++ N + L
Sbjct: 61 LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--L 118
Query: 125 VGNKVD 130
VG K+D
Sbjct: 119 VGTKLD 124
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K + +GD VGK+ +L+S+T +TF + PT+ +F +V + G + L +WDTAGQE
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L YRGA ++ + + + ++ N+ W E+ Y+ + LVG K+D
Sbjct: 66 DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLD 121
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCD 120
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSD-- 120
Query: 133 CPWR 136
P R
Sbjct: 121 LPSR 124
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK 59
M SS K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+
Sbjct: 1 MGSSHHHHHHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGE 59
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L ++DTAGQE + L Y ++ + V +F N+ + W EI
Sbjct: 60 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THH 114
Query: 120 CIK---LLVGNKVD 130
C K LLVG ++D
Sbjct: 115 CPKTPFLLVGTQID 128
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 66.6 bits (161), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 145
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 66.2 bits (160), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 66.2 bits (160), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 130 D 130
D
Sbjct: 120 D 120
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 137
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 125
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 130 D 130
D
Sbjct: 121 D 121
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 72
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 128
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 118
Query: 130 D 130
D
Sbjct: 119 D 119
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 120
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 130 D 130
D
Sbjct: 121 D 121
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 122
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 130 D 130
D
Sbjct: 120 D 120
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 130 D 130
D
Sbjct: 122 D 122
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 130 D 130
D
Sbjct: 125 D 125
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 130 D 130
D
Sbjct: 125 D 125
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + + LLVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLD 118
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + F E+ PT+ ++ + V + G++++LA+WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y + +++ + + D+ N+ + W E+ + Q +LVG KVD
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QGVPIILVGCKVD 125
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ E PT+ D +V + GK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 145
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E P + ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + + LLVG K+D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLD 119
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + + LLVG K+D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLD 119
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 118
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 121
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 89
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLD 145
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D 130
D
Sbjct: 118 D 118
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 10/121 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 130 D 130
D
Sbjct: 122 D 122
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K +L+GD VGK++L++S+T++ + E PT +F V++ G+ ++L + DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
F L Y ++ + V +F N+++ W EI + I LVG + D
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII--LVGTQSD 135
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + L Y ++ + + +F ++ W E+ + N I LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLD 270
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + L Y ++ + + +F ++ W E+ + N I LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLD 270
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 4/119 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + L Y ++ + + +F ++ W E+ + N I LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLD 270
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + K + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + ++ N+ W E+ + + I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLD 118
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 23/137 (16%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADI-------------------WAKEIDL 113
+ L Y G D+T R +AD+ W E+
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 114 YSTNQDCIKLLVGNKVD 130
+ N I LVG K+D
Sbjct: 125 HCPNTPII--LVGTKLD 139
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-ALGGKKMKLAIWDTAGQ 71
K++++GD VGK+ LLL+F+ PT+ +F HV ++ L +WDTAGQ
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS--HVMKYKNEEFILHLWDTAGQ 81
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + L Y + +++ + V R +F N++ W EI Y + LVG KVD
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVD 138
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++++GDS GK+ LL F D F E PT+ ++ + ++++L++WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 67
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y + +++ +D++R +T ++ W EI + N LLVG K D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSD 122
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++++GDS GK+ LL F D F E PT+ ++ + ++++L++WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 88
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y + +++ +D++R +T ++ W EI + N LLVG K D
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSD 143
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-ALGGKKMKLAIWDTAGQ 71
K++++GD VGK+ LLL+F+ PT+ +F HV ++ L +WDTAGQ
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS--HVMKYKNEEFILHLWDTAGQ 80
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E + L Y + +++ + V R +F N++ W EI Y + LVG KVD
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVD 137
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 59.7 bits (143), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++++GDS GK+ LL F D F E PT+ ++ + ++++L++WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y + +++ +D++R +T ++ W EI + N LLVG K D
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSD 138
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + K + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + ++ N+ W E+ + + I LVG K+D
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLD 124
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 59.3 bits (142), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + K + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ L Y ++ + + ++ N+ W E+ + + I LVG K+D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLD 125
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ+R
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L Y++ QG+I V D R+ +AD K + L +D + LL NK D
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQD 129
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K+ ++G VGKS+L + F F + PTI F K + + G++ L + DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ +Y G I+VY VT +F + I K +D+ Q I +LVGNK D
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K+ ++G VGKS+L + F F + PTI F K + + G++ L + DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ +Y G I+VY VT +F + I K +D+ Q I +LVGNK D
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 120
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K+ ++G VGKS+L + F F + PTI F K + + G++ L + DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ +Y G I+VY VT +F + I K +D+ Q I +LVGNK D
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K+ ++G VGKS+L + F F + PTI F K + + G++ L + DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ +Y G I+VY VT +F + I K +D+ Q I +LVGNK D
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 117
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++++G VGK++L F F E PT+ + K V LG + L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133
+ L S+ G G ++VY VT +F + ++ K + + + + +LVGNK D +
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKAD-LS 142
Query: 134 PWR 136
P R
Sbjct: 143 PER 145
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K + +WD GQ+R
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
R+L YYR +G+I V D R A+E+ N+D ++ L+ NK
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 130 D 130
D
Sbjct: 112 D 112
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K + +WD GQ+R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
R+L YYR +G+I V D R A+E+ N+D ++ L+ NK
Sbjct: 74 IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 128
Query: 130 D 130
D
Sbjct: 129 D 129
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 56.6 bits (135), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K + +WD GQ+R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
R+L YYR +G+I V D R A+E+ N+D ++ L+ NK
Sbjct: 74 IRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 130 D 130
D
Sbjct: 129 D 129
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
+ + Y R +G + V+ + +F ++ +++ ++I + D +LVGNK D
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCD-- 137
Query: 133 CPWRLFLSGFWHFLLSKF 150
P R + H L +
Sbjct: 138 LPTRTVDTKQAHELAKSY 155
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 56.2 bits (134), Expect = 7e-09, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 324 RILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 379
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 380 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 434
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 58/107 (54%), Gaps = 3/107 (2%)
Query: 25 GKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83
GKS L + F + TF E+ PTI DF K + + L I DTAG E+F ++ Y +
Sbjct: 15 GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK 73
Query: 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QG I+VY + + +F ++ + + I + + + +LVGNKVD
Sbjct: 74 NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVD 119
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+LL++G GK+T+L F + + +SPT+G + K L + KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 72
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLADIWAKE------IDLYSTNQDCIKL 123
R+ +Y+ G+I V D R D L + +E + +++ QD
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 132
Query: 124 LVGNKVDKVCPWRLFLSGFW 143
L N + +V S W
Sbjct: 133 LSSNAIREVLELDSIRSHHW 152
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 68
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 124
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 69
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+++ + G GVGKS+L+L F TF E PT+ ++ + ++ L I DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
+F + I+VY +T R + L I+ + ++ + +LVGNK D+
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE- 121
Query: 133 CPWRLFLSGFWHFLLSKFYCS 153
P R S L + C+
Sbjct: 122 SPSREVQSSEAEALARTWKCA 142
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+LL++G GK+T+L F + + +SPT+G + K L + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTN 102
R+ +Y+ G+I V D R +
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQD 103
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA+S E +KL+++GD GVGKS L + F F +E PTI ++ KH + +
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQ 64
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + I +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVD 130
+LV NKVD
Sbjct: 124 FPMILVANKVD 134
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA+S E +KL+++GD GVGKS L + F F E PTI D +KH + +
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQ 64
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + I +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVD 130
+LV NKVD
Sbjct: 124 FPMILVANKVD 134
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+LL++G GK+T+L F + + +SPT+G + K L + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTN 102
R+ +Y+ G+I V D R +
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQRMQD 103
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++L +G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 57
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 58 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREX-RDAIILIFANKQD 112
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
D ++LL+G GK+TLL S+ ++PT G F IK V G KL +WD G
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGG 70
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
Q + R SY+ +I V D R F
Sbjct: 71 QRKIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
D ++LL+G GK+TLL S+ ++PT G F IK V G KL +WD G
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGG 69
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
Q + R SY+ +I V D R F
Sbjct: 70 QRKIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 76
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L Y++ QG+I V D RD D + ++ +D + L+ NK D
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQD 132
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSD 120
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSD 120
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA+S E +KL+++GD GVGKS L + F F ++ PTI D +KH + +
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQ 64
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + I +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVD 130
+LV NKVD
Sbjct: 124 FPMILVANKVD 134
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 124
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 53.1 bits (126), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 124
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F E+ PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 52.8 bits (125), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSD 119
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 52.8 bits (125), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 126
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA+S E +KL+++GD GVGKS L + F F + PTI D +KH + +
Sbjct: 1 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQ 59
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + I +
Sbjct: 60 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 118
Query: 120 CIKLLVGNKVD 130
+LV NKVD
Sbjct: 119 FPMILVANKVD 129
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSD 119
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL + G +GVGKS L++ F + F E PT+ ++ + + + + I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED 88
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ R +G ++VYD+T R +F + + +D ++ +LVGNK D
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLILVGNKAD 143
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+ +LL++G GK+T+L F + + +SPT+G + K L + KL IWD G +
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGLK 56
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRR 97
R+ +Y+ G+I V D R
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADR 81
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDK 85
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L Y++ QG+I V D R+ AD K + +D + L+ NK D
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQD 141
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGN+ D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNRCD 119
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGK+ L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCD 137
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E P+I ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+GD GK+ +L D + E PT+ ++ + ++++L++WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y + +++ +D++R +T + W EI Y + LL+G K D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTD 126
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++LL+G GK+TLL S+ ++PT G F IK V G KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKI 61
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTF 100
R SY+ +I V D R F
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E P+I ++ K V + G+ L I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 125
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD G ++
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 59
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 60 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 115
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD G ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 69
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+GD GK+ +L D + E PT+ ++ + ++++L++WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y + +++ +D++R +T + W EI Y + LL+G K D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTD 125
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD G ++
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 59 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 114
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+GD GK+ +L D + E PT+ ++ + ++++L++WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y + +++ +D++R +T + W EI Y + LL+G K D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTD 142
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 21/151 (13%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+++L PTIG F ++ V K + +WD GQ++
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD----CIKLLVGNKV 129
R L YY+ Q II V D RD A+E + N+D I L+ NK
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGE-----AREELMKMLNEDEMRNAILLVFANKH 128
Query: 130 DKVCPWRLFLS------GFWHFLLSKFYCSS 154
D P + +S G K+YC +
Sbjct: 129 D--LPQAMSISEVTEKLGLQTIKNRKWYCQT 157
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 26 KSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
KS L + F F + PTI D K ++ G +L I DTAGQE F + Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
G ++V+ + R +F + ++ + + + + D +LVGNK D
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKAD 125
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
K++++G GK+T+L F+ + SPTIG + ++ + + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLMWDIGGQESL 73
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFT 101
R+ ++YY + +I+V D T R+ +
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRERIS 100
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
K++++G GK+T+L F+ + SPTIG + ++ + + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLMWDIGGQESL 73
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFT 101
R+ ++YY + +I+V D T R+ +
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRERIS 100
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F ++ PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+L L+G GK+T + S F E++ PT+G F ++ V G +K IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFR++ Y RG I+ + D R+ + +D Q L++GNK D
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL-QGIPVLVLGNKRD 135
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
K++++G GK+T+L F + SPTIG + ++ + + K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSN--VEEIVV--KNTHFLMWDIGGQESL 73
Query: 75 RTLTSSYYRGAQGIIMVYD--------VTRRDTFTNLA--DIWAKEIDLYSTNQDCIKLL 124
R+ ++YY + II+V D +T+ + + LA D+ + +++ QD +
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 125 VGNKVDKVCPWRLFLSGFWHF 145
++ K WH
Sbjct: 134 TAAEISKYLTLSSIKDHPWHI 154
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXD 119
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXD 119
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAI 65
S QE K++++G GK+T+L F+ + SPTIG + ++ + + + +
Sbjct: 19 SHQEH----KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLM 70
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT 101
WD GQE R+ ++YY + +I+V D T R+ +
Sbjct: 71 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERIS 106
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 4/87 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
K++++G GK+T+L F+ + SPTIG + ++ + + + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVI--NNTRFLMWDIGGQESL 78
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFT 101
R+ ++YY + +I+V D T R+ +
Sbjct: 79 RSSWNTYYTNTEFVIVVVDSTDRERIS 105
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG + + L K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 74
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVD 130
R YY +I V D T +D + +KE+ L QD L+ NK D
Sbjct: 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTA----SKELHLMLQEEELQDAALLVFANKQD 130
Query: 131 K 131
+
Sbjct: 131 Q 131
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 26 KSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
KS L + F F + PTI D K + + +L I DTAGQE F + Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+G ++V+ VT R +F + + ++I + +L+GNK D
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKAD 121
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 124
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 10 FDYLF-----KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLA 64
F+ LF ++L++G GK+T+L PTIG F ++ V + +
Sbjct: 9 FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIG--FNVETVEF--RNISFT 64
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
+WD GQ++ R L YY G+I V D R+ + + + I+ +D I L+
Sbjct: 65 VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEEL-KDAIILV 123
Query: 125 VGNKVD 130
NK D
Sbjct: 124 FANKQD 129
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCD 119
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 221
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG + + + +WD GQ+R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYC----NISFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
R+L YY +G+I V D R A+E+ N+D
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNED 114
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
L++++L+GD GVGK++L F +L +G D + + + G+ L + DT E
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 73 RFRT--LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ-DCIK-LLVGNK 128
+ S +G ++VY + R +F + +++ I L T+Q D + +LVGNK
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNK 120
Query: 129 VD 130
D
Sbjct: 121 AD 122
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 72
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRE 97
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRE 98
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+L L+G GK+T + S F E++ PT+G F ++ + G +KL WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFR++ Y RG I+ + D ++ + +D Q L++GNK D
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL-QGIPVLVLGNKRD 144
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 24 VGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83
GK+T+L F + + +SPT+G + K L + KL IWD GQ+ R+ +Y+
Sbjct: 29 AGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 84 GAQGIIMVYDVTRR 97
G+I V D R
Sbjct: 85 STDGLIWVVDSADR 98
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++LL+G GK+TLL S+ ++PT G F IK V G KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRKI 61
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTF 100
R SY+ +I V D R F
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+L L+G GK+T + S F E++ PT+G F ++ + G +KL WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFR++ Y RG I+ + D ++ + +D Q L++GNK D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL-QGIPVLVLGNKRD 135
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD G ++
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGLDK 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRE 83
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL---SPTIGVDFKIKHVALGGKKMK---LAIWDT 68
KL ++G++G GK+TLL +L S T+G+D K + + K+ + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AG+E F + + + VYD+++ + W I +++ I LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 119
Query: 129 VD 130
+D
Sbjct: 120 LD 121
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL---SPTIGVDFKIKHVALGGKKMK---LAIWDT 68
KL ++G++G GK+TLL +L S T+G+D K + + K+ + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AG+E F + + + VYD+++ + W I +++ I LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 121
Query: 129 VD 130
+D
Sbjct: 122 LD 123
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K +K +WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R YY +I V D RD
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 43.5 bits (101), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 16 LLLIGDSGVGKSTLL--LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+L +G GK+T++ L ++ + + PTIG F I+ + ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIE--KFKSSSLSFTVFDMSGQGR 79
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDL--YSTNQDCI 121
+R L YY+ Q II V D + R DT N DI + I + ++ D
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139
Query: 122 KLLVGNKVDKVCPWRLFLSGFWHFLLS 148
+ KV ++ WH S
Sbjct: 140 DAVTSVKVSQLLCLENIKDKPWHICAS 166
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDT---FEELSPTIGVDFKIKHVALGGK--KMKLAIWDTA 69
K+ ++G++ VGKS L+ FTS ++ + T GV+ + V + ++L + DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
G + ++ S Y+ G I+V+DV+ ++F
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESF 112
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Query: 7 QQEFDYLFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKL 63
Q + D +FK++L+G+SGVGKSTL +F D+ E P D + + + +++ L
Sbjct: 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMVDKEEVTL 74
Query: 64 AIWDTAGQERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
++D Q L + ++V+ VT R +F+ + + + + + D
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPV 133
Query: 123 LLVGNKVD 130
+LVGNK D
Sbjct: 134 ILVGNKSD 141
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K +K +WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 60
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R YY +I V D RD
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++L++G G GK+T+L PTIG F ++ V K +K +WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTSI 64
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
R YY +I V D RD
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 26 KSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
KS+L+L F TF + PTI ++ + ++ L I DT G +F +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
I+V+ VT + + L I+ + + + +D +LVGNK D+
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 14 FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK---LAIWDT 68
++++LIG+ GVGKSTL + + D+ + +G D + + + G+ L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
G+ + L + ++VY +T R +F +++ I L Q D +LVG
Sbjct: 67 KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKV 132
NK D V
Sbjct: 122 NKSDLV 127
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 3 SSTSQQEFDYLFKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
S S + + ++++LIG+ GVGKSTL + + D+ + +G D + + + G+
Sbjct: 27 SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 61 MK---LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN 117
L +W+ G+ + L + ++VY +T R +F +++ I L
Sbjct: 87 ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRAR 141
Query: 118 Q--DCIKLLVGNKVDKV 132
Q D +LVGNK D V
Sbjct: 142 QTEDIPIILVGNKSDLV 158
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 14 FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWDT 68
++++LIG+ GVGKSTL + + D+ + +G D + + + G+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
G+ + L + ++VY +T R +F +++ I L Q D +LVG
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKV 132
NK D V
Sbjct: 122 NKSDLV 127
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
++K+LL+G GVGKS L F + G + + + + G++ L ++D Q+
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
R L ++VY VT + +F +++ + L Q D +LVGNK D
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 117
Query: 131 KV 132
V
Sbjct: 118 LV 119
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 14 FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK---LAIWDT 68
++++LIG+ GVGKSTL + + D+ + +G D + + + G+ L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
G+ + L + ++VY +T R +F +++ I L Q D +LVG
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKV 132
NK D V
Sbjct: 122 NKSDLV 127
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
++K+LL+G GVGKS L F + G + + + + G++ L ++D Q+
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
R L ++VY VT + +F +++ + L Q D +LVGNK D
Sbjct: 66 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 131 KV 132
V
Sbjct: 123 LV 124
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
++K+LL+G GVGKS L F + G + + + + G++ L ++D Q+
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
R L ++VY VT + +F +++ + L Q D +LVGNK D
Sbjct: 66 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 131 KV 132
V
Sbjct: 123 LV 124
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KLL +G GK+TLL +D L PT + +A+G +K +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP--TSEELAIG--NIKFTTFDLGGHIQA 80
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID-LYSTNQ--DCIKLLVGNKVD 130
R L Y+ GI+ + D + F D E+D L++ + D +++GNK+D
Sbjct: 81 RRLWKDYFPEVNGIVFLVDAADPERF----DEARVELDALFNIAELKDVPFVILGNKID 135
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KLL +G GK+TLL +D L PT + +A+G +K +D G +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP--TSEELAIG--NIKFTTFDLGGHIQA 58
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID-LYSTNQ--DCIKLLVGNKVD 130
R L Y+ GI+ + D + F D E+D L++ + D +++GNK+D
Sbjct: 59 RRLWKDYFPEVNGIVFLVDAADPERF----DEARVELDALFNIAELKDVPFVILGNKID 113
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWD 67
D +FK++L+G+SGVGKSTL +F D E+ + D + + + +++ L ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENS--EDTYERRIMVDKEEVTLIVYD 67
Query: 68 TAGQERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
Q L + ++V+ VT R +F+ + + + + + D +LVG
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVG 126
Query: 127 NKVD 130
NK D
Sbjct: 127 NKSD 130
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 13 LFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
+FK++L+G+SGVGKSTL +F D E+ + D + + + +++ L ++D
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--EDTYERRIMVDKEEVTLIVYDIW 59
Query: 70 GQERFRT-LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
Q L + ++V+ VT R +F+ + + + + + D +LVGNK
Sbjct: 60 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNK 118
Query: 129 VD 130
D
Sbjct: 119 SD 120
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKM 61
+ F L+++G+SG+GKSTL+ S F +D + E++ T+ ++ + G K+
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 62 KLAIWDTAG 70
+L + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKM 61
+ F L+++G+SG+GKSTL+ S F +D + E++ T+ ++ + G K+
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 62 KLAIWDTAG 70
+L + DT G
Sbjct: 64 RLTVVDTPG 72
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSD--TFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
KLLL+G SG GKS++ S+ F+ +D + H+ G M L +WD GQ+
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQD 66
Query: 73 -----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI 111
F ++ Q +I V+DV + ++ +I+AK +
Sbjct: 67 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI-EIFAKAL 109
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKM 61
+ F L ++G+SG+GKSTL+ S F +D + E++ T+ ++ + G K+
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 62 KLAIWDTAG 70
+L + DT G
Sbjct: 77 RLTVVDTPG 85
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKM 61
+ F L ++G+SG+GKSTL+ S F +D + E++ T+ ++ + G K+
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 62 KLAIWDTAG 70
+L + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 14 FKLLLIGDSGVGKSTLLLS-FTS---------DTFEELSPTIGVDFKIKHV-ALGGKKMK 62
F ++++G SG+GKSTL+ + F S + E++ T+ + I HV GG KMK
Sbjct: 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIK-AIGHVIEEGGVKMK 61
Query: 63 LAIWDTAG 70
L + DT G
Sbjct: 62 LTVIDTPG 69
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 34.7 bits (78), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTFEELSPTIGVDFKIKH----------VALGGKK 60
+ F L+++G+SG+GKSTL+ S F +D + P G +IK + GG +
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP--GPSHRIKKTVQVEQSKVLIKEGGVQ 87
Query: 61 MKLAIWDTAG 70
+ L I DT G
Sbjct: 88 LLLTIVDTPG 97
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTFEELSP--------TIGVDFKIKHVALGGKKMK 62
+ F L+++G+SG+GKSTL+ S F +D + P T+ V+ + GG ++
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 61
Query: 63 LAIWDTAG 70
L I DT G
Sbjct: 62 LTIVDTPG 69
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTFEELSPTIGVDFKIKH----------VALGGKK 60
+ F L+++G+SG+GKSTL+ S F +D + P G +IK + GG +
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP--GPSHRIKKTVQVEQSKVLIKEGGVQ 64
Query: 61 MKLAIWDTAG 70
+ L I DT G
Sbjct: 65 LLLTIVDTPG 74
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KL+ +G GK+TLL D + PT+ + +A M +D G E+
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA----GMTFTTFDLGGHEQA 92
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
R + +Y GI+ + D + + + T + L++GNK+D+
Sbjct: 93 RRVWKNYLPAINGIVFLVDCADHSRLVE-SKVELNALMTDETISNVPILILGNKIDR 148
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 33.5 bits (75), Expect = 0.052, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVA-LGG-------KKMKLAI 65
K+ LIGD GK++LL +TF+ + S T G++ K + G K+
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
WD GQE + ++ + M+ +R D+ + W + I+ Y I +V
Sbjct: 103 WDFGGQEIMHA-SHQFFMTRSSVYMLLLDSRTDSNKHY---WLRHIEKYGGKSPVI--VV 156
Query: 126 GNKVDK 131
NK+D+
Sbjct: 157 MNKIDE 162
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KL+ +G GK+TLL D + PT+ + +A M +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA----GMTFTTFDLGGHIQA 82
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ---DCIKLLVGNKVDK 131
R + +Y GI+ + D + + E+D T++ + L++GNK+D+
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKE----ELDSLMTDETIANVPILILGNKIDR 138
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KL+ +G GK+TLL D + PT+ + +A M +D G +
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA----GMTFTTFDLGGHIQA 79
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ---DCIKLLVGNKVDK 131
R + +Y GI+ + D + +E+D T++ + L++GNK+D+
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLE----SKEELDSLMTDETIANVPILILGNKIDR 135
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KL+ +G GK+TLL D + PT+ + +A M +D G +
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA----GMTFTTFDLGGGIQA 73
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ---DCIKLLVGNKVDK 131
R + +Y GI+ + D + +E+D T++ + L++GNK+D+
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLE----SKEELDSLMTDETIANVPILILGNKIDR 129
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR------RDTFTNLADI-WAKEIDLY 114
K+AI+ GQ TL + G + ++V D +R R + D+ A ++D
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 115 STNQDCIKLLVGNKVD 130
QD + +L+G + D
Sbjct: 65 VAGQDAVIVLLGTRND 80
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-----ELSPTIGVDFKIKHVALGGKKMKLAIW 66
+ F +L +G++G+GKSTL+ + + FE P + + + ++KL I
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100
Query: 67 DTAG 70
T G
Sbjct: 101 STVG 104
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 9 EFDYLFKLLLI--GDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIW 66
+F + K +I GD G T +S +TF + +FK+KH +G M A
Sbjct: 64 KFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDE------NFKLKHYGIGWVSMANAGP 117
Query: 67 DTAGQERFRTLT 78
DT G + F TLT
Sbjct: 118 DTNGSQFFITLT 129
>pdb|3PMQ|A Chain A, Crystal Structure Of The Outer Membrane Decaheme
Cytochrome Mtrf
Length = 669
Score = 28.1 bits (61), Expect = 1.9, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 20/104 (19%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
+LL G +G G S+ FTS+T P VD K H + RF
Sbjct: 88 QLLPQGATGAGNSSEWQHFTSETCAASCPGTFVDHKNGHYSY----------------RF 131
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118
S+ + G G+ + D T+R D A L TNQ
Sbjct: 132 ----SATFNGMNGVTFLSDATQRLVIKIGGDALADGTVLPITNQ 171
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 98
K + +WD GQ R Y+ +I V D T RD
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD 103
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 9/117 (7%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+L ++GD+ GKS+L+ F + +++ L T +K K + + G+ + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAG--- 63
Query: 74 FRTLTSSYYRG-AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNK 128
+ + G A +I V+ + ++F ++ + + L + + L LVG +
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 117
>pdb|1KQW|A Chain A, Crystal Structure Of Holo-Crbp From Zebrafish
pdb|1KQX|A Chain A, Crystal Structure Of Apo-Crbp From Zebrafish
Length = 134
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 33 FTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
++D FE++ + +DF + +A+ K+ K+ + ++F T T S +R
Sbjct: 11 LSNDNFEDVMKALDIDFATRKIAVHLKQTKVIV---QNGDKFETKTLSTFRN 59
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+L ++GD+ GKS+L+ F + +++ L T +K K + + G+ + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAG--- 63
Query: 74 FRTLTSSYYRG-AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132
+ + G A +I V+ + ++F ++ + + L + + L + D++
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 133 C 133
Sbjct: 121 S 121
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++++ G GK+T++ T V + ++ G ++ ++D G ++
Sbjct: 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKG--RVAFTVFDMGGAKK 75
Query: 74 FRTLTSSYYRGAQGIIMVYD 93
FR L +YY +I V D
Sbjct: 76 FRGLWETYYDNIDAVIFVVD 95
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By Computational
Design And Directed Evolution
Length = 353
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KLLVGNKVDKVCPWRLFLSGFW 143
+LL N +VCPW +L+G W
Sbjct: 252 RLLKENMHFEVCPWSSYLTGAW 273
>pdb|1FKW|A Chain A, Murine Adenosine Deaminase (D295e)
Length = 349
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KLLVGNKVDKVCPWRLFLSGFW 143
+LL N +VCPW +L+G W
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAW 269
>pdb|3KM8|A Chain A, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
pdb|3KM8|B Chain B, Crystal Structuore Of Adenosine Deaminase From Mus
Musculus Complexed With 9-Deazainosine
Length = 352
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KLLVGNKVDKVCPWRLFLSGFW 143
+LL N +VCPW +L+G W
Sbjct: 251 RLLKENMHFEVCPWSSYLTGAW 272
>pdb|2ADA|A Chain A, Atomic Structure Of Adenosine Deaminase Complexed With A
Transition-State Analog: Understanding Catalysis And
Immunodeficiency Mutations
Length = 352
Score = 26.6 bits (57), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KLLVGNKVDKVCPWRLFLSGFW 143
+LL N +VCPW +L+G W
Sbjct: 251 RLLKENMHFEVCPWSSYLTGAW 272
>pdb|1FKX|A Chain A, Murine Adenosine Deaminase (D296a)
Length = 349
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KLLVGNKVDKVCPWRLFLSGFW 143
+LL N +VCPW +L+G W
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAW 269
>pdb|1A4L|A Chain A, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|B Chain B, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|C Chain C, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4L|D Chain D, Ada Structure Complexed With Deoxycoformycin At Ph 7.0
pdb|1A4M|A Chain A, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|B Chain B, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|C Chain C, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1A4M|D Chain D, Ada Structure Complexed With Purine Riboside At Ph 7.0
pdb|1ADD|A Chain A, A Pre-Transition State Mimic Of An Enzyme: X-Ray Structure
Of Adenosine Deaminase With Bound 1-Deaza-Adenosine And
Zinc-Activated Water
pdb|3MVT|A Chain A, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVT|C Chain C, Crystal Structure Of Apo Mada At 2.2a Resolution
pdb|3MVI|A Chain A, Crystal Structure Of Holo Mada At 1.6 A Resolution
pdb|3MVI|B Chain B, Crystal Structure Of Holo Mada At 1.6 A Resolution
Length = 349
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KLLVGNKVDKVCPWRLFLSGFW 143
+LL N +VCPW +L+G W
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAW 269
>pdb|1UIO|A Chain A, Adenosine Deaminase (His 238 Ala Mutant)
Length = 349
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KLLVGNKVDKVCPWRLFLSGFW 143
+LL N +VCPW +L+G W
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAW 269
>pdb|1UIP|A Chain A, Adenosine Deaminase (His 238 Glu Mutant)
Length = 349
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 122 KLLVGNKVDKVCPWRLFLSGFW 143
+LL N +VCPW +L+G W
Sbjct: 248 RLLKENMHFEVCPWSSYLTGAW 269
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 1 MASSTSQQEF-DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK 59
M S+ Q F Y + G V + + +T E + + K++A GGK
Sbjct: 174 MKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 60 KMKLAIWD 67
KL IWD
Sbjct: 234 DKKLLIWD 241
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 11 DYL--FKLLLIGDSGVGKSTLLLSFTSDTF 38
DYL F +L G SGVGKS++L T +
Sbjct: 161 DYLEGFICILAGPSGVGKSSILSRLTGEEL 190
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 48 DFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89
+FK+KH +G M A DT G + F TLT + + ++
Sbjct: 91 NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVV 132
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 11 DYLFKLLLIGDSGVGKST---LLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWD 67
D K L++G+ G GKST LL + E+ GVD + + GG ++ W+
Sbjct: 2 DKELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAED--GVD-ALNKLQAGGYGFVISDWN 58
Query: 68 TA---GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA 108
G E +T+ + A ++MV +++ A A
Sbjct: 59 MPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGA 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,378,705
Number of Sequences: 62578
Number of extensions: 171458
Number of successful extensions: 1414
Number of sequences better than 100.0: 378
Number of HSP's better than 100.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 379
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.7 bits)