BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031704
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23657|RABC1_ARATH Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=2
SV=1
Length = 212
Score = 239 bits (609), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 113/131 (86%), Positives = 126/131 (96%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
M SS+ Q EFDYLFK+LLIGDSGVGKS+LLLSFTS+TF++LSPTIGVDFK+K++ +G KK
Sbjct: 1 MGSSSGQPEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEKK 60
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL+DIWAKEIDLYSTNQDC
Sbjct: 61 LKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDC 120
Query: 121 IKLLVGNKVDK 131
IK+LVGNKVDK
Sbjct: 121 IKMLVGNKVDK 131
>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1
SV=1
Length = 210
Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 96/131 (73%), Positives = 117/131 (89%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
M SS+ Q +D FK+LLIGDSGVGKS+LL+SF S + E+L+PTIGVDFKIK + +GGK+
Sbjct: 1 MGSSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKR 60
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+KL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TFTNL D+W KEI+LYSTNQ+C
Sbjct: 61 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQEC 120
Query: 121 IKLLVGNKVDK 131
+++LVGNKVD+
Sbjct: 121 VRMLVGNKVDR 131
>sp|Q9SF92|RAC2B_ARATH Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2
SV=1
Length = 205
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/131 (73%), Positives = 116/131 (88%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
M SS+ Q +D FK+LLIGDSGVGKS+LLLSF S + E+L+PTIGVDFKIK + + GK+
Sbjct: 1 MGSSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGKR 60
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+KL IWDTAGQE+FRTLTSSY+RG+QGII+VYDVT+R+TF NLADIWAKEI+LYSTN DC
Sbjct: 61 LKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHDC 120
Query: 121 IKLLVGNKVDK 131
IK+LVGNKVD+
Sbjct: 121 IKMLVGNKVDR 131
>sp|P36862|YPTV3_VOLCA GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1
Length = 203
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/121 (67%), Positives = 96/121 (79%), Gaps = 1/121 (0%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
DY FK+LL+GDSGVGKS +L FTS FEE + TIGVDFK+K++ GK+ KL IWDTA
Sbjct: 7 DYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTA 66
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFRTLTSSYYRGAQGII VYDVTRRDTF +L W +E D+YST + IK++V NKV
Sbjct: 67 GQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKV 126
Query: 130 D 130
D
Sbjct: 127 D 127
>sp|Q5ZLG1|RAB18_CHICK Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1
Length = 206
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 98/119 (82%), Gaps = 2/119 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
RFRTLT SYYRGAQG+I+VYDVTRRDTF L D W E++ Y T D +K+LVGNK+DK
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVKMLVGNKIDK 126
>sp|Q6DHC1|RB18B_DANRE Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1
Length = 205
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 99/119 (83%), Gaps = 2/119 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +A+ G + KLAIWDTAGQE
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
RFRTLT SYYRGAQG+I+VYDVT+RDTFT L + W E++ Y T D +K+LVGNK+DK
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDK 126
>sp|Q0IIG8|RAB18_BOVIN Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1
Length = 206
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
RFRTLT SYYRGAQG+I+VYDVTRRDTF L D W E++ Y T D + +LVGNK+DK
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126
>sp|Q5R5H5|RAB18_PONAB Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1
Length = 206
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
RFRTLT SYYRGAQG+I+VYDVTRRDTF L D W E++ Y T D + +LVGNK+DK
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126
>sp|Q9NP72|RAB18_HUMAN Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1
Length = 206
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
RFRTLT SYYRGAQG+I+VYDVTRRDTF L D W E++ Y T D + +LVGNK+DK
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126
>sp|Q5EB77|RAB18_RAT Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1
Length = 206
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
RFRTLT SYYRGAQG+I+VYDVTRRDTF L D W E++ Y T D + +LVGNK+DK
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126
>sp|P35293|RAB18_MOUSE Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2
Length = 206
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 97/119 (81%), Gaps = 2/119 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
RFRTLT SYYRGAQG+I+VYDVTRRDTF L D W E++ Y T D + +LVGNK+DK
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDK 126
>sp|Q6NYB7|RAB1A_RAT Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3
Length = 205
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 61
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 119
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 120 LLVGNKCD 127
>sp|P62821|RAB1A_MOUSE Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3
Length = 205
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 61
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 119
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 120 LLVGNKCD 127
>sp|P62820|RAB1A_HUMAN Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3
Length = 205
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 61
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 119
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 120 LLVGNKCD 127
>sp|P62822|RAB1A_CANFA Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3
Length = 205
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 61
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 119
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 120 LLVGNKCD 127
>sp|Q05974|RAB1A_LYMST Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1
Length = 205
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 99/128 (77%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
ST ++DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 2 STMNPDYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 61
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 119
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 120 LLVGNKSD 127
>sp|Q4R8X3|RAB1B_MACFA Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2
SV=1
Length = 201
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/125 (64%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Query: 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL I
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
WDTAGQERFRT+TSSYYRGA GII+VYDVT R+++ N+ W +EID Y++ ++ KLLV
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQ-WLQEIDRYAS-ENVNKLLV 119
Query: 126 GNKVD 130
GNK D
Sbjct: 120 GNKSD 124
>sp|Q39571|YPTC1_CHLRE GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1
PE=3 SV=1
Length = 203
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 96/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ V L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|P22125|RAB1_DIPOM Ras-related protein ORAB-1 OS=Diplobatis ommata PE=2 SV=1
Length = 202
Score = 156 bits (395), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>sp|Q52NJ2|RAB1A_PIG Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3
Length = 205
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 98/128 (76%), Gaps = 3/128 (2%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 2 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 61
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT + +F N+ W +EID Y++ ++ K
Sbjct: 62 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQ-WLQEIDRYAS-ENVNK 119
Query: 123 LLVGNKVD 130
LLVGNK D
Sbjct: 120 LLVGNKCD 127
>sp|P31584|YPTV1_VOLCA GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1
Length = 203
Score = 156 bits (394), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 96/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ V L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLAEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|P11620|YPT1_SCHPO GTP-binding protein ypt1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt1 PE=1 SV=2
Length = 203
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/125 (65%), Positives = 95/125 (76%), Gaps = 3/125 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +D+F N+ W +EID Y+ + +LLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQ-WLQEIDRYAV-EGVNRLLVGN 121
Query: 128 KVDKV 132
K D V
Sbjct: 122 KSDMV 126
>sp|Q01890|YPT1_PHYIN Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1
PE=3 SV=1
Length = 201
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W EID Y+ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLHEIDRYAC-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|Q9D1G1|RAB1B_MOUSE Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1
Length = 201
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Query: 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL I
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
WDTAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLV
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLV 119
Query: 126 GNKVD 130
GNK D
Sbjct: 120 GNKSD 124
>sp|Q2HJH2|RAB1B_BOVIN Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1
Length = 201
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|Q5RE13|RAB1B_PONAB Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1
Length = 201
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Query: 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL I
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
WDTAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLV
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLV 119
Query: 126 GNKVD 130
GNK D
Sbjct: 120 GNKSD 124
>sp|Q9H0U4|RAB1B_HUMAN Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1
Length = 201
Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 97/125 (77%), Gaps = 3/125 (2%)
Query: 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL I
Sbjct: 2 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 61
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
WDTAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLV
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLV 119
Query: 126 GNKVD 130
GNK D
Sbjct: 120 GNKSD 124
>sp|P10536|RAB1B_RAT Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1
Length = 201
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 97/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|P33723|YPT1_NEUCR GTP-binding protein ypt1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ypt-1
PE=3 SV=1
Length = 203
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/123 (66%), Positives = 94/123 (76%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GI +VYDVT D+F N+ W +EID Y+T + KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQ-WLQEIDRYAT-EGVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|P40392|RIC1_ORYSJ Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1
PE=2 SV=2
Length = 202
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F D++ E TIGVDFKI+ V GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLNEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/123 (65%), Positives = 98/123 (79%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIG+SGVGKS LLL F+ DT+ + TIGVDFKIK V L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N +W +EID Y+T+ +KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>sp|P28188|RAD2A_ARATH Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1
SV=3
Length = 203
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/123 (65%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F+ D++ E TIGVDFKI+ V GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT ++F N+ W EID Y+++ + KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQ-WLSEIDRYASD-NVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1
Length = 203
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 95/123 (77%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F D++ + TIGVDFKI+ V GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W EID Y+++ + KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASD-NVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|Q4UB16|RAB1_THEAN Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1
Length = 220
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/126 (58%), Positives = 97/126 (76%), Gaps = 2/126 (1%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIW 66
+E+DYLFK+++IGDSG GKS+LLL F +T+ E TIGVDFKIK V + +KL IW
Sbjct: 2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIW 61
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAGQERFRT+TS+YYRGA GII VYDVT + +F ++ + W ++ID Y+T+ C KLL+G
Sbjct: 62 DTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVC-KLLIG 120
Query: 127 NKVDKV 132
NK+D V
Sbjct: 121 NKIDLV 126
>sp|Q9TVU5|RAB1_THEPA Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1
Length = 220
Score = 152 bits (384), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 96/124 (77%), Gaps = 2/124 (1%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIW 66
+E+DYLFK+++IGDSG GKS+LLL F +T+ E TIGVDFKIK V + +KL IW
Sbjct: 2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIW 61
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAGQERFRT+TS+YYRGA GII VYDVT + +F ++ + W ++ID Y+T+ C KLL+G
Sbjct: 62 DTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVC-KLLIG 120
Query: 127 NKVD 130
NK+D
Sbjct: 121 NKID 124
>sp|Q06AU7|RAB1B_PIG Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1
Length = 201
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 96/123 (78%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQER RT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KSD 124
>sp|P34139|RAB1A_DICDI Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A
PE=2 SV=2
Length = 202
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 95/125 (76%), Gaps = 3/125 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWD 67
++ YLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 DYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT + TF N+ W +EID ++ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQ-WLQEIDRFAC-ENVNKLLVGN 121
Query: 128 KVDKV 132
K D V
Sbjct: 122 KSDLV 126
>sp|Q54NU2|RAB1D_DICDI Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D
PE=1 SV=1
Length = 204
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 80/125 (64%), Positives = 95/125 (76%), Gaps = 3/125 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWD 67
E D+ FK+LLIGDSGVGKS LLL F D++ + TIGVDFKIK + L GK +KL IWD
Sbjct: 6 EHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWD 65
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGAQGII+VYD T +D+FTN+ W EID Y+ ++ KLLVGN
Sbjct: 66 TAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQ-WMGEIDRYAC-ENVNKLLVGN 123
Query: 128 KVDKV 132
K D V
Sbjct: 124 KTDLV 128
>sp|Q05976|RB18A_LYMST Ras-related protein Rab-18A OS=Lymnaea stagnalis GN=RAB18A PE=2
SV=1
Length = 202
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 98/128 (76%), Gaps = 2/128 (1%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLA 64
+QE K+L+IG+SGVGKS+LLL FT DTF+ E + TIGVDFK+K + + G K KLA
Sbjct: 2 EEQEIITTLKILIIGESGVGKSSLLLRFTEDTFDPEQAATIGVDFKVKTLTVEGNKTKLA 61
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
IWDTAGQERFRTLT SYYRGAQG+I+VYDV+ + +F L D W E++ +ST D +K+L
Sbjct: 62 IWDTAGQERFRTLTPSYYRGAQGVILVYDVSSKQSFNKL-DAWLNELETFSTKHDMVKML 120
Query: 125 VGNKVDKV 132
VGNK+D+
Sbjct: 121 VGNKIDRA 128
>sp|Q9SEH3|RAD2C_ARATH Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=1
SV=1
Length = 202
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F D++ + TIGVDFKI+ V GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+ YDVT ++F N+ W EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQ-WLNEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 91/123 (73%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
EFDYLFKLLLIGDS VGKS LL F D++ + TIGVDFKI+ V + GK +KL IWD
Sbjct: 4 EFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYD+T ++F N+ W EID Y+ N KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQ-WLDEIDRYA-NDSVRKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 79/123 (64%), Positives = 92/123 (74%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +F N+ W +EI Y+ + +LLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQ-WMQEIQRYACDS-VTRLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KCD 124
>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2
SV=1
Length = 202
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 3/123 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F D++ + TIGVDFKI+ V GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+ YDVT ++F N+ W EID Y++ ++ KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQ-WLNEIDRYAS-ENVNKLLVGN 121
Query: 128 KVD 130
K D
Sbjct: 122 KND 124
>sp|Q8MXS1|RAB18_CAEEL Ras-related protein Rab-18 OS=Caenorhabditis elegans GN=rab-18 PE=3
SV=1
Length = 203
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 92/118 (77%), Gaps = 2/118 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+L+L F D F+ E + TIGVDF++ +A+ G ++KLAIWDTAGQE
Sbjct: 12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQE 71
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFRTLT SYYRGAQG+I VYDVT R +F L + W +E+D Y TN + IK++V NK+D
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKL-NHWMQEVDTYCTNDNIIKMMVANKID 128
>sp|Q9ZRE2|RABD1_ARATH Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1
SV=1
Length = 205
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 91/126 (72%), Gaps = 3/126 (2%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
E+DYLFKLLLIGDS VGKS LLL F D + + TIGVDFKI+ + GK +KL IW
Sbjct: 3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIW 62
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAGQERFRT+TSSYYRGA GII+VYD T ++F N+ W EID Y+ N+ KLL+G
Sbjct: 63 DTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQ-WLSEIDRYA-NESVCKLLIG 120
Query: 127 NKVDKV 132
NK D V
Sbjct: 121 NKNDMV 126
>sp|P90726|RAB18_CAEBR Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18
PE=3 SV=1
Length = 202
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 89/118 (75%), Gaps = 2/118 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+L+L F D F+ E + TIGVDF++ + + G ++KLAIWDTAGQE
Sbjct: 12 LKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQE 71
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RFRTLT SYYRGAQG+I VYDVT R +F L W E+D Y TN + IK++V NK+D
Sbjct: 72 RFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKH-WMTEVDTYCTNDNVIKMMVANKID 128
>sp|Q54GY8|RAB18_DICDI Ras-related protein Rab-18 OS=Dictyostelium discoideum GN=rab18
PE=3 SV=1
Length = 202
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 95/124 (76%), Gaps = 2/124 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWD 67
E D +K+LLIGDS VGK++++ F+ DTF+E L TIGV+FK+K V + GKK+ L IWD
Sbjct: 2 EEDKQYKVLLIGDSDVGKTSIVKRFSDDTFDEDLLCTIGVEFKMKEVKVDGKKVDLCIWD 61
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQE+FR L SSYYRGA GII+ YDVT+R++F NL + W E++ ++ + +KLLVGN
Sbjct: 62 TAGQEKFRALISSYYRGAHGIILTYDVTKRESFDNL-NYWLNEVENFANRSNLVKLLVGN 120
Query: 128 KVDK 131
K+DK
Sbjct: 121 KIDK 124
>sp|P36861|YPTV2_VOLCA GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1
Length = 217
Score = 144 bits (362), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 74/131 (56%), Positives = 97/131 (74%), Gaps = 3/131 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA + ++D L KLLL+GDSGVGKS LLL FT D F TIG+DFKIK V + GK
Sbjct: 1 MARIPGRPDYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGK 60
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
+KL IWDTAGQERFRT+TS+YYRGAQGII+VYD+T +F N+ + W + I+ ++++ +
Sbjct: 61 LVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRN-WMRNIEQHASD-N 118
Query: 120 CIKLLVGNKVD 130
K+LVGNK+D
Sbjct: 119 VNKILVGNKLD 129
>sp|P20790|RAB8A_DICDI Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A
PE=3 SV=1
Length = 208
Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/122 (57%), Positives = 93/122 (76%), Gaps = 3/122 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
+DYL KLLLIGDSGVGKS LLL F+ D+F TIG+DFKI+ + L GK++KL IWDT
Sbjct: 12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDT 71
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQERFRT+T++YYRGA GI++VYDVT +F N+ + W + I+ ++T+ K+L+GNK
Sbjct: 72 AGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRN-WIRNIEQHATDS-VNKMLIGNK 129
Query: 129 VD 130
D
Sbjct: 130 CD 131
>sp|Q5U316|RAB35_RAT Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1
Length = 201
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 96/133 (72%), Gaps = 12/133 (9%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIW 66
+++D+LFKLL+IGDSGVGKS+LLL F +TF TIGVDFKI+ V + G+K+KL IW
Sbjct: 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 62
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC---IKL 123
DTAGQERFRT+TS+YYRG G+I+VYDVT ++F N+ W EI NQ+C ++
Sbjct: 63 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRI 116
Query: 124 LVGNKVDKVCPWR 136
LVGNK D P R
Sbjct: 117 LVGNKNDD--PER 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,205,069
Number of Sequences: 539616
Number of extensions: 2089398
Number of successful extensions: 15063
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 13084
Number of HSP's gapped (non-prelim): 1344
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)