Query 031704
Match_columns 154
No_of_seqs 122 out of 1419
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 04:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.4E-35 9.5E-40 194.5 13.9 140 7-148 3-143 (205)
2 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.8E-32 8.2E-37 180.3 13.7 133 10-143 19-152 (221)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 7.5E-32 1.6E-36 178.5 13.5 132 12-145 4-136 (200)
4 KOG0080 GTPase Rab18, small G 100.0 1.5E-31 3.2E-36 172.4 12.7 137 8-145 6-143 (209)
5 KOG0098 GTPase Rab2, small G p 100.0 5.8E-31 1.3E-35 173.4 12.8 134 10-145 3-137 (216)
6 KOG0078 GTP-binding protein SE 100.0 1.6E-30 3.5E-35 174.9 14.3 135 8-144 7-142 (207)
7 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.1E-30 2.5E-35 175.2 13.3 139 5-145 6-145 (222)
8 cd04120 Rab12 Rab12 subfamily. 100.0 7.1E-30 1.5E-34 176.2 15.1 126 15-142 2-128 (202)
9 cd04121 Rab40 Rab40 subfamily. 100.0 1.6E-29 3.4E-34 172.9 15.8 132 10-144 3-135 (189)
10 KOG0086 GTPase Rab4, small G p 100.0 2.4E-30 5.1E-35 165.8 10.1 138 7-146 3-141 (214)
11 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1E-28 2.2E-33 173.2 16.5 130 1-133 1-131 (232)
12 KOG0095 GTPase Rab30, small G 100.0 2.6E-29 5.7E-34 160.4 12.0 129 9-139 3-132 (213)
13 cd04122 Rab14 Rab14 subfamily. 100.0 8E-29 1.7E-33 166.2 15.1 128 13-142 2-130 (166)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.1E-28 2.4E-33 167.9 15.5 120 11-133 3-123 (182)
15 cd04133 Rop_like Rop subfamily 100.0 2E-28 4.3E-33 165.8 16.1 119 14-135 2-121 (176)
16 cd04131 Rnd Rnd subfamily. Th 100.0 1.6E-28 3.5E-33 166.6 15.4 118 13-133 1-119 (178)
17 cd01867 Rab8_Rab10_Rab13_like 100.0 1.8E-28 3.8E-33 164.7 15.0 128 12-141 2-130 (167)
18 KOG0093 GTPase Rab3, small G p 100.0 7.6E-29 1.6E-33 157.8 12.1 134 7-142 15-149 (193)
19 KOG0394 Ras-related GTPase [Ge 100.0 7.3E-29 1.6E-33 163.2 11.6 132 10-142 6-143 (210)
20 cd01864 Rab19 Rab19 subfamily. 100.0 3.6E-28 7.8E-33 162.8 15.0 124 12-137 2-126 (165)
21 cd04127 Rab27A Rab27a subfamil 100.0 3.1E-28 6.6E-33 165.2 14.8 131 11-142 2-143 (180)
22 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.1E-28 6.8E-33 168.1 15.1 128 14-142 1-133 (201)
23 cd01868 Rab11_like Rab11-like. 100.0 3.6E-28 7.8E-33 162.7 15.0 129 12-142 2-131 (165)
24 cd04136 Rap_like Rap-like subf 100.0 3.7E-28 8.1E-33 162.1 14.9 124 14-139 2-126 (163)
25 cd01865 Rab3 Rab3 subfamily. 100.0 5.3E-28 1.1E-32 162.1 15.4 122 14-137 2-124 (165)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 4.4E-28 9.6E-33 163.6 14.6 130 13-144 2-132 (172)
27 cd04117 Rab15 Rab15 subfamily. 100.0 6.1E-28 1.3E-32 161.3 15.0 124 14-139 1-125 (161)
28 PLN03071 GTP-binding nuclear p 100.0 6.8E-28 1.5E-32 168.5 15.6 130 1-133 1-131 (219)
29 cd01866 Rab2 Rab2 subfamily. 100.0 8.8E-28 1.9E-32 161.5 15.4 129 11-141 2-131 (168)
30 cd04115 Rab33B_Rab33A Rab33B/R 100.0 7.3E-28 1.6E-32 162.2 14.9 127 13-140 2-130 (170)
31 cd04176 Rap2 Rap2 subgroup. T 100.0 7.1E-28 1.5E-32 161.0 14.7 123 14-138 2-125 (163)
32 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 9.1E-28 2E-32 160.9 15.1 126 13-140 2-128 (166)
33 cd04102 RabL3 RabL3 (Rab-like3 100.0 4.9E-28 1.1E-32 166.8 14.0 123 14-137 1-147 (202)
34 cd04119 RJL RJL (RabJ-Like) su 100.0 7E-28 1.5E-32 161.2 14.4 125 14-139 1-130 (168)
35 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.1E-27 2.4E-32 162.1 15.5 118 14-134 2-120 (175)
36 PTZ00369 Ras-like protein; Pro 100.0 8.9E-28 1.9E-32 164.4 15.1 126 12-139 4-130 (189)
37 PLN03110 Rab GTPase; Provision 100.0 1.9E-27 4E-32 166.0 16.2 128 10-139 9-137 (216)
38 PLN03118 Rab family protein; P 100.0 2.2E-27 4.8E-32 165.0 16.5 135 7-141 8-142 (211)
39 cd04124 RabL2 RabL2 subfamily. 100.0 1.8E-27 3.9E-32 159.0 15.4 117 14-133 1-118 (161)
40 cd01875 RhoG RhoG subfamily. 100.0 1.6E-27 3.4E-32 163.4 15.2 119 13-134 3-122 (191)
41 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.6E-27 3.6E-32 160.6 14.5 121 15-136 2-123 (170)
42 cd04110 Rab35 Rab35 subfamily. 100.0 2.9E-27 6.3E-32 163.1 15.9 128 11-141 4-132 (199)
43 cd04116 Rab9 Rab9 subfamily. 100.0 3.8E-27 8.3E-32 158.5 16.0 121 11-132 3-127 (170)
44 cd04113 Rab4 Rab4 subfamily. 100.0 2.3E-27 5.1E-32 158.1 14.4 124 14-139 1-125 (161)
45 cd04112 Rab26 Rab26 subfamily. 100.0 2.2E-27 4.7E-32 162.7 14.5 124 14-139 1-126 (191)
46 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.1E-27 6.7E-32 157.8 14.8 128 13-142 2-130 (164)
47 cd04175 Rap1 Rap1 subgroup. T 100.0 2.3E-27 5E-32 158.7 14.1 124 14-139 2-126 (164)
48 PF00071 Ras: Ras family; Int 100.0 2E-27 4.4E-32 158.5 13.8 128 15-144 1-129 (162)
49 KOG0079 GTP-binding protein H- 100.0 2.5E-28 5.3E-33 155.6 8.8 132 11-145 6-138 (198)
50 cd04109 Rab28 Rab28 subfamily. 100.0 2.5E-27 5.3E-32 165.3 14.7 125 14-139 1-129 (215)
51 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.4E-27 5.3E-32 165.5 14.5 119 13-134 1-120 (222)
52 cd04111 Rab39 Rab39 subfamily. 100.0 3.2E-27 6.8E-32 164.3 14.9 126 13-139 2-129 (211)
53 cd00877 Ran Ran (Ras-related n 100.0 5.9E-27 1.3E-31 157.3 15.4 117 14-133 1-118 (166)
54 cd04125 RabA_like RabA-like su 100.0 5.2E-27 1.1E-31 160.4 15.2 124 14-139 1-125 (188)
55 smart00173 RAS Ras subfamily o 100.0 3.9E-27 8.5E-32 157.4 13.8 124 14-139 1-125 (164)
56 cd04106 Rab23_lke Rab23-like s 100.0 6.2E-27 1.3E-31 156.1 14.0 125 14-141 1-128 (162)
57 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.2E-26 2.5E-31 154.5 15.3 118 14-133 2-120 (162)
58 cd04128 Spg1 Spg1p. Spg1p (se 99.9 7.5E-27 1.6E-31 159.0 14.0 116 14-132 1-117 (182)
59 cd04143 Rhes_like Rhes_like su 99.9 7.3E-27 1.6E-31 165.7 14.1 130 14-145 1-139 (247)
60 cd01871 Rac1_like Rac1-like su 99.9 2.2E-26 4.7E-31 155.6 15.7 117 14-133 2-119 (174)
61 cd04140 ARHI_like ARHI subfami 99.9 1.8E-26 4E-31 154.6 14.9 124 14-139 2-128 (165)
62 PLN00023 GTP-binding protein; 99.9 1.9E-26 4.1E-31 166.7 15.9 126 8-134 16-166 (334)
63 cd01861 Rab6 Rab6 subfamily. 99.9 1.8E-26 3.9E-31 153.7 14.6 123 14-138 1-124 (161)
64 cd04144 Ras2 Ras2 subfamily. 99.9 8.7E-27 1.9E-31 159.6 13.2 125 15-141 1-128 (190)
65 PLN03108 Rab family protein; P 99.9 2.5E-26 5.4E-31 159.7 15.5 130 11-142 4-134 (210)
66 cd04132 Rho4_like Rho4-like su 99.9 2E-26 4.4E-31 157.3 14.7 118 14-134 1-120 (187)
67 cd04142 RRP22 RRP22 subfamily. 99.9 2.1E-26 4.5E-31 158.7 14.9 128 14-142 1-139 (198)
68 cd04134 Rho3 Rho3 subfamily. 99.9 3.7E-26 8.1E-31 156.4 15.9 119 15-136 2-121 (189)
69 smart00174 RHO Rho (Ras homolo 99.9 3.1E-26 6.8E-31 154.5 15.2 116 16-134 1-117 (174)
70 cd01860 Rab5_related Rab5-rela 99.9 3.3E-26 7.1E-31 152.8 14.9 124 14-139 2-126 (163)
71 cd01863 Rab18 Rab18 subfamily. 99.9 4.2E-26 9.1E-31 152.0 15.2 118 14-132 1-119 (161)
72 cd04126 Rab20 Rab20 subfamily. 99.9 2.2E-26 4.8E-31 160.5 14.4 114 14-133 1-114 (220)
73 cd01892 Miro2 Miro2 subfamily. 99.9 3.5E-26 7.7E-31 153.9 14.8 122 11-136 2-125 (169)
74 smart00175 RAB Rab subfamily o 99.9 3.2E-26 6.9E-31 152.8 14.5 122 14-137 1-123 (164)
75 cd04130 Wrch_1 Wrch-1 subfamil 99.9 5.8E-26 1.3E-30 153.3 15.4 117 14-133 1-118 (173)
76 cd04101 RabL4 RabL4 (Rab-like4 99.9 3.5E-26 7.6E-31 152.8 14.1 123 14-139 1-127 (164)
77 cd04118 Rab24 Rab24 subfamily. 99.9 5.9E-26 1.3E-30 155.7 15.5 117 14-133 1-119 (193)
78 cd04135 Tc10 TC10 subfamily. 99.9 1.1E-25 2.5E-30 151.7 15.9 118 14-134 1-119 (174)
79 cd01862 Rab7 Rab7 subfamily. 99.9 7E-26 1.5E-30 152.3 14.7 122 14-136 1-126 (172)
80 cd04123 Rab21 Rab21 subfamily. 99.9 1E-25 2.2E-30 149.9 14.7 124 14-139 1-125 (162)
81 cd04114 Rab30 Rab30 subfamily. 99.9 1.8E-25 4E-30 150.0 15.9 126 11-138 5-131 (169)
82 cd04177 RSR1 RSR1 subgroup. R 99.9 1.6E-25 3.5E-30 150.4 15.0 124 14-139 2-126 (168)
83 KOG0088 GTPase Rab21, small G 99.9 1.1E-26 2.3E-31 149.8 8.3 142 1-144 1-143 (218)
84 cd04146 RERG_RasL11_like RERG/ 99.9 8.1E-26 1.8E-30 151.4 12.4 123 15-139 1-126 (165)
85 smart00176 RAN Ran (Ras-relate 99.9 1.3E-25 2.9E-30 154.7 13.5 112 19-133 1-113 (200)
86 cd04103 Centaurin_gamma Centau 99.9 2.6E-25 5.7E-30 148.2 14.0 122 14-142 1-124 (158)
87 cd04148 RGK RGK subfamily. Th 99.9 2.3E-25 5E-30 155.9 14.4 125 14-141 1-128 (221)
88 smart00177 ARF ARF-like small 99.9 1.4E-25 3E-30 151.8 12.0 119 11-134 11-129 (175)
89 cd04149 Arf6 Arf6 subfamily. 99.9 1.4E-25 3E-30 150.9 11.9 117 12-133 8-124 (168)
90 cd00157 Rho Rho (Ras homology) 99.9 9E-25 1.9E-29 146.8 15.1 119 14-135 1-120 (171)
91 cd00154 Rab Rab family. Rab G 99.9 7.2E-25 1.6E-29 144.9 14.3 127 14-142 1-128 (159)
92 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.2E-25 4.8E-30 148.7 11.8 116 14-134 1-116 (159)
93 KOG0395 Ras-related GTPase [Ge 99.9 2.9E-25 6.2E-30 152.2 11.9 132 12-145 2-134 (196)
94 cd04139 RalA_RalB RalA/RalB su 99.9 1E-24 2.2E-29 145.4 14.0 119 14-134 1-120 (164)
95 cd04147 Ras_dva Ras-dva subfam 99.9 9.2E-25 2E-29 150.5 14.1 117 15-133 1-118 (198)
96 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 5.6E-25 1.2E-29 149.9 12.9 120 13-133 3-123 (183)
97 cd01870 RhoA_like RhoA-like su 99.9 1.5E-24 3.3E-29 146.4 14.8 118 14-134 2-120 (175)
98 PLN00223 ADP-ribosylation fact 99.9 4.8E-25 1E-29 150.0 12.1 120 11-135 15-134 (181)
99 cd01893 Miro1 Miro1 subfamily. 99.9 9.4E-25 2E-29 146.5 13.2 120 14-136 1-120 (166)
100 KOG0091 GTPase Rab39, small G 99.9 8.9E-26 1.9E-30 146.2 7.6 136 10-146 5-143 (213)
101 cd04154 Arl2 Arl2 subfamily. 99.9 1E-24 2.2E-29 147.3 13.1 119 11-134 12-130 (173)
102 cd01873 RhoBTB RhoBTB subfamil 99.9 2.7E-24 5.9E-29 147.8 15.3 117 13-133 2-134 (195)
103 KOG0097 GTPase Rab14, small G 99.9 4E-25 8.7E-30 140.3 10.1 137 8-146 6-143 (215)
104 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 8.6E-25 1.9E-29 146.5 11.5 115 16-137 2-117 (164)
105 PTZ00133 ADP-ribosylation fact 99.9 1.2E-24 2.6E-29 148.1 12.3 118 12-134 16-133 (182)
106 cd04137 RheB Rheb (Ras Homolog 99.9 2.7E-24 5.9E-29 145.9 13.7 123 14-138 2-125 (180)
107 cd04158 ARD1 ARD1 subfamily. 99.9 2E-24 4.3E-29 145.3 12.3 115 15-134 1-115 (169)
108 PF08477 Miro: Miro-like prote 99.9 3.5E-24 7.6E-29 136.2 12.6 114 15-130 1-119 (119)
109 cd00876 Ras Ras family. The R 99.9 4.4E-24 9.6E-29 141.7 13.4 123 15-139 1-124 (160)
110 cd04161 Arl2l1_Arl13_like Arl2 99.9 3E-24 6.6E-29 144.2 11.9 116 15-135 1-116 (167)
111 KOG0081 GTPase Rab27, small G 99.9 2.6E-26 5.7E-31 148.1 1.4 134 9-143 5-148 (219)
112 PTZ00132 GTP-binding nuclear p 99.9 1.9E-23 4.2E-28 145.6 15.9 121 10-133 6-127 (215)
113 cd04151 Arl1 Arl1 subfamily. 99.9 4.9E-24 1.1E-28 141.9 11.5 115 15-134 1-115 (158)
114 cd04129 Rho2 Rho2 subfamily. 99.9 2.8E-23 6.1E-28 141.9 15.4 117 14-133 2-119 (187)
115 KOG0083 GTPase Rab26/Rab37, sm 99.9 6.8E-26 1.5E-30 142.4 1.7 125 17-143 1-127 (192)
116 KOG0393 Ras-related small GTPa 99.9 2.7E-24 5.9E-29 145.2 9.6 120 12-134 3-124 (198)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 9.6E-24 2.1E-28 140.5 12.0 115 15-133 1-115 (160)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.4E-23 2.9E-28 141.9 12.1 116 13-133 15-130 (174)
119 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.6E-23 3.5E-28 139.2 11.8 116 15-135 1-116 (158)
120 cd04157 Arl6 Arl6 subfamily. 99.9 3.1E-23 6.7E-28 138.1 11.6 115 15-134 1-119 (162)
121 smart00178 SAR Sar1p-like memb 99.9 4.2E-23 9.1E-28 140.7 12.0 118 11-133 15-132 (184)
122 PF00025 Arf: ADP-ribosylation 99.9 6.5E-23 1.4E-27 138.8 12.4 119 11-134 12-130 (175)
123 cd00879 Sar1 Sar1 subfamily. 99.9 1.3E-22 2.9E-27 138.7 12.6 117 12-133 18-134 (190)
124 TIGR00231 small_GTP small GTP- 99.9 6.2E-22 1.3E-26 130.4 14.2 121 14-135 2-124 (161)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.6E-22 3.5E-27 135.4 11.3 115 15-134 1-122 (167)
126 COG1100 GTPase SAR1 and relate 99.9 3.9E-22 8.4E-27 139.2 13.5 122 14-136 6-128 (219)
127 cd04159 Arl10_like Arl10-like 99.9 5.3E-22 1.1E-26 131.2 12.3 115 16-135 2-117 (159)
128 KOG0073 GTP-binding ADP-ribosy 99.9 5.1E-22 1.1E-26 128.7 11.3 120 8-132 11-130 (185)
129 KOG4252 GTP-binding protein [S 99.9 4.4E-24 9.6E-29 140.4 1.2 133 7-142 14-147 (246)
130 cd01890 LepA LepA subfamily. 99.9 1.4E-21 3.1E-26 132.3 11.2 114 15-134 2-134 (179)
131 cd04155 Arl3 Arl3 subfamily. 99.9 1.5E-21 3.2E-26 131.5 11.1 120 11-135 12-131 (173)
132 cd04105 SR_beta Signal recogni 99.9 1.8E-21 3.9E-26 134.6 11.7 122 15-136 2-126 (203)
133 KOG0070 GTP-binding ADP-ribosy 99.9 9.6E-22 2.1E-26 130.1 9.5 123 9-136 13-135 (181)
134 cd01878 HflX HflX subfamily. 99.9 2.7E-21 5.9E-26 133.7 11.9 124 11-138 39-172 (204)
135 PRK03003 GTP-binding protein D 99.9 1.7E-21 3.6E-26 149.8 11.2 134 12-154 37-180 (472)
136 cd01898 Obg Obg subfamily. Th 99.9 6.9E-21 1.5E-25 127.8 11.9 121 15-137 2-132 (170)
137 KOG0071 GTP-binding ADP-ribosy 99.9 7E-21 1.5E-25 120.6 10.7 122 11-137 15-136 (180)
138 cd01897 NOG NOG1 is a nucleola 99.9 1.7E-20 3.6E-25 125.8 12.5 120 14-138 1-132 (168)
139 cd01891 TypA_BipA TypA (tyrosi 99.9 7.6E-21 1.6E-25 130.6 11.0 116 14-135 3-133 (194)
140 PRK15494 era GTPase Era; Provi 99.8 1.4E-20 3.1E-25 139.0 11.4 116 11-134 50-175 (339)
141 PRK12299 obgE GTPase CgtA; Rev 99.8 3.3E-20 7.1E-25 136.6 13.0 123 14-138 159-290 (335)
142 TIGR03156 GTP_HflX GTP-binding 99.8 2.9E-20 6.2E-25 137.8 12.0 122 12-137 188-319 (351)
143 cd04171 SelB SelB subfamily. 99.8 4.6E-20 9.9E-25 122.9 11.9 115 15-135 2-120 (164)
144 COG1160 Predicted GTPases [Gen 99.8 5E-21 1.1E-25 142.3 7.3 132 14-154 4-146 (444)
145 TIGR00436 era GTP-binding prot 99.8 3.2E-20 6.8E-25 133.6 11.0 114 15-136 2-124 (270)
146 cd00882 Ras_like_GTPase Ras-li 99.8 1E-19 2.2E-24 118.7 12.4 119 18-137 1-120 (157)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.8 6.3E-20 1.4E-24 139.5 12.0 114 12-134 202-325 (442)
148 cd01894 EngA1 EngA1 subfamily. 99.8 2.8E-20 6.1E-25 123.0 8.9 129 17-154 1-139 (157)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.8 7.5E-20 1.6E-24 120.9 10.5 113 14-136 2-124 (157)
150 TIGR03598 GTPase_YsxC ribosome 99.8 1.4E-19 3.1E-24 122.8 11.9 120 7-135 12-145 (179)
151 KOG3883 Ras family small GTPas 99.8 1.9E-19 4.1E-24 115.7 11.6 128 12-140 8-139 (198)
152 KOG0075 GTP-binding ADP-ribosy 99.8 1.2E-20 2.6E-25 120.4 6.0 118 12-134 19-137 (186)
153 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.6E-19 3.4E-24 120.9 11.5 114 15-134 2-117 (168)
154 PTZ00099 rab6; Provisional 99.8 2.2E-19 4.7E-24 121.6 12.1 103 39-143 7-109 (176)
155 PF02421 FeoB_N: Ferrous iron 99.8 3.8E-20 8.2E-25 122.0 7.9 131 14-154 1-142 (156)
156 PRK00093 GTP-binding protein D 99.8 4.2E-20 9E-25 141.0 9.2 132 14-154 2-143 (435)
157 TIGR03594 GTPase_EngA ribosome 99.8 8.5E-20 1.8E-24 139.0 10.3 131 15-154 1-141 (429)
158 TIGR02729 Obg_CgtA Obg family 99.8 3E-19 6.6E-24 131.3 12.8 121 14-136 158-290 (329)
159 cd01881 Obg_like The Obg-like 99.8 9.5E-20 2.1E-24 122.7 9.2 119 18-138 1-139 (176)
160 cd01879 FeoB Ferrous iron tran 99.8 3E-19 6.5E-24 118.3 11.1 109 18-136 1-118 (158)
161 KOG0074 GTP-binding ADP-ribosy 99.8 2.1E-19 4.4E-24 114.1 9.3 126 9-138 13-138 (185)
162 TIGR02528 EutP ethanolamine ut 99.8 7.2E-20 1.6E-24 119.7 7.0 96 15-133 2-102 (142)
163 PRK04213 GTP-binding protein; 99.8 9.4E-20 2E-24 125.7 7.4 114 12-135 8-146 (201)
164 PRK05291 trmE tRNA modificatio 99.8 2.2E-19 4.7E-24 137.1 9.8 115 12-136 214-338 (449)
165 PRK09518 bifunctional cytidyla 99.8 3.8E-19 8.3E-24 142.5 11.2 136 12-154 274-417 (712)
166 TIGR01393 lepA GTP-binding pro 99.8 8.5E-19 1.8E-23 137.6 12.7 116 13-134 3-137 (595)
167 PRK11058 GTPase HflX; Provisio 99.8 1.4E-18 3E-23 131.6 12.7 119 13-134 197-324 (426)
168 PRK12297 obgE GTPase CgtA; Rev 99.8 2.3E-18 4.9E-23 130.0 13.5 118 15-134 160-289 (424)
169 cd04168 TetM_like Tet(M)-like 99.8 1.1E-18 2.5E-23 123.1 10.5 132 15-152 1-150 (237)
170 PRK00089 era GTPase Era; Revie 99.8 1.5E-18 3.2E-23 126.2 11.1 117 12-134 4-128 (292)
171 PRK03003 GTP-binding protein D 99.8 8.6E-19 1.9E-23 134.8 10.3 115 12-134 210-337 (472)
172 COG1159 Era GTPase [General fu 99.8 2E-18 4.3E-23 122.5 10.8 137 12-154 5-153 (298)
173 PRK12296 obgE GTPase CgtA; Rev 99.8 2.8E-18 6.1E-23 131.2 12.2 121 13-136 159-301 (500)
174 KOG1673 Ras GTPases [General f 99.8 1.5E-18 3.3E-23 111.8 8.8 122 8-132 15-137 (205)
175 cd01895 EngA2 EngA2 subfamily. 99.8 2.9E-18 6.2E-23 114.9 10.5 115 13-135 2-129 (174)
176 TIGR03594 GTPase_EngA ribosome 99.8 4.2E-18 9E-23 129.8 12.3 114 11-132 170-296 (429)
177 cd04163 Era Era subfamily. Er 99.8 7.1E-18 1.5E-22 112.1 11.6 115 13-133 3-125 (168)
178 cd00881 GTP_translation_factor 99.8 8.7E-18 1.9E-22 114.3 11.2 114 15-134 1-129 (189)
179 PRK12298 obgE GTPase CgtA; Rev 99.8 1.3E-17 2.7E-22 125.1 12.5 121 15-137 161-293 (390)
180 PRK00454 engB GTP-binding prot 99.8 1.3E-17 2.9E-22 114.4 11.7 118 9-135 20-151 (196)
181 cd04169 RF3 RF3 subfamily. Pe 99.8 1.2E-17 2.5E-22 119.9 10.9 116 14-135 3-139 (267)
182 TIGR00487 IF-2 translation ini 99.8 2.9E-17 6.2E-22 128.6 13.7 117 10-133 84-201 (587)
183 cd01889 SelB_euk SelB subfamil 99.8 1.2E-17 2.5E-22 114.6 10.0 115 14-134 1-135 (192)
184 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.3E-17 2.8E-22 115.8 9.5 115 15-134 1-145 (208)
185 cd04167 Snu114p Snu114p subfam 99.7 1.9E-17 4.2E-22 115.3 10.2 112 15-132 2-136 (213)
186 cd01885 EF2 EF2 (for archaea a 99.7 1.7E-17 3.8E-22 115.9 9.6 112 15-132 2-138 (222)
187 PRK09554 feoB ferrous iron tra 99.7 3.6E-17 7.7E-22 131.4 12.5 115 13-136 3-129 (772)
188 PRK00093 GTP-binding protein D 99.7 2.8E-17 6.1E-22 125.5 11.2 117 11-135 171-300 (435)
189 PRK05433 GTP-binding protein L 99.7 1.9E-17 4E-22 130.2 10.3 117 12-134 6-141 (600)
190 PRK12317 elongation factor 1-a 99.7 3.7E-17 8E-22 124.5 11.6 120 11-133 4-153 (425)
191 PF00009 GTP_EFTU: Elongation 99.7 8E-18 1.7E-22 115.1 6.9 116 12-133 2-136 (188)
192 cd00880 Era_like Era (E. coli 99.7 4.3E-17 9.3E-22 107.3 9.8 113 18-137 1-122 (163)
193 KOG0096 GTPase Ran/TC4/GSP1 (n 99.7 7.6E-17 1.7E-21 107.1 10.3 122 11-135 8-130 (216)
194 TIGR00475 selB selenocysteine- 99.7 1.3E-16 2.9E-21 125.2 13.1 113 14-137 1-121 (581)
195 CHL00189 infB translation init 99.7 6.3E-17 1.4E-21 128.8 11.2 119 10-134 241-362 (742)
196 KOG1707 Predicted Ras related/ 99.7 3.4E-17 7.3E-22 124.6 9.0 126 11-137 7-133 (625)
197 PF09439 SRPRB: Signal recogni 99.7 1.8E-17 3.9E-22 111.6 6.5 122 12-136 2-129 (181)
198 PRK05306 infB translation init 99.7 1.6E-16 3.5E-21 127.4 13.1 116 10-134 287-404 (787)
199 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.5E-16 3.3E-21 109.2 11.3 117 13-135 2-134 (195)
200 PRK09518 bifunctional cytidyla 99.7 1E-16 2.2E-21 128.6 11.8 116 12-135 449-577 (712)
201 cd01850 CDC_Septin CDC/Septin. 99.7 6.3E-16 1.4E-20 111.4 14.7 119 12-136 3-160 (276)
202 cd01888 eIF2_gamma eIF2-gamma 99.7 7.1E-17 1.5E-21 111.7 9.4 118 14-135 1-153 (203)
203 cd01886 EF-G Elongation factor 99.7 1.3E-16 2.8E-21 114.6 10.9 115 15-135 1-132 (270)
204 PF01926 MMR_HSR1: 50S ribosom 99.7 1.3E-16 2.9E-21 100.9 9.4 105 15-128 1-116 (116)
205 PRK10218 GTP-binding protein; 99.7 2.4E-16 5.2E-21 123.7 12.8 118 12-135 4-136 (607)
206 PRK00741 prfC peptide chain re 99.7 8.7E-17 1.9E-21 124.7 9.6 119 11-135 8-147 (526)
207 PRK15467 ethanolamine utilizat 99.7 8.8E-17 1.9E-21 107.1 8.3 101 15-135 3-107 (158)
208 TIGR00483 EF-1_alpha translati 99.7 2.8E-16 6.1E-21 119.7 11.3 121 11-133 5-155 (426)
209 COG1160 Predicted GTPases [Gen 99.7 1.9E-16 4.2E-21 118.1 9.8 123 12-142 177-312 (444)
210 TIGR00503 prfC peptide chain r 99.7 2.7E-16 5.9E-21 122.0 10.7 119 11-135 9-148 (527)
211 KOG1489 Predicted GTP-binding 99.7 4.5E-16 9.8E-21 111.2 10.4 138 15-154 198-348 (366)
212 TIGR01394 TypA_BipA GTP-bindin 99.7 3.5E-16 7.7E-21 122.8 10.8 116 14-135 2-132 (594)
213 KOG0077 Vesicle coat complex C 99.7 1.1E-16 2.4E-21 104.3 6.5 119 12-135 19-137 (193)
214 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 4.7E-16 1E-20 108.9 10.0 120 15-135 1-127 (232)
215 COG2229 Predicted GTPase [Gene 99.7 1.5E-15 3.2E-20 100.8 11.6 124 8-137 5-139 (187)
216 cd04170 EF-G_bact Elongation f 99.7 4.9E-16 1.1E-20 111.8 10.2 114 15-134 1-131 (268)
217 KOG1423 Ras-like GTPase ERA [C 99.7 5.5E-16 1.2E-20 110.3 10.0 129 4-137 63-203 (379)
218 KOG0076 GTP-binding ADP-ribosy 99.7 4.3E-17 9.2E-22 106.9 3.9 121 12-137 16-144 (197)
219 COG0218 Predicted GTPase [Gene 99.7 1.2E-15 2.6E-20 103.1 10.9 122 7-137 18-153 (200)
220 cd01896 DRG The developmentall 99.7 2.6E-15 5.7E-20 105.9 13.2 82 15-98 2-91 (233)
221 COG0486 ThdF Predicted GTPase 99.7 4.6E-16 9.9E-21 116.4 9.6 118 12-136 216-341 (454)
222 TIGR00437 feoB ferrous iron tr 99.7 6.8E-16 1.5E-20 121.3 10.9 107 20-136 1-116 (591)
223 TIGR00491 aIF-2 translation in 99.7 5.9E-16 1.3E-20 121.2 10.3 112 13-133 4-135 (590)
224 cd04104 p47_IIGP_like p47 (47- 99.7 8.2E-16 1.8E-20 105.9 9.5 111 13-132 1-120 (197)
225 TIGR00485 EF-Tu translation el 99.7 2.2E-15 4.7E-20 113.8 12.2 120 10-135 9-144 (394)
226 PRK13351 elongation factor G; 99.7 7.9E-16 1.7E-20 123.3 9.9 119 11-135 6-141 (687)
227 COG2262 HflX GTPases [General 99.6 1.6E-15 3.4E-20 111.8 10.6 124 9-136 188-321 (411)
228 CHL00071 tufA elongation facto 99.6 2.5E-15 5.4E-20 113.9 12.0 121 10-136 9-145 (409)
229 cd01883 EF1_alpha Eukaryotic e 99.6 9.3E-16 2E-20 107.3 8.6 114 15-132 1-150 (219)
230 cd01876 YihA_EngB The YihA (En 99.6 2.5E-15 5.5E-20 100.0 10.4 112 15-135 1-126 (170)
231 TIGR00484 EF-G translation elo 99.6 3E-15 6.5E-20 119.9 12.3 119 11-135 8-143 (689)
232 TIGR03680 eif2g_arch translati 99.6 2E-15 4.4E-20 114.3 9.5 120 12-135 3-150 (406)
233 PRK12735 elongation factor Tu; 99.6 7E-15 1.5E-19 111.1 12.4 120 9-134 8-143 (396)
234 PRK04004 translation initiatio 99.6 4.4E-15 9.5E-20 116.6 11.6 112 12-132 5-136 (586)
235 PRK05124 cysN sulfate adenylyl 99.6 3.6E-15 7.7E-20 114.7 10.6 121 10-135 24-176 (474)
236 TIGR00991 3a0901s02IAP34 GTP-b 99.6 1.1E-14 2.4E-19 105.3 11.9 130 10-142 35-176 (313)
237 COG1084 Predicted GTPase [Gene 99.6 1E-14 2.3E-19 104.8 11.5 124 12-141 167-302 (346)
238 cd01899 Ygr210 Ygr210 subfamil 99.6 8.9E-15 1.9E-19 107.1 11.2 81 16-96 1-111 (318)
239 KOG0072 GTP-binding ADP-ribosy 99.6 1.7E-15 3.7E-20 96.7 5.3 118 11-133 16-133 (182)
240 PRK12736 elongation factor Tu; 99.6 1.5E-14 3.2E-19 109.3 11.1 120 10-135 9-144 (394)
241 TIGR02034 CysN sulfate adenyly 99.6 6.9E-15 1.5E-19 111.4 9.2 117 14-135 1-149 (406)
242 KOG4423 GTP-binding protein-li 99.6 1.6E-17 3.4E-22 110.1 -4.5 128 10-138 22-154 (229)
243 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.2E-14 2.7E-19 100.0 9.6 117 14-135 1-132 (196)
244 PRK04000 translation initiatio 99.6 7.5E-15 1.6E-19 111.2 9.2 121 12-136 8-156 (411)
245 PLN03126 Elongation factor Tu; 99.6 1.2E-14 2.6E-19 111.6 10.5 120 10-135 78-213 (478)
246 PRK12739 elongation factor G; 99.6 1.8E-14 3.8E-19 115.5 11.5 120 10-135 5-141 (691)
247 cd01853 Toc34_like Toc34-like 99.6 2.9E-14 6.2E-19 101.3 11.1 126 9-135 27-165 (249)
248 PRK05506 bifunctional sulfate 99.6 1.2E-14 2.6E-19 115.5 9.8 118 11-133 22-171 (632)
249 PF10662 PduV-EutP: Ethanolami 99.6 1.2E-14 2.6E-19 94.1 7.7 118 15-154 3-127 (143)
250 TIGR00490 aEF-2 translation el 99.6 2.9E-14 6.2E-19 114.7 10.8 117 11-133 17-152 (720)
251 PRK10512 selenocysteinyl-tRNA- 99.6 6.5E-14 1.4E-18 110.6 12.3 115 15-136 2-121 (614)
252 COG0370 FeoB Fe2+ transport sy 99.6 2.2E-14 4.8E-19 111.6 9.2 129 14-152 4-143 (653)
253 cd04165 GTPBP1_like GTPBP1-lik 99.6 5.5E-14 1.2E-18 98.6 10.0 114 15-136 1-155 (224)
254 PLN03127 Elongation factor Tu; 99.6 8E-14 1.7E-18 106.5 11.7 120 10-135 58-193 (447)
255 PRK00007 elongation factor G; 99.5 7.6E-14 1.7E-18 111.9 12.1 120 10-135 7-143 (693)
256 PRK09602 translation-associate 99.5 2E-13 4.3E-18 102.8 12.7 82 14-95 2-113 (396)
257 PRK00049 elongation factor Tu; 99.5 1.2E-13 2.6E-18 104.3 11.4 119 10-134 9-143 (396)
258 COG0536 Obg Predicted GTPase [ 99.5 1.1E-13 2.3E-18 100.1 10.3 118 16-135 162-291 (369)
259 COG4108 PrfC Peptide chain rel 99.5 3.1E-14 6.7E-19 105.7 7.3 124 10-139 9-153 (528)
260 PTZ00141 elongation factor 1- 99.5 3.8E-13 8.2E-18 102.9 11.6 116 11-131 5-157 (446)
261 PLN00043 elongation factor 1-a 99.5 4.6E-13 1E-17 102.4 11.6 115 12-132 6-158 (447)
262 KOG1191 Mitochondrial GTPase [ 99.5 1.6E-13 3.4E-18 103.2 7.2 123 11-134 266-404 (531)
263 PLN00116 translation elongatio 99.5 3.3E-13 7.2E-18 110.1 8.9 118 9-132 15-163 (843)
264 PF04548 AIG1: AIG1 family; I 99.4 4.7E-13 1E-17 93.2 8.2 119 14-136 1-133 (212)
265 PTZ00416 elongation factor 2; 99.4 4.1E-13 9E-18 109.5 8.9 117 10-132 16-157 (836)
266 COG5256 TEF1 Translation elong 99.4 1.8E-12 3.8E-17 96.0 10.1 129 11-143 5-169 (428)
267 KOG0090 Signal recognition par 99.4 9.3E-13 2E-17 89.5 7.6 119 14-136 39-162 (238)
268 COG3596 Predicted GTPase [Gene 99.4 3.7E-13 7.9E-18 94.9 5.7 119 10-134 36-163 (296)
269 COG1163 DRG Predicted GTPase [ 99.4 8.3E-12 1.8E-16 89.9 12.6 85 12-98 62-154 (365)
270 PRK12740 elongation factor G; 99.4 1.3E-12 2.9E-17 104.7 9.0 111 19-135 1-128 (668)
271 PF00350 Dynamin_N: Dynamin fa 99.4 9.8E-12 2.1E-16 83.3 10.9 62 63-129 103-168 (168)
272 PRK09866 hypothetical protein; 99.4 7.4E-12 1.6E-16 97.8 11.3 68 62-133 231-303 (741)
273 cd00066 G-alpha G protein alph 99.4 4.2E-12 9.2E-17 93.4 9.6 75 59-134 159-243 (317)
274 PTZ00258 GTP-binding protein; 99.4 8.7E-12 1.9E-16 93.4 11.2 85 11-95 19-126 (390)
275 smart00010 small_GTPase Small 99.4 5.2E-12 1.1E-16 80.3 8.7 93 14-137 1-95 (124)
276 PRK07560 elongation factor EF- 99.4 1.8E-12 3.9E-17 104.6 7.7 117 10-132 17-152 (731)
277 COG2895 CysN GTPases - Sulfate 99.4 1.2E-11 2.7E-16 89.9 10.5 129 10-143 3-163 (431)
278 TIGR02836 spore_IV_A stage IV 99.3 1.4E-11 3.1E-16 91.9 10.7 118 11-132 15-193 (492)
279 PF00735 Septin: Septin; Inte 99.3 4.5E-11 9.6E-16 86.4 13.0 120 12-137 3-160 (281)
280 PTZ00327 eukaryotic translatio 99.3 9.2E-12 2E-16 95.3 9.3 122 10-135 31-187 (460)
281 COG0532 InfB Translation initi 99.3 1.2E-11 2.6E-16 94.1 9.8 116 13-135 5-123 (509)
282 KOG1707 Predicted Ras related/ 99.3 5.8E-11 1.3E-15 91.1 12.9 125 5-135 417-542 (625)
283 TIGR00993 3a0901s04IAP86 chlor 99.3 2.7E-11 5.8E-16 95.0 11.1 121 11-134 116-251 (763)
284 COG0480 FusA Translation elong 99.3 1.6E-11 3.5E-16 97.7 10.0 120 10-135 7-144 (697)
285 smart00275 G_alpha G protein a 99.3 1.4E-11 2.9E-16 91.5 9.0 73 61-134 184-266 (342)
286 KOG0462 Elongation factor-type 99.3 4.7E-11 1E-15 91.1 10.3 123 9-137 56-195 (650)
287 KOG0468 U5 snRNP-specific prot 99.2 5E-11 1.1E-15 92.8 9.3 117 9-131 124-261 (971)
288 smart00053 DYNc Dynamin, GTPas 99.2 1.4E-10 3.1E-15 81.9 10.4 120 11-135 24-208 (240)
289 PF05049 IIGP: Interferon-indu 99.2 1.3E-11 2.9E-16 91.6 5.1 112 11-131 33-153 (376)
290 cd01882 BMS1 Bms1. Bms1 is an 99.2 9E-11 1.9E-15 82.5 8.8 110 11-134 37-148 (225)
291 COG0481 LepA Membrane GTPase L 99.2 1.1E-10 2.5E-15 87.9 9.6 121 11-137 7-146 (603)
292 KOG0458 Elongation factor 1 al 99.2 1.4E-10 3.1E-15 89.0 10.1 132 8-143 172-339 (603)
293 KOG1954 Endocytosis/signaling 99.2 1.7E-10 3.8E-15 84.6 9.8 125 8-137 53-229 (532)
294 KOG1145 Mitochondrial translat 99.2 1.4E-10 3E-15 88.7 9.5 119 10-135 150-269 (683)
295 PRK09601 GTP-binding protein Y 99.2 8.3E-11 1.8E-15 87.3 7.6 82 14-95 3-107 (364)
296 cd01900 YchF YchF subfamily. 99.1 7.4E-11 1.6E-15 84.8 5.7 80 16-95 1-103 (274)
297 KOG0082 G-protein alpha subuni 99.1 2.1E-10 4.5E-15 84.4 7.2 76 59-135 193-278 (354)
298 COG1217 TypA Predicted membran 99.1 5.9E-10 1.3E-14 83.9 9.2 119 13-137 5-138 (603)
299 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 4.2E-10 9.2E-15 73.5 6.2 54 15-71 85-138 (141)
300 COG4917 EutP Ethanolamine util 99.1 2.5E-10 5.5E-15 71.5 4.3 104 15-139 3-110 (148)
301 PRK14845 translation initiatio 99.0 7.7E-10 1.7E-14 91.5 8.2 99 25-133 473-592 (1049)
302 cd01858 NGP_1 NGP-1. Autoanti 99.0 9E-10 2E-14 73.2 7.0 56 12-70 101-156 (157)
303 KOG3886 GTP-binding protein [S 99.0 4.5E-10 9.8E-15 77.6 5.6 120 13-134 4-131 (295)
304 PRK13768 GTPase; Provisional 99.0 6.2E-10 1.3E-14 79.5 6.5 73 62-136 98-179 (253)
305 KOG1490 GTP-binding protein CR 99.0 4E-10 8.8E-15 85.4 5.3 119 12-137 167-299 (620)
306 cd04178 Nucleostemin_like Nucl 99.0 1E-09 2.2E-14 74.0 6.6 56 12-70 116-171 (172)
307 KOG1532 GTPase XAB1, interacts 99.0 2.6E-09 5.7E-14 75.7 8.4 71 61-135 116-197 (366)
308 PF03029 ATP_bind_1: Conserved 99.0 4.9E-10 1.1E-14 79.3 4.6 73 62-135 92-172 (238)
309 COG0050 TufB GTPases - transla 99.0 1.8E-09 3.9E-14 77.2 7.1 125 8-137 7-146 (394)
310 KOG0467 Translation elongation 99.0 1.2E-09 2.5E-14 86.3 6.6 127 8-143 4-149 (887)
311 KOG2655 Septin family protein 99.0 1.1E-08 2.4E-13 75.5 11.0 120 12-137 20-176 (366)
312 COG5019 CDC3 Septin family pro 99.0 1.8E-08 3.9E-13 74.0 11.9 121 11-137 21-180 (373)
313 KOG3887 Predicted small GTPase 99.0 2.2E-09 4.8E-14 74.9 6.7 122 12-134 26-150 (347)
314 COG0012 Predicted GTPase, prob 99.0 1.4E-09 3.1E-14 80.1 5.8 83 14-96 3-109 (372)
315 cd01856 YlqF YlqF. Proteins o 98.9 4.8E-09 1E-13 70.7 6.6 57 12-71 114-170 (171)
316 cd01859 MJ1464 MJ1464. This f 98.9 5.7E-09 1.2E-13 69.2 6.8 56 12-70 100-155 (156)
317 PRK09563 rbgA GTPase YlqF; Rev 98.9 8.5E-09 1.8E-13 75.0 7.7 58 11-71 119-176 (287)
318 TIGR03596 GTPase_YlqF ribosome 98.9 7.2E-09 1.6E-13 75.0 7.1 58 11-71 116-173 (276)
319 KOG1547 Septin CDC10 and relat 98.9 2.3E-08 5.1E-13 69.7 9.2 115 12-132 45-197 (336)
320 COG1161 Predicted GTPases [Gen 98.8 7.7E-09 1.7E-13 76.3 6.2 57 12-71 131-187 (322)
321 KOG0447 Dynamin-like GTP bindi 98.8 5.4E-08 1.2E-12 75.1 9.3 87 62-152 413-512 (980)
322 KOG1486 GTP-binding protein DR 98.8 2.1E-07 4.6E-12 65.5 11.5 90 12-103 61-158 (364)
323 TIGR00092 GTP-binding protein 98.8 2.5E-08 5.5E-13 74.3 7.3 83 14-96 3-109 (368)
324 KOG1144 Translation initiation 98.8 1.3E-08 2.8E-13 80.6 5.9 114 12-135 474-608 (1064)
325 KOG0461 Selenocysteine-specifi 98.8 9.1E-08 2E-12 70.1 9.5 117 12-134 6-137 (522)
326 cd01855 YqeH YqeH. YqeH is an 98.8 1.9E-08 4E-13 68.9 5.8 54 14-70 128-189 (190)
327 KOG1491 Predicted GTP-binding 98.8 3.4E-08 7.3E-13 72.0 7.1 85 12-96 19-126 (391)
328 COG5257 GCD11 Translation init 98.7 3.6E-08 7.7E-13 71.5 6.9 140 11-154 8-183 (415)
329 TIGR00157 ribosome small subun 98.7 6E-08 1.3E-12 69.0 7.6 62 72-138 24-86 (245)
330 cd01849 YlqF_related_GTPase Yl 98.7 3.7E-08 8.1E-13 65.3 6.1 56 12-70 99-154 (155)
331 KOG0410 Predicted GTP binding 98.7 1.6E-08 3.4E-13 73.3 4.2 119 10-132 175-307 (410)
332 cd01851 GBP Guanylate-binding 98.7 7E-07 1.5E-11 62.8 11.5 88 11-98 5-105 (224)
333 KOG2486 Predicted GTPase [Gene 98.6 9E-08 2E-12 68.1 5.7 117 9-134 132-263 (320)
334 PF05783 DLIC: Dynein light in 98.6 4.8E-07 1E-11 69.7 9.9 86 14-101 26-117 (472)
335 KOG0464 Elongation factor G [T 98.6 9.1E-09 2E-13 76.9 0.3 122 7-134 31-169 (753)
336 KOG0448 Mitofusin 1 GTPase, in 98.6 6.4E-07 1.4E-11 70.5 10.0 119 11-135 107-277 (749)
337 PRK12289 GTPase RsgA; Reviewed 98.6 1.1E-07 2.4E-12 70.9 5.7 52 16-70 175-233 (352)
338 COG3276 SelB Selenocysteine-sp 98.6 4.5E-07 9.7E-12 68.2 8.7 118 15-137 2-121 (447)
339 PRK09435 membrane ATPase/prote 98.6 1.8E-07 3.8E-12 69.2 6.3 62 61-135 149-210 (332)
340 PRK12288 GTPase RsgA; Reviewed 98.6 1.6E-07 3.4E-12 70.0 6.0 56 16-74 208-270 (347)
341 COG1618 Predicted nucleotide k 98.5 1.4E-06 3E-11 57.5 9.1 113 12-131 4-142 (179)
342 TIGR03348 VI_IcmF type VI secr 98.5 4.6E-07 9.9E-12 77.0 8.4 111 15-132 113-256 (1169)
343 PF03193 DUF258: Protein of un 98.5 1.4E-07 3.1E-12 62.6 3.8 56 15-73 37-99 (161)
344 TIGR00157 ribosome small subun 98.5 3E-07 6.4E-12 65.5 5.4 55 15-73 122-183 (245)
345 PRK13796 GTPase YqeH; Provisio 98.5 2.9E-07 6.3E-12 69.1 5.4 55 14-71 161-220 (365)
346 TIGR03597 GTPase_YqeH ribosome 98.5 4.7E-07 1E-11 67.9 6.4 56 14-72 155-215 (360)
347 KOG0460 Mitochondrial translat 98.5 1.1E-06 2.4E-11 64.3 7.7 122 10-136 51-187 (449)
348 KOG0705 GTPase-activating prot 98.4 1.8E-07 3.8E-12 72.1 3.8 113 11-130 28-140 (749)
349 TIGR00750 lao LAO/AO transport 98.4 8.9E-07 1.9E-11 64.9 7.3 63 60-135 126-188 (300)
350 cd03112 CobW_like The function 98.4 1.2E-06 2.5E-11 58.4 7.1 64 61-131 87-158 (158)
351 KOG1424 Predicted GTP-binding 98.4 5.1E-07 1.1E-11 69.0 5.6 57 12-71 313-369 (562)
352 KOG0085 G protein subunit Galp 98.4 3.7E-08 8E-13 68.5 -0.8 83 52-135 190-282 (359)
353 KOG0099 G protein subunit Galp 98.3 8.2E-07 1.8E-11 62.9 4.6 75 59-134 200-284 (379)
354 PRK00098 GTPase RsgA; Reviewed 98.3 1.8E-06 3.9E-11 63.2 5.9 56 15-73 166-228 (298)
355 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.8E-06 6.1E-11 61.9 6.0 59 14-75 162-227 (287)
356 KOG3905 Dynein light intermedi 98.2 8.6E-06 1.9E-10 59.6 8.2 99 14-114 53-157 (473)
357 KOG3859 Septins (P-loop GTPase 98.2 2.4E-06 5.3E-11 61.1 5.3 122 10-137 39-194 (406)
358 KOG0465 Mitochondrial elongati 98.2 1.7E-06 3.6E-11 67.5 4.6 120 11-136 37-173 (721)
359 COG1162 Predicted GTPases [Gen 98.2 4.3E-06 9.3E-11 60.6 5.6 57 15-74 166-229 (301)
360 PF09547 Spore_IV_A: Stage IV 98.1 7.4E-05 1.6E-09 56.7 11.2 122 12-137 16-198 (492)
361 TIGR01425 SRP54_euk signal rec 98.1 2.1E-05 4.5E-10 60.1 8.2 113 13-133 100-253 (429)
362 KOG1143 Predicted translation 98.1 1.3E-05 2.8E-10 59.7 6.6 121 9-135 163-319 (591)
363 PF03266 NTPase_1: NTPase; In 98.1 4.4E-06 9.4E-11 56.2 3.9 52 15-68 1-52 (168)
364 KOG0469 Elongation factor 2 [T 98.1 1.3E-05 2.9E-10 61.7 6.8 127 12-144 18-176 (842)
365 PRK12289 GTPase RsgA; Reviewed 98.1 1.2E-05 2.7E-10 60.1 6.3 55 77-136 82-137 (352)
366 PF00503 G-alpha: G-protein al 98.1 7.8E-06 1.7E-10 62.0 5.2 74 59-133 234-317 (389)
367 cd01859 MJ1464 MJ1464. This f 98.0 4.2E-06 9.2E-11 55.4 2.9 54 75-134 3-56 (156)
368 PRK00098 GTPase RsgA; Reviewed 98.0 1.6E-05 3.5E-10 58.2 6.2 49 82-134 78-126 (298)
369 COG5192 BMS1 GTP-binding prote 98.0 4.1E-05 8.8E-10 59.9 8.3 110 12-135 68-179 (1077)
370 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.7E-05 3.8E-10 57.8 6.0 50 81-135 75-125 (287)
371 KOG2484 GTPase [General functi 98.0 6.2E-06 1.4E-10 61.5 3.4 57 11-70 250-306 (435)
372 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 8.1E-06 1.8E-10 53.2 3.6 55 79-137 6-60 (141)
373 KOG2485 Conserved ATP/GTP bind 97.9 1.4E-05 3.1E-10 57.9 4.6 59 11-70 141-205 (335)
374 COG3523 IcmF Type VI protein s 97.9 2.3E-05 4.9E-10 66.1 6.3 111 16-133 128-270 (1188)
375 KOG0466 Translation initiation 97.9 9.3E-06 2E-10 58.9 3.1 77 61-145 125-207 (466)
376 cd03115 SRP The signal recogni 97.9 4.1E-05 8.8E-10 51.5 5.7 67 61-135 83-155 (173)
377 TIGR00064 ftsY signal recognit 97.9 4.7E-05 1E-09 55.1 6.0 68 60-135 154-233 (272)
378 cd01855 YqeH YqeH. YqeH is an 97.8 1.9E-05 4.2E-10 54.0 3.7 54 73-134 23-76 (190)
379 PRK14738 gmk guanylate kinase; 97.8 2.1E-05 4.5E-10 54.6 3.9 25 12-36 12-36 (206)
380 PRK10416 signal recognition pa 97.8 0.00011 2.4E-09 54.3 7.9 23 12-34 113-135 (318)
381 cd01849 YlqF_related_GTPase Yl 97.8 3.8E-05 8.2E-10 50.8 4.8 64 86-154 1-66 (155)
382 PRK13695 putative NTPase; Prov 97.8 0.00025 5.4E-09 47.8 8.8 22 14-35 1-22 (174)
383 PF05621 TniB: Bacterial TniB 97.8 9.1E-05 2E-09 53.9 6.6 106 9-128 57-189 (302)
384 PRK14722 flhF flagellar biosyn 97.8 6.2E-05 1.3E-09 56.7 5.4 22 14-35 138-159 (374)
385 PRK14974 cell division protein 97.8 0.0003 6.5E-09 52.4 8.9 23 12-34 139-161 (336)
386 COG5258 GTPBP1 GTPase [General 97.7 0.00025 5.3E-09 53.2 8.2 123 9-137 113-273 (527)
387 KOG1487 GTP-binding protein DR 97.7 0.00025 5.4E-09 50.6 7.7 90 14-105 60-157 (358)
388 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00028 6.1E-09 38.5 5.9 43 85-130 14-58 (58)
389 PF13207 AAA_17: AAA domain; P 97.7 4.1E-05 8.9E-10 48.3 3.1 22 15-36 1-22 (121)
390 PRK08118 topology modulation p 97.7 4.1E-05 9E-10 51.4 3.0 22 15-36 3-24 (167)
391 cd01858 NGP_1 NGP-1. Autoanti 97.7 0.00011 2.4E-09 48.7 5.1 53 80-136 4-56 (157)
392 PRK12288 GTPase RsgA; Reviewed 97.7 0.0002 4.4E-09 53.6 6.9 48 83-135 119-166 (347)
393 COG0523 Putative GTPases (G3E 97.7 0.00076 1.6E-08 50.0 9.8 46 85-137 117-163 (323)
394 KOG4273 Uncharacterized conser 97.7 0.00032 6.8E-09 49.8 7.3 117 13-134 4-124 (418)
395 COG0563 Adk Adenylate kinase a 97.6 4.7E-05 1E-09 51.7 3.0 23 14-36 1-23 (178)
396 PRK07261 topology modulation p 97.6 5.7E-05 1.2E-09 50.9 3.0 22 15-36 2-23 (171)
397 COG1703 ArgK Putative periplas 97.6 0.00034 7.3E-09 50.8 7.0 24 12-35 50-73 (323)
398 cd00009 AAA The AAA+ (ATPases 97.6 0.00049 1.1E-08 44.1 7.3 24 14-37 20-43 (151)
399 PRK11537 putative GTP-binding 97.6 0.00033 7.2E-09 51.8 7.1 22 15-36 6-27 (318)
400 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00078 1.7E-08 40.2 7.6 97 16-127 2-99 (99)
401 cd02038 FleN-like FleN is a me 97.6 0.00032 7E-09 45.6 6.2 107 18-133 5-111 (139)
402 PF13671 AAA_33: AAA domain; P 97.6 7.1E-05 1.5E-09 48.6 3.0 21 16-36 2-22 (143)
403 PRK12727 flagellar biosynthesi 97.5 0.00027 5.8E-09 55.4 6.3 23 13-35 350-372 (559)
404 PRK14737 gmk guanylate kinase; 97.5 7.1E-05 1.5E-09 51.2 2.7 24 14-37 5-28 (186)
405 PF13521 AAA_28: AAA domain; P 97.5 5.8E-05 1.3E-09 50.3 2.2 22 15-36 1-22 (163)
406 COG1116 TauB ABC-type nitrate/ 97.5 8.3E-05 1.8E-09 52.5 2.9 24 15-38 31-54 (248)
407 cd01856 YlqF YlqF. Proteins o 97.5 6.7E-05 1.5E-09 50.5 2.1 53 76-136 11-63 (171)
408 COG0194 Gmk Guanylate kinase [ 97.4 7.6E-05 1.7E-09 50.5 1.9 24 14-37 5-28 (191)
409 cd02042 ParA ParA and ParB of 97.4 0.00078 1.7E-08 41.3 6.4 79 16-105 2-81 (104)
410 COG1136 SalX ABC-type antimicr 97.4 0.00012 2.5E-09 51.4 2.8 23 15-37 33-55 (226)
411 PF00005 ABC_tran: ABC transpo 97.4 0.00016 3.4E-09 46.6 3.2 23 15-37 13-35 (137)
412 cd03111 CpaE_like This protein 97.4 0.0009 1.9E-08 41.4 6.3 98 20-128 7-106 (106)
413 PF13555 AAA_29: P-loop contai 97.4 0.00021 4.5E-09 39.8 2.9 21 15-35 25-45 (62)
414 PRK00771 signal recognition pa 97.4 0.00064 1.4E-08 52.4 6.2 23 12-34 94-116 (437)
415 cd02019 NK Nucleoside/nucleoti 97.3 0.00022 4.7E-09 40.7 2.8 21 16-36 2-22 (69)
416 TIGR03597 GTPase_YqeH ribosome 97.3 0.00017 3.7E-09 54.3 3.1 56 71-134 50-105 (360)
417 PRK06217 hypothetical protein; 97.3 0.0002 4.2E-09 48.8 3.0 23 14-36 2-24 (183)
418 COG1126 GlnQ ABC-type polar am 97.3 0.0002 4.4E-09 49.7 2.9 24 15-38 30-53 (240)
419 COG1419 FlhF Flagellar GTP-bin 97.3 0.00065 1.4E-08 51.4 5.8 22 13-34 203-224 (407)
420 KOG0463 GTP-binding protein GP 97.3 0.0012 2.7E-08 49.5 7.1 26 9-34 129-154 (641)
421 smart00382 AAA ATPases associa 97.3 0.00026 5.7E-09 44.9 3.2 25 14-38 3-27 (148)
422 TIGR02475 CobW cobalamin biosy 97.3 0.0014 3E-08 49.1 7.3 21 16-36 7-27 (341)
423 TIGR02322 phosphon_PhnN phosph 97.3 0.00023 4.9E-09 48.1 2.9 22 15-36 3-24 (179)
424 COG3840 ThiQ ABC-type thiamine 97.3 0.00025 5.5E-09 48.1 2.9 25 14-38 26-50 (231)
425 PRK10078 ribose 1,5-bisphospho 97.3 0.00026 5.7E-09 48.2 3.2 22 15-36 4-25 (186)
426 cd00071 GMPK Guanosine monopho 97.3 0.00026 5.5E-09 46.0 2.9 21 16-36 2-22 (137)
427 PRK01889 GTPase RsgA; Reviewed 97.3 0.00029 6.4E-09 52.9 3.5 56 15-70 197-256 (356)
428 PF00004 AAA: ATPase family as 97.3 0.00027 5.9E-09 44.9 2.9 21 16-36 1-21 (132)
429 PF03205 MobB: Molybdopterin g 97.3 0.0003 6.6E-09 45.9 3.1 22 15-36 2-23 (140)
430 PRK14530 adenylate kinase; Pro 97.3 0.00027 5.8E-09 49.4 3.0 22 14-35 4-25 (215)
431 TIGR00101 ureG urease accessor 97.2 0.0003 6.5E-09 48.6 3.2 23 14-36 2-24 (199)
432 PRK03839 putative kinase; Prov 97.2 0.0003 6.5E-09 47.6 3.0 22 15-36 2-23 (180)
433 PRK10867 signal recognition pa 97.2 0.0032 6.9E-08 48.6 8.8 22 12-33 99-120 (433)
434 PF13238 AAA_18: AAA domain; P 97.2 0.0003 6.6E-09 44.5 2.9 21 16-36 1-21 (129)
435 COG3839 MalK ABC-type sugar tr 97.2 0.00027 5.9E-09 52.4 2.9 22 16-37 32-53 (338)
436 PRK05480 uridine/cytidine kina 97.2 0.00045 9.9E-09 47.9 3.9 24 12-35 5-28 (209)
437 KOG2423 Nucleolar GTPase [Gene 97.2 0.00014 3E-09 54.7 1.3 83 10-98 304-388 (572)
438 TIGR03263 guanyl_kin guanylate 97.2 0.00032 6.8E-09 47.4 2.9 23 15-37 3-25 (180)
439 PF04665 Pox_A32: Poxvirus A32 97.2 0.00036 7.7E-09 49.5 3.1 27 11-37 11-37 (241)
440 cd03238 ABC_UvrA The excision 97.2 0.00038 8.2E-09 47.2 3.1 22 14-35 22-43 (176)
441 KOG3347 Predicted nucleotide k 97.2 0.00025 5.4E-09 46.4 2.1 25 11-35 5-29 (176)
442 PLN02200 adenylate kinase fami 97.2 0.00053 1.2E-08 48.6 4.0 25 11-35 41-65 (234)
443 cd00820 PEPCK_HprK Phosphoenol 97.2 0.00037 8.1E-09 43.2 2.8 20 15-34 17-36 (107)
444 COG1117 PstB ABC-type phosphat 97.2 0.0003 6.4E-09 48.9 2.5 20 16-35 36-55 (253)
445 TIGR00235 udk uridine kinase. 97.2 0.0005 1.1E-08 47.7 3.6 23 13-35 6-28 (207)
446 cd01130 VirB11-like_ATPase Typ 97.2 0.00041 8.9E-09 47.3 3.1 23 14-36 26-48 (186)
447 PRK13949 shikimate kinase; Pro 97.2 0.0004 8.7E-09 46.7 3.0 21 15-35 3-23 (169)
448 KOG0780 Signal recognition par 97.2 0.00031 6.7E-09 52.7 2.6 53 59-111 182-240 (483)
449 KOG0459 Polypeptide release fa 97.2 0.00046 1E-08 52.0 3.5 119 10-132 76-230 (501)
450 cd02023 UMPK Uridine monophosp 97.1 0.00038 8.2E-09 47.9 2.9 21 16-36 2-22 (198)
451 TIGR00959 ffh signal recogniti 97.1 0.00075 1.6E-08 51.9 4.5 22 12-33 98-119 (428)
452 TIGR01360 aden_kin_iso1 adenyl 97.1 0.0004 8.6E-09 47.1 2.8 21 14-34 4-24 (188)
453 PRK14532 adenylate kinase; Pro 97.1 0.0004 8.6E-09 47.3 2.7 21 15-35 2-22 (188)
454 PRK14531 adenylate kinase; Pro 97.1 0.00048 1E-08 46.9 3.0 22 14-35 3-24 (183)
455 TIGR00073 hypB hydrogenase acc 97.1 0.00054 1.2E-08 47.5 3.3 27 10-36 19-45 (207)
456 PF07728 AAA_5: AAA domain (dy 97.1 0.00054 1.2E-08 44.3 3.1 21 15-35 1-21 (139)
457 cd01131 PilT Pilus retraction 97.1 0.00046 1E-08 47.6 2.9 22 16-37 4-25 (198)
458 COG1120 FepC ABC-type cobalami 97.1 0.00046 1E-08 49.4 2.9 21 15-35 30-50 (258)
459 COG4525 TauB ABC-type taurine 97.1 0.00046 1E-08 47.4 2.8 22 15-36 33-54 (259)
460 PRK02496 adk adenylate kinase; 97.1 0.00056 1.2E-08 46.5 3.2 22 14-35 2-23 (184)
461 PRK10751 molybdopterin-guanine 97.1 0.00059 1.3E-08 46.0 3.3 24 13-36 6-29 (173)
462 PRK08233 hypothetical protein; 97.1 0.00051 1.1E-08 46.4 2.9 23 14-36 4-26 (182)
463 cd03222 ABC_RNaseL_inhibitor T 97.1 0.00052 1.1E-08 46.6 2.9 23 15-37 27-49 (177)
464 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.1 0.00055 1.2E-08 47.7 3.2 23 15-37 32-54 (218)
465 PF13401 AAA_22: AAA domain; P 97.1 0.00052 1.1E-08 43.7 2.8 24 14-37 5-28 (131)
466 PTZ00088 adenylate kinase 1; P 97.1 0.00053 1.2E-08 48.4 3.0 22 14-35 7-28 (229)
467 PRK00300 gmk guanylate kinase; 97.1 0.00052 1.1E-08 47.4 2.9 23 14-36 6-28 (205)
468 COG3638 ABC-type phosphate/pho 97.1 0.00054 1.2E-08 48.2 2.8 21 15-35 32-52 (258)
469 TIGR00960 3a0501s02 Type II (G 97.0 0.00061 1.3E-08 47.5 3.1 23 15-37 31-53 (216)
470 cd03225 ABC_cobalt_CbiO_domain 97.0 0.00063 1.4E-08 47.2 3.2 23 15-37 29-51 (211)
471 cd03261 ABC_Org_Solvent_Resist 97.0 0.00062 1.3E-08 48.1 3.2 23 15-37 28-50 (235)
472 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00057 1.2E-08 48.7 2.9 21 15-35 32-52 (254)
473 cd03226 ABC_cobalt_CbiO_domain 97.0 0.00064 1.4E-08 47.0 3.1 23 15-37 28-50 (205)
474 cd01428 ADK Adenylate kinase ( 97.0 0.00051 1.1E-08 46.9 2.5 22 15-36 1-22 (194)
475 TIGR03608 L_ocin_972_ABC putat 97.0 0.00069 1.5E-08 46.8 3.2 23 15-37 26-48 (206)
476 PRK13851 type IV secretion sys 97.0 0.00062 1.3E-08 50.9 3.1 25 12-36 161-185 (344)
477 TIGR01166 cbiO cobalt transpor 97.0 0.00063 1.4E-08 46.5 2.9 23 15-37 20-42 (190)
478 cd03264 ABC_drug_resistance_li 97.0 0.0006 1.3E-08 47.3 2.8 23 15-37 27-49 (211)
479 cd02025 PanK Pantothenate kina 97.0 0.00057 1.2E-08 48.0 2.7 20 16-35 2-21 (220)
480 TIGR01351 adk adenylate kinase 97.0 0.00053 1.1E-08 47.7 2.5 21 15-35 1-21 (210)
481 COG3640 CooC CO dehydrogenase 97.0 0.0089 1.9E-07 42.2 8.4 49 79-132 150-198 (255)
482 TIGR02673 FtsE cell division A 97.0 0.00073 1.6E-08 47.0 3.2 23 15-37 30-52 (214)
483 cd03292 ABC_FtsE_transporter F 97.0 0.00073 1.6E-08 46.9 3.2 23 15-37 29-51 (214)
484 TIGR01313 therm_gnt_kin carboh 97.0 0.00052 1.1E-08 45.7 2.3 21 16-36 1-21 (163)
485 cd03265 ABC_DrrA DrrA is the A 97.0 0.00074 1.6E-08 47.2 3.2 23 15-37 28-50 (220)
486 TIGR02315 ABC_phnC phosphonate 97.0 0.00073 1.6E-08 47.9 3.1 23 15-37 30-52 (243)
487 cd03224 ABC_TM1139_LivF_branch 97.0 0.00073 1.6E-08 47.2 3.1 23 15-37 28-50 (222)
488 cd03293 ABC_NrtD_SsuB_transpor 97.0 0.00077 1.7E-08 47.1 3.2 23 15-37 32-54 (220)
489 PF13191 AAA_16: AAA ATPase do 97.0 0.00066 1.4E-08 45.8 2.7 24 12-35 23-46 (185)
490 cd03259 ABC_Carb_Solutes_like 97.0 0.00078 1.7E-08 46.8 3.2 23 15-37 28-50 (213)
491 PRK04195 replication factor C 97.0 0.0023 5.1E-08 50.1 6.0 24 13-36 39-62 (482)
492 cd03260 ABC_PstB_phosphate_tra 97.0 0.0008 1.7E-08 47.2 3.1 23 15-37 28-50 (227)
493 PRK00625 shikimate kinase; Pro 97.0 0.00081 1.8E-08 45.4 3.0 21 15-35 2-22 (173)
494 cd03262 ABC_HisP_GlnQ_permease 97.0 0.00082 1.8E-08 46.7 3.2 23 15-37 28-50 (213)
495 TIGR01359 UMP_CMP_kin_fam UMP- 97.0 0.00072 1.6E-08 45.8 2.8 20 16-35 2-21 (183)
496 cd03269 ABC_putative_ATPase Th 97.0 0.00083 1.8E-08 46.6 3.2 23 15-37 28-50 (210)
497 TIGR02211 LolD_lipo_ex lipopro 96.9 0.00084 1.8E-08 46.9 3.2 23 15-37 33-55 (221)
498 PRK05057 aroK shikimate kinase 96.9 0.00084 1.8E-08 45.3 3.0 23 14-36 5-27 (172)
499 COG3842 PotA ABC-type spermidi 96.9 0.00073 1.6E-08 50.5 2.9 23 16-38 34-56 (352)
500 cd03218 ABC_YhbG The ABC trans 96.9 0.00085 1.8E-08 47.2 3.1 23 15-37 28-50 (232)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-35 Score=194.54 Aligned_cols=140 Identities=57% Similarity=0.943 Sum_probs=129.7
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
.+..++.+||+++|.+|+|||||+.||....| ..+..|.|+++..+.+.++++.+++++|||+|+++|+.+...++|.+
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 35678999999999999999999999999999 67778999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhc
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLS 148 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 148 (154)
|++|+|||+++.+||..+.. |++.++++ ...+.|.++||||||+.+.+.+..++...|...
T Consensus 83 hGii~vyDiT~~~SF~~v~~-Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~ 143 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKR-WIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADE 143 (205)
T ss_pred CeEEEEEEcccHHHhhhHHH-HHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHh
Confidence 99999999999999999999 99999998 666789999999999999999988887666443
No 2
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-32 Score=180.26 Aligned_cols=133 Identities=37% Similarity=0.631 Sum_probs=124.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
.-+.+|++++|..++||||||+|++.+.+ ..+.+++|+++....+.+.+..+.+++|||+|+++|+.+.+.|+|++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 34559999999999999999999999999 78899999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW 143 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~ 143 (154)
|+|||+++..+|++... |++.+++..+..+.-++|||||.||.+++++..+|..
T Consensus 99 viVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~ 152 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGE 152 (221)
T ss_pred EEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHH
Confidence 99999999999999999 9999998766667889999999999999998776654
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-32 Score=178.53 Aligned_cols=132 Identities=42% Similarity=0.754 Sum_probs=122.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+|++++|..++|||||+.|+..++|.+ ..+++|..+.+..+.+++..+++.||||.|+++|..+.++++|+++++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 56899999999999999999999999944 58999999999999999999999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF 145 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (154)
|||+++.+||..+.. |.+.+++. ..++.-+.|||||+||...+++...|...+
T Consensus 84 vYDit~~~SF~~aK~-WvkeL~~~-~~~~~vialvGNK~DL~~~R~V~~~ea~~y 136 (200)
T KOG0092|consen 84 VYDITDEESFEKAKN-WVKELQRQ-ASPNIVIALVGNKADLLERREVEFEEAQAY 136 (200)
T ss_pred EEecccHHHHHHHHH-HHHHHHhh-CCCCeEEEEecchhhhhhcccccHHHHHHH
Confidence 999999999999999 99999988 447888899999999999899887776654
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=1.5e-31 Score=172.43 Aligned_cols=137 Identities=65% Similarity=1.026 Sum_probs=127.2
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-ceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPT-IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
+.....+||+++|.+|+|||+|+.++..+.+.+..++ .|.++..+.+.+++..+++.+|||+|+++|+.+.+.++|.+.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 4556779999999999999999999999999666665 899999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF 145 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (154)
++|+|||++.+++|..+.. |.+++..++.++++-.++|+||+|...++.+..+|...|
T Consensus 86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kf 143 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKF 143 (209)
T ss_pred eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHH
Confidence 9999999999999999955 999999999999999999999999998899988877665
No 5
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.8e-31 Score=173.43 Aligned_cols=134 Identities=46% Similarity=0.827 Sum_probs=125.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+|++++|..|+|||||+.++..++| +..-.|.|+++..+.+.++++.+++++|||.|++.|++....+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45779999999999999999999999999 66668899999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF 145 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (154)
++|||++++++|..+.+ |+..++.+ ...+.-++|+|||+||...+.+..+|...|
T Consensus 83 lLVydit~r~sF~hL~~-wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaF 137 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTS-WLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAF 137 (216)
T ss_pred EEEEEccchhhHHHHHH-HHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHH
Confidence 99999999999999999 99999987 678889999999999999999988777654
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.6e-30 Score=174.86 Aligned_cols=135 Identities=55% Similarity=0.941 Sum_probs=126.4
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
++.++.+|++++|.+++||||++.+|..+.+ ..+..+.|+++..+.+.+++..+.+++|||.|+++++.+...+++.++
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~ 86 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM 86 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence 3778999999999999999999999999999 788899999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH 144 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~ 144 (154)
++++|||+++..+|+++.. |...+..+ ...+.|.+|||||+|+.+++++..+....
T Consensus 87 gi~LvyDitne~Sfeni~~-W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~ 142 (207)
T KOG0078|consen 87 GILLVYDITNEKSFENIRN-WIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEA 142 (207)
T ss_pred eeEEEEEccchHHHHHHHH-HHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHH
Confidence 9999999999999999999 99999998 66789999999999999988886655443
No 7
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-30 Score=175.18 Aligned_cols=139 Identities=48% Similarity=0.797 Sum_probs=128.8
Q ss_pred cccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031704 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83 (154)
Q Consensus 5 ~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (154)
..+...++.+||+++|.+++|||-|+.|+..++| .+..++.|.++.+..+.++++.++.+||||.|+++|+.+...+++
T Consensus 6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 3356788999999999999999999999999999 788899999999999999999999999999999999999999999
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF 145 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (154)
.+.++++|||++...+|+.+.. |+.+++.+ .++++++++||||+||.+.+.+.-++...+
T Consensus 86 gAvGAllVYDITr~~Tfenv~r-WL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~ 145 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVER-WLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAF 145 (222)
T ss_pred ccceeEEEEechhHHHHHHHHH-HHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhH
Confidence 9999999999999999999988 99999998 778999999999999999888766665544
No 8
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.97 E-value=7.1e-30 Score=176.16 Aligned_cols=126 Identities=52% Similarity=0.888 Sum_probs=112.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
.|+++|..|+|||||++++..+.+ ..+.++.+.++....+.+++..+.+.+|||+|++.++.++..+++++|++++|||
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfD 81 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYD 81 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEE
Confidence 689999999999999999999999 5567788888888888899999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
++++++|+.+.. |...+... ...+.|+++||||+|+.+.+++...+.
T Consensus 82 vtd~~Sf~~l~~-w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~ 128 (202)
T cd04120 82 ITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQG 128 (202)
T ss_pred CcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHH
Confidence 999999999988 98888765 456789999999999987776655444
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.97 E-value=1.6e-29 Score=172.88 Aligned_cols=132 Identities=41% Similarity=0.716 Sum_probs=114.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
.+..+||+++|..|+|||||+.++..+.+ ..+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999888 45557777778777788899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH 144 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~ 144 (154)
++|||++++.+|+.+.. |.+.+... .++.|++|||||+||...+.+..++...
T Consensus 83 llVfD~t~~~Sf~~~~~-w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~ 135 (189)
T cd04121 83 ILVYDITNRWSFDGIDR-WIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQA 135 (189)
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHH
Confidence 99999999999999987 99998765 2578999999999998776665555443
No 10
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-30 Score=165.77 Aligned_cols=138 Identities=45% Similarity=0.807 Sum_probs=128.4
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
.+..+..+|++++|+.|.|||||++++..+++ .+...+.|+++..+.+.++++.+++++|||.|++.|+...+.+++.+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34677889999999999999999999999999 77788999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFL 146 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~ 146 (154)
.+.++|||++++++|+.+.. |+...+.. ..+++-++++|||.||..++++...|...|-
T Consensus 83 AGAlLVYD~TsrdsfnaLtn-WL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~Fa 141 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTN-WLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFA 141 (214)
T ss_pred cceEEEEeccchhhHHHHHH-HHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhh
Confidence 99999999999999999999 99998876 7788899999999999999999888776653
No 11
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1e-28 Score=173.24 Aligned_cols=130 Identities=25% Similarity=0.485 Sum_probs=111.2
Q ss_pred CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (154)
Q Consensus 1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (154)
|..+..+......+||+++|..|+|||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+.+
T Consensus 1 ~~~~~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~ 79 (232)
T cd04174 1 MKERRIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRP 79 (232)
T ss_pred CcccccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence 55555555666789999999999999999999999988 566778776664 4577889999999999999999999999
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.+++++|++++|||++++++|+.+...|.+.+.... ++.|++|||||+||.+
T Consensus 80 ~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~ 131 (232)
T cd04174 80 LCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRT 131 (232)
T ss_pred HHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc
Confidence 999999999999999999999986444999888753 4679999999999964
No 12
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.6e-29 Score=160.44 Aligned_cols=129 Identities=47% Similarity=0.890 Sum_probs=118.9
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
.....+||+++|..|+|||||+.++..+-+ +....+.|.++.++.+.++++++++++|||.|+++|+.+...+++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 456789999999999999999999999999 5566789999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
++++||+++..+|+.+.+ |+..+..+ .+...--|+||||.|+.+++++..
T Consensus 83 lilvydiscqpsfdclpe-wlreie~y-an~kvlkilvgnk~d~~drrevp~ 132 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPE-WLREIEQY-ANNKVLKILVGNKIDLADRREVPQ 132 (213)
T ss_pred EEEEEecccCcchhhhHH-HHHHHHHH-hhcceEEEeeccccchhhhhhhhH
Confidence 999999999999999999 99999998 566666789999999998887754
No 13
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.96 E-value=8e-29 Score=166.16 Aligned_cols=128 Identities=47% Similarity=0.835 Sum_probs=110.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|++|+|||||++++..+++ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988 55556777777777788888999999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
||++++++++.+.. |.+.+... ...+.|+++|+||+|+..++.+..++.
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~ 130 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEA 130 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHH
Confidence 99999999999988 88877665 446789999999999987665544333
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.96 E-value=1.1e-28 Score=167.90 Aligned_cols=120 Identities=27% Similarity=0.576 Sum_probs=105.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+++|||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|+++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999998 566777776553 56778999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+|||++++.+|+.+...|.+.++... ++.|++|||||+||.+
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~ 123 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT 123 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhc
Confidence 99999999999998555999888763 4689999999999964
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.96 E-value=2e-28 Score=165.77 Aligned_cols=119 Identities=32% Similarity=0.633 Sum_probs=104.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+|++++|.+++|||||+.++..+.+ ..+.++.+..+ ...+.+++..+.+.+|||+|++.++.+...+++++|++++||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6999999999999999999999999 56778887665 445677889999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|++++++|+.+...|.+.+.... .+.|++|||||+||.+++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccCh
Confidence 99999999998544999887653 478999999999996543
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.6e-28 Score=166.60 Aligned_cols=118 Identities=25% Similarity=0.570 Sum_probs=103.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
++||+++|++|+|||||++++.++.+ ..+.|+.+..+ ...+.+++..+.+.+|||+|++.+..+.+.+++++|++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 47999999999999999999999988 45667776555 35677889999999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
||++++++|+.+...|.+.++... ++.|+++||||+||.+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~ 119 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRT 119 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhc
Confidence 999999999997544999888763 5789999999999964
No 17
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.96 E-value=1.8e-28 Score=164.71 Aligned_cols=128 Identities=55% Similarity=0.955 Sum_probs=111.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+||+++|++|+|||||++++.+.++ ..+.++.+.++....+..++..+.+.+||+||++.+......+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999998 5667888877777778888888999999999999999888889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
|||++++++++.+.. |...+... ...+.|+++|+||+|+.+.+++..++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~ 130 (167)
T cd01867 82 VYDITDEKSFENIRN-WMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEE 130 (167)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHH
Confidence 999999999999988 98888765 44678999999999998665554433
No 18
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.6e-29 Score=157.75 Aligned_cols=134 Identities=45% Similarity=0.854 Sum_probs=122.5
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
.++.+.-+|++++|...+|||+|+.++.+..+ +....+.|+.+..+.+.-+.+.+.+++|||+|++.++.+...++|++
T Consensus 15 dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 15 DQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred cccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 45667889999999999999999999999999 78889999999999888888899999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+++++|||+++.++|..+.. |.-++..+ .-.+.|+|+|+||||+.+++.+..+..
T Consensus 95 mgfiLmyDitNeeSf~svqd-w~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g 149 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQD-WITQIKTY-SWDNAQVILVGNKCDMDSERVISHERG 149 (193)
T ss_pred ceEEEEEecCCHHHHHHHHH-HHHHheee-eccCceEEEEecccCCccceeeeHHHH
Confidence 99999999999999999999 99999887 566889999999999999988755443
No 19
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=7.3e-29 Score=163.20 Aligned_cols=132 Identities=36% Similarity=0.670 Sum_probs=116.7
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+|++++|.+|+|||||.|++..++| ..+..+.|.++..+.+.++++.+.+++|||+|+++|+.+...++|++|++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC 85 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC 85 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence 34569999999999999999999999999 78889999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCC---CCCcEEEEEeCCCCCCc--hhhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVDKVCP--WRLFLSGF 142 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~ivv~nK~Dl~~~--~~~~~~~~ 142 (154)
++|||++++.+|+.+.. |.+++..+... ...|+||+|||+|+... ++++....
T Consensus 86 vlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A 143 (210)
T KOG0394|consen 86 VLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA 143 (210)
T ss_pred EEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH
Confidence 99999999999999999 99887766332 23599999999999652 55544333
No 20
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=3.6e-28 Score=162.78 Aligned_cols=124 Identities=50% Similarity=0.913 Sum_probs=107.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
+.+||+++|++|+|||||++++.++.+ ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999888 4455677667777778888888899999999999999888889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
|||++++.+++.+.. |...+... ...+.|+++|+||+|+...+++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~ 126 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKCDLEEQREV 126 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECccccccccc
Confidence 999999999999888 88888765 3467899999999999766544
No 21
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.96 E-value=3.1e-28 Score=165.21 Aligned_cols=131 Identities=37% Similarity=0.734 Sum_probs=110.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG----------GKKMKLAIWDTAGQERFRTLTS 79 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 79 (154)
++.+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+. +..+.+.+||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 3569999999999999999999999988 5667777777766666554 4568999999999999999999
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
.+++++|++++|||+++++++..+.. |...+.......+.|+++|+||+|+..++++..++.
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~ 143 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQA 143 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHH
Confidence 99999999999999999999999988 998887764456789999999999987666544433
No 22
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.96 E-value=3.1e-28 Score=168.13 Aligned_cols=128 Identities=38% Similarity=0.646 Sum_probs=108.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+||+++|++|+|||||++++.++.+ ..+.++.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999988 5667888877777777777 7889999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhc---CCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
||++++++|+.+.. |...+.... ...+.|++||+||+|+.+.+.+..++.
T Consensus 81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~ 133 (201)
T cd04107 81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQM 133 (201)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHH
Confidence 99999999999987 887776532 235789999999999975554444333
No 23
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=3.6e-28 Score=162.67 Aligned_cols=129 Identities=47% Similarity=0.825 Sum_probs=112.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+||+++|++++|||||++++.++++ ..+.++.+.++....+..++..+.+.+||+||++.+..++..++++++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 458999999999999999999999988 5677888888888888888888999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|||++++.+++.+.. |...+... ...+.|+++|+||+|+...+.+..++.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~ 131 (165)
T cd01868 82 VYDITKKQTFENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEA 131 (165)
T ss_pred EEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECccccccccCCHHHH
Confidence 999999999999988 88888776 344689999999999977655544333
No 24
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.96 E-value=3.7e-28 Score=162.08 Aligned_cols=124 Identities=33% Similarity=0.571 Sum_probs=104.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++..+.+ ..+.++.+ ......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888 44455554 344566778888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++.+++.+.. |.+.+.......+.|+++|+||+|+.+.+.+..
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 126 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSR 126 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecH
Confidence 9999999999988 887777654456789999999999976555433
No 25
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.96 E-value=5.3e-28 Score=162.07 Aligned_cols=122 Identities=46% Similarity=0.884 Sum_probs=107.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++.++++ ..+.++.+.++....+..++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998 566777777777777777888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
|++++++++.+.. |...+... .....|+++|+||+|+..++.+
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~ 124 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTY-SWDNAQVILVGNKCDMEDERVV 124 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCCEEEEEECcccCccccc
Confidence 9999999999988 98888765 3457899999999999766544
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.96 E-value=4.4e-28 Score=163.65 Aligned_cols=130 Identities=31% Similarity=0.509 Sum_probs=109.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998 45567766444 34567788889999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH 144 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~ 144 (154)
||++++.+|+.+.. |...+.......+.|+++|+||+|+.+.+++..++...
T Consensus 81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~ 132 (172)
T cd04141 81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN 132 (172)
T ss_pred EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence 99999999999988 87777765445678999999999997766665544443
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.96 E-value=6.1e-28 Score=161.30 Aligned_cols=124 Identities=46% Similarity=0.856 Sum_probs=109.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++.++.+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 4899999999999999999999998 556788887777778888888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++++|+.+.. |.+.+... ...+.|+++|+||.|+..++++..
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~ 125 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEY-APEGVQKILIGNKADEEQKRQVGD 125 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCCCH
Confidence 9999999999988 98888765 345789999999999987766543
No 28
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=6.8e-28 Score=168.46 Aligned_cols=130 Identities=35% Similarity=0.554 Sum_probs=113.4
Q ss_pred CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (154)
Q Consensus 1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (154)
|+.++........+||+++|.+|+|||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||+|++.+..++.
T Consensus 1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 44444455557889999999999999999999999988 56788888888777777788889999999999999999999
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.+++.+|++|+|||++++.+++.+.. |...+... ..+.|+++||||+|+..
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~-w~~~i~~~--~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRV--CENIPIVLCGNKVDVKN 131 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEEchhhhh
Confidence 99999999999999999999999988 99888765 35689999999999953
No 29
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=8.8e-28 Score=161.48 Aligned_cols=129 Identities=47% Similarity=0.853 Sum_probs=111.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+|+|||||++++.++++ ..+.++.+.+.....+..++..+.+.+||+||++.+..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999988 455677777887788888888889999999999999998888999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+|+|++++.+++.+.. |...++.. ..++.|+++|+||.|+..++.+..++
T Consensus 82 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~ 131 (168)
T cd01866 82 LVYDITRRETFNHLTS-WLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEE 131 (168)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHH
Confidence 9999999999999988 99888775 34678999999999998655544433
No 30
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=7.3e-28 Score=162.18 Aligned_cols=127 Identities=40% Similarity=0.760 Sum_probs=110.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRGAQGIIM 90 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~v~ 90 (154)
.+||+++|++|+|||||+++++...+ ..+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999888 4566777777777788888889999999999998886 467788899999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
|||++++.+++.+.. |.+.+.......+.|+++|+||+|+...+++...
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 130 (170)
T cd04115 82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTD 130 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHH
Confidence 999999999999988 9988887655678999999999999776655443
No 31
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.96 E-value=7.1e-28 Score=160.95 Aligned_cols=123 Identities=35% Similarity=0.580 Sum_probs=104.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||++++..+.+ ..+.++.+ ......+.+++..+.+.+|||||++.+..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988 44445443 455567778888889999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
|++++.+++++.. |...+.......+.|+++|+||+|+..++.+.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~ 125 (163)
T cd04176 81 SLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVS 125 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccC
Confidence 9999999999988 87777765445678999999999997655443
No 32
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.96 E-value=9.1e-28 Score=160.93 Aligned_cols=126 Identities=63% Similarity=1.004 Sum_probs=109.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|++|+|||||++++.++.+ ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 48999999999999999999999888 55667777777777788888889999999999999999899999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
||++++++++.+.. |+..+... ...+.|+++|+||+|+..++.+...
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~ 128 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYS 128 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEEChhcccccCCCHH
Confidence 99999999999998 98888765 3456899999999999766555433
No 33
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=4.9e-28 Score=166.80 Aligned_cols=123 Identities=29% Similarity=0.507 Sum_probs=106.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-----GKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
+||+++|..++|||||++++..+.+ ..+.++.+.++....+.++ +..+.+++|||+|++.+..+...+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999998 5667788877777766664 467899999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhc------------------CCCCCcEEEEEeCCCCCCchhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYS------------------TNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+++|||++++.+++.+.. |...+.... ...+.|++|||||+|+.+++.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~ 147 (202)
T cd04102 81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence 999999999999999987 988886531 1246899999999999876544
No 34
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.96 E-value=7e-28 Score=161.21 Aligned_cols=125 Identities=29% Similarity=0.628 Sum_probs=108.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++.++++ ..+.++.+.++....+..++..+.+++|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998 666788888887778888889999999999999999988999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCC----CCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTN----QDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++.+++.+.. |...+...... .+.|+++|+||+|+..++....
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~ 130 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSE 130 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCH
Confidence 9999999999887 98888776443 5689999999999975444433
No 35
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.96 E-value=1.1e-27 Score=162.12 Aligned_cols=118 Identities=31% Similarity=0.561 Sum_probs=103.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||++++..+.+ ..+.|+.+..+. .....++..+.+.+|||+|++.+...+..+++.+|++++||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 7999999999999999999999998 667788776554 34567888899999999999999998988999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|++++++|+.+...|...+... ..+.|++||+||+|+.+.
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhC
Confidence 9999999999986698888765 346899999999999654
No 36
>PTZ00369 Ras-like protein; Provisional
Probab=99.96 E-value=8.9e-28 Score=164.42 Aligned_cols=126 Identities=33% Similarity=0.559 Sum_probs=107.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+||+++|.+|+|||||++++.++.+ ..+.++.+.++ ...+.+++..+.+.+|||||++++..++..+++.+|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 358999999999999999999999888 45566666555 4566788889999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|||++++++++.+.. |...+.......+.|+++|+||+|+...+.+..
T Consensus 83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~ 130 (189)
T PTZ00369 83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVST 130 (189)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence 999999999999988 887777664556889999999999976655443
No 37
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=1.9e-27 Score=165.97 Aligned_cols=128 Identities=47% Similarity=0.845 Sum_probs=113.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
.+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 45679999999999999999999999988 56678888888888888999999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
++|||+++..+++.+.. |+..+... ...+.|+++|+||+|+...+.+..
T Consensus 89 ilv~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~ 137 (216)
T PLN03110 89 LLVYDITKRQTFDNVQR-WLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAE 137 (216)
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEChhcccccCCCH
Confidence 99999999999999888 98888765 446789999999999976655543
No 38
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=2.2e-27 Score=165.03 Aligned_cols=135 Identities=68% Similarity=1.135 Sum_probs=116.2
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
.......+||+++|.+|+|||||+++|++..+..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 34556679999999999999999999999988777888888887788888888899999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++++|||++++++|+.+...|...+.......+.|+++|+||+|+...+.+...+
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~ 142 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREE 142 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHH
Confidence 9999999999999999988788877765445567999999999997665554333
No 39
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=1.8e-27 Score=158.97 Aligned_cols=117 Identities=38% Similarity=0.670 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||++++..+.+ +...++.+.+.......+++..+.+.+|||+|++.+..++..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 4899999999999999999999988 455566666666666777888999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|++++.+++.+.. |...+... ..+.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~--~~~~p~ivv~nK~Dl~~ 118 (161)
T cd04124 81 DVTRKITYKNLSK-WYEELREY--RPEIPCIVVANKIDLDP 118 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEECccCch
Confidence 9999999999887 88888654 34689999999999953
No 40
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.96 E-value=1.6e-27 Score=163.44 Aligned_cols=119 Identities=29% Similarity=0.562 Sum_probs=104.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|..++|||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|++.++.++..+++++|++++|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 38999999999999999999999998 566778776553 4567788999999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
||++++++|+.+...|...+... ..+.|++|||||+||.+.
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRND 122 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcC
Confidence 99999999999986698877664 347899999999999654
No 41
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.96 E-value=1.6e-27 Score=160.59 Aligned_cols=121 Identities=38% Similarity=0.713 Sum_probs=106.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
||+++|.+|+|||||++++.++.+ ..+.++.+.++....+.+++..+.+++|||||++.+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999998 5677888888887888888889999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++++.+++.+.. |.+.+.........|+++|+||+|+...++
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~ 123 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQ 123 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCcccc
Confidence 999999999988 988776543344578999999999965543
No 42
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.96 E-value=2.9e-27 Score=163.11 Aligned_cols=128 Identities=55% Similarity=0.912 Sum_probs=110.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
+..+||+++|++|+|||||++++.+..+ ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+++++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 3579999999999999999999999988 456788887777777888888889999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+|||++++++++.+.. |++.+... ....|++||+||+|+...+.+...+
T Consensus 84 lv~D~~~~~s~~~~~~-~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~ 132 (199)
T cd04110 84 VVYDVTNGESFVNVKR-WLQEIEQN--CDDVCKVLVGNKNDDPERKVVETED 132 (199)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccccCHHH
Confidence 9999999999999988 88887764 3567999999999997665544333
No 43
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=3.8e-27 Score=158.47 Aligned_cols=121 Identities=40% Similarity=0.754 Sum_probs=105.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
+..+||+++|++++|||||++++.++.+ ....++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 4679999999999999999999999888 456677777777778888999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCC
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKV 132 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~ 132 (154)
+|||++++++++.+.. |...+..... ..+.|+++|+||+|+.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 9999999999999887 8776655432 2467999999999996
No 44
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.95 E-value=2.3e-27 Score=158.15 Aligned_cols=124 Identities=47% Similarity=0.847 Sum_probs=107.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++++|||||+++++++++ ....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999998 566677777777777888888899999999999999988899999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|+++++++..+.. |...+... ...+.|+++|+||+|+...+.+..
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~ 125 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARAL-ASPNIVVILVGNKSDLADQREVTF 125 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcchhccCCH
Confidence 9999999999988 88777655 456789999999999976555433
No 45
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=2.2e-27 Score=162.74 Aligned_cols=124 Identities=44% Similarity=0.842 Sum_probs=107.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+||+++|++|+|||||++++.++.+. .+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999999883 4567777677766778888899999999999999988888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
+|+++.++++.+.. |...+... ...+.|+++|+||+|+..++.+..
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~ 126 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEY-AQEDVVIMLLGNKADMSGERVVKR 126 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEEcccchhccccCH
Confidence 99999999999988 88888776 345789999999999976554443
No 46
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.95 E-value=3.1e-27 Score=157.79 Aligned_cols=128 Identities=31% Similarity=0.519 Sum_probs=105.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|++|+|||||+++++++.+ ..+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999998887 4444555433 344556788888999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
||+++..+++.+.. |...+.......+.|+++|+||+|+..++.+...+.
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~ 130 (164)
T cd04145 81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEG 130 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHH
Confidence 99999999999988 777776654556789999999999976655444333
No 47
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.95 E-value=2.3e-27 Score=158.67 Aligned_cols=124 Identities=35% Similarity=0.592 Sum_probs=104.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 6999999999999999999998877 44556665444 356777888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|+++..+++.+.. |...+.......+.|+++|+||+|+...+.+..
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 126 (164)
T cd04175 81 SITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGK 126 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcH
Confidence 9999999999988 777776554456789999999999976554443
No 48
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.95 E-value=2e-27 Score=158.50 Aligned_cols=128 Identities=41% Similarity=0.724 Sum_probs=114.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
||+++|++++|||||+++|.++.+ ..+.++.+.+.....+..++..+.+.+||++|++.+......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999998 5666777788888899999999999999999999999888889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH 144 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~ 144 (154)
++++++++.+.. |.+.+.... ..+.|++|||||+|+.+.+++..++...
T Consensus 81 ~~~~~S~~~~~~-~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~ 129 (162)
T PF00071_consen 81 VTDEESFENLKK-WLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQE 129 (162)
T ss_dssp TTBHHHHHTHHH-HHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHH
T ss_pred cccccccccccc-ccccccccc-cccccceeeeccccccccccchhhHHHH
Confidence 999999999997 999998873 3568999999999998877776655543
No 49
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.95 E-value=2.5e-28 Score=155.62 Aligned_cols=132 Identities=55% Similarity=0.877 Sum_probs=120.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+|.+++|.+|+|||+|+.++-...| ..+..++|.++..+.+.+++..+++.|||++|++.|+.+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 4457889999999999999999999998 677788999999999999999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF 145 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (154)
+|||+++.+||.+... |++.++..+ +..|-++||||+|+...+.+..++.+.+
T Consensus 86 vVYDVTn~ESF~Nv~r-WLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~ 138 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKR-WLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAF 138 (198)
T ss_pred EEEECcchhhhHhHHH-HHHHHHhcC--ccccceecccCCCCccceeeehHHHHHH
Confidence 9999999999999999 999999874 4778999999999998888877666554
No 50
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.95 E-value=2.5e-27 Score=165.27 Aligned_cols=125 Identities=34% Similarity=0.590 Sum_probs=107.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+||+++|.+|+|||||+++|.++.+ ..+.++.+.++....+.+++ ..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 4899999999999999999999988 56678888888777777754 578999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCC--CCCcEEEEEeCCCCCCchhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTN--QDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
||++++++|+.+.. |...+...... .+.|+++|+||+|+.+.+++..
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~ 129 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKD 129 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCH
Confidence 99999999999987 98888776332 3568999999999976665543
No 51
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.95 E-value=2.4e-27 Score=165.47 Aligned_cols=119 Identities=23% Similarity=0.545 Sum_probs=104.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
++||+++|.+|+|||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+++.+++.+|++++|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 37999999999999999999999998 466788776654 5677889999999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
||++++++|+.+...|...+... ..+.|++|||||+||.+.
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~ 120 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTD 120 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccc
Confidence 99999999999977798877654 457899999999999653
No 52
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=3.2e-27 Score=164.26 Aligned_cols=126 Identities=43% Similarity=0.775 Sum_probs=107.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999988 445677777777777766 4668899999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|||++++++++.+.. |...+.........|++||+||+|+...+.+..
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~ 129 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTR 129 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCH
Confidence 999999999999988 888777654445678999999999987655543
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.95 E-value=5.9e-27 Score=157.30 Aligned_cols=117 Identities=36% Similarity=0.659 Sum_probs=103.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|||||||+++++.+.+ ..+.++.+.+.....+..++..+.+.+|||+|++.+......+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 4899999999999999999998887 556777777777666777888899999999999999888888999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|++++++++.+.. |...+..... +.|+++|+||+|+..
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~--~~piiiv~nK~Dl~~ 118 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVCG--NIPIVLCGNKVDIKD 118 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhCC--CCcEEEEEEchhccc
Confidence 9999999999987 9888887633 799999999999973
No 54
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.95 E-value=5.2e-27 Score=160.40 Aligned_cols=124 Identities=53% Similarity=0.871 Sum_probs=108.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++.++.+. .+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 48999999999999999999999984 47788887777778888888899999999999999989999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++++++.+.. |+..+... .....|+++|+||+|+...+.+..
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~ 125 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRY-ARENVIKVIVANKSDLVNNKVVDS 125 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECCCCcccccCCH
Confidence 9999999999999 98888775 344589999999999986655543
No 55
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.95 E-value=3.9e-27 Score=157.44 Aligned_cols=124 Identities=34% Similarity=0.584 Sum_probs=103.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++.+..+. .+.++.+ +........++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 48999999999999999999998883 3444444 334456677888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++++++.+.. |...+.......+.|+++|+||+|+.+.+.+..
T Consensus 80 d~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~ 125 (164)
T smart00173 80 SITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVST 125 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcH
Confidence 9999999999988 777766654555789999999999976655443
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.95 E-value=6.2e-27 Score=156.11 Aligned_cols=125 Identities=34% Similarity=0.657 Sum_probs=106.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
+||+++|.+++|||||++++.++.+ ..+.++.+.++....+.+. +..+.+++|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 4899999999999999999999888 5566777777766666666 778899999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
|||++++++++.+.. |...+... ..+.|+++|+||+|+..++.+..++
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~ 128 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEE 128 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEEChhcccccCCCHHH
Confidence 999999999999888 88887654 3578999999999997765554433
No 57
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.95 E-value=1.2e-26 Score=154.46 Aligned_cols=118 Identities=33% Similarity=0.644 Sum_probs=101.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++.++.+ ..+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 7999999999999999999999888 45556655443 456677888889999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|+++..+++.+.. |...+.......+.|+++|+||+|+..
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 81 AINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc
Confidence 9999999999887 777766654556789999999999975
No 58
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.95 E-value=7.5e-27 Score=158.96 Aligned_cols=116 Identities=28% Similarity=0.637 Sum_probs=103.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|..|+|||||++++..+.+ ..+.|+.+.++....+..++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 4899999999999999999999998 557888888888788888999999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
|++++.+++.+.. |.+.+... .....| ++|+||+|+.
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~-~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGF-NKTAIP-ILVGTKYDLF 117 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHh-CCCCCE-EEEEEchhcc
Confidence 9999999999988 98888765 234456 6889999995
No 59
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.95 E-value=7.3e-27 Score=165.67 Aligned_cols=130 Identities=25% Similarity=0.445 Sum_probs=107.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||+++++++.+. .+.++.+ ++....+.+++..+.+.+|||+|++.+..+...++..+|++++||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999884 5556665 555667788899999999999999999888888889999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhc--------CCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYS--------TNQDCIKLLVGNKVDKVCPWRLFLSGFWHF 145 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (154)
|+++.++|+.+.. |.+.+.... ...+.|+++|+||+|+..++++..+++..+
T Consensus 80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~ 139 (247)
T cd04143 80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQL 139 (247)
T ss_pred eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHH
Confidence 9999999999988 776665431 234689999999999986666666555543
No 60
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.95 E-value=2.2e-26 Score=155.65 Aligned_cols=117 Identities=31% Similarity=0.572 Sum_probs=101.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||+.++..+.+ ..+.++.+..+ ...+..++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999988 56667765433 345567888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|++++++|+.+...|...+... ..+.|++||+||+|+.+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRD 119 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhcc
Confidence 9999999999976688877664 34789999999999964
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.95 E-value=1.8e-26 Score=154.60 Aligned_cols=124 Identities=27% Similarity=0.416 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||+++++++.+ ..+.++.+.++ ......+...+.+.+|||+|++.+..+...+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988 45556555433 445566778889999999999999988888899999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|+++.++++.+.. |...+..... ..+.|+++|+||+|+...+++..
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~ 128 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSS 128 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecH
Confidence 9999999999988 7766665422 25789999999999976555543
No 62
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.9e-26 Score=166.74 Aligned_cols=126 Identities=31% Similarity=0.541 Sum_probs=108.5
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-------------CeEEEEEEEeCCCccc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-------------GKKMKLAIWDTAGQER 73 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~ 73 (154)
.+....+||+++|..|+|||||++++.++.+ ..+.++.+.++....+.++ +..+.++||||+|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3455779999999999999999999999988 5667888888877766664 2568899999999999
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-----------CCCCcEEEEEeCCCCCCc
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-----------NQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~~~ivv~nK~Dl~~~ 134 (154)
++.++..++++++++|+|||+++..+++.+.. |++.+..... ..+.|++|||||+||..+
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999988 9988877532 125799999999999754
No 63
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=1.8e-26 Score=153.72 Aligned_cols=123 Identities=41% Similarity=0.716 Sum_probs=105.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++++|||||++++++.++ ..+.++.+.++....+..++..+.+++||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988 566777777777888888888889999999999999988899999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
|++++++++.+.. |...+... ...+.|+++++||+|+...++..
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~ 124 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDE-RGNDVIIVLVGNKTDLSDKRQVS 124 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHh-CCCCCEEEEEEEChhccccCccC
Confidence 9999999999887 87776654 33478999999999996554443
No 64
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=8.7e-27 Score=159.63 Aligned_cols=125 Identities=34% Similarity=0.604 Sum_probs=102.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
||+++|.+|+|||||+++|..+.+ ..+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999888 44556655443 3455677888899999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 94 VTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+++..+++.+.. |.+.+..... ..+.|+++|+||+|+.+.+.+...+
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~ 128 (190)
T cd04144 80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEE 128 (190)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHH
Confidence 999999999988 8777765422 2568999999999997665554433
No 65
>PLN03108 Rab family protein; Provisional
Probab=99.95 E-value=2.5e-26 Score=159.66 Aligned_cols=130 Identities=47% Similarity=0.809 Sum_probs=111.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
+..+||+++|++|+|||||++++.+.++ ..+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 3569999999999999999999999988 456677777777778888888899999999999999988889999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+|||++++++++.+.. |...+... .....|+++|+||+|+...+.+..++.
T Consensus 84 lv~D~~~~~s~~~l~~-~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~ 134 (210)
T PLN03108 84 LVYDITRRETFNHLAS-WLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEG 134 (210)
T ss_pred EEEECCcHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHH
Confidence 9999999999999888 88776654 345789999999999987665554443
No 66
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=2e-26 Score=157.26 Aligned_cols=118 Identities=31% Similarity=0.581 Sum_probs=99.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+||+++|++|+|||||++++.++.+ ..+.++.+..+.. .+... +..+.+.+|||||++.+...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 4899999999999999999999988 4555665555433 34454 6788999999999999999888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
||++++++|+.+...|...+... ..+.|+++|+||+|+...
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhC
Confidence 99999999999977688777654 357899999999999654
No 67
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.95 E-value=2.1e-26 Score=158.66 Aligned_cols=128 Identities=25% Similarity=0.344 Sum_probs=101.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYRG 84 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 84 (154)
+||+++|.+|+|||||++++.++++ ..+.|+.+.+.....+.+++..+.+.+|||||...+... ....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988 456677766666666778888899999999997544322 2334788
Q ss_pred ccEEEEEEECCCcchHHHHHHHHHHHHhhhc--CCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+|++++|||++++++++.+.. |.+.+.... ...+.|+++|+||+|+...+.+...++
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~ 139 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVL 139 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHH
Confidence 999999999999999999988 777666542 246789999999999976655544433
No 68
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.95 E-value=3.7e-26 Score=156.38 Aligned_cols=119 Identities=30% Similarity=0.504 Sum_probs=101.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
||+++|++|+|||||++++.++.+. .+.++.+..+. ..+..++..+.+.+|||+|++.+..++..+++++|++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 8999999999999999999999984 45666665543 455667888999999999999999998889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++++++|+.+...|...+... ..+.|+++|+||+|+.+.+.
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~ 121 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARN 121 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChh
Confidence 999999999876688888764 34789999999999976553
No 69
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.95 E-value=3.1e-26 Score=154.50 Aligned_cols=116 Identities=31% Similarity=0.603 Sum_probs=98.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
|+++|++|+|||||++++.++.+. .+.++.... ....+..++..+.+.+|||||++.+..++..+++.+|++++|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 589999999999999999999984 444555433 345567788889999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++++|+.+...|...+... ..+.|+++|+||+|+...
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLRED 117 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhC
Confidence 99999999977698888765 357899999999999653
No 70
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=3.3e-26 Score=152.75 Aligned_cols=124 Identities=44% Similarity=0.760 Sum_probs=108.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++++|||||+++++++++. ...++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 79999999999999999999999984 47788887787788888899999999999999998888888899999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++++++.... |...+... .....|+++++||+|+...+....
T Consensus 82 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~ 126 (163)
T cd01860 82 DITSEESFEKAKS-WVKELQRN-ASPNIIIALVGNKADLESKRQVST 126 (163)
T ss_pred ECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECccccccCcCCH
Confidence 9999999999888 88887766 346789999999999975544333
No 71
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=4.2e-26 Score=152.01 Aligned_cols=118 Identities=74% Similarity=1.192 Sum_probs=106.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++.+..+ ....++.+.++....+..++..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888 456777777777777777888899999999999999888888999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
|++++.+++.+.. |.+.+..+....+.|+++|+||+|+.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc
Confidence 9999999999888 99988887667789999999999997
No 72
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.95 E-value=2.2e-26 Score=160.49 Aligned_cols=114 Identities=37% Similarity=0.658 Sum_probs=96.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
+||+++|.+++|||||++++..+++....++.+..+....+ ..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 48999999999999999999999986667777765544333 46789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
++++++|+.+.. |...+... ...+.|++||+||+||.+
T Consensus 77 vt~~~Sf~~l~~-~~~~l~~~-~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 77 VSNVQSLEELED-RFLGLTDT-ANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred CCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccccc
Confidence 999999999988 55444443 345789999999999975
No 73
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.95 E-value=3.5e-26 Score=153.94 Aligned_cols=122 Identities=24% Similarity=0.317 Sum_probs=104.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
...+||+++|.+|+|||||+++++++.+. .+.|+.+..+....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 35799999999999999999999999884 5567777777777778888888999999999999988888889999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++|+|++++.+++.+.. |...+.. ..+.|+++|+||+|+.+.++
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~ 125 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQ 125 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEccccccccc
Confidence 99999999999998877 6665532 24689999999999975544
No 74
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.95 E-value=3.2e-26 Score=152.79 Aligned_cols=122 Identities=56% Similarity=0.980 Sum_probs=106.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++++|||||++++.+..+ ....++.+.++....+..++..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999887 555677777777777888888889999999999999988899999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
|++++.+++.+.. |...+..+ ...+.|+++|+||+|+...++.
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~-~~~~~pivvv~nK~D~~~~~~~ 123 (164)
T smart00175 81 DITNRESFENLKN-WLKELREY-ADPNVVIMLVGNKSDLEDQRQV 123 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcccccCC
Confidence 9999999999888 98888776 3358899999999999764433
No 75
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.94 E-value=5.8e-26 Score=153.30 Aligned_cols=117 Identities=32% Similarity=0.562 Sum_probs=99.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+|++++|++|+|||||++++.++.+. .+.++. .+.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 58999999999999999999998884 444443 4444556778888899999999999999999988999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|++++.+|+.+...|...+... ..+.|+++|+||+|+..
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRT 118 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhcc
Confidence 9999999999876688777653 34689999999999964
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.94 E-value=3.5e-26 Score=152.82 Aligned_cols=123 Identities=30% Similarity=0.562 Sum_probs=103.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC--CC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
+||+++|++|+|||||++++..+ .+ ..+.++.+.++....+..+ +..+.+.+|||||++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 45 5667778777766666664 56789999999999999888889999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
+|+|++++++++.+.. |.+.+... ..+.|+++|+||+|+...+++..
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~ 127 (164)
T cd04101 81 LVYDVSNKASFENCSR-WVNKVRTA--SKHMPGVLVGNKMDLADKAEVTD 127 (164)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccCCCH
Confidence 9999999999998877 88887765 25689999999999976655433
No 77
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.94 E-value=5.9e-26 Score=155.70 Aligned_cols=117 Identities=34% Similarity=0.684 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+||+++|.+|+|||||++++.++.+. .+.++.+.++....+.+++..+.+.+||++|++.+..+...+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 48999999999999999999999884 4777888778778888999999999999999999988888889999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
||+++..+++.+.. |.+.+... ..+.|+++|+||+|+..
T Consensus 81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccc
Confidence 99999999999877 88887764 34689999999999864
No 78
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.94 E-value=1.1e-25 Score=151.74 Aligned_cols=118 Identities=33% Similarity=0.595 Sum_probs=100.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++..+.+. .+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 48999999999999999999999884 4455544 333445677888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|++++++|+.+...|.+.+... ..+.|+++|+||+|+.+.
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDD 119 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcC
Confidence 9999999999987788888754 567899999999999654
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.94 E-value=7e-26 Score=152.31 Aligned_cols=122 Identities=39% Similarity=0.733 Sum_probs=103.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++++|||||++++.+..+ ....++.+.++....+..++..+.+.+||+||++.+...+..+++++|++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 4899999999999999999999987 455566676777777788888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCCCchh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|++++.+++.... |.+.+..... ..+.|+++|+||+|+..++.
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 126 (172)
T cd01862 81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ 126 (172)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccc
Confidence 9999999988876 7766554433 23689999999999985443
No 80
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.94 E-value=1e-25 Score=149.87 Aligned_cols=124 Identities=40% Similarity=0.742 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||+++++++.+ ....++.+.+.....+...+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999888 344455555566666777778889999999999999988888899999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|+++.++++.+.. |.+.+.... ..+.|+++|+||+|+..++++..
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~ 125 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMR-GNNISLVIVGNKIDLERQRVVSK 125 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCH
Confidence 9999999999888 888877663 34789999999999986655433
No 81
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.8e-25 Score=150.02 Aligned_cols=126 Identities=50% Similarity=0.903 Sum_probs=107.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+|++++|++|+|||||++++..+.+ ....++.+.+.....+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999998877 455677776777777788888899999999999999888888999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
+|+|+++..+++.+.. |...+... ...+.|+++|+||+|+.+.+++.
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~ 131 (169)
T cd04114 85 LTYDITCEESFRCLPE-WLREIEQY-ANNKVITILVGNKIDLAERREVS 131 (169)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccC
Confidence 9999999999998887 88877665 44568999999999997665543
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.94 E-value=1.6e-25 Score=150.42 Aligned_cols=124 Identities=31% Similarity=0.557 Sum_probs=104.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||++++.++.+ ..+.++.+.. ....+.+++..+.+++|||||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6999999999999999999999888 4455555533 3456677888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++++++.... |...+.......+.|+++++||.|+...+.+..
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~ 126 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSR 126 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCH
Confidence 9999999999988 887776654556789999999999976655433
No 83
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.94 E-value=1.1e-26 Score=149.75 Aligned_cols=142 Identities=34% Similarity=0.600 Sum_probs=122.9
Q ss_pred CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (154)
Q Consensus 1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (154)
|+...........+|++++|..=+|||+|+-|+..++| .....+....+..+.+.+.+....++||||.|++.|..+-+
T Consensus 1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP 80 (218)
T KOG0088|consen 1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP 80 (218)
T ss_pred CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence 44455555566789999999999999999999999999 55555666677888888888999999999999999999999
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH 144 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~ 144 (154)
-+++.++++++|||++++++|+.... |...++.. ....+-+++||||+||..++.+...+...
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKn-WV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~ 143 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKN-WVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEA 143 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHH-HHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHH
Confidence 99999999999999999999999999 99999886 45567899999999999999886655443
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.94 E-value=8.1e-26 Score=151.36 Aligned_cols=123 Identities=30% Similarity=0.495 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~~v~v~ 92 (154)
||+++|++|+|||||+++++.+.+ ..+.++.... ....+.+++..+.+.+||+||++. .......+++.+|++++|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887 3444544333 345567788889999999999885 3445667889999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++.+++.+.. |...+..... ..+.|+++|+||+|+...+.+..
T Consensus 80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~ 126 (165)
T cd04146 80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVST 126 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCH
Confidence 9999999999988 8877776533 45789999999999966554443
No 85
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.94 E-value=1.3e-25 Score=154.70 Aligned_cols=112 Identities=32% Similarity=0.596 Sum_probs=102.0
Q ss_pred EcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCc
Q 031704 19 IGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR 97 (154)
Q Consensus 19 ~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 97 (154)
+|.+++|||||+++++.+.+ ..+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888 45778888888888888888999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 98 DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.+++.+.. |.+.+...+ .+.|++|||||+|+..
T Consensus 81 ~S~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~ 113 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDVKD 113 (200)
T ss_pred HHHHHHHH-HHHHHHHhC--CCCCEEEEEECccccc
Confidence 99999988 999888763 5789999999999964
No 86
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.94 E-value=2.6e-25 Score=148.20 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=97.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
+||+++|++|+|||||+.+++.+.+....++.+..+ ...+.+++..+.+.+|||+|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 489999999999999999999988844333334344 46678888889999999999965 245678999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC--chhhhhhhh
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC--PWRLFLSGF 142 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~--~~~~~~~~~ 142 (154)
++++++|+.+.. |.+.+.......+.|+++||||+|+.. ++++..++.
T Consensus 75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~ 124 (158)
T cd04103 75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARA 124 (158)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHH
Confidence 999999999988 888887764446789999999999853 455554443
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.94 E-value=2.3e-25 Score=155.89 Aligned_cols=125 Identities=25% Similarity=0.382 Sum_probs=100.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIM 90 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~v~ 90 (154)
+||+++|++|+|||||++++..+.+. .+.++.+.+.....+.+++..+.+.+||++|++. .....+++ .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988873 3444444356667778888889999999999982 22344566 8999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
|||++++.+++.+.+ |...+.......+.|+++|+||+|+...+++...+
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~ 128 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQE 128 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHH
Confidence 999999999999888 88777765444678999999999997766655443
No 88
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.93 E-value=1.4e-25 Score=151.84 Aligned_cols=119 Identities=27% Similarity=0.487 Sum_probs=96.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|++|+|||||++++..+++..+.|+.+.... .+.. ..+.+.+||+||++.++..+..+++++|++++
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3458999999999999999999988877666677765543 2333 45789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+|++++.+++.....|...+... ...+.|++||+||+|+.+.
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPDA 129 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCcccC
Confidence 999999999998888444444332 3356899999999999654
No 89
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.93 E-value=1.4e-25 Score=150.91 Aligned_cols=117 Identities=29% Similarity=0.493 Sum_probs=95.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
..+||+++|.+++|||||++++..+.+..+.|+.+.+.. .+. ...+.+.+|||+|++.++..+..+++++|++++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 458999999999999999999998877666677775543 222 2457899999999999999899999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+|++++.+++.....|.+.+... ...+.|++||+||+|+.+
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDR-EMRDALLLVFANKQDLPD 124 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCH-hhcCCcEEEEEECcCCcc
Confidence 99999999988877444444332 335689999999999964
No 90
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=9e-25 Score=146.77 Aligned_cols=119 Identities=34% Similarity=0.602 Sum_probs=99.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||+++|+++.+ ..+.++.. .........++..+.+.+||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 5899999999999999999999988 44445444 333445567788899999999999988888888889999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|++++.++......|...+... ..+.|+++|+||+|+....
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhch
Confidence 9999999998877788877765 3479999999999997655
No 91
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.93 E-value=7.2e-25 Score=144.85 Aligned_cols=127 Identities=53% Similarity=0.912 Sum_probs=108.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++++|||||++++.+..+ ....++.+.++....+..++..+.+.+||+||+..+......+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 4899999999999999999999998 445778888888888888888899999999999998888899999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|++++++++.+.. |...+... .....|+++++||+|+..+.....++.
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~ 128 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEA 128 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEEcccccccccccHHHH
Confidence 9999999999888 88887776 335789999999999974444433333
No 92
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.93 E-value=2.2e-25 Score=148.67 Aligned_cols=116 Identities=26% Similarity=0.511 Sum_probs=94.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
+||+++|.+++|||||++++..+.+..+.|+.+.... .+.. ..+.+.+||+||++.+...+..+++++|++++|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 4899999999999999999988888666777765443 2322 45789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++++.+++.+...|.+.+... ...+.|++|++||+|+.+.
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 77 SNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCCC
Confidence 999999998888444444332 3346899999999999654
No 93
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.93 E-value=2.9e-25 Score=152.20 Aligned_cols=132 Identities=32% Similarity=0.493 Sum_probs=114.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+|++++|.+|+|||+|+.+++++.+ ..+.|+.+ +.+.+.+.+++..+.+.|+||+|++++..+...+++++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999 55566666 6667888899999999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHF 145 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~ 145 (154)
||+++++.||+.+.. +.+.+.+.......|+++||||+|+.+.+.+..++...+
T Consensus 81 Vysitd~~SF~~~~~-l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~l 134 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQ-LREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKAL 134 (196)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHH
Confidence 999999999999999 555554444566789999999999999888888775544
No 94
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.93 E-value=1e-24 Score=145.39 Aligned_cols=119 Identities=36% Similarity=0.618 Sum_probs=99.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||+++++...+ ..+.++.+.. .......++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 4899999999999999999999887 4444444433 3455667888899999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|++++.+++.... |...+.......+.|+++|+||+|+...
T Consensus 80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 80 SITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 9999999999988 6655555434567899999999999763
No 95
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.93 E-value=9.2e-25 Score=150.53 Aligned_cols=117 Identities=28% Similarity=0.484 Sum_probs=99.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
||+++|.+|+|||||+++++++.+.. +.++.. +.....+.+.+..+.+++||+||+..+..++..+++.+|++++|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999998843 344443 4455567778888899999999999998888888999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
++++.+++.+.. |...+.......+.|+++|+||+|+..
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 80 VDDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 999999999988 877777664556799999999999965
No 96
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.93 E-value=5.6e-25 Score=149.87 Aligned_cols=120 Identities=28% Similarity=0.458 Sum_probs=99.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|.+|+|||||++++..+.+....++.+.+.....+.. ++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999888656677766555544444 34678999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+|+++..+++.+.. |...+.......+.|+++|+||+|+..
T Consensus 83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 99999988888877 666555543456789999999999964
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.93 E-value=1.5e-24 Score=146.38 Aligned_cols=118 Identities=32% Similarity=0.642 Sum_probs=99.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
.||+++|++|+|||||++++.++.+. .+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999999884 4556655444 345677888899999999999999888888899999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+++.++++.+...|...+... ..+.|+++|+||+|+...
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND 120 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccC
Confidence 9999999999877688877654 347899999999998643
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.93 E-value=4.8e-25 Score=149.99 Aligned_cols=120 Identities=27% Similarity=0.478 Sum_probs=96.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|.+++|||||++++..+.+..+.|+.+.+.. .+. ...+.+++||+||++.++.++..+++++|++++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 3458999999999999999999998888666677775543 233 345789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+|+++.++++.....+...+... ...+.|++||+||+|+.+..
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~-~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCH-hhCCCCEEEEEECCCCCCCC
Confidence 999999999988877333333221 23578999999999997553
No 99
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=9.4e-25 Score=146.47 Aligned_cols=120 Identities=29% Similarity=0.403 Sum_probs=97.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
+|++++|.+|+|||||++++.++.+....+...... .....+++..+.+.+|||||.+.+...+..+++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 389999999999999999999999854444433222 2334556677899999999998887777777899999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++++.+++.+...|.+.++... .+.|+++|+||+|+.+.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~ 120 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSS 120 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccc
Confidence 9999999998766888887652 3789999999999976543
No 100
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=8.9e-26 Score=146.17 Aligned_cols=136 Identities=43% Similarity=0.775 Sum_probs=118.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
..+.++++++|.+-+|||||+.++..++++ -.-|+.|.++..+.+.+ ++..+++++|||+|++.|+.+...+++++-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 347799999999999999999999999994 44588888877666655 5778999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhhhhhhhhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRLFLSGFWHFL 146 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~ 146 (154)
+++|||++++++|+.... |......+.. ....-+.+||+|+||...+++..+|..++-
T Consensus 85 vllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklA 143 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLA 143 (213)
T ss_pred eEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHH
Confidence 999999999999999999 9988777655 344577899999999999999888877653
No 101
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.93 E-value=1e-24 Score=147.27 Aligned_cols=119 Identities=26% Similarity=0.439 Sum_probs=95.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|++|+|||||++++.+..+..+.++.+.. ...+.++ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 87 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW 87 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45589999999999999999999988766666766633 3344444 4788999999999988888889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+|++++.+++.... |...+.......+.|+++|+||+|+...
T Consensus 88 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 88 VVDSSDRLRLDDCKR-ELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred EEECCCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcccccC
Confidence 999999999988877 5554433223457899999999999654
No 102
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=2.7e-24 Score=147.76 Aligned_cols=117 Identities=23% Similarity=0.470 Sum_probs=91.0
Q ss_pred eEEEEEEcCCCCCHHHHHH-HHhcCCC------CCCCCccee-e-eEEE-------EEEECCeEEEEEEEeCCCcccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLL-SFTSDTF------EELSPTIGV-D-FKIK-------HVALGGKKMKLAIWDTAGQERFRT 76 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~-~l~~~~~------~~~~~~~~~-~-~~~~-------~~~~~~~~~~~~i~D~~g~~~~~~ 76 (154)
.+||+++|..|+|||||+. ++.++.+ ..+.|+.+. + +... ...+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999996 5654432 344566642 2 2211 125678899999999999875 2
Q ss_pred cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
....+++++|++++|||++++.+|+.+...|.+.+.... .+.|+++||||+||.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRY 134 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccc
Confidence 455678999999999999999999999866988887653 4689999999999964
No 103
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4e-25 Score=140.29 Aligned_cols=137 Identities=45% Similarity=0.816 Sum_probs=125.2
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
-+.++.+|.+++|.-|+|||||++.+..+++ .+-..+.|.++.++.+.+.+.++++++|||.|+++|+...+.+++.+.
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 4567899999999999999999999999999 666678899999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFL 146 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~ 146 (154)
+.++|||++.+.+...+.. |+...+.. .+++.-+++++||.||.+.+.+..+|...|.
T Consensus 86 galmvyditrrstynhlss-wl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fa 143 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFA 143 (215)
T ss_pred ceeEEEEehhhhhhhhHHH-HHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHH
Confidence 9999999999999999999 99888876 7788899999999999999999887776553
No 104
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.92 E-value=8.6e-25 Score=146.53 Aligned_cols=115 Identities=24% Similarity=0.391 Sum_probs=94.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
|+++|++|+|||||++++.++.+ ..+.|+.+... ..++...+.+.+||++|++.++.++..+++++|++++|+|+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999999877 55567766432 23445568899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+++.++..... |...+... ..+.|+++|+||+|+..++.+
T Consensus 78 t~~~s~~~~~~-~l~~~~~~--~~~~piilv~NK~Dl~~~~~~ 117 (164)
T cd04162 78 ADSERLPLARQ-ELHQLLQH--PPDLPLVVLANKQDLPAARSV 117 (164)
T ss_pred CCHHHHHHHHH-HHHHHHhC--CCCCcEEEEEeCcCCcCCCCH
Confidence 99999988877 66555433 257899999999999766544
No 105
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.92 E-value=1.2e-24 Score=148.10 Aligned_cols=118 Identities=26% Similarity=0.494 Sum_probs=95.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
..+||+++|++++|||||++++..+.+..+.|+.+.++. .+.. ..+.+.+|||+|++.++..+..+++++|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 458999999999999999999988888656677665443 2333 457899999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+|++++++++.....|.+.+... ...+.|++||+||.|+.+.
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCC
Confidence 99999999998877444444332 2346899999999999653
No 106
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.92 E-value=2.7e-24 Score=145.85 Aligned_cols=123 Identities=33% Similarity=0.459 Sum_probs=99.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
.||+++|.+|+|||||++++.+..+. .+.++.+..+ ...+..++..+.+.+||+||++++...+..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 58999999999999999999998883 3455554333 455667777888999999999999888888899999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
|+++..+++.+.. |...+.......+.|+++|+||+|+...+...
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~ 125 (180)
T cd04137 81 SVTSRKSFEVVKV-IYDKILDMLGKESVPIVLVGNKSDLHTQRQVS 125 (180)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEchhhhhcCccC
Confidence 9999999999988 54444444355678999999999997655443
No 107
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.92 E-value=2e-24 Score=145.33 Aligned_cols=115 Identities=29% Similarity=0.534 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
||+++|.+++|||||++++.+..+..+.++.+.... .+.. ..+.+.+|||||+..+...+..+++++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 689999999999999999999877666677665443 2322 457899999999999998899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++.+++.+.. |...+.......+.|++||+||+|+.+.
T Consensus 77 s~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 77 SHRDRVSEAHS-ELAKLLTEKELRDALLLIFANKQDVAGA 115 (169)
T ss_pred CcHHHHHHHHH-HHHHHhcChhhCCCCEEEEEeCcCcccC
Confidence 99999999888 5555543323446799999999999643
No 108
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.92 E-value=3.5e-24 Score=136.19 Aligned_cols=114 Identities=30% Similarity=0.613 Sum_probs=90.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFE---ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
||+|+|++|+|||||+++|.+..+. ...+..+.+..............+.+||++|++.+...+...+.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998875 3334445556666667777777799999999998888777779999999999
Q ss_pred EECCCcchHHHHHHH--HHHHHhhhcCCCCCcEEEEEeCCC
Q 031704 92 YDVTRRDTFTNLADI--WAKEIDLYSTNQDCIKLLVGNKVD 130 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~~~ivv~nK~D 130 (154)
||++++.+++.+.++ |+..+... ..+.|++||+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999998763 55555543 45599999999998
No 109
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.92 E-value=4.4e-24 Score=141.70 Aligned_cols=123 Identities=36% Similarity=0.600 Sum_probs=100.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
||+++|++|+|||||++++++..+ ....++.. +.....+..++..+.+.+||+||++.+......+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877 44445544 5555667777778899999999999988888889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
++++++++.+.. |...+.........|+++|+||+|+...+....
T Consensus 80 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 124 (160)
T cd00876 80 ITDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSK 124 (160)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecH
Confidence 999999999988 555555543446789999999999987554433
No 110
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.92 E-value=3e-24 Score=144.24 Aligned_cols=116 Identities=26% Similarity=0.434 Sum_probs=94.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
+|+++|+++||||||++++.++....+.|+.+.+ ...+.. ..+.+.+||+||++.++.++..+++++|++++|+|+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999977335666776654 233333 357889999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++..+++.+.. |+..+.......+.|+++|+||+|+.+.+
T Consensus 77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 116 (167)
T cd04161 77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNAL 116 (167)
T ss_pred CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence 99999998888 66666544344578999999999997655
No 111
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.6e-26 Score=148.06 Aligned_cols=134 Identities=36% Similarity=0.716 Sum_probs=116.9
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC---------CeEEEEEEEeCCCcccccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG---------GKKMKLAIWDTAGQERFRTLT 78 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~~ 78 (154)
..++.+|++.+|.+|+||||++.++..+++ ..-..+.|+++..+.+-++ +..+++++|||+|+++|+.+.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 345678999999999999999999999999 6777888888776665442 357899999999999999999
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW 143 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~ 143 (154)
..+++.+-+++++||+++..+|.+.+. |..+++.+.-..+..++++|||+||.+.+.+..++..
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~ 148 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAA 148 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHH
Confidence 999999999999999999999999999 9999988766667779999999999999988665544
No 112
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.9e-23 Score=145.60 Aligned_cols=121 Identities=36% Similarity=0.593 Sum_probs=105.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+|++++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||+|++.+...+..++++++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 34558999999999999999999888887 67778888888777777788899999999999999988888889999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
++|||+++..++..+.. |...+... ..+.|+++++||+|+.+
T Consensus 86 i~v~d~~~~~s~~~~~~-~~~~i~~~--~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPN-WHRDIVRV--CENIPIVLVGNKVDVKD 127 (215)
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccCcc
Confidence 99999999999999987 88887765 24689999999999864
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.92 E-value=4.9e-24 Score=141.85 Aligned_cols=115 Identities=27% Similarity=0.444 Sum_probs=91.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
||+++|++++|||||++++..+.+....++.+.+.. .+. ...+.+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 689999999999999999988877555566554433 222 2457899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++.++......|...+... ...+.|+++|+||+|+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGA 115 (158)
T ss_pred CCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCC
Confidence 99888877666454444432 3357899999999999754
No 114
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.91 E-value=2.8e-23 Score=141.93 Aligned_cols=117 Identities=35% Similarity=0.605 Sum_probs=96.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
.|++++|++|+|||||++++..+.+ ..+.++....+ ...+.+++..+.+.+||++|++.+.......++++|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 6999999999999999999998777 34444444333 345667788889999999999888877777789999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|+++.++++.+...|...+... ..+.|+++|+||+|+.+
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQ 119 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhh
Confidence 9999999999987699888764 34699999999999854
No 115
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=6.8e-26 Score=142.36 Aligned_cols=125 Identities=38% Similarity=0.718 Sum_probs=113.2
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 17 LLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 17 ~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
+++|.+++|||||+-++..+.+ .....+.|+++..+.+..++.++++++|||.|+++|++....+++.+|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 3689999999999999988888 45678889999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhh
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFW 143 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~ 143 (154)
++..||++... |+.++.++ .+....+.++|||||+.+++.+..++..
T Consensus 81 ankasfdn~~~-wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~ 127 (192)
T KOG0083|consen 81 ANKASFDNCQA-WLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGE 127 (192)
T ss_pred ccchhHHHHHH-HHHHHHHH-HHhhHhHhhhccccccchhhccccchHH
Confidence 99999999999 99999998 6777889999999999888877554443
No 116
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.91 E-value=2.7e-24 Score=145.22 Aligned_cols=120 Identities=33% Similarity=0.556 Sum_probs=107.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
..+|++++|..++|||+|+..+..+.| ..+.|+... .+...+.+ +++.+++.+|||.|+++|..+++..++++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFd-nys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFD-NYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEc-cceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 568999999999999999999999999 566777764 44556677 499999999999999999998888899999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+||++.++.+++++...|+.+++.++ ++.|+++||+|.||.++
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDD 124 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhC
Confidence 99999999999999999999999985 88899999999999854
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.91 E-value=9.6e-24 Score=140.47 Aligned_cols=115 Identities=28% Similarity=0.448 Sum_probs=92.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
||+++|++|+|||||++++.++.+....++.+.+.. .... +..+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999988666676664432 3333 2457899999999999888888899999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+++.++..... |...+.......+.|+++|+||+|+..
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 78 SDEARLDESQK-ELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred CcHHHHHHHHH-HHHHHHhchhhcCCCEEEEEECccccc
Confidence 99988888877 444443322335789999999999964
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.91 E-value=1.4e-23 Score=141.94 Aligned_cols=116 Identities=27% Similarity=0.488 Sum_probs=94.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
.+||+++|++|+|||||++++..+.+....++.+.+.. .+.. ..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 57999999999999999999999888666777765543 2333 3578999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|+++++++......|.+.+... ...+.|+++++||+|+..
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKG 130 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCC
Confidence 9999988887777344444332 335689999999999965
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=1.6e-23 Score=139.20 Aligned_cols=116 Identities=27% Similarity=0.476 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
||+++|.+|+|||||++++.++......++.+.+... +.+ ..+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 6899999999999999999999876666666655433 333 246899999999999998899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++++++..... |...+.......+.|+++|+||+|+....
T Consensus 77 ~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 116 (158)
T cd00878 77 SDRERIEEAKE-ELHKLLNEEELKGVPLLIFANKQDLPGAL 116 (158)
T ss_pred CCHHHHHHHHH-HHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence 99999998877 55444443345678999999999997644
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.90 E-value=3.1e-23 Score=138.14 Aligned_cols=115 Identities=23% Similarity=0.408 Sum_probs=91.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+|+++|++++|||||++++.+..+ ..+.|+.+.+.. .+. ...+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 455666664332 222 34578999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhc--CCCCCcEEEEEeCCCCCCc
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~Dl~~~ 134 (154)
|++++.++..... |...+.... ...+.|+++|+||+|+..+
T Consensus 77 D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 77 DSSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred eCCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 9999998887777 655554321 2357899999999999754
No 121
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=4.2e-23 Score=140.75 Aligned_cols=118 Identities=24% Similarity=0.388 Sum_probs=92.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+.+||+++|.+|+|||||++++.++.+..+.++.+.+. ..+..+ .+.+.+||+||++.++..+..+++.+|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 455899999999999999999999987755555554432 233333 4678999999999988889999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|+|+++++++..... +...+.......+.|+++|+||+|+..
T Consensus 91 vvD~~~~~~~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 91 LVDAYDKERFAESKR-ELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred EEECCcHHHHHHHHH-HHHHHHcChhhcCCCEEEEEeCccccC
Confidence 999999998888777 443333222345789999999999964
No 122
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.90 E-value=6.5e-23 Score=138.80 Aligned_cols=119 Identities=31% Similarity=0.487 Sum_probs=99.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+.+||+++|+.+|||||+++++..+......|+.|.+. ..+... .+.+.+||.+|+..++..|..+++.+|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~--~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI--EEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE--EEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc--ceeeeC--cEEEEEEeccccccccccceeeccccceeEE
Confidence 577999999999999999999999887766777777544 344443 4678999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+|.++.+.+......+.+.+... ...+.|+++++||+|+.+.
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPDA 130 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTTS
T ss_pred EEecccceeecccccchhhhcchh-hcccceEEEEeccccccCc
Confidence 999999999988888555555443 4568899999999999754
No 123
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.90 E-value=1.3e-22 Score=138.68 Aligned_cols=117 Identities=24% Similarity=0.395 Sum_probs=93.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+..||+++|++|+|||||++++.++.+..+.++.+.+. ..+.+++ +.+.+||+||++.+...+..+++++|++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 46899999999999999999999988765556655432 3444443 5788999999998888888889999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+|+++..+++.... |...+.......+.|+++++||+|+.+
T Consensus 94 ~D~~~~~s~~~~~~-~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 94 VDAADPERFQESKE-ELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred EECCcHHHHHHHHH-HHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 99999988887776 554444332445689999999999964
No 124
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.89 E-value=6.2e-22 Score=130.41 Aligned_cols=121 Identities=31% Similarity=0.480 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|.+|+|||||++++.+..+ ..+.++.+.+.....+..++..+.+.+||+||+..+...+...++++++++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 7999999999999999999999887 455567776776666777777789999999999998888888888999999999
Q ss_pred ECCCc-chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 93 DVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 93 d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|.... .++......|...+...... +.|+++++||+|+..+.
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~ 124 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK 124 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch
Confidence 98877 66666553466666665333 78999999999997653
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.89 E-value=1.6e-22 Score=135.41 Aligned_cols=115 Identities=27% Similarity=0.469 Sum_probs=88.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
+|+++|++|+|||||++++.+... ..+.++.+.... .+.++ ...+.+|||||++.+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 122344443332 33333 4688999999999999888899999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++|+|+++.++++.... |...+.......+.|+++++||+|+...
T Consensus 77 ~v~vvd~~~~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 77 IIYVIDSTDRERFEESKS-ALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred EEEEEECchHHHHHHHHH-HHHHHHhChhhcCCCEEEEEEccccccC
Confidence 999999999888888777 5554444334457899999999999654
No 126
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.89 E-value=3.9e-22 Score=139.18 Aligned_cols=122 Identities=43% Similarity=0.721 Sum_probs=103.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
+||+++|++|+|||||++++....+. .+.++.+..+........+..+.+.+|||+|+++++..+..+++.++++++|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 89999999999999999999999994 45566665555555555555788999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|.++..++......|.+.+... .....|+++|+||+|+..+..
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~ 128 (219)
T COG1100 86 DSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQS 128 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchh
Confidence 9999777777777799998876 235689999999999987753
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.89 E-value=5.3e-22 Score=131.19 Aligned_cols=115 Identities=29% Similarity=0.503 Sum_probs=91.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
|+++|++|+|||||++++.+.++ ..+.++.+.... .+..+ .+.+.+||+||++.+...+..+++.+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 78999999999999999999988 556666665443 23333 37899999999999999899999999999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++..++..... |...+.......+.|+++|+||+|+....
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 117 (159)
T cd04159 78 ADRTALEAAKN-ELHDLLEKPSLEGIPLLVLGNKNDLPGAL 117 (159)
T ss_pred CCHHHHHHHHH-HHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence 99888887776 44444332234578999999999997654
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.88 E-value=5.1e-22 Score=128.66 Aligned_cols=120 Identities=23% Similarity=0.384 Sum_probs=101.6
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
+..++.++|+++|..||||||++++|.+.......|+.+....+..+ +.+.+++||..|+..+++.|..|+...|+
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 33556899999999999999999999999887778888855554444 56789999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+|+|+|.+++.++++....+...+... .-...|++|++||.|+.
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~ee-rlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEE-RLAGAPLLVLANKQDLP 130 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhh-hhcCCceEEEEecCcCc
Confidence 999999999999988877555555533 44567999999999996
No 129
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.88 E-value=4.4e-24 Score=140.35 Aligned_cols=133 Identities=29% Similarity=0.577 Sum_probs=118.7
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
+...+..+|++++|..++||||++++++.+-| ..+..+.+.++......++++.+.+.+||++|++++..+...+++.+
T Consensus 14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga 93 (246)
T KOG4252|consen 14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA 93 (246)
T ss_pred chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence 44567789999999999999999999999888 67788888888888888888888899999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
.+.++||+-+|+.+|+...+ |.+.+... ...+|.++|-||+||.+..++...+.
T Consensus 94 qa~vLVFSTTDr~SFea~~~-w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~ev 147 (246)
T KOG4252|consen 94 QASVLVFSTTDRYSFEATLE-WYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEV 147 (246)
T ss_pred cceEEEEecccHHHHHHHHH-HHHHHHHH--hccCCeEEeeccchhhHhhhcchHHH
Confidence 99999999999999999999 99998874 57889999999999988777655443
No 130
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.87 E-value=1.4e-21 Score=132.27 Aligned_cols=114 Identities=25% Similarity=0.288 Sum_probs=84.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--------CCCCC------cceeeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF--------EELSP------TIGVDFKIKHVAL-----GGKKMKLAIWDTAGQERFR 75 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~--------~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~~~ 75 (154)
+|+++|.+++|||||+++|++..- ..+.+ +.+.+........ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999987431 11111 2233443333222 5677899999999999999
Q ss_pred ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
..+..+++.+|++++|+|+++..+...... |.... ..+.|+++|+||+|+...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSA 134 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcC
Confidence 888889999999999999998776665554 43322 236789999999999643
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.87 E-value=1.5e-21 Score=131.55 Aligned_cols=120 Identities=23% Similarity=0.399 Sum_probs=93.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...++++++|++|+|||||++++.+..+....++.+.+. ..+..++ ..+.+||++|+..+...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 346999999999999999999999987755666666433 3333443 578899999998888888888999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+|+++..++......+...+... ...+.|+++++||+|+.+..
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~ 131 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAA 131 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCC
Confidence 999999888887776344443332 34578999999999996543
No 132
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.87 E-value=1.8e-21 Score=134.61 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=91.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc-cEEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA-QGIIMVYD 93 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~v~v~d 93 (154)
+|+++|++++|||||+++|..+++....++...+.........+....+.+||+||+..++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988754444433222222222123456799999999999998888889998 99999999
Q ss_pred CCCc-chHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchh
Q 031704 94 VTRR-DTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+++. .++......|...+.... .....|+++++||+|+..+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 9987 677777774555544321 235789999999999976543
No 133
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=9.6e-22 Score=130.06 Aligned_cols=123 Identities=24% Similarity=0.409 Sum_probs=104.9
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
......+|+++|..+|||||+++++..++.....||.|.+.....+ +.+.+.+||..|++.++..|..++++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEE
Confidence 3567799999999999999999999999997779999865554444 367899999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|+|+|.++++.+...++.+...+... ...+.|+++++||.|+..+..
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~-~l~~~~llv~aNKqD~~~als 135 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEP-ELRNAPLLVFANKQDLPGALS 135 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCc-ccCCceEEEEechhhccccCC
Confidence 99999999999999888565555543 456789999999999976554
No 134
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=2.7e-21 Score=133.70 Aligned_cols=124 Identities=23% Similarity=0.208 Sum_probs=87.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSS 80 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 80 (154)
+..++|+++|++|||||||++++++... ....+..+.+.....+..++. ..+.+|||||... +.... .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 4458999999999999999999999875 222233333344444444433 3788999999632 11111 2
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
.+..+|++++|+|++++.++..... |.+.+... ...+.|+++|+||+|+..+....
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~ 172 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKEL-GAEDIPMILVLNKIDLLDDEELE 172 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHc-CcCCCCEEEEEEccccCChHHHH
Confidence 2567999999999999888877665 66666654 34568999999999997665443
No 135
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.7e-21 Score=149.78 Aligned_cols=134 Identities=23% Similarity=0.209 Sum_probs=94.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEE--EEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--KHVALGGKKMKLAIWDTAGQER--------FRTLTSSY 81 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 81 (154)
..++|+++|.+|+|||||+|++++.......+..+.+... .....++ ..+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4479999999999999999999998764334444444333 3333444 3578999999752 33334556
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
++++|++++|+|+++..++.. .. |.+.++. .+.|+++|+||+|+.... ....+.+.++++.++++|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~-i~~~l~~----~~~piilV~NK~Dl~~~~-~~~~~~~~~g~~~~~~iS 180 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EA-VARVLRR----SGKPVILAANKVDDERGE-ADAAALWSLGLGEPHPVS 180 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HH-HHHHHHH----cCCCEEEEEECccCCccc-hhhHHHHhcCCCCeEEEE
Confidence 889999999999998766543 22 4445543 478999999999996432 334556677777777776
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.86 E-value=6.9e-21 Score=127.79 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=82.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCcc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSY---YRGAQ 86 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~ 86 (154)
+|+++|.+|+|||||++++.+.+. ....+..+.......+..++ ...+.+|||||..+ .+.+...+ ++.+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 589999999999999999997654 11122222222222333332 24789999999632 22222232 44699
Q ss_pred EEEEEEECCCc-chHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhh
Q 031704 87 GIIMVYDVTRR-DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 87 ~~v~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
++++|+|+++. ++++.+.. |.+.+..... ....|+++|+||+|+.++...
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~ 132 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEEL 132 (170)
T ss_pred EEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhh
Confidence 99999999998 78888876 8877766532 246899999999999765543
No 137
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=7e-21 Score=120.59 Aligned_cols=122 Identities=28% Similarity=0.483 Sum_probs=106.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+.++|+.+|..++||||++..|..+......|+.|.+.....+ +.+.+++||..|++..+..|++++....++||
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 45799999999999999999999999988888999866554444 56789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
|+|..+.+..+++++.+...+... ...+.++.|.+||.|+.+++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~-em~~~~~LvlANkQDlp~A~~p 136 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDR-EMRDAIILILANKQDLPDAMKP 136 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCH-hhhcceEEEEecCcccccccCH
Confidence 999999999999998777776654 6678899999999999877754
No 138
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.85 E-value=1.7e-20 Score=125.76 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=78.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc---------cccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL---------TSSYYR 83 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---------~~~~~~ 83 (154)
++|+++|.+|+|||||++++.+..+. ...+..+.+...... ....+.+.+|||||....... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 37999999999999999999998763 222222222222222 223578999999997431110 001112
Q ss_pred CccEEEEEEECCCcchH--HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704 84 GAQGIIMVYDVTRRDTF--TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
.+|++++|+|+++..++ +.... |.+.+... ..+.|+++|+||+|+...+.+.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~ 132 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLS-LFEEIKPL--FKNKPVIVVLNKIDLLTFEDLS 132 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHH-HHHHHHhh--cCcCCeEEEEEccccCchhhHH
Confidence 36899999999987653 44444 66666543 2478999999999997665543
No 139
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.85 E-value=7.6e-21 Score=130.62 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=85.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc--CCCCCC-------------CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS--DTFEEL-------------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT 78 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (154)
.+|+++|.+++|||||+++|+. +.+... ..+.+.+.......+....+.+.+|||||++++....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 444221 1234555555555555667889999999999999989
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
..+++.+|++++|+|+++.. +..... |...+.. .+.|+++|+||+|+...+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~~----~~~p~iiv~NK~Dl~~~~ 133 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKALE----LGLKPIVVINKIDRPDAR 133 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 99999999999999998742 222222 3333322 367899999999996543
No 140
>PRK15494 era GTPase Era; Provisional
Probab=99.85 E-value=1.4e-20 Score=139.04 Aligned_cols=116 Identities=18% Similarity=0.311 Sum_probs=78.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCCccc-cccc-------ccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAGQER-FRTL-------TSS 80 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~-------~~~ 80 (154)
.+..+|+++|.+|+|||||+|+|++..+....+..+. ......+..++ ..+.+|||||... +..+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 4567999999999999999999999887443333332 23333444444 4679999999743 2221 112
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.++.+|++++|+|..+ ++......|.+.+... +.|.++|+||+|+.+.
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~~ 175 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIESK 175 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCccc
Confidence 3678999999999765 4444444355555443 4577899999999754
No 141
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=3.3e-20 Score=136.58 Aligned_cols=123 Identities=19% Similarity=0.156 Sum_probs=89.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRGA 85 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 85 (154)
-.|+++|.|+||||||++++.+.+. ...++.++.......+.+. ....+.+||+||..+ +...+..+++++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 3588999999999999999998765 3344555555555555543 234688999999532 222334456789
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
+++++|+|+++.++++.+.. |.+.+..+.. ..+.|+++|+||+|+.++..+.
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~ 290 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEER 290 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHH
Confidence 99999999998888888877 8888876522 2468999999999997665443
No 142
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=2.9e-20 Score=137.79 Aligned_cols=122 Identities=24% Similarity=0.234 Sum_probs=88.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTSSY 81 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 81 (154)
..++|+++|.+|+|||||+|+|.+... ....+.++.+.....+.+.+. ..+.+|||+|.. .+.... ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 448999999999999999999999875 333344444555566666432 378899999962 222222 24
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
++++|++++|+|++++.+.+.... |...+... ...+.|+++|+||+|+.+...+
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v 319 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEA-VEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI 319 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHh-ccCCCCEEEEEEeecCCChHhH
Confidence 778999999999999888777655 66666654 3456899999999999765433
No 143
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=4.6e-20 Score=122.89 Aligned_cols=115 Identities=20% Similarity=0.163 Sum_probs=76.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---C-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF---E-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.|+++|.+++|||||+++|.+... . ...+..+.+.....+.+.+ ...+.+|||||++.+......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 689999999999999999997432 1 2223333333333444432 3578999999999887766777889999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+|+++... ..... +...+... ...|+++|+||+|+..+.
T Consensus 81 V~d~~~~~~-~~~~~-~~~~~~~~---~~~~~ilv~NK~Dl~~~~ 120 (164)
T cd04171 81 VVAADEGIM-PQTRE-HLEILELL---GIKRGLVVLTKADLVDED 120 (164)
T ss_pred EEECCCCcc-HhHHH-HHHHHHHh---CCCcEEEEEECccccCHH
Confidence 999987221 11111 11122221 124899999999997653
No 144
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=5e-21 Score=142.33 Aligned_cols=132 Identities=23% Similarity=0.183 Sum_probs=96.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEE--EEEEECCeEEEEEEEeCCCcccc---------cccccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--KHVALGGKKMKLAIWDTAGQERF---------RTLTSSYY 82 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~ 82 (154)
..|+++|.||+|||||+|||.+++.+-...+.|.|-.. ....+.+. .+.++||+|-+.. .+.....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999999985555555544333 33344443 4888999995532 23345567
Q ss_pred cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
.++|++++|+|....-+-++. ...+.++. .++|+++|+||+|-. ..+....++|++|+++++|||
T Consensus 82 ~eADvilfvVD~~~Git~~D~--~ia~~Lr~----~~kpviLvvNK~D~~-~~e~~~~efyslG~g~~~~IS 146 (444)
T COG1160 82 EEADVILFVVDGREGITPADE--EIAKILRR----SKKPVILVVNKIDNL-KAEELAYEFYSLGFGEPVPIS 146 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHHh----cCCCEEEEEEcccCc-hhhhhHHHHHhcCCCCceEee
Confidence 889999999998875443221 12334442 468999999999998 556677899999999999998
No 145
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.84 E-value=3.2e-20 Score=133.57 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=76.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEE-EEEEECCeEEEEEEEeCCCcccccc--------cccccccCc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI-KHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGA 85 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~ 85 (154)
+|+++|.+|+|||||+|+|++.+....++..+.|... ..+...+ ...+.+|||||...... ....+++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 6899999999999999999998864333322222211 1122222 24689999999653211 123457889
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|++++|+|+++..+.+ ..+.+.+.. .+.|+++|+||+|+.....
T Consensus 81 Dvvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~ 124 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDK 124 (270)
T ss_pred CEEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHH
Confidence 9999999999876654 224444443 3689999999999975443
No 146
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.84 E-value=1e-19 Score=118.69 Aligned_cols=119 Identities=47% Similarity=0.765 Sum_probs=92.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 031704 18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR 96 (154)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~ 96 (154)
++|++|+|||||++++.+... ......+..+..............+.+||+||...+.......++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998877 3333333366666666666778899999999988887777788899999999999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 97 RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+.++..... |.............|+++++||+|+......
T Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~ 120 (157)
T cd00882 81 RESFENVKE-WLLLILINKEGENIPIILVGNKIDLPEERVV 120 (157)
T ss_pred HHHHHHHHH-HHHHHHHhhccCCCcEEEEEeccccccccch
Confidence 998888877 4222222225668899999999999765543
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.83 E-value=6.3e-20 Score=139.52 Aligned_cols=114 Identities=24% Similarity=0.251 Sum_probs=83.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY 81 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (154)
..+||+++|++|+|||||+|+|++... ....+.++.+.....+.+++ ..+.+|||||....... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998764 33344444445455556655 45689999997554322 2356
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++++|++++|+|++++.+++.. |...+. ..+.|+++|+||+|+...
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN 325 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc
Confidence 7899999999999998876654 444443 236799999999999654
No 148
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=2.8e-20 Score=123.00 Aligned_cols=129 Identities=25% Similarity=0.202 Sum_probs=84.1
Q ss_pred EEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 031704 17 LLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGAQ 86 (154)
Q Consensus 17 ~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~ 86 (154)
+++|.+|+|||||++++.+... ....+..+..........++ ..+.+|||||...+.. .....++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 4789999999999999998764 22233332233333333333 5788999999877543 3345578899
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
++++|+|..+..+.... . +.+.++. .+.|+++|+||+|+..+... ...++.++...++++|
T Consensus 79 ~ii~v~d~~~~~~~~~~-~-~~~~~~~----~~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~~~~S 139 (157)
T cd01894 79 VILFVVDGREGLTPADE-E-IAKYLRK----SKKPVILVVNKVDNIKEEDE-AAEFYSLGFGEPIPIS 139 (157)
T ss_pred EEEEEEeccccCCccHH-H-HHHHHHh----cCCCEEEEEECcccCChHHH-HHHHHhcCCCCeEEEe
Confidence 99999999875544332 1 2233333 25899999999999876554 3444445544555554
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.83 E-value=7.5e-20 Score=120.87 Aligned_cols=113 Identities=21% Similarity=0.215 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYR 83 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 83 (154)
++|+++|++|+|||||++++.+.... ...+..+.......+... ...+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999988752 223333333333334433 357889999997654332 224567
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++|++++|+|++++.+...... |.. ....|+++|+||+|+.++..
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCccc
Confidence 8999999999998777666544 222 34689999999999976554
No 150
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.83 E-value=1.4e-19 Score=122.80 Aligned_cols=120 Identities=22% Similarity=0.255 Sum_probs=82.9
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------RFR 75 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~ 75 (154)
+.+....++|+++|.+|+|||||+|++.+..+ ....++.+.+.....+..++ .+.+|||||.. .+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 44557789999999999999999999999864 44555655555555454443 58899999943 222
Q ss_pred cccccccc---CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 76 TLTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 76 ~~~~~~~~---~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.....+++ .++++++|+|++++.+.... . +...+.. .+.|+++++||+|+..+.
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~-~~~~~~~----~~~pviiv~nK~D~~~~~ 145 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-E-MLEWLRE----RGIPVLIVLTKADKLKKS 145 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-H-HHHHHHH----cCCCEEEEEECcccCCHH
Confidence 33334444 35899999999876554443 2 2233332 368999999999997553
No 151
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-19 Score=115.70 Aligned_cols=128 Identities=24% Similarity=0.370 Sum_probs=102.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-cccccccccCccE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF---EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-RTLTSSYYRGAQG 87 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~ 87 (154)
+.-|++++|..++|||+++.+++.+.. .+..|+....+....-+-.+..-.+.++||.|-... .++...++.-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 447999999999999999999987776 455666665554443333455567899999997776 5666778888999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
+++|||..+++||+.+.. +...+.+...+...|+++++||+|+..++++..+
T Consensus 88 fVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d 139 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMD 139 (198)
T ss_pred EEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHH
Confidence 999999999999998877 7778887767788999999999999877776443
No 152
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=120.39 Aligned_cols=118 Identities=26% Similarity=0.449 Sum_probs=100.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+.+.++|..++|||||+|.+..+.+ ....|+.|... ..+....+.+.+||.+|+..++.+|..+.+.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 357899999999999999999999888 67788888433 2344456789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|.|+++++.++..+..+...+.+. .-..+|+.++|||.|+.++
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~-~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKP-SLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcch-hhcCCcEEEecccccCccc
Confidence 999999999998888677777654 5678999999999999654
No 153
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=1.6e-19 Score=120.89 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=80.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-CCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
.|+++|.+|+|||||+++|...++... .+..+.+.....+... +....+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998887332 2222222222233322 23568899999999988888888889999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+++....+.... ...+.. .+.|+++|+||+|+...
T Consensus 82 d~~~~~~~~~~~~--~~~~~~----~~~p~ivv~NK~Dl~~~ 117 (168)
T cd01887 82 AADDGVMPQTIEA--IKLAKA----ANVPFIVALNKIDKPNA 117 (168)
T ss_pred ECCCCccHHHHHH--HHHHHH----cCCCEEEEEEceecccc
Confidence 9987543222211 122222 46789999999999754
No 154
>PTZ00099 rab6; Provisional
Probab=99.82 E-value=2.2e-19 Score=121.58 Aligned_cols=103 Identities=39% Similarity=0.606 Sum_probs=87.8
Q ss_pred CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCC
Q 031704 39 EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118 (154)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (154)
..+.++.+.++....+.+++..+.+.||||+|++.+...+..+++.+|++++|||++++.+|+.+.. |+..+... ...
T Consensus 7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~-~~~ 84 (176)
T PTZ00099 7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNE-RGK 84 (176)
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCC
Confidence 4567888888888888899999999999999999999999999999999999999999999999987 88877665 335
Q ss_pred CCcEEEEEeCCCCCCchhhhhhhhh
Q 031704 119 DCIKLLVGNKVDKVCPWRLFLSGFW 143 (154)
Q Consensus 119 ~~~~ivv~nK~Dl~~~~~~~~~~~~ 143 (154)
+.|++||+||+||...+.+..++..
T Consensus 85 ~~piilVgNK~DL~~~~~v~~~e~~ 109 (176)
T PTZ00099 85 DVIIALVGNKTDLGDLRKVTYEEGM 109 (176)
T ss_pred CCeEEEEEECcccccccCCCHHHHH
Confidence 6899999999999765555544443
No 155
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=3.8e-20 Score=121.98 Aligned_cols=131 Identities=21% Similarity=0.179 Sum_probs=84.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--RG 84 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 84 (154)
++|+++|.||+|||||+|+|++.+. ...+|..+.+.....+..++ ..+.++|+||...... ....++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999986 34445555556556666666 4677889999433222 223333 57
Q ss_pred ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh--hhhhhhhhhhccccccC
Q 031704 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL--FLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~S 154 (154)
.|++++|.|+++.+.-. . +..++... ++|+++++||+|+..+... ..+.+.+.....++|+|
T Consensus 79 ~D~ii~VvDa~~l~r~l---~-l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---Y-LTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVS 142 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---H-HHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEB
T ss_pred CCEEEEECCCCCHHHHH---H-HHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEE
Confidence 89999999998754322 2 33344443 7999999999999755543 44555555444556654
No 156
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=4.2e-20 Score=140.98 Aligned_cols=132 Identities=25% Similarity=0.192 Sum_probs=90.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR 83 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (154)
++|+++|.+|+|||||+|+|.+.+.. ...+..+.+........++ ..+.+|||||.+. +......+++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999988753 2233333333444455554 6789999999876 2233445678
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
++|++++|+|+.+..+.... . ....++. .+.|+++|+||+|+.+. .....+++.+++.+++++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~-~-~~~~l~~----~~~piilv~NK~D~~~~-~~~~~~~~~lg~~~~~~iS 143 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADE-E-IAKILRK----SNKPVILVVNKVDGPDE-EADAYEFYSLGLGEPYPIS 143 (435)
T ss_pred hCCEEEEEEECCCCCCHHHH-H-HHHHHHH----cCCcEEEEEECccCccc-hhhHHHHHhcCCCCCEEEE
Confidence 99999999999875443321 1 2223333 26899999999997642 3444666777777777776
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.82 E-value=8.5e-20 Score=139.05 Aligned_cols=131 Identities=26% Similarity=0.249 Sum_probs=91.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSYYRG 84 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~ 84 (154)
+|+++|.+|+|||||+|++.+.+........+.+ ........++. .+.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999988753333333333 33334444443 58899999963 334445566889
Q ss_pred ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
+|++++|+|+.+..+.... . +...++. .+.|+++|+||+|+..... ...+++++++.+++++|
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~-i~~~l~~----~~~piilVvNK~D~~~~~~-~~~~~~~lg~~~~~~vS 141 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-E-IAKWLRK----SGKPVILVANKIDGKKEDA-VAAEFYSLGFGEPIPIS 141 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-H-HHHHHHH----hCCCEEEEEECccCCcccc-cHHHHHhcCCCCeEEEe
Confidence 9999999999875444331 1 3334443 3678999999999975543 34567788888888876
No 158
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.82 E-value=3e-19 Score=131.33 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRGA 85 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~ 85 (154)
-.|+++|.++||||||++++.+.+. ...++.++.......+.+++ ...+.+||+||..+ ....+..++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4689999999999999999998765 33344444445555555543 35789999999642 112233345679
Q ss_pred cEEEEEEECCCc---chHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchh
Q 031704 86 QGIIMVYDVTRR---DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 86 ~~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+++++|+|+++. +.++.+.. |.+++..+.. ..+.|+++|+||+|+..+..
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~ 290 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE 290 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH
Confidence 999999999986 56777766 7777765522 24689999999999976543
No 159
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.82 E-value=9.5e-20 Score=122.75 Aligned_cols=119 Identities=25% Similarity=0.246 Sum_probs=78.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCccEEE
Q 031704 18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLT---SSYYRGAQGII 89 (154)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~v 89 (154)
++|++|+|||||++++.+... ....+..+.+.....+..+ ....+.+|||||... .+... ...++.+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999875 1222222222222333333 145688999999632 22222 23467899999
Q ss_pred EEEECCCc------chHHHHHHHHHHHHhhhcCC------CCCcEEEEEeCCCCCCchhhh
Q 031704 90 MVYDVTRR------DTFTNLADIWAKEIDLYSTN------QDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 90 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~~------~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
+|+|+++. .+++.... |...+...... .+.|+++|+||+|+.......
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~ 139 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELE 139 (176)
T ss_pred EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHH
Confidence 99999987 46666655 65555543221 478999999999997665543
No 160
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.81 E-value=3e-19 Score=118.32 Aligned_cols=109 Identities=21% Similarity=0.231 Sum_probs=77.5
Q ss_pred EEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEE
Q 031704 18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL------TSSYY--RGAQGI 88 (154)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~ 88 (154)
++|.+|+|||||++++.+..+ ....+..+.+.....+..++ ..+.+|||||...+... ...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 579999999999999998865 33445555555555566654 47899999998766542 34445 489999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++|+|+.+..... . |...+.. .+.|+++|+||+|+.+...
T Consensus 79 i~v~d~~~~~~~~---~-~~~~~~~----~~~~~iiv~NK~Dl~~~~~ 118 (158)
T cd01879 79 VNVVDATNLERNL---Y-LTLQLLE----LGLPVVVALNMIDEAEKRG 118 (158)
T ss_pred EEEeeCCcchhHH---H-HHHHHHH----cCCCEEEEEehhhhccccc
Confidence 9999998765432 2 3333333 3689999999999976543
No 161
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.81 E-value=2.1e-19 Score=114.14 Aligned_cols=126 Identities=26% Similarity=0.431 Sum_probs=107.1
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
...+.+||.++|-.++|||||+..|.+.+.....|+.|.+. ..+..+ ..+++++||..|+...+..|..|+.+.|++
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~--k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT--KKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce--EEEeec-CcEEEEEEecCCccccchhhhhhhhccceE
Confidence 34678999999999999999999999988888888888544 444444 357999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
++|+|.++...|+++.+.+.+.+... +....|+.+.+||.|+..+.+++
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleee-Kl~~vpvlIfankQdlltaa~~e 138 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEE-KLAEVPVLIFANKQDLLTAAKVE 138 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhh-hhhccceeehhhhhHHHhhcchH
Confidence 99999999999999988777777665 55678999999999997666553
No 162
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.81 E-value=7.2e-20 Score=119.66 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCccEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE-----RFRTLTSSYYRGAQGII 89 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~v 89 (154)
||+++|++|+|||||++++.++.+ .+.++.+.+ +.. .+|||||.. .++.+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-~~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-LYKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-ccccceeEE-------EcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 899999999999999999998765 222332211 111 579999972 3343333 478999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+|+|++++.++... . |...+ ..|+++|+||+|+.+
T Consensus 68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE 102 (142)
T ss_pred EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC
Confidence 99999999887542 2 43321 238999999999964
No 163
>PRK04213 GTP-binding protein; Provisional
Probab=99.81 E-value=9.4e-20 Score=125.72 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=73.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAG-----------QERFRTLTS 79 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~ 79 (154)
..++|+++|.+|+|||||+|++.+..+. ...+ +.+.....+... .+.+||||| ++.++..+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 3479999999999999999999988763 2233 334443343333 588999999 345555444
Q ss_pred cccc----CccEEEEEEECCCcchHHH---------HHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 80 SYYR----GAQGIIMVYDVTRRDTFTN---------LADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 80 ~~~~----~~~~~v~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.+++ .++++++|+|.++...+.. ....+...+ ...+.|+++|+||+|+..++
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~p~iiv~NK~Dl~~~~ 146 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL----RELGIPPIVAVNKMDKIKNR 146 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH----HHcCCCeEEEEECccccCcH
Confidence 4443 4578888888765322100 001012222 22478999999999997554
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.80 E-value=2.2e-19 Score=137.12 Aligned_cols=115 Identities=23% Similarity=0.199 Sum_probs=83.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY 81 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (154)
..++|+++|.+|+|||||+|++++.+. ....+.++.+.....+..++ ..+.+|||||....... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 348999999999999999999998775 33344444444445555554 46789999997654332 2235
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++++|++++|+|++++.+++.... |.. ..+.|+++|+||+|+.....
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~ 338 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEID 338 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccch
Confidence 788999999999999887765433 433 34679999999999975543
No 165
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=3.8e-19 Score=142.48 Aligned_cols=136 Identities=20% Similarity=0.149 Sum_probs=93.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (154)
...+|+++|.+++|||||+|++++.+.....+..|.+.........-....+.+|||||.+. +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 45789999999999999999999887644444445444433332221234688999999653 2333445678
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
.+|++++|+|+++.-. .....|...++. .+.|+++|+||+|+.... ....+++.+++..++++|
T Consensus 354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~-~~~~~~~~lg~~~~~~iS 417 (712)
T PRK09518 354 LADAVVFVVDGQVGLT--STDERIVRMLRR----AGKPVVLAVNKIDDQASE-YDAAEFWKLGLGEPYPIS 417 (712)
T ss_pred hCCEEEEEEECCCCCC--HHHHHHHHHHHh----cCCCEEEEEECcccccch-hhHHHHHHcCCCCeEEEE
Confidence 9999999999986432 222225555543 478999999999996542 234566677777788876
No 166
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=8.5e-19 Score=137.57 Aligned_cols=116 Identities=24% Similarity=0.287 Sum_probs=88.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC-------C-CCCC------CcceeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDT-------F-EELS------PTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQER 73 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~-------~-~~~~------~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~ 73 (154)
..+|+++|+.++|||||+++|+... + ..+. ...|++.......+ ++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 5699999999999999999998642 1 1111 22355555443332 56678999999999999
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|...+..+++.+|++++|+|+++..+.+.... |...+. .+.|+++|+||+|+.+.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~~-----~~ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLALE-----NDLEIIPVINKIDLPSA 137 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHHH-----cCCCEEEEEECcCCCcc
Confidence 99889999999999999999998776666555 443332 35789999999999654
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.80 E-value=1.4e-18 Score=131.62 Aligned_cols=119 Identities=22% Similarity=0.210 Sum_probs=84.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc--ccc------cccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF--RTL------TSSYYR 83 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~------~~~~~~ 83 (154)
.++|+++|.+|+|||||+|+|.+.+. ....+..+.+.....+.+.+. ..+.+|||+|.... ... ....++
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 36899999999999999999998775 333444444455555555442 25679999997321 111 122357
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.+|++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+...
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el-~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEA-VNTVLEEI-DAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHH-HHHHHHHh-ccCCCCEEEEEEcccCCCc
Confidence 8999999999999888777655 55555544 3457899999999999753
No 168
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=2.3e-18 Score=129.96 Aligned_cols=118 Identities=21% Similarity=0.173 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cccc---ccccccCcc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTL---TSSYYRGAQ 86 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~---~~~~~~~~~ 86 (154)
.|+++|.++||||||++++.+.+. ...+|.++.+.....+.+++ ...+.+||+||... ...+ ...++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999998775 33345554444444444431 34689999999532 1122 233456799
Q ss_pred EEEEEEECCCc---chHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCc
Q 031704 87 GIIMVYDVTRR---DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 87 ~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~ 134 (154)
++++|+|+++. +.++.... |.+.+..+.. ....|++||+||+|+...
T Consensus 239 llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~ 289 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA 289 (424)
T ss_pred EEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC
Confidence 99999999864 56666655 7777776532 246899999999998543
No 169
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=1.1e-18 Score=123.15 Aligned_cols=132 Identities=14% Similarity=0.096 Sum_probs=89.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--------------CC---CCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFE--------------EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (154)
+|+++|+.++|||||+++++...-. +. ....+.+.......+.....++++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999864210 00 112233444444444445678999999999998888
Q ss_pred ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch-hhhhhhhhhhhhccccc
Q 031704 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW-RLFLSGFWHFLLSKFYC 152 (154)
Q Consensus 78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~ 152 (154)
+..+++.+|++++|+|+++.... .... +...+.. .+.|+++++||+|+.... ....+++.......++|
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~-~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~ 150 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRI-LWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVP 150 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHH-HHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEE
Confidence 88899999999999999986543 2233 3344433 367999999999997543 22334444433333333
No 170
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=1.5e-18 Score=126.23 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=75.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--------TLTSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 83 (154)
+.-.|+++|.+|+|||||+|++++.+.....+....+..............+.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 3457999999999999999999998874333332222221111111223688999999964422 22334567
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.+|++++|+|+++..+ .....+.+.+. ..+.|+++|+||+|+...
T Consensus 84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~----~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGDEFILEKLK----KVKTPVILVLNKIDLVKD 128 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhHHHHHHHHh----hcCCCEEEEEECCcCCCC
Confidence 8999999999988322 11221223333 236799999999999843
No 171
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=8.6e-19 Score=134.84 Aligned_cols=115 Identities=23% Similarity=0.199 Sum_probs=82.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------cccccc-
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------RFRTLT- 78 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~- 78 (154)
..+||+++|.+++|||||+|+|++... ....+.++.+.....+..++.. +.+|||||.. .+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999999875 2334444444444556666654 5789999952 222221
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
..+++.+|++++|+|+++..++..... ...+. ..+.|+++|+||+|+..+
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~--~~~~~----~~~~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRV--LSMVI----EAGRALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHH--HHHHH----HcCCCEEEEEECcccCCh
Confidence 235789999999999999888776532 33332 246899999999999753
No 172
>COG1159 Era GTPase [General function prediction only]
Probab=99.78 E-value=2e-18 Score=122.52 Aligned_cols=137 Identities=21% Similarity=0.195 Sum_probs=92.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (154)
+.--++++|.|++|||||+|++++.+..-.++-...|-.....-+.....++.|+||||-.. +.......+.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 44679999999999999999999999855444443333333333334466889999999433 2233444577
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh--hhhhhh--hhhhccccccC
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL--FLSGFW--HFLLSKFYCSS 154 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~--~~~~~~--~~~~~~~~~~S 154 (154)
.+|++++|.|++....- -..+..+.++. .+.|++++.||+|...+... ...+.+ .+.+.+++|+|
T Consensus 85 dvDlilfvvd~~~~~~~--~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 85 DVDLILFVVDADEGWGP--GDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred cCcEEEEEEeccccCCc--cHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEee
Confidence 89999999999873322 22223344443 46799999999999877763 222222 35666788887
No 173
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=2.8e-18 Score=131.18 Aligned_cols=121 Identities=17% Similarity=0.176 Sum_probs=83.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cc---ccccccccC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FR---TLTSSYYRG 84 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~~~ 84 (154)
.-.|+++|.||||||||+|+|.+.+. ...+|.++.......+...+ ..+.+||+||... .. .....++.+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 35789999999999999999998765 33445555555555555544 4789999999531 11 123345678
Q ss_pred ccEEEEEEECCCc----chHHHHHHHHHHHHhhhc----------CCCCCcEEEEEeCCCCCCchh
Q 031704 85 AQGIIMVYDVTRR----DTFTNLADIWAKEIDLYS----------TNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 85 ~~~~v~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+|++++|+|+++. +.++.+.. |...+..+. .....|++||+||+|+.+...
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e 301 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE 301 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH
Confidence 9999999999853 34444444 555555442 124689999999999976544
No 174
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.78 E-value=1.5e-18 Score=111.83 Aligned_cols=122 Identities=28% Similarity=0.572 Sum_probs=110.7
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
..+.-.+||.++|.+..|||||+-.+.++.+ ..+..+.|.++.-+.+.+.+..+.+.+||..|++++..+.+....++-
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred cccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcE
Confidence 3455679999999999999999999999988 677788999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+++++||++++.++..+.+ |+++.+.. .+..+| |+||+|.|+.
T Consensus 95 aIlFmFDLt~r~TLnSi~~-WY~QAr~~-NktAiP-ilvGTKyD~f 137 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKE-WYRQARGL-NKTAIP-ILVGTKYDLF 137 (205)
T ss_pred EEEEEEecCchHHHHHHHH-HHHHHhcc-CCccce-EEeccchHhh
Confidence 9999999999999999999 99998876 556667 6889999974
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=2.9e-18 Score=114.91 Aligned_cols=115 Identities=26% Similarity=0.184 Sum_probs=76.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-----------LTS 79 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 79 (154)
.++|+++|.+|+|||||++++++.... ...+..........+..++. .+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 479999999999999999999987642 22222222222233444443 477999999643311 112
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
..++.+|++++|+|+.++.+..... +...+. ..+.|+++++||+|+.+..
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~ 129 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKD 129 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCcc
Confidence 3457899999999999887754432 222222 2357999999999997663
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=4.2e-18 Score=129.80 Aligned_cols=114 Identities=29% Similarity=0.214 Sum_probs=79.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------- 77 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 77 (154)
...++++++|.+++|||||+|++++.... ...+.++.+.....+..++. .+.+|||||.......
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence 45689999999999999999999987752 22333333333334444443 6789999996543322
Q ss_pred ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
...+++.+|++++|+|++++.+..... +...+. ..+.|+++|+||+|+.
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccC
Confidence 123578899999999999877665542 222222 2368999999999997
No 177
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.77 E-value=7.1e-18 Score=112.11 Aligned_cols=115 Identities=19% Similarity=0.169 Sum_probs=75.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRG 84 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 84 (154)
..+|+++|++|+|||||++++.+.+.....+....+............+.+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999887632222222221112222233346788999999654322 23344778
Q ss_pred ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+|++++|+|+++..+ .....+.+.+... +.|+++|+||+|+..
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~~----~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKKS----KTPVILVLNKIDLVK 125 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHHh----CCCEEEEEEchhccc
Confidence 999999999998622 2222133344332 678999999999974
No 178
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.76 E-value=8.7e-18 Score=114.29 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCc---------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPT---------------IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (154)
+|+++|.+|+|||||+|++++......... .+.+..............+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999998876332211 11222222222222346789999999988888888
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.+++.+|++++|+|+.+..+.... . +...+. ..+.|+++|+||+|+..+
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~~~----~~~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTR-E-HLRIAR----EGGLPIIVAINKIDRVGE 129 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHH-H-HHHHHH----HCCCCeEEEEECCCCcch
Confidence 888999999999999876543322 2 222332 247899999999999863
No 179
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=1.3e-17 Score=125.15 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=84.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccCcc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-------RTLTSSYYRGAQ 86 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~ 86 (154)
.|+++|.||||||||+|++.+.+. ...+|.++.......+...+ ...+.++||||...- ......++.++|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 789999999999999999998765 33345444444444554432 235889999996431 122334578899
Q ss_pred EEEEEEECC---CcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhh
Q 031704 87 GIIMVYDVT---RRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 87 ~~v~v~d~~---~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
++++|+|++ +.+.++.... |.+.+..+.. ....|+++|+||+|+..+..+
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el 293 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA 293 (390)
T ss_pred EEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH
Confidence 999999988 4456666655 7666665421 246799999999999765443
No 180
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.76 E-value=1.3e-17 Score=114.38 Aligned_cols=118 Identities=24% Similarity=0.259 Sum_probs=78.9
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------RFRTL 77 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~ 77 (154)
..+..++|+++|.+|+|||||++++.++++ ....++.+.+........ ...+.+|||||.. .+...
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~ 96 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL 96 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence 445678999999999999999999999874 555556555544444333 2578999999942 23333
Q ss_pred ccccccC---ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 78 TSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 78 ~~~~~~~---~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
...+++. .+++++++|.+++.+.... . +...+. ..+.|+++++||+|+....
T Consensus 97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-i~~~l~----~~~~~~iiv~nK~Dl~~~~ 151 (196)
T PRK00454 97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-Q-MIEWLK----EYGIPVLIVLTKADKLKKG 151 (196)
T ss_pred HHHHHHhCccceEEEEEEecCCCCCHHHH-H-HHHHHH----HcCCcEEEEEECcccCCHH
Confidence 3334443 4688888998775543321 1 122222 2367899999999997654
No 181
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.75 E-value=1.2e-17 Score=119.88 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=81.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC--C----------------CCC---CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF--E----------------ELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~--~----------------~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (154)
.+|+++|++++|||||+++++...- . ++. ...+.+.......+....+.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5899999999999999999985321 0 000 012334445555555567889999999999
Q ss_pred cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+|.......++.+|++++|+|+++.... .... +.+... ..+.|+++++||+|+....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~-i~~~~~----~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRK-LFEVCR----LRGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHH-HHHHHH----hcCCCEEEEEECCccCCCC
Confidence 8887777778999999999999875432 2222 223322 2468999999999986554
No 182
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.75 E-value=2.9e-17 Score=128.61 Aligned_cols=117 Identities=16% Similarity=0.170 Sum_probs=82.8
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
..+.++|+++|+.++|||||++++.+.++.. ..+..+.+.....+..++. ..+.+|||||++.|..++...++.+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 3466899999999999999999999887732 2222222232333334322 2789999999999999888889999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
++|+|+++...-..... + ... ...+.|+++++||+|+..
T Consensus 163 ILVVda~dgv~~qT~e~-i-~~~----~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEA-I-SHA----KAANVPIIVAINKIDKPE 201 (587)
T ss_pred EEEEECCCCCCHhHHHH-H-HHH----HHcCCCEEEEEECccccc
Confidence 99999887432222211 2 111 234689999999999964
No 183
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.75 E-value=1.2e-17 Score=114.61 Aligned_cols=115 Identities=16% Similarity=0.169 Sum_probs=73.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC----C----CCC--CCcceeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT----F----EEL--SPTIGVDFKIKHVA----------LGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~----~----~~~--~~~~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~ 73 (154)
+||+++|++++|||||+++|+... + ... ..+...+.....+. ..+..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 489999999999999999999731 1 111 12222222222222 123367899999999876
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+........+.+|++++|+|+++......... +. .... .+.|+++|+||+|+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~----~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI----LCKKLIVVLNKIDLIPE 135 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH----cCCCEEEEEECcccCCH
Confidence 54433344567899999999987554333322 22 1111 25689999999999743
No 184
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.74 E-value=1.3e-17 Score=115.76 Aligned_cols=115 Identities=21% Similarity=0.169 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC------------------------------CCcceeeeEEEEEEECCeEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL------------------------------SPTIGVDFKIKHVALGGKKMKLA 64 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 64 (154)
||+++|.+++|||||+++|+...-... ....+.+.......+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999975432110 00123333333333333445788
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+|||||+..+.......++.+|++++|+|+++...-.. .. ....+... ...++++|+||+|+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~-~~~~~~~~---~~~~iIvviNK~D~~~~ 145 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RR-HSYILSLL---GIRHVVVAVNKMDLVDY 145 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HH-HHHHHHHc---CCCcEEEEEEchhcccC
Confidence 99999998876666667889999999999987532222 11 11222221 12457889999999753
No 185
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.74 E-value=1.9e-17 Score=115.32 Aligned_cols=112 Identities=25% Similarity=0.339 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC------------------CCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL------------------SPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ 71 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~ 71 (154)
+|+++|+.++|||||+++|+....... ....+.+.......+ ++..+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987543111 011222322222222 355789999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
..+......+++.+|++++|+|+++..+... .. |...... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~-~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ER-LIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HH-HHHHHHH----cCCCEEEEEECcccC
Confidence 9988778888999999999999988765532 22 3333322 348999999999985
No 186
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.74 E-value=1.7e-17 Score=115.87 Aligned_cols=112 Identities=20% Similarity=0.258 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CC-------------CCcceeeeEEE--EEEEC--------CeEEEEEEEeCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFE--EL-------------SPTIGVDFKIK--HVALG--------GKKMKLAIWDTA 69 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~--~~-------------~~~~~~~~~~~--~~~~~--------~~~~~~~i~D~~ 69 (154)
+|+++|+.++|||||+.+|+...-. .. ....+++.... .+.+. ++.+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999999854320 00 01112222221 12222 447899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
|+..|......+++.+|++++|+|+.+..+...... |... . ..+.|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~~-~----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQA-L----KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHHH-H----HcCCCEEEEEECCCcc
Confidence 999999988999999999999999998765443222 2222 1 2357899999999985
No 187
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=3.6e-17 Score=131.41 Aligned_cols=115 Identities=18% Similarity=0.181 Sum_probs=81.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------ccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------TSSYY 82 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~~ 82 (154)
.++|+++|++|+|||||+|++.+.+. ......|.|...+...+......++++||||..++... ...++
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 37899999999999999999998765 33444555565555555556678899999998765432 11222
Q ss_pred --cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 83 --RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 83 --~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.++|++++|+|+++.++.. . |..++.+. +.|+++++||+|+.+++.
T Consensus 82 ~~~~aD~vI~VvDat~ler~l---~-l~~ql~e~----giPvIvVlNK~Dl~~~~~ 129 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNL---Y-LTLQLLEL----GIPCIVALNMLDIAEKQN 129 (772)
T ss_pred hccCCCEEEEEecCCcchhhH---H-HHHHHHHc----CCCEEEEEEchhhhhccC
Confidence 4789999999998865432 2 33344433 689999999999965443
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=2.8e-17 Score=125.47 Aligned_cols=117 Identities=26% Similarity=0.166 Sum_probs=78.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------- 77 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 77 (154)
...++|+++|.+++|||||+|++++.... ...+.++.+.....+..++ ..+.+|||||.......
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~ 248 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIR 248 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHH
Confidence 35699999999999999999999987642 2223332222223333444 45778999995332111
Q ss_pred ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
...+++.+|++++|+|++++.+..... +...+.. .+.|+++|+||+|+.++.
T Consensus 249 ~~~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~~----~~~~~ivv~NK~Dl~~~~ 300 (435)
T PRK00093 249 TLKAIERADVVLLVIDATEGITEQDLR--IAGLALE----AGRALVIVVNKWDLVDEK 300 (435)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHHH----cCCcEEEEEECccCCCHH
Confidence 123578899999999999876655442 2223322 367899999999997543
No 189
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.74 E-value=1.9e-17 Score=130.21 Aligned_cols=117 Identities=25% Similarity=0.268 Sum_probs=85.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--C------C------CCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E------E------LSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQE 72 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~------~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~ 72 (154)
...+|+++|+.++|||||+.+|+...- . . .....|++.......+ +++.+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 456999999999999999999986321 0 0 0112344444333222 5567899999999999
Q ss_pred cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++...+..+++.+|++++|+|+++......... |.... ..+.|+++|+||+|+..+
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-----~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEEEECCCCCcc
Confidence 999888899999999999999998765554444 43332 236789999999999654
No 190
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.73 E-value=3.7e-17 Score=124.49 Aligned_cols=120 Identities=19% Similarity=0.138 Sum_probs=81.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------------------CCCCcceeeeEEEEEEECCeE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALGGKK 60 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (154)
...++|+++|++++|||||+++|+...-. ......|.|.......+....
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 35689999999999999999999843210 001134455555555565667
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+.+.+|||||++.+.......++.+|++++|+|+++...+......+...+... ...|+++++||+|+.+
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVN 153 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEcccccc
Confidence 789999999998876655566788999999999987312211111122222222 2246899999999975
No 191
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.73 E-value=8e-18 Score=115.10 Aligned_cols=116 Identities=21% Similarity=0.215 Sum_probs=80.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------------CcceeeeEEEEEEEC--CeEEEEEEEeCCCcc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----------------PTIGVDFKIKHVALG--GKKMKLAIWDTAGQE 72 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~ 72 (154)
...+|+++|+.++|||||+.+|+........ ...+.+.......+. .....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4589999999999999999999854421000 011222222222222 455688999999999
Q ss_pred cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.|.......++.+|++++|+|+.+.-.... .. ....+.. .+.|+++|.||+|+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~-~l~~~~~----~~~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EE-HLKILRE----LGIPIIVVLNKMDLIE 136 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HH-HHHHHHH----TT-SEEEEEETCTSSH
T ss_pred ceeecccceecccccceeeeeccccccccc-cc-ccccccc----cccceEEeeeeccchh
Confidence 988888888999999999999987644322 22 2333333 3778999999999983
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.73 E-value=4.3e-17 Score=107.27 Aligned_cols=113 Identities=24% Similarity=0.218 Sum_probs=76.7
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEE--EEEECCeEEEEEEEeCCCcccccc-------cccccccCccEE
Q 031704 18 LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRT-------LTSSYYRGAQGI 88 (154)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~~~ 88 (154)
++|++|+|||||++++.+..........+.+.... ..... ....+.+||+||...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 57999999999999999876532222222222222 22222 145789999999765543 333467889999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
++|+|+.+........ |.... ...+.|+++|+||+|+..+...
T Consensus 80 l~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~ 122 (163)
T cd00880 80 LFVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEE 122 (163)
T ss_pred EEEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhH
Confidence 9999999887765553 22222 2357899999999999766544
No 193
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=7.6e-17 Score=107.12 Aligned_cols=122 Identities=32% Similarity=0.559 Sum_probs=106.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...++++++|..|.||||+.++.+.+++ ..+.++.|.......+.-+...+++..|||.|++.+-.....++-++.+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4679999999999999999999999999 678888887776666655555789999999999999999999888899999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++||++.+-+..+... |...+.+.+. ++||++.|||.|..+..
T Consensus 88 imFdVtsr~t~~n~~r-whrd~~rv~~--NiPiv~cGNKvDi~~r~ 130 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPR-WHRDLVRVRE--NIPIVLCGNKVDIKARK 130 (216)
T ss_pred EEeeeeehhhhhcchH-HHHHHHHHhc--CCCeeeeccceeccccc
Confidence 9999999999999999 8888877644 48999999999986544
No 194
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.72 E-value=1.3e-16 Score=125.17 Aligned_cols=113 Identities=24% Similarity=0.303 Sum_probs=81.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC---C-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT---F-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
+.|+++|..++|||||+++|.+.. + .+.....+.+.....+..++ ..+.+||+||++.|.......+..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 368999999999999999999743 2 12233344444444455544 78899999999999888888889999999
Q ss_pred EEEECCCc---chHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCchhh
Q 031704 90 MVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPWRL 137 (154)
Q Consensus 90 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~~~ 137 (154)
+|+|+++. ++.+.+ ..+.. .+.| +++|+||+|+.++...
T Consensus 79 LVVDa~~G~~~qT~ehl-----~il~~----lgi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-----AVLDL----LGIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred EEEECCCCCcHHHHHHH-----HHHHH----cCCCeEEEEEECCCCCCHHHH
Confidence 99999873 333222 22222 2456 9999999999876543
No 195
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.72 E-value=6.3e-17 Score=128.78 Aligned_cols=119 Identities=17% Similarity=0.170 Sum_probs=84.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCcce--eeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
..+.++|+++|..++|||||++++....+.. .....+ .......+..++....+.||||||++.|..++..+++.+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3466899999999999999999999877632 111111 1222223333445678999999999999999988999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++++|+|+++......... |. .+ ...+.|+++++||+|+...
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~-~~----k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-IN-YI----QAANVPIIVAINKIDKANA 362 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HH-HH----HhcCceEEEEEECCCcccc
Confidence 9999999987533222222 21 12 2346899999999999754
No 196
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.72 E-value=3.4e-17 Score=124.57 Aligned_cols=126 Identities=25% Similarity=0.310 Sum_probs=99.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+.+||+++|..|+||||||-+++..++++..|..-... .....+....+...++|++..++-+......++++|++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc-ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 355999999999999999999999999955554432111 1223334455668899999777766667778999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCC-CCCcEEEEEeCCCCCCchhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTN-QDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+|+++++.+++.+..+|+..++...+. .+.|+|+||||+|+......
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 999999999999999999999986433 46799999999999755544
No 197
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.71 E-value=1.8e-17 Score=111.59 Aligned_cols=122 Identities=22% Similarity=0.263 Sum_probs=76.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCccccccccccc---ccCccE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSY---YRGAQG 87 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~---~~~~~~ 87 (154)
+...|+++|+.|+|||+|+.+|..+.......... ... .+.+ ......+.++|+|||++.+...... +..+.+
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e--~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME--NNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SS--EEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc--CCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 34679999999999999999999986632222221 111 1111 1233367889999999988765554 778999
Q ss_pred EEEEEECCC-cchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchh
Q 031704 88 IIMVYDVTR-RDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 88 ~v~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+|||+|.+. ........++++..+.... .....|++|++||.|+..++.
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999999874 4456666776666665542 345779999999999987654
No 198
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.71 E-value=1.6e-16 Score=127.36 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=83.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEE--EEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
..+.+.|+++|..++|||||+++|...++... ...+++.... .+..++ ..++||||||++.|..++...++.+|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~-e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG-EAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccc-ccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCE
Confidence 45778999999999999999999988776321 1223333333 333333 578999999999999999888999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++|+|+++...-..... |. .. ...+.|++|++||+|+...
T Consensus 364 aILVVdAddGv~~qT~e~-i~-~a----~~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEA-IN-HA----KAAGVPIIVAINKIDKPGA 404 (787)
T ss_pred EEEEEECCCCCCHhHHHH-HH-HH----HhcCCcEEEEEECcccccc
Confidence 999999987432222211 21 11 2346899999999999653
No 199
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.71 E-value=1.5e-16 Score=109.23 Aligned_cols=117 Identities=18% Similarity=0.093 Sum_probs=80.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (154)
.++|+++|..++|||||+++|+.... .......+.+.......+......+.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 37999999999999999999986411 011113445555555555555667889999999888777
Q ss_pred ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW 135 (154)
Q Consensus 78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~ 135 (154)
....+..+|++++|+|+...-.- .... ....+.. .+.| ++++.||+|+..+.
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~-~~~~-~~~~~~~----~~~~~iIvviNK~D~~~~~ 134 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMP-QTRE-HLLLARQ----VGVPYIVVFLNKADMVDDE 134 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcH-HHHH-HHHHHHH----cCCCcEEEEEeCCCCCCcH
Confidence 77778899999999998864322 2222 2223333 2455 78999999997433
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.71 E-value=1e-16 Score=128.61 Aligned_cols=116 Identities=23% Similarity=0.217 Sum_probs=81.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRTL-T 78 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~ 78 (154)
..+||+++|.+|+|||||+|++++.+. ....+.++.+.....+.+++.. +.+|||||... +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999999875 2334444444444455566554 56899999531 2211 1
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
..+++++|++++|+|+++..+...... + ..+.. .+.|+++|+||+|+.++.
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~-~~~~~----~~~piIiV~NK~DL~~~~ 577 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-M-SMAVD----AGRALVLVFNKWDLMDEF 577 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCEEEEEEchhcCChh
Confidence 234688999999999999877766543 3 23322 368999999999997543
No 201
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=6.3e-16 Score=111.45 Aligned_cols=119 Identities=19% Similarity=0.292 Sum_probs=76.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-----
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR----- 75 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----- 75 (154)
-.++|+++|.+|+|||||+|++++..... ..++.+.......+..++..+.+.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 35899999999999999999999987622 22333444445555667778899999999932211
Q ss_pred ---------------------cccccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 76 ---------------------TLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 76 ---------------------~~~~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
......+. ++|+++++++.+... +.... .+.++... ...|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D---~~~lk~l~--~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD---IEFMKRLS--KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH---HHHHHHHh--ccCCEEEEEECCCcC
Confidence 01112233 468888888876522 11111 12222221 257999999999997
Q ss_pred Cchh
Q 031704 133 CPWR 136 (154)
Q Consensus 133 ~~~~ 136 (154)
.+.+
T Consensus 157 ~~~e 160 (276)
T cd01850 157 TPEE 160 (276)
T ss_pred CHHH
Confidence 6443
No 202
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.71 E-value=7.1e-17 Score=111.68 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=72.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEE--EEC---------------------------C----
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHV--ALG---------------------------G---- 58 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~--~~~---------------------------~---- 58 (154)
++|+++|+.++|||||+..+.+... .......+.+...... ... +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999975421 0111111111111100 000 1
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
....+.||||||++.+.......+..+|++++|+|++++.........|. .+... ...|+++|+||+|+.++.
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~~~~---~~~~iiivvNK~Dl~~~~ 153 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-ALEIM---GLKHIIIVQNKIDLVKEE 153 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HHHHc---CCCcEEEEEEchhccCHH
Confidence 12578999999999887777777888999999999987421111112121 22221 224789999999997643
No 203
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=1.3e-16 Score=114.59 Aligned_cols=115 Identities=18% Similarity=0.150 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--C---------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF--E---------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (154)
+|+++|++++|||||+++++...- . ......+.+.......+.....+++++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211 0 01112233444333333334567889999999888888
Q ss_pred ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+...++.+|++++|+|+.+...-.. .. +.+.+.. .+.|++++.||+|+....
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~-~~~~~~~----~~~p~ivviNK~D~~~a~ 132 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ET-VWRQADR----YNVPRIAFVNKMDRTGAD 132 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HH-HHHHHHH----cCCCEEEEEECCCCCCCC
Confidence 8888999999999999987543222 22 2223332 367899999999997543
No 204
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.71 E-value=1.3e-16 Score=100.93 Aligned_cols=105 Identities=25% Similarity=0.226 Sum_probs=68.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------RTLTSSYYR 83 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 83 (154)
+|+++|.+|+|||||+|+|++.+. ....+..+.......+..++..+ .++||||-... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998654 22223222233334555666554 58999994321 111333357
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
.+|++++|+|..++.. +.... +.+.+ . .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~-~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKN-ILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHH-HHHHH----H-TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHH-HHHHH----h-cCCCEEEEEcC
Confidence 8999999999777322 22222 23333 2 57899999998
No 205
>PRK10218 GTP-binding protein; Provisional
Probab=99.71 E-value=2.4e-16 Score=123.71 Aligned_cols=118 Identities=21% Similarity=0.221 Sum_probs=89.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC--CCCC-------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSD--TFEE-------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (154)
...+|+++|+.++|||||+++|+.. .+.. .....+++.......+....+.+++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 4579999999999999999999963 2211 123456677776666666778999999999999998
Q ss_pred cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.+..+++.+|++++|+|+++..... ... +...+.. .+.|.++++||+|+..++
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~-~l~~a~~----~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRF-VTKKAFA----YGLKPIVVINKVDRPGAR 136 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHH-HHHHHHH----cCCCEEEEEECcCCCCCc
Confidence 8999999999999999998754322 222 2223222 367889999999997554
No 206
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=8.7e-17 Score=124.66 Aligned_cols=119 Identities=17% Similarity=0.162 Sum_probs=84.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc--CCCC-------------------CCCCcceeeeEEEEEEECCeEEEEEEEeCC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTS--DTFE-------------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~--~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (154)
.++.+|+++|+.++|||||+++|+. +... ......+++.......+....+.+++||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4567999999999999999999973 1100 001122444555555555556789999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+.+|......+++.+|++++|+|+++.... .... +.... ...+.|+++++||+|+....
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~----~~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRK-LMEVC----RLRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHH-HHHHH----HhcCCCEEEEEECCcccccC
Confidence 9999888777789999999999999875422 2223 22332 33478999999999997544
No 207
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.70 E-value=8.8e-17 Score=107.09 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=66.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc----ccccccCccEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----TSSYYRGAQGIIM 90 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----~~~~~~~~~~~v~ 90 (154)
+|+++|.+++|||||+|++.+... ...++.+ ..+... .+|||||....... ....++++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999999876432 1112211 122222 26999996322211 1223688999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+|+++..++.. . |...+ ..+.|+++++||+|+.+..
T Consensus 71 v~d~~~~~s~~~--~-~~~~~-----~~~~~ii~v~nK~Dl~~~~ 107 (158)
T PRK15467 71 VHGANDPESRLP--A-GLLDI-----GVSKRQIAVISKTDMPDAD 107 (158)
T ss_pred EEeCCCcccccC--H-HHHhc-----cCCCCeEEEEEccccCccc
Confidence 999998876532 2 33332 1356899999999996543
No 208
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.69 E-value=2.8e-16 Score=119.67 Aligned_cols=121 Identities=17% Similarity=0.121 Sum_probs=81.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--CC----------------------------CCCCcceeeeEEEEEEECCeE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FE----------------------------ELSPTIGVDFKIKHVALGGKK 60 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (154)
...++|+++|+.++|||||+.+|+... .. ......+.+.......+....
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 356899999999999999999998521 10 000122444555555555566
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+.+.+|||||++.|.......++.+|++++|+|+++.+++......+...+... ....|+++++||+|+.+
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAINKMDSVN 155 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEEChhccC
Confidence 789999999998887666666789999999999998754321111011111111 12357999999999975
No 209
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=1.9e-16 Score=118.08 Aligned_cols=123 Identities=24% Similarity=0.232 Sum_probs=85.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCc----------cccccc-c
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQ----------ERFRTL-T 78 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~----------~~~~~~-~ 78 (154)
..+||+++|.|++|||||+|++++++-.-..+..|.|.. ...+..+++ ++.++||.|. +.|+-. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 579999999999999999999999987545555554443 444555555 5667899992 222221 2
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
...+..+|++++|+|++.+-+-.+. .+..+......++++|.||+|+.++++...+++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~------~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~ 312 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL------RIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEF 312 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH------HHHHHHHHcCCCeEEEEEccccCCchhhHHHHH
Confidence 3447789999999999987654333 222222345788999999999987754444333
No 210
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.69 E-value=2.7e-16 Score=121.97 Aligned_cols=119 Identities=18% Similarity=0.182 Sum_probs=84.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--CCC-------------------CCCCcceeeeEEEEEEECCeEEEEEEEeCC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TFE-------------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (154)
.+..+|+++|++++|||||+++++.. ... ......+++.......+....+.+++||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 45679999999999999999998631 110 001123455555556666667889999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+..|.......++.+|++++|+|+++.-. ..... +.+..+ ..+.|+++++||+|+....
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~-l~~~~~----~~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRK-LMEVTR----LRDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHH-HHHHHH----hcCCCEEEEEECccccCCC
Confidence 999888777778899999999999987421 22223 333333 2468999999999996443
No 211
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.68 E-value=4.5e-16 Score=111.16 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=95.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cc---ccccccccCcc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FR---TLTSSYYRGAQ 86 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~~~~~ 86 (154)
.+-++|-|++|||||++.+...+. ...++.++.......+..++ ...+.+-|.||.-+ -+ .....++.+|+
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 456799999999999999998877 55566666555555443332 33488899999432 12 22455577899
Q ss_pred EEEEEEECCCc---chHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhcc-ccccC
Q 031704 87 GIIMVYDVTRR---DTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSK-FYCSS 154 (154)
Q Consensus 87 ~~v~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~S 154 (154)
..++|+|++.. ..++.+..+|.+ +..+ ....+.|.++|+||+|+.+.++..+.++.+..... ++|+|
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~lL~~E-Le~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvs 348 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQLLIEE-LELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVS 348 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHHHHHH-HHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEee
Confidence 99999999988 777777774443 3333 24567899999999999766665556665544433 56655
No 212
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.68 E-value=3.5e-16 Score=122.76 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=85.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC--CCCCC-------------CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD--TFEEL-------------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT 78 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (154)
.+|+++|+.++|||||+++|+.. .+... ....|++.......+....+.+++|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 48999999999999999999863 22111 1233555555555454556789999999999999888
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
..+++.+|++++|+|+.+.. ...... |...+.. .+.|+++|+||+|+.+++
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~-~l~~a~~----~~ip~IVviNKiD~~~a~ 132 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRF-VLKKALE----LGLKPIVVINKIDRPSAR 132 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHH-HHHHHHH----CCCCEEEEEECCCCCCcC
Confidence 88999999999999998743 233333 4444443 367899999999997544
No 213
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.1e-16 Score=104.26 Aligned_cols=119 Identities=22% Similarity=0.337 Sum_probs=95.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+.-|++++|-.|+|||||++.|...+.....||.+.+ +.+..+. .+.++.+|..|+...+..|..++..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 3458999999999999999999988887777776533 3344443 35678899999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+|+.|.+.+.+.+..+...+... .-...|+++.+||+|...+.
T Consensus 95 vda~d~er~~es~~eld~ll~~e-~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDE-SLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHH-HHhcCcceeecccccCCCcc
Confidence 99999999988877444333332 44678999999999997554
No 214
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.68 E-value=4.7e-16 Score=108.87 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=75.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----cccccccCccEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRT-----LTSSYYRGAQGI 88 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~~~~ 88 (154)
||+++|++++||||+.+.++.+-.+......+.|.....-.+ ....+.+++||+||+..+-. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999998766544444444333333322 23445899999999875433 345568999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCch
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+|+|+.+.+-.+++.. +...+... ..+++..+-++.+|.|+..+.
T Consensus 81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 99999996555555544 43333322 136788999999999997543
No 215
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.5e-15 Score=100.78 Aligned_cols=124 Identities=22% Similarity=0.274 Sum_probs=87.7
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CCc---ceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--------SPT---IGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~--------~~~---~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (154)
...-...||++.|+.++||||++..+..+..... ... ++..........+ ....+.++|||||++|+.
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHH
Confidence 3445678999999999999999999987764100 001 1111111122222 234688999999999999
Q ss_pred cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+|..+.+.+++++++.|.+.+..+ .... ..+.+... ..+|++|.+||.||.+.+..
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~---~~ip~vVa~NK~DL~~a~pp 139 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSR---NPIPVVVAINKQDLFDALPP 139 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhc---cCCCEEEEeeccccCCCCCH
Confidence 999999999999999999998887 3333 33333322 22999999999999877654
No 216
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.67 E-value=4.9e-16 Score=111.75 Aligned_cols=114 Identities=22% Similarity=0.268 Sum_probs=77.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC-CCC------C----------cceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELS------P----------TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~-~~~------~----------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (154)
+|+++|++|+|||||+++++..... ... . ..+.+.......+....+.+++|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999753321 000 0 0111222222222223467899999999888777
Q ss_pred ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
...+++.+|++++|+|+++....... ..|. .+. ..+.|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~-~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWE-FAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHH-HHH----HcCCCEEEEEECCccCCC
Confidence 88889999999999999886554322 2233 222 236799999999999755
No 217
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.67 E-value=5.5e-16 Score=110.31 Aligned_cols=129 Identities=22% Similarity=0.230 Sum_probs=88.4
Q ss_pred CcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------
Q 031704 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------- 73 (154)
Q Consensus 4 ~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------- 73 (154)
+++++...+.++++++|.||+|||||.|.+++.+....+.....|-......+......+.|+||||.-.
T Consensus 63 srde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~ 142 (379)
T KOG1423|consen 63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLM 142 (379)
T ss_pred CCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHH
Confidence 3445667889999999999999999999999999854444443344444444455566899999999211
Q ss_pred --ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 74 --FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 74 --~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+-+.....+..+|++++++|+++........ .+..+..+ ..+|=++|+||.|....+.+
T Consensus 143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~ 203 (379)
T KOG1423|consen 143 MSVLQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRL 203 (379)
T ss_pred HHhhhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhH
Confidence 1122344567899999999999744332221 22233433 46788999999998766654
No 218
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.3e-17 Score=106.90 Aligned_cols=121 Identities=29% Similarity=0.482 Sum_probs=93.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (154)
..+.++++|..++|||||+......-. ....++.| .....+.++ ...+.+||..|++..+++|..++.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVC--NAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeec--cceeEEEEcCChHHHHHHHHHHHH
Confidence 458899999999999999998754322 12234444 333344444 447889999999999999999999
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.+|++++++|+++++.|+.....+...+..- ...+.|+++.+||.|+.++..+
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E-~leg~p~L~lankqd~q~~~~~ 144 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENE-KLEGAPVLVLANKQDLQNAMEA 144 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHH-HhcCCchhhhcchhhhhhhhhH
Confidence 9999999999999999988877444444433 5678999999999999877654
No 219
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=103.11 Aligned_cols=122 Identities=22% Similarity=0.247 Sum_probs=91.5
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFR 75 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~ 75 (154)
+-+.+...-|+++|.+++|||||||++++++- +..+.+.|.|.....+.+++. +.++|.|| .+.+.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence 34455678999999999999999999999775 788889998999888888775 67889999 33445
Q ss_pred ccccccccC---ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 76 TLTSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 76 ~~~~~~~~~---~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.+...|++. -.++++++|+..+-.-.+. ..++.+.. .++|+++++||+|.....+.
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~----~~i~~~vv~tK~DKi~~~~~ 153 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLE----LGIPVIVVLTKADKLKKSER 153 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHH----cCCCeEEEEEccccCChhHH
Confidence 555556543 4788899998765443222 23444444 48999999999999876443
No 220
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.67 E-value=2.6e-15 Score=105.88 Aligned_cols=82 Identities=26% Similarity=0.253 Sum_probs=58.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCcc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYRGAQ 86 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 86 (154)
+++++|.+|+|||||++++.+... ....+..+.+.....+.+++ ..+++||+||..... .....+++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998764 23333333334444444444 578899999964322 12344688999
Q ss_pred EEEEEEECCCcc
Q 031704 87 GIIMVYDVTRRD 98 (154)
Q Consensus 87 ~~v~v~d~~~~~ 98 (154)
++++|+|++++.
T Consensus 80 ~il~V~D~t~~~ 91 (233)
T cd01896 80 LILMVLDATKPE 91 (233)
T ss_pred EEEEEecCCcch
Confidence 999999998755
No 221
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4.6e-16 Score=116.38 Aligned_cols=118 Identities=21% Similarity=0.200 Sum_probs=84.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 83 (154)
..+|++++|.||+|||||+|.|++.+-+-.+.-.|.|-...+-.++-..+.+.++||.|..+-... ....+.
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~ 295 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIE 295 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHHH
Confidence 458999999999999999999999988655555555555555444445577888999995432222 233477
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++|.+++++|.+.+.+-....-++ ....+.|+++|.||.||..+..
T Consensus 296 ~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 296 EADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred hCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccc
Confidence 899999999999863333322212 1456789999999999976544
No 222
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.67 E-value=6.8e-16 Score=121.34 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=73.2
Q ss_pred cCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 031704 20 GDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL------TSSYY--RGAQGIIM 90 (154)
Q Consensus 20 G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~v~ 90 (154)
|.+|+|||||+|++.+... ....+..+.+.....+..++ .++++|||||..++... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876 34445444444444555554 35789999998776543 22232 36899999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|+|+++.+.. .. +..++.+ .+.|+++|+||+|+.+++.
T Consensus 79 VvDat~ler~---l~-l~~ql~~----~~~PiIIVlNK~Dl~~~~~ 116 (591)
T TIGR00437 79 VVDASNLERN---LY-LTLQLLE----LGIPMILALNLVDEAEKKG 116 (591)
T ss_pred EecCCcchhh---HH-HHHHHHh----cCCCEEEEEehhHHHHhCC
Confidence 9999875432 22 2223322 3689999999999964443
No 223
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.66 E-value=5.9e-16 Score=121.20 Aligned_cols=112 Identities=22% Similarity=0.202 Sum_probs=77.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CcceeeeEEEEE------------EECCeEEEEEEEeCCCccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----PTIGVDFKIKHV------------ALGGKKMKLAIWDTAGQERFR 75 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~~ 75 (154)
.+-|+++|.+++|||||++++.+..+.... ++.+.+...... .+......+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 457999999999999999999988763221 122221111100 000011238899999999999
Q ss_pred ccccccccCccEEEEEEECCCc---chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 76 TLTSSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 76 ~~~~~~~~~~~~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.++..+++.+|++++|+|+++. .+++.+. .++ ..+.|+++++||+|+..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~----~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH----HcCCCEEEEEECCCccc
Confidence 9888889999999999999873 3333322 222 23679999999999964
No 224
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.66 E-value=8.2e-16 Score=105.91 Aligned_cols=111 Identities=23% Similarity=0.265 Sum_probs=69.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCC-CCCccee---eeEEEEEEECCeEEEEEEEeCCCcccccccc-----ccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGV---DFKIKHVALGGKKMKLAIWDTAGQERFRTLT-----SSYYR 83 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----~~~~~ 83 (154)
++||+++|.+|+|||||+|.+++..... .....+. +.....+... ....+.+|||||........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 3799999999999999999999865521 2222221 1111112111 12368999999965322222 22256
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
++|+++++.+ . .+......|.+.+... +.|+++|+||+|+.
T Consensus 80 ~~d~~l~v~~-~---~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~ 120 (197)
T cd04104 80 EYDFFIIISS-T---RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRD 120 (197)
T ss_pred CcCEEEEEeC-C---CCCHHHHHHHHHHHHh----CCCEEEEEecccch
Confidence 7898888743 2 2344444466666654 57899999999994
No 225
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.65 E-value=2.2e-15 Score=113.77 Aligned_cols=120 Identities=18% Similarity=0.095 Sum_probs=81.8
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-------C--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-------E--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
....++|+++|..++|||||+++|++... . ......|.|.....+.+......+.+|||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 45679999999999999999999974210 0 11112455555566666656678899999999988
Q ss_pred cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcE-EEEEeCCCCCCch
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKVCPW 135 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~Dl~~~~ 135 (154)
..........+|++++|+|+.+...-.. .. ....+... ++|. ++++||+|+.++.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e-~l~~~~~~----gi~~iIvvvNK~Dl~~~~ 144 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-RE-HILLARQV----GVPYIVVFLNKCDMVDDE 144 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHHHc----CCCEEEEEEEecccCCHH
Confidence 7666666778899999999987432221 22 22233322 4554 4689999997644
No 226
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=7.9e-16 Score=123.29 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=83.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC--------------CCCC---CcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--------------EELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
+...+|+++|..++|||||+++|+...- .... ...+.+.......+....+.+++|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 3568999999999999999999985321 0000 0122233322223333457899999999999
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+......+++.+|++++|+|+++......... |. .+. ..+.|+++++||+|+...+
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WR-QAD----RYGIPRLIFINKMDRVGAD 141 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----hcCCCEEEEEECCCCCCCC
Confidence 88888888999999999999998766554333 43 222 2368999999999997653
No 227
>COG2262 HflX GTPases [General function prediction only]
Probab=99.65 E-value=1.6e-15 Score=111.82 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=92.7
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc---------ccccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ---------ERFRTLT 78 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~ 78 (154)
.....+.|+++|-+|+|||||+|++.+... .....+.+.+..++.+.+.+ ...+.+-||.|- +.|+...
T Consensus 188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred cccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH
Confidence 345678999999999999999999998776 45556666677777777765 335667799993 2333332
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.. ...+|.+++|+|++++...+.+.. ....+... ...++|+++|.||+|+..+..
T Consensus 267 EE-~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el-~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 267 EE-VKEADLLLHVVDASDPEILEKLEA-VEDVLAEI-GADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred HH-hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHc-CCCCCCEEEEEecccccCchh
Confidence 22 457999999999999976666666 66666665 556699999999999875554
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.65 E-value=2.5e-15 Score=113.89 Aligned_cols=121 Identities=17% Similarity=0.098 Sum_probs=83.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
....++|+++|.+++|||||+++|++..- .......|.+.......+..+...+.+.||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45669999999999999999999986421 011112344555444445445567889999999887
Q ss_pred cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCchh
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPWR 136 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~~ 136 (154)
.......+..+|++++|+|+...-. ..... ....+.. .+.| ++++.||+|+.++.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~-~~~~~~~----~g~~~iIvvvNK~D~~~~~~ 145 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPM-PQTKE-HILLAKQ----VGVPNIVVFLNKEDQVDDEE 145 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCc-HHHHH-HHHHHHH----cCCCEEEEEEEccCCCCHHH
Confidence 7767777889999999999886432 22222 2233332 2567 778999999976443
No 229
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.64 E-value=9.3e-16 Score=107.29 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC------------------------------CCCCCcceeeeEEEEEEECCeEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKKMKLA 64 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (154)
+|+++|+.++|||||+.+|+...- .......+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999863211 00011223344444444444567899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCCcch------HHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT------FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+|||||+..+.......++.+|++++|+|+++... .......| ..... ....|+++++||+|+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART---LGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH---cCCCeEEEEEEccccc
Confidence 99999998777666667788999999999988421 11112212 12222 1236899999999997
No 230
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.64 E-value=2.5e-15 Score=100.01 Aligned_cols=112 Identities=23% Similarity=0.285 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRTLTSSYYR 83 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 83 (154)
.|+++|.+|+|||||++.+.++.. ....++.+.+.....+..++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 378999999999999999996555 55555555555544444443 788999999432 2333333343
Q ss_pred ---CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 84 ---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 84 ---~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
..+++++++|..+..+..... ..+.+... ..|+++|+||+|+....
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~~----~~~vi~v~nK~D~~~~~ 126 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLEEL----GIPFLVVLTKADKLKKS 126 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHH--HHHHHHHc----CCCEEEEEEchhcCChH
Confidence 357889999987653322211 12223222 47899999999996443
No 231
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.64 E-value=3e-15 Score=119.93 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=82.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-----CCCC------------cceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-----ELSP------------TIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
+...+|+++|.+++|||||+++|+...-. .... ..+++.......+.....++.+|||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 45679999999999999999999742210 0000 123333333333333456889999999988
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+.......++.+|++++|+|+.+....... ..|. .+.. .+.|+++++||+|+..+.
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~-~~~~----~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWR-QANR----YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHH-HHHH----cCCCEEEEEECCCCCCCC
Confidence 877778889999999999999886544332 2132 3332 367899999999998654
No 232
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.63 E-value=2e-15 Score=114.29 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=75.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCcceeeeEEEE----------------EEE----CC------eEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIGVDFKIKH----------------VAL----GG------KKMKL 63 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~----------------~~~----~~------~~~~~ 63 (154)
..++|+++|..++|||||+++|.+...... ....+.+..... +.. ++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 468999999999999999999975422110 001111111110 000 11 13578
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 64 ~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.+||+||+++|...+......+|++++|+|+++......... ....+... ...|+++++||+|+.++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~~---gi~~iIVvvNK~Dl~~~~ 150 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEII---GIKNIVIVQNKIDLVSKE 150 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHHc---CCCeEEEEEEccccCCHH
Confidence 999999999998877777888999999999986431112222 11222222 224689999999997654
No 233
>PRK12735 elongation factor Tu; Reviewed
Probab=99.63 E-value=7e-15 Score=111.05 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=81.6
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcC-------CCC--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD-------TFE--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
.....++|+++|.+++|||||+++|++. ++. ......|.|.......+......+.++||||+.+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3356699999999999999999999862 110 1112345555555555555556789999999988
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEE-EEEeCCCCCCc
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKVCP 134 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~Dl~~~ 134 (154)
|.......+..+|++++|+|+.+... ..... +...+.. .++|.+ ++.||+|+.+.
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e-~l~~~~~----~gi~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTRE-HILLARQ----VGVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCc-hhHHH-HHHHHHH----cCCCeEEEEEEecCCcch
Confidence 87666677888999999999987432 22222 2223332 356655 67999999743
No 234
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.63 E-value=4.4e-15 Score=116.57 Aligned_cols=112 Identities=22% Similarity=0.269 Sum_probs=76.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----cceeeeEEEEEE--ECCeEE----------EEEEEeCCCcccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-----TIGVDFKIKHVA--LGGKKM----------KLAIWDTAGQERF 74 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~----------~~~i~D~~g~~~~ 74 (154)
+.+.|+++|++++|||||++++.+.......+ +.|.++...... ..+..+ .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 45689999999999999999998765432222 222111111100 001111 2689999999999
Q ss_pred cccccccccCccEEEEEEECCC---cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
..++...++.+|++++|+|+++ +++++.+. .+. ..+.|+++++||+|+.
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~----~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILK----RRKTPFVVAANKIDRI 136 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHH----HcCCCEEEEEECcCCc
Confidence 9888888889999999999987 44443332 222 2367899999999985
No 235
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.62 E-value=3.6e-15 Score=114.72 Aligned_cols=121 Identities=21% Similarity=0.147 Sum_probs=79.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC------------CC------------------CcceeeeEEEEEEEC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE------------LS------------------PTIGVDFKIKHVALG 57 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~------------~~------------------~~~~~~~~~~~~~~~ 57 (154)
....++|+++|+.++|||||+++|+...- .. .. ...|++.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35669999999999999999999975422 00 00 012334444444444
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.....+.++||||++.|.......+..+|++++|+|+...-.-..... +. .+... . ..++++++||+|+.+.+
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~-l~~~l-g--~~~iIvvvNKiD~~~~~ 176 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SF-IATLL-G--IKHLVVAVNKMDLVDYS 176 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HH-HHHHh-C--CCceEEEEEeeccccch
Confidence 455678999999998886666666789999999999876432111111 11 22222 1 24789999999997543
No 236
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.62 E-value=1.1e-14 Score=105.29 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=75.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcce--eeeEEEEEEECCeEEEEEEEeCCCccccccc-------ccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------TSS 80 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~ 80 (154)
....++|+++|.+|+||||++|++++.+........+ .+........+ ...+.++||||..+.... ...
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 3567899999999999999999999887532222222 22222222233 457899999996543211 111
Q ss_pred cc--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 81 YY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 81 ~~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
++ ...|++++|..++... +........+.+.... ...-.+.|||.|++|...++..+.+++
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~f 176 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDF 176 (313)
T ss_pred HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHH
Confidence 11 2589999996655321 2222111333333332 223357899999999875544444333
No 237
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.62 E-value=1e-14 Score=104.78 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=87.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc-----cccccc---cccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE-----RFRTLT---SSYY 82 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~---~~~~ 82 (154)
..+.|+|.|.||+|||||++.+.+.+. ...+|.++-..+..++..+ ...++++||||-- +.+.+- ..++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~--~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERG--YLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecC--CceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 457899999999999999999999988 6777877766666666544 4467888999921 112111 1122
Q ss_pred c-CccEEEEEEECCC--cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 83 R-GAQGIIMVYDVTR--RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 83 ~-~~~~~v~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+ -.++++|++|.+. .-+.+.... +++.+... -+.|+++|.||.|+.+++.+...+
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~ 302 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKEL---FKAPIVVVINKIDIADEEKLEEIE 302 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHh---cCCCeEEEEecccccchhHHHHHH
Confidence 2 2588999999874 556677666 44455543 238999999999998777665443
No 238
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.61 E-value=8.9e-15 Score=107.11 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=55.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL---------------------GG-KKMKLAIWDTAGQ- 71 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~i~D~~g~- 71 (154)
|+++|.+++|||||+|++++... ...+|.++.+.......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57899999999999999998876 333344333222222221 22 3468999999996
Q ss_pred ---ccccccccc---cccCccEEEEEEECCC
Q 031704 72 ---ERFRTLTSS---YYRGAQGIIMVYDVTR 96 (154)
Q Consensus 72 ---~~~~~~~~~---~~~~~~~~v~v~d~~~ 96 (154)
+....+... .++++|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 334443333 4899999999999973
No 239
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=1.7e-15 Score=96.66 Aligned_cols=118 Identities=25% Similarity=0.394 Sum_probs=98.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
++..+|+++|..|+||||++.++.-++.....|+.+.+..... .+..++.+||..|+...+..|+.++.+.|++++
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 3678999999999999999999999888778888886554333 366789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|.|.+|.+........+...+.+- +..+.-+++++||.|...
T Consensus 92 VVDssd~dris~a~~el~~mL~E~-eLq~a~llv~anKqD~~~ 133 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEE-ELQHAKLLVFANKQDYSG 133 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccH-hhcCceEEEEeccccchh
Confidence 999999988877766566666554 444577899999999853
No 240
>PRK12736 elongation factor Tu; Reviewed
Probab=99.59 E-value=1.5e-14 Score=109.26 Aligned_cols=120 Identities=19% Similarity=0.097 Sum_probs=82.6
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-------C--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-------E--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
....++|+++|+.++|||||+++|++... . ......|.|.......+......+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 44569999999999999999999986311 0 11113455555555556555567889999999888
Q ss_pred cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW 135 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~ 135 (154)
.......+..+|++++|+|+.....-. ... +...+... +.| +++++||+|+.++.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~-t~~-~~~~~~~~----g~~~~IvviNK~D~~~~~ 144 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQ-TRE-HILLARQV----GVPYLVVFLNKVDLVDDE 144 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchh-HHH-HHHHHHHc----CCCEEEEEEEecCCcchH
Confidence 766666678899999999988643222 222 22233322 566 67899999997543
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.59 E-value=6.9e-15 Score=111.36 Aligned_cols=117 Identities=21% Similarity=0.151 Sum_probs=76.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC--CC------------------------------CCCcceeeeEEEEEEECCeEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF--EE------------------------------LSPTIGVDFKIKHVALGGKKM 61 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (154)
+||+++|+.++|||||+++|+...- .. .....+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 4899999999999999999974321 00 001123334444444444456
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++.++||||++.|.......+..+|++++|+|+.....-..... |. .+... ...++++++||+|+.+..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~-~~~~~---~~~~iivviNK~D~~~~~ 149 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SY-IASLL---GIRHVVLAVNKMDLVDYD 149 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HH-HHHHc---CCCcEEEEEEecccccch
Confidence 88999999999887666667889999999999876432221111 22 22222 124689999999997543
No 242
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.59 E-value=1.6e-17 Score=110.13 Aligned_cols=128 Identities=37% Similarity=0.641 Sum_probs=107.5
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCcccccccccccccCccE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
....+|+.|+|..++|||+++.+++-..+ ..+..+.+..+..+....+.. .+.+.+||..|++++..+..-+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 45678999999999999999999998877 566677887777777666654 4578999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhh---cCCCCCcEEEEEeCCCCCCchhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLY---STNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
..+|||+++..+|+.... |.+.+... +...+.|+++.+||||.......+
T Consensus 102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~ 154 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNE 154 (229)
T ss_pred eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhh
Confidence 999999999999999988 99877543 334567999999999997655444
No 243
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.59 E-value=1.2e-14 Score=99.97 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=70.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceee--eEEEEEEECCeEEEEEEEeCCCcccccc--------c---cc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRT--------L---TS 79 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~ 79 (154)
++|+++|.+|+||||++|.+++.+.. ......+.| ........++ ..+.++||||-.+... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 37999999999999999999988752 221111222 2222233333 4688899999543221 1 11
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCch
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~ 135 (154)
....+.|++++|+++.+ -+-+. .. ..+.++...+ ..-.++++|.|++|...+.
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~-~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQ-AVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HH-HHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 22456899999999887 22222 12 2333333212 2235789999999986543
No 244
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.59 E-value=7.5e-15 Score=111.25 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=73.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEE----EE------------E----EC--C----eEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIK----HV------------A----LG--G----KKMKL 63 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~----~~------------~----~~--~----~~~~~ 63 (154)
..++|+++|+.++|||||+.+|.+.-.. ......+.+.... .+ . .+ + ....+
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 87 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRV 87 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEE
Confidence 4489999999999999999998653111 1111112222211 00 0 00 0 03578
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 64 ~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.+|||||++.+..........+|++++|+|++++.........+ ..+... ...|+++|+||+|+.++..
T Consensus 88 ~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l~~~---~i~~iiVVlNK~Dl~~~~~ 156 (411)
T PRK04000 88 SFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MALDII---GIKNIVIVQNKIDLVSKER 156 (411)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHHHHc---CCCcEEEEEEeeccccchh
Confidence 99999999888766555566789999999999643111111111 122221 2246899999999976543
No 245
>PLN03126 Elongation factor Tu; Provisional
Probab=99.59 E-value=1.2e-14 Score=111.60 Aligned_cols=120 Identities=16% Similarity=0.066 Sum_probs=83.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
....++|+++|..++|||||+++|+.... .......+.+.......+..+...+.++|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45579999999999999999999985211 011222344554444445445567899999999988
Q ss_pred cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW 135 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~ 135 (154)
-......+..+|++++|+|+.+...- ...+ +...+... ++| ++++.||+|+.+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e-~~~~~~~~----gi~~iIvvvNK~Dl~~~~ 213 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMP-QTKE-HILLAKQV----GVPNMVVFLNKQDQVDDE 213 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcH-HHHH-HHHHHHHc----CCCeEEEEEecccccCHH
Confidence 77777778899999999998875432 2233 23333332 566 78899999997643
No 246
>PRK12739 elongation factor G; Reviewed
Probab=99.59 E-value=1.8e-14 Score=115.55 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=81.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC--C---CCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E---ELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (154)
.++..+|+++|..++|||||+++|+...- . ... ...+++.......+.-....++++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 34678999999999999999999975311 0 000 122333333333332244578999999998
Q ss_pred cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.+...+...++.+|++++|+|+.+....... . ....+. ..+.|++++.||+|+..+.
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCCCC
Confidence 8877788889999999999999875432222 2 222232 2367899999999998543
No 247
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.58 E-value=2.9e-14 Score=101.29 Aligned_cols=126 Identities=19% Similarity=0.179 Sum_probs=74.2
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-------c
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--T-L-------T 78 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~-------~ 78 (154)
.....++|+++|.+|+|||||+|++++..........+.+.....+........+.++||||-.... . . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4456699999999999999999999998763332222222222222222223568999999954331 0 0 1
Q ss_pred ccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCch
Q 031704 79 SSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 79 ~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~ 135 (154)
..++. ..|+++++..++... ++.......+.+....+ .--.++++|.||+|...+.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 22232 468888887666432 22221113334443222 2224799999999986544
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.58 E-value=1.2e-14 Score=115.54 Aligned_cols=118 Identities=20% Similarity=0.158 Sum_probs=76.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------------C------------------CcceeeeEEEEEEECC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--------------S------------------PTIGVDFKIKHVALGG 58 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~--------------~------------------~~~~~~~~~~~~~~~~ 58 (154)
...++|+++|++++|||||+++|+...-... . ...|.+.......+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 4558999999999999999999986432100 0 0112233333333333
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
...++.++||||++.+.......+..+|++++|+|+.....-..... + ..+... ...+++|++||+|+.+
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~-~~~~~~---~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-S-FIASLL---GIRHVVLAVNKMDLVD 171 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-H-HHHHHh---CCCeEEEEEEeccccc
Confidence 44578899999998876656666889999999999976432211111 1 122222 2357889999999974
No 249
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.57 E-value=1.2e-14 Score=94.13 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccccccccCccEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~~~~v~ 90 (154)
||+++|+.|||||||+++|.+... .+..+..+.+ .+ .++||||..- +.........++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 899999999999999999998765 3333322211 11 3479999532 22222223457999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC-Cchhhhh--hhhhhhhhccccccC
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV-CPWRLFL--SGFWHFLLSKFYCSS 154 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~-~~~~~~~--~~~~~~~~~~~~~~S 154 (154)
+.|++++.+.-. ..+. ..-+.|+|-|.||+|+. ++.++.. ..+..-|+.+++++|
T Consensus 70 l~dat~~~~~~p------P~fa---~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS 127 (143)
T PF10662_consen 70 LQDATEPRSVFP------PGFA---SMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVS 127 (143)
T ss_pred EecCCCCCccCC------chhh---cccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEE
Confidence 999998764311 1211 12357899999999998 3334433 445556777777776
No 250
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.56 E-value=2.9e-14 Score=114.70 Aligned_cols=117 Identities=19% Similarity=0.222 Sum_probs=80.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC---------------CCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD---------------TFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~---------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (154)
....||+++|+.++|||||+++|+.. ++.. ...+.........+.+.+..+.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45689999999999999999999753 1111 1112222222223345667789999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
..|.......++.+|++++|+|+.+.-..+.. ..|.. . ...+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~-~----~~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQ-A----LKENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHH-H----HHcCCCEEEEEEChhccc
Confidence 98887788889999999999998874322221 21222 1 123567889999999864
No 251
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.56 E-value=6.5e-14 Score=110.58 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEE--EEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
-|+++|..++|||||+++|.+.... ......|.|.... .+...+ ...+.+|||||++.|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 3789999999999999999864321 1111123333332 222222 2357899999999987777777889999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCchh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPWR 136 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~~ 136 (154)
|+|+++.-. ....+ ....+... +.| +++|+||+|+.++..
T Consensus 81 VVda~eg~~-~qT~e-hl~il~~l----gi~~iIVVlNKiDlv~~~~ 121 (614)
T PRK10512 81 VVACDDGVM-AQTRE-HLAILQLT----GNPMLTVALTKADRVDEAR 121 (614)
T ss_pred EEECCCCCc-HHHHH-HHHHHHHc----CCCeEEEEEECCccCCHHH
Confidence 999887422 11122 22233322 344 689999999976543
No 252
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.56 E-value=2.2e-14 Score=111.55 Aligned_cols=129 Identities=20% Similarity=0.189 Sum_probs=85.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--RG 84 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~ 84 (154)
.+++++|+||+|||||+|++++.+- ...+|. .|...++..+..+...+++.|+||.-.... ..++++ .+
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpG--vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPG--VTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCC--eeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 5799999999999999999999875 344444 445555544444444588899999433222 223333 35
Q ss_pred ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch--hhhhhhhhhhhhccccc
Q 031704 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW--RLFLSGFWHFLLSKFYC 152 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~ 152 (154)
.|+++.|.|+++.+..-.+.- ++.+. +.|++++.|++|+..++ +++.+.+.+...-.++|
T Consensus 82 ~D~ivnVvDAtnLeRnLyltl----QLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~ 143 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTL----QLLEL----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVP 143 (653)
T ss_pred CCEEEEEcccchHHHHHHHHH----HHHHc----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEE
Confidence 699999999999775544433 44443 77899999999996554 33445554444333344
No 253
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.55 E-value=5.5e-14 Score=98.57 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-------------ceeeeEE--------------------------EEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPT-------------IGVDFKI--------------------------KHVA 55 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~-------------~~~~~~~--------------------------~~~~ 55 (154)
||+++|+.++|||||++++..+.+...... .|.+... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 689999999999999999987655211100 1111000 0111
Q ss_pred ECCeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 56 LGGKKMKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.....+.++||||++.+.......+. .+|++++|+|+.....- .... +...+.. .++|+++|.||+|+..
T Consensus 81 --~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~-~d~~-~l~~l~~----~~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 --KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIG-MTKE-HLGLALA----LNIPVFVVVTKIDLAP 152 (224)
T ss_pred --eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcH-HHHH-HHHHHHH----cCCCEEEEEECccccC
Confidence 12346889999999888665555453 68999999998765432 2222 3334443 3678999999999975
Q ss_pred chh
Q 031704 134 PWR 136 (154)
Q Consensus 134 ~~~ 136 (154)
+.+
T Consensus 153 ~~~ 155 (224)
T cd04165 153 ANI 155 (224)
T ss_pred HHH
Confidence 543
No 254
>PLN03127 Elongation factor Tu; Provisional
Probab=99.55 E-value=8e-14 Score=106.50 Aligned_cols=120 Identities=18% Similarity=0.077 Sum_probs=81.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcC------CC---------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD------TF---------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
....++|+++|..++|||||+++|.+. .. .......|.|.......+.....++.++||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 446689999999999999999999732 10 011122445555555556555667899999999887
Q ss_pred cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCch
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCPW 135 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~~ 135 (154)
-......+..+|++++|+|+.+...- ...+ ....+.. .+.| ++++.||+|+.++.
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~-qt~e-~l~~~~~----~gip~iIvviNKiDlv~~~ 193 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMP-QTKE-HILLARQ----VGVPSLVVFLNKVDVVDDE 193 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCch-hHHH-HHHHHHH----cCCCeEEEEEEeeccCCHH
Confidence 66665666789999999998764322 1222 2223333 3567 57899999997543
No 255
>PRK00007 elongation factor G; Reviewed
Probab=99.55 E-value=7.6e-14 Score=111.91 Aligned_cols=120 Identities=17% Similarity=0.165 Sum_probs=80.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC---CC------------CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE---LS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~---~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (154)
.++..+|+++|.+++|||||+++|+...- .. .. ...+++.......+.-....++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 44578999999999999999999973211 00 00 122333333333332234578899999998
Q ss_pred cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.+.......++.+|++++|+|+...-....... |. .+.. .+.|++++.||+|+..+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~-~~~~----~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WR-QADK----YKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HH-HHHH----cCCCEEEEEECCCCCCCC
Confidence 777667777889999999999876543332221 32 2332 367889999999997544
No 256
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.54 E-value=2e-13 Score=102.79 Aligned_cols=82 Identities=24% Similarity=0.267 Sum_probs=56.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEE---------------------C-CeEEEEEEEeCCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL---------------------G-GKKMKLAIWDTAG 70 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~i~D~~g 70 (154)
++|.++|.+++|||||+|+|.+.+. ...++..+.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 5899999999999999999998877 333444443333322221 1 1236789999999
Q ss_pred cc----cccccc---cccccCccEEEEEEECC
Q 031704 71 QE----RFRTLT---SSYYRGAQGIIMVYDVT 95 (154)
Q Consensus 71 ~~----~~~~~~---~~~~~~~~~~v~v~d~~ 95 (154)
.. ....+. ...++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 223332 33388999999999997
No 257
>PRK00049 elongation factor Tu; Reviewed
Probab=99.53 E-value=1.2e-13 Score=104.33 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=81.8
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC---------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE---------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
....++|+++|..++|||||+++|++.... ......+.|.......+..+...+.++||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356699999999999999999999863110 01113445555555555445567889999999887
Q ss_pred cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEE-EEEeCCCCCCc
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKVCP 134 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~Dl~~~ 134 (154)
.......+..+|++++|+|+..... ..... +...+... +.|.+ ++.||+|+.+.
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~-~~~~~~~~----g~p~iiVvvNK~D~~~~ 143 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPM-PQTRE-HILLARQV----GVPYIVVFLNKCDMVDD 143 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCc-hHHHH-HHHHHHHc----CCCEEEEEEeecCCcch
Confidence 7666677889999999999887432 22222 22333332 56765 68999999753
No 258
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=100.09 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=85.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCccE
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRGAQG 87 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~~~ 87 (154)
|-++|-|++|||||++.+...+. ...+|.++.......+... ..-.+.+-|.||.-+ .-....+++.++.+
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 45699999999999999999887 6777887777777777663 333688899999322 22235556778999
Q ss_pred EEEEEECCCcch---HHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCch
Q 031704 88 IIMVYDVTRRDT---FTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 88 ~v~v~d~~~~~s---~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+++|+|++..+. .++... ...++..+ ....+.|.+||+||+|+...+
T Consensus 241 L~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~ 291 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDE 291 (369)
T ss_pred eEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCH
Confidence 999999986553 444444 44455554 334578999999999965443
No 259
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=3.1e-14 Score=105.70 Aligned_cols=124 Identities=19% Similarity=0.164 Sum_probs=97.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhc--CC-------------------CCCCCCcceeeeEEEEEEECCeEEEEEEEeC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTS--DT-------------------FEELSPTIGVDFKIKHVALGGKKMKLAIWDT 68 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 68 (154)
-.++-.++|+-.|.+|||||...|+- +. +-......|+...+..++++.....+++.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 34567899999999999999999862 11 1122245678888889999988999999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 69 ~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|||++|++-..+-+..+|++|+|+|+...-.-..+ .+-+.|...++||+-+.||.|.....+.++
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~------KLfeVcrlR~iPI~TFiNKlDR~~rdP~EL 153 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL------KLFEVCRLRDIPIFTFINKLDREGRDPLEL 153 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHHHH------HHHHHHhhcCCceEEEeeccccccCChHHH
Confidence 99999999998889999999999999875432221 333345667999999999999987777655
No 260
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.50 E-value=3.8e-13 Score=102.89 Aligned_cols=116 Identities=18% Similarity=0.120 Sum_probs=80.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC--C----------------------------CCCCcceeeeEEEEEEECCeE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--E----------------------------ELSPTIGVDFKIKHVALGGKK 60 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (154)
...++|+++|+.++|||||+.+|+...- . ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 3558999999999999999999875210 0 001123445555555566667
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---H---HHHHHHHHHHHhhhcCCCCC-cEEEEEeCCCC
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLADIWAKEIDLYSTNQDC-IKLLVGNKVDK 131 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~-~~ivv~nK~Dl 131 (154)
..++++|+||+.+|.......+..+|++++|+|+..... + ......|. .+.. .++ +++++.||+|.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~----~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT----LGVKQMIVCINKMDD 157 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH----cCCCeEEEEEEcccc
Confidence 789999999999998888888899999999999987431 0 12223122 2222 244 47899999995
No 261
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.49 E-value=4.6e-13 Score=102.42 Aligned_cols=115 Identities=17% Similarity=0.136 Sum_probs=81.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC------------------------------CCCCCcceeeeEEEEEEECCeEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKKM 61 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 61 (154)
..++|+++|+.++|||||+.+|+...- .......+.+.......+.....
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 458999999999999999999874211 00011234555555566666777
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCCcchHH-------HHHHHHHHHHhhhcCCCCC-cEEEEEeCCCCC
Q 031704 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLADIWAKEIDLYSTNQDC-IKLLVGNKVDKV 132 (154)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-~~ivv~nK~Dl~ 132 (154)
.++++|+||+++|.......++.+|++++|+|+++. .++ .... ....+.. .++ ++++++||+|+.
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~~----~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAFT----LGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHHH----cCCCcEEEEEEcccCC
Confidence 899999999999998888889999999999999873 222 2223 1222222 245 578899999986
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.6e-13 Score=103.20 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=84.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-c--------ccccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-T--------LTSSY 81 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--------~~~~~ 81 (154)
+..++|+++|+||+|||||+|.|...+....+|..|.|-......++-..+.+.+.||+|--+-. . .....
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 34589999999999999999999999987777777777666666665566778889999943311 1 12334
Q ss_pred ccCccEEEEEEEC--CCcchHHHHHHHHHHHHhhh-----cCCCCCcEEEEEeCCCCCCc
Q 031704 82 YRGAQGIIMVYDV--TRRDTFTNLADIWAKEIDLY-----STNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 82 ~~~~~~~v~v~d~--~~~~s~~~~~~~~~~~~~~~-----~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+.++|++++|+|+ ++.++...+.. ..+....- ......+++++.||+|+...
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCc
Confidence 6789999999999 44333333333 11111111 11134689999999999655
No 263
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.45 E-value=3.3e-13 Score=110.14 Aligned_cols=118 Identities=18% Similarity=0.232 Sum_probs=81.2
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------CCC---CcceeeeEEE--EEEE--------------C
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------ELS---PTIGVDFKIK--HVAL--------------G 57 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~------------~~~---~~~~~~~~~~--~~~~--------------~ 57 (154)
..+...+|+++|+.++|||||+++|+...-. +.. ...+.+.... .+.. .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3456789999999999999999999854310 000 1112222221 1211 1
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+..+.++++||||+.+|.......++.+|++++|+|+...-..... ..|... ...+.|++++.||+|+.
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~-----~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQA-----LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHH-----HHCCCCEEEEEECCccc
Confidence 2367889999999999988888889999999999999875443322 224333 23478999999999996
No 264
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.45 E-value=4.7e-13 Score=93.22 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCC-C--cceeeeEEEEEEECCeEEEEEEEeCCCcccccc-------ccc----
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-P--TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-------LTS---- 79 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~---- 79 (154)
++|+++|.+|+||||++|.+++....... . ..+.........+++. .+.++||||-.+... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~--~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR--QVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE--EEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce--EEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999998872221 1 1122233333455554 577899999322111 111
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
......|++++|+.+... +...... +......+...--..++||.|.+|...+..
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~~~~-l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~ 133 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEEDREV-LELLQEIFGEEIWKHTIVVFTHADELEDDS 133 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHH-HHHHHHHHCGGGGGGEEEEEEEGGGGTTTT
T ss_pred hccCCCeEEEEEEecCcc-hHHHHHH-HHHHHHHccHHHHhHhhHHhhhcccccccc
Confidence 123468999999998832 2222211 222222232222347899999988765544
No 265
>PTZ00416 elongation factor 2; Provisional
Probab=99.44 E-value=4.1e-13 Score=109.45 Aligned_cols=117 Identities=19% Similarity=0.209 Sum_probs=79.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC---------------CCCCcceeeeEEE--EEEEC--------CeEEEEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE---------------ELSPTIGVDFKIK--HVALG--------GKKMKLA 64 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~--~~~~~--------~~~~~~~ 64 (154)
.+...+|+++|+.++|||||+++|+...-. ......+++.... .+.+. ++...++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345669999999999999999999863210 0001112222221 12222 2256799
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
++||||+.+|.......++.+|++++|+|+...-.... ...|. .+. ..+.|++++.||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~-~~~----~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLR-QAL----QERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHH-HHH----HcCCCEEEEEEChhhh
Confidence 99999999888778888999999999999887543332 23233 222 2357999999999996
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.8e-12 Score=95.95 Aligned_cols=129 Identities=19% Similarity=0.121 Sum_probs=91.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC------------------------C------CCCCcceeeeEEEEEEECCeE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------E------ELSPTIGVDFKIKHVALGGKK 60 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~------------------------~------~~~~~~~~~~~~~~~~~~~~~ 60 (154)
...++++++|+..+|||||+-+|+.+.- + ...-..|.|.......+..+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 3568999999999999999999874310 0 001123567777777777788
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchH------HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF------TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~------~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+.++++|+||+.+|-..+.....++|+.|+|+|+.+.+.- ...++ ..-..+. ..-..+||+.||.|+.+.
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~t---lGi~~lIVavNKMD~v~w 160 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLART---LGIKQLIVAVNKMDLVSW 160 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHh---cCCceEEEEEEccccccc
Confidence 8999999999988888888888999999999999876411 11122 1112221 123468999999999987
Q ss_pred hhhhhhhhh
Q 031704 135 WRLFLSGFW 143 (154)
Q Consensus 135 ~~~~~~~~~ 143 (154)
++...+++.
T Consensus 161 de~rf~ei~ 169 (428)
T COG5256 161 DEERFEEIV 169 (428)
T ss_pred CHHHHHHHH
Confidence 776554443
No 267
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=9.3e-13 Score=89.52 Aligned_cols=119 Identities=20% Similarity=0.263 Sum_probs=85.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc---CccEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR---GAQGIIM 90 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~v~ 90 (154)
-.++++|+.+||||+|+.+|..+.+........ .....+..++.. ++++|.|||.+.+.....++. .+-++||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie--pn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE--PNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeec--cceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 579999999999999999999987643332222 223333343333 678899999998887777766 6899999
Q ss_pred EEECCC-cchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchh
Q 031704 91 VYDVTR-RDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 91 v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|.|... ........++++..+.... .....|+.+..||.|+..++.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt 162 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKT 162 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCc
Confidence 999764 3344566666666665532 355679999999999976553
No 268
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.41 E-value=3.7e-13 Score=94.92 Aligned_cols=119 Identities=26% Similarity=0.391 Sum_probs=78.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-ceeeeEEE-EEEECCeEEEEEEEeCCCccc-------ccccccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPT-IGVDFKIK-HVALGGKKMKLAIWDTAGQER-------FRTLTSS 80 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~ 80 (154)
....++++++|.+|+||||++|+|+.+...+.... .+.+.... ..++++ -.+.+||+||-.+ +++....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHH
Confidence 45679999999999999999999997655222211 11111111 122233 3678999999544 5666677
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++.+.|.++++++..++.--.+. .+|.+.+... -+.+++++.|.+|...+
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~---~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILG---LDKRVLFVVTQADRAEP 163 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhc---cCceeEEEEehhhhhcc
Confidence 78889999999999886533222 2244444332 24789999999998544
No 269
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.41 E-value=8.3e-12 Score=89.90 Aligned_cols=85 Identities=27% Similarity=0.208 Sum_probs=64.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cc---cccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FR---TLTSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~---~~~~~~~~ 83 (154)
..-+++++|.|++|||||++.|.+.+. ...+++++.+.....+.+.+ ..+++.|+||.-. -+ .......|
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 345899999999999999999999887 66677776666666666554 5678889998321 11 23455689
Q ss_pred CccEEEEEEECCCcc
Q 031704 84 GAQGIIMVYDVTRRD 98 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~ 98 (154)
.||.+++|+|+....
T Consensus 140 ~ADlIiiVld~~~~~ 154 (365)
T COG1163 140 NADLIIIVLDVFEDP 154 (365)
T ss_pred cCCEEEEEEecCCCh
Confidence 999999999998544
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.40 E-value=1.3e-12 Score=104.67 Aligned_cols=111 Identities=20% Similarity=0.230 Sum_probs=75.2
Q ss_pred EcCCCCCHHHHHHHHhcCCCC--------------CC---CCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 031704 19 IGDSGVGKSTLLLSFTSDTFE--------------EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY 81 (154)
Q Consensus 19 ~G~~~~GKstli~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (154)
+|+.++|||||+++|+...-. +. ....+++.......+....+.+++|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999643210 00 0012333333333333345789999999998887777788
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++.+|++++|+|+++......... |. .+. ..+.|+++|+||+|+....
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETV-WR-QAE----KYGVPRIIFVNKMDRAGAD 128 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHH-HH-HHH----HcCCCEEEEEECCCCCCCC
Confidence 899999999999988665443322 32 222 2367999999999997544
No 271
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.38 E-value=9.8e-12 Score=83.29 Aligned_cols=62 Identities=24% Similarity=0.307 Sum_probs=42.1
Q ss_pred EEEEeCCCccc----ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCC
Q 031704 63 LAIWDTAGQER----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129 (154)
Q Consensus 63 ~~i~D~~g~~~----~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 129 (154)
+.++||||-.. .......+++.+|++++|.++++..+...... |.+.... .....++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT----TCSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC----CCCeEEEEEcCC
Confidence 88999999532 33556777899999999999998555443333 4444433 344489999984
No 272
>PRK09866 hypothetical protein; Provisional
Probab=99.38 E-value=7.4e-12 Score=97.79 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=45.5
Q ss_pred EEEEEeCCCccc-----ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 62 KLAIWDTAGQER-----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 62 ~~~i~D~~g~~~-----~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.+.++||||-.. ........+..+|++++|+|.++..+..+. . ..+.+... ....|+++|.||+|+.+
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-e-Ilk~Lkk~--~K~~PVILVVNKIDl~d 303 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-E-VREAILAV--GQSVPLYVLVNKFDQQD 303 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-H-HHHHHHhc--CCCCCEEEEEEcccCCC
Confidence 378899999543 222344568899999999999875443321 1 33344432 22359999999999975
No 273
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.38 E-value=4.2e-12 Score=93.35 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=58.8
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCc----------chHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
..+.+.+||++|+...+..|..++.+++++++|+|+++. ..+......|...+. ...-.+.|++|++||
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~-~~~~~~~pill~~NK 237 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICN-SRWFANTSIILFLNK 237 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHh-CccccCCCEEEEccC
Confidence 346789999999999999999999999999999999874 455555553444433 334467899999999
Q ss_pred CCCCCc
Q 031704 129 VDKVCP 134 (154)
Q Consensus 129 ~Dl~~~ 134 (154)
.|+..+
T Consensus 238 ~D~f~~ 243 (317)
T cd00066 238 KDLFEE 243 (317)
T ss_pred hHHHHH
Confidence 998643
No 274
>PTZ00258 GTP-binding protein; Provisional
Probab=99.37 E-value=8.7e-12 Score=93.35 Aligned_cols=85 Identities=25% Similarity=0.268 Sum_probs=60.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeE---------------EEEEEEeCCCccc-
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK---------------MKLAIWDTAGQER- 73 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~- 73 (154)
...++|.++|.|++|||||+|++.+.+. ...+|.++.......+.+.+.. ..+.++|+||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4568999999999999999999987766 3444666555555555544322 3489999999432
Q ss_pred ------ccccccccccCccEEEEEEECC
Q 031704 74 ------FRTLTSSYYRGAQGIIMVYDVT 95 (154)
Q Consensus 74 ------~~~~~~~~~~~~~~~v~v~d~~ 95 (154)
........++++|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2223344578899999999974
No 275
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=5.2e-12 Score=80.25 Aligned_cols=93 Identities=27% Similarity=0.304 Sum_probs=67.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCC-CC-CcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+|++++|..|+|||+|+.++....+.. +. ++.+ +........+.+++++.|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997776632 11 2221 222234456778999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
|+.++.++++.+ |...+... .+.+.|.++++||.|+.++.+.
T Consensus 54 ~~~~~~~s~~~~---~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~ 95 (124)
T smart00010 54 WRVDDRDSADNK---NVPEVLVG-NKSDLPILVGGNRDVLEEERQV 95 (124)
T ss_pred EEccCHHHHHHH---hHHHHHhc-CCCCCcEEEEeechhhHhhCcC
Confidence 999999888755 76666554 4567889999999999544433
No 276
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.37 E-value=1.8e-12 Score=104.64 Aligned_cols=117 Identities=20% Similarity=0.243 Sum_probs=79.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------CCCC---cceeeeEEE----EEEECCeEEEEEEEeCCC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------ELSP---TIGVDFKIK----HVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~------------~~~~---~~~~~~~~~----~~~~~~~~~~~~i~D~~g 70 (154)
.+...+|+++|+.++|||||+.+++...-. +..+ ..+++.... .+..++..+.++++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 345678999999999999999999753210 0000 112222221 223355577899999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+.+|.......++.+|++++|+|+...-... ....|..... .+.|.+++.||+|+.
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~-----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR-----ERVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH-----cCCCeEEEEECchhh
Confidence 9998887888899999999999988753322 2222433222 245679999999986
No 277
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.2e-11 Score=89.90 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=91.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC-----------------C---------------CCCcceeeeEEEEEEEC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-----------------E---------------LSPTIGVDFKIKHVALG 57 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~-----------------~---------------~~~~~~~~~~~~~~~~~ 57 (154)
....+|++-+|...-||||||-||+...-. . .....|+|......++.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 345689999999999999999999743110 0 00123667777777777
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.++.+|.+.|||||++|...+......||+.|+++|+...-.-+.-+..+...+ ..-..+++..||+||.+..+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sL-----LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASL-----LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHH-----hCCcEEEEEEeeecccccCHH
Confidence 788899999999999999888888889999999999854322222222122111 123468999999999988876
Q ss_pred hhhhhh
Q 031704 138 FLSGFW 143 (154)
Q Consensus 138 ~~~~~~ 143 (154)
..+++.
T Consensus 158 ~F~~I~ 163 (431)
T COG2895 158 VFEAIV 163 (431)
T ss_pred HHHHHH
Confidence 554443
No 278
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.34 E-value=1.4e-11 Score=91.95 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=74.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC----CCC-----------CCCCccee-----eeEE---EEEE---ECCeEEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD----TFE-----------ELSPTIGV-----DFKI---KHVA---LGGKKMKLA 64 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~----~~~-----------~~~~~~~~-----~~~~---~~~~---~~~~~~~~~ 64 (154)
...+.|.++|+.++|||||+|+|.+. ... -.+...|- +... ..+. .++-..++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 45689999999999999999999988 222 11222221 1111 1122 234567899
Q ss_pred EEeCCCccccc-------cc----------------------cccccc-CccEEEEEE-ECC----CcchHHHHHHHHHH
Q 031704 65 IWDTAGQERFR-------TL----------------------TSSYYR-GAQGIIMVY-DVT----RRDTFTNLADIWAK 109 (154)
Q Consensus 65 i~D~~g~~~~~-------~~----------------------~~~~~~-~~~~~v~v~-d~~----~~~s~~~~~~~~~~ 109 (154)
++||+|-..-. .. ....++ +++..++|. |.+ .++........|.+
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999922100 00 233455 789888888 653 12344455554677
Q ss_pred HHhhhcCCCCCcEEEEEeCCCCC
Q 031704 110 EIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 110 ~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
.++.. ++|+++|.||.|..
T Consensus 175 eLk~~----~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKEL----NKPFIILLNSTHPY 193 (492)
T ss_pred HHHhc----CCCEEEEEECcCCC
Confidence 77654 89999999999954
No 279
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.34 E-value=4.5e-11 Score=86.43 Aligned_cols=120 Identities=20% Similarity=0.338 Sum_probs=70.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----------CcceeeeEEEEEEECCeEEEEEEEeCCCccc-------
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----------PTIGVDFKIKHVALGGKKMKLAIWDTAGQER------- 73 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------- 73 (154)
-.++|+|+|.+|+|||||+|.|++....... .+..+........-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3589999999999999999999987652111 1222333333444567889999999999110
Q ss_pred -----------ccc-------cccccc--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 74 -----------FRT-------LTSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 74 -----------~~~-------~~~~~~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+.. ..+..+ .+.|+|++.++.+... +..+.-...+.+ ....++|-|..|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~L-----s~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRL-----SKRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHH-----TTTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHh-----cccccEEeEEecccccC
Confidence 000 000001 2569999999987532 222211122333 23567899999999987
Q ss_pred chhh
Q 031704 134 PWRL 137 (154)
Q Consensus 134 ~~~~ 137 (154)
+.+.
T Consensus 157 ~~el 160 (281)
T PF00735_consen 157 PEEL 160 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 280
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.33 E-value=9.2e-12 Score=95.34 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=76.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEE-----------------EEECC------------
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKH-----------------VALGG------------ 58 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~-----------------~~~~~------------ 58 (154)
....++|.++|+-..|||||+..|.+.... ......|.|....- .....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 345689999999999999999999975331 00111111100000 00000
Q ss_pred e----EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 59 K----KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 59 ~----~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
. ...+.++|+||++.|.......+..+|++++|+|+..........+ ....+... .-.++++|.||+|+.+.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl~i~~~l---gi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HLAAVEIM---KLKHIIILQNKIDLVKE 186 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HHHHHHHc---CCCcEEEEEecccccCH
Confidence 0 2368899999999988777777889999999999987421111222 12222222 12468999999999764
Q ss_pred h
Q 031704 135 W 135 (154)
Q Consensus 135 ~ 135 (154)
.
T Consensus 187 ~ 187 (460)
T PTZ00327 187 A 187 (460)
T ss_pred H
Confidence 4
No 281
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=1.2e-11 Score=94.10 Aligned_cols=116 Identities=17% Similarity=0.127 Sum_probs=86.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECC---eEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGG---KKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
.+=+.++|+.--|||||+-.+=..+. .....-|+|.+..-+.+.- ....+.|+|||||+.|..+..+-..-+|.++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~V-a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCcc-ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45689999999999999998877665 3344555666666655543 2347889999999999999998889999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+|.++.+.-.-+.... .+.+ +..+.|+++..||+|.++..
T Consensus 84 LVVa~dDGv~pQTiEA--I~ha----k~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 84 LVVAADDGVMPQTIEA--INHA----KAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred EEEEccCCcchhHHHH--HHHH----HHCCCCEEEEEecccCCCCC
Confidence 9999998433222211 1122 45589999999999998554
No 282
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.32 E-value=5.8e-11 Score=91.10 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=91.0
Q ss_pred cccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031704 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83 (154)
Q Consensus 5 ~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (154)
.++......+++.++|+.++|||.+++.++++.+ .....+....+........++...+.+.|.+-. ........- .
T Consensus 417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~ 494 (625)
T KOG1707|consen 417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A 494 (625)
T ss_pred ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence 3455667889999999999999999999999888 333345555555666666677767777787754 222222222 6
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.||+++++||.+++.+|+.+.. ....+......|+++|++|+|+....
T Consensus 495 ~cDv~~~~YDsS~p~sf~~~a~----v~~~~~~~~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRSFEYLAE----VYNKYFDLYKIPCLMVATKADLDEVP 542 (625)
T ss_pred eeeeEEEecccCCchHHHHHHH----HHHHhhhccCCceEEEeeccccchhh
Confidence 6899999999999999998877 22222233688999999999995444
No 283
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.31 E-value=2.7e-11 Score=94.99 Aligned_cols=121 Identities=17% Similarity=0.202 Sum_probs=72.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCc-cee-eeEEEEEEECCeEEEEEEEeCCCccccc-------cc---c
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPT-IGV-DFKIKHVALGGKKMKLAIWDTAGQERFR-------TL---T 78 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~ 78 (154)
+..++|+++|.+|+||||++|.+++.+....... .+. .........++ ..+.++||||-.... .+ .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 4557999999999999999999999875222211 111 11111222333 468899999955321 11 1
Q ss_pred ccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCC-CCCcEEEEEeCCCCCCc
Q 031704 79 SSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN-QDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 79 ~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~ivv~nK~Dl~~~ 134 (154)
..++. ..|++++|..+........-.. +++.+....+. .-...|||.|+.|...+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLP-LLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHH-HHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 12233 4799999998764333212122 44444443232 23478999999998753
No 284
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=1.6e-11 Score=97.72 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=87.7
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-----------------CCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------------EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQ 71 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~ 71 (154)
.....+|.++|+-.+||||+..+++...- .......|+|.........-+ .+.++++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 45668999999999999999999874211 011123355555554444334 589999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
-+|.....+.++-+|++++|+|+...-....-.- |.+.. ..+.|.+++.||.|....+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa~-----~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQAD-----KYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHHh-----hcCCCeEEEEECccccccC
Confidence 9999999999999999999999987544333222 55443 3478999999999986554
No 285
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.31 E-value=1.4e-11 Score=91.47 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=57.4
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCc----------chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 130 (154)
+.+.+||.+|+...+..|..++.+++++++|.|+++. ..+......|...+ ....-.+.|++|++||.|
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~-~~~~~~~~piil~~NK~D 262 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC-NSRWFANTSIILFLNKID 262 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH-cCccccCCcEEEEEecHH
Confidence 5588999999999999999999999999999999973 35666666343333 333456789999999999
Q ss_pred CCCc
Q 031704 131 KVCP 134 (154)
Q Consensus 131 l~~~ 134 (154)
+..+
T Consensus 263 ~~~~ 266 (342)
T smart00275 263 LFEE 266 (342)
T ss_pred hHHH
Confidence 8643
No 286
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=4.7e-11 Score=91.10 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=90.4
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC--C------------CCCCcceeeeEEE---EEEECCeEEEEEEEeCCCc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E------------ELSPTIGVDFKIK---HVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~------------~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~ 71 (154)
+.++..++.|+.+-.=|||||..+++...- . +..-..|+|.... .++.+++.+.++++|||||
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 336678999999999999999999975322 1 1111234443332 3344577899999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.+|.....+.+.-|+++++|.|++..-.-+....+|+-. ..+..+|.|.||+|+..++.-
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf------e~~L~iIpVlNKIDlp~adpe 195 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF------EAGLAIIPVLNKIDLPSADPE 195 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH------HcCCeEEEeeeccCCCCCCHH
Confidence 999999999999999999999999876555555533322 235678999999999866643
No 287
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=5e-11 Score=92.80 Aligned_cols=117 Identities=26% Similarity=0.322 Sum_probs=87.8
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC----------------cceeeeEEEEEEE-----CCeEEEEEEEe
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP----------------TIGVDFKIKHVAL-----GGKKMKLAIWD 67 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~-----~~~~~~~~i~D 67 (154)
......+++++|+-..|||+|...|..+..+.... ..|++......++ .++.+-++++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 34577899999999999999999998776533211 1233333333332 56788999999
Q ss_pred CCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (154)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl 131 (154)
|||+-.|.......++.+|++++++|+...-++..- .+.++....+.|+++|.||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE------r~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE------RIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH------HHHHHHHhccCcEEEEEehhHH
Confidence 999999999888889999999999999987765432 2222324557899999999996
No 288
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.24 E-value=1.4e-10 Score=81.86 Aligned_cols=120 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcce-----------eeeEEEEEEE----------------------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIG-----------VDFKIKHVAL---------------------- 56 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~-----------~~~~~~~~~~---------------------- 56 (154)
-..++++++|+.|+||||+++.+.+..+ +......+ ...+...+..
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 3557899999999999999999998753 21110000 0000011100
Q ss_pred ----------------CC-eEEEEEEEeCCCccc-------------ccccccccccC-ccEEEEEEECCCcchHHHHHH
Q 031704 57 ----------------GG-KKMKLAIWDTAGQER-------------FRTLTSSYYRG-AQGIIMVYDVTRRDTFTNLAD 105 (154)
Q Consensus 57 ----------------~~-~~~~~~i~D~~g~~~-------------~~~~~~~~~~~-~~~~v~v~d~~~~~s~~~~~~ 105 (154)
.+ ....+.++||||-.. ...+...++++ .+.+++|.|+...-.-.....
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 00 114589999999642 12234455664 468999998865333222222
Q ss_pred HHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 106 IWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+.+.+ .....++++|+||+|..++.
T Consensus 184 -ia~~l----d~~~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 184 -LAKEV----DPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred -HHHHH----HHcCCcEEEEEECCCCCCcc
Confidence 22233 33477899999999997654
No 289
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.23 E-value=1.3e-11 Score=91.61 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=57.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCC--cceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc-----c
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSP--TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS-----Y 81 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~ 81 (154)
+..++|+|+|.+|+|||||||.|-+-.. ....+ ....|.....+.. ...-.+.+||.||.......... .
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4568999999999999999999965322 11111 1111222222322 22236899999995432222222 2
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl 131 (154)
+.+.|.++++.+ + .|......+.+.++.. ++|+++|-+|+|.
T Consensus 112 ~~~yD~fiii~s-~---rf~~ndv~La~~i~~~----gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 112 FYRYDFFIIISS-E---RFTENDVQLAKEIQRM----GKKFYFVRTKVDS 153 (376)
T ss_dssp GGG-SEEEEEES-S---S--HHHHHHHHHHHHT----T-EEEEEE--HHH
T ss_pred ccccCEEEEEeC-C---CCchhhHHHHHHHHHc----CCcEEEEEecccc
Confidence 556798887665 2 2333333233455544 7789999999996
No 290
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.22 E-value=9e-11 Score=82.47 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=67.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
.....|+++|.+|+|||||++.+.+... .......| +.. .. ......+.++||||.. .. .....+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i~--i~--~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PIT--VV--TGKKRRLTFIECPNDI--NA-MIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cEE--EE--ecCCceEEEEeCCchH--HH-HHHHHHhcCEEE
Confidence 3456799999999999999999987532 11111112 111 11 1234467889999864 22 233467899999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCc
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCP 134 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~ 134 (154)
+++|++....... .. +...+.. .+.| +++|.||+|+..+
T Consensus 109 lviDa~~~~~~~~-~~-i~~~l~~----~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 109 LLIDASFGFEMET-FE-FLNILQV----HGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred EEEecCcCCCHHH-HH-HHHHHHH----cCCCeEEEEEeccccCCc
Confidence 9999876443322 12 2233332 2456 4559999999744
No 291
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.22 E-value=1.1e-10 Score=87.86 Aligned_cols=121 Identities=22% Similarity=0.246 Sum_probs=88.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--------------ELSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ 71 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~ 71 (154)
....++.++.+-.=|||||..|++...-. +.....|+|.....+.+ +++.|.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 45568889999999999999999753210 11122344443333322 568899999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.+|.-...+.+..|.+++++.|+++.-.-+.+.+. +.-+. .+.-++-|.||+||+.++..
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~-YlAle-----~~LeIiPViNKIDLP~Adpe 146 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALE-----NNLEIIPVLNKIDLPAADPE 146 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHH-HHHHH-----cCcEEEEeeecccCCCCCHH
Confidence 99998888889999999999999997766666663 33332 35678999999999866543
No 292
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.4e-10 Score=89.00 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=94.6
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcC----------------------CC--------CCCCCcceeeeEEEEEEEC
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSD----------------------TF--------EELSPTIGVDFKIKHVALG 57 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~----------------------~~--------~~~~~~~~~~~~~~~~~~~ 57 (154)
......++++++|...+|||||.-+++.. .+ .......|++......++.
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 34457799999999999999999988631 01 0111234666777777777
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HH---HHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (154)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl 131 (154)
.....+++.|.||+-.|...+.....++|++++|.|++..+- |+ ..++ ....++.. .-..++|+.||.|+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L---gi~qlivaiNKmD~ 327 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL---GISQLIVAINKMDL 327 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc---CcceEEEEeecccc
Confidence 778899999999999888888888899999999999875321 11 1222 22333333 23468999999999
Q ss_pred CCchhhhhhhhh
Q 031704 132 VCPWRLFLSGFW 143 (154)
Q Consensus 132 ~~~~~~~~~~~~ 143 (154)
.+..+....++.
T Consensus 328 V~Wsq~RF~eIk 339 (603)
T KOG0458|consen 328 VSWSQDRFEEIK 339 (603)
T ss_pred cCccHHHHHHHH
Confidence 998887766554
No 293
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.7e-10 Score=84.61 Aligned_cols=125 Identities=21% Similarity=0.252 Sum_probs=82.3
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCC--CCCcceeeeEEEEEEECCeE-------------------------
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE--LSPTIGVDFKIKHVALGGKK------------------------- 60 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~------------------------- 60 (154)
+.....+-|+++|+-+.||||||+.|+.++++. ..|..+.++....+..+...
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 345566789999999999999999999999842 22333233333444332111
Q ss_pred --------------EEEEEEeCCCcc-----------cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhc
Q 031704 61 --------------MKLAIWDTAGQE-----------RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS 115 (154)
Q Consensus 61 --------------~~~~i~D~~g~~-----------~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~ 115 (154)
-+++++||||.- .|......+..++|.++++||....+--++... ....++.+
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~-vi~aLkG~- 210 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR-VIDALKGH- 210 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH-HHHHhhCC-
Confidence 128999999932 234445556788999999999876544344333 23344432
Q ss_pred CCCCCcEEEEEeCCCCCCchhh
Q 031704 116 TNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 116 ~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.-.+.||+||.|..+.++.
T Consensus 211 ---EdkiRVVLNKADqVdtqqL 229 (532)
T KOG1954|consen 211 ---EDKIRVVLNKADQVDTQQL 229 (532)
T ss_pred ---cceeEEEeccccccCHHHH
Confidence 3347899999999988764
No 294
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.4e-10 Score=88.72 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=87.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
..+.+=+.++|...=|||||+.+|=+... .....-|+|.++.-+.+.- +.-.++|.|||||..|..+..+..+-.|.+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~V-AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSV-AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCce-ehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 34667899999999999999999877665 3344555666665554421 225788999999999999999888899999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++|..+.|.-.-+.+. -+. +....+.|+|+..||||.+.+.
T Consensus 229 VLVVAadDGVmpQT~E-----aIk-hAk~A~VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 229 VLVVAADDGVMPQTLE-----AIK-HAKSANVPIVVAINKIDKPGAN 269 (683)
T ss_pred EEEEEccCCccHhHHH-----HHH-HHHhcCCCEEEEEeccCCCCCC
Confidence 9999998854322221 222 2256689999999999986444
No 295
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.19 E-value=8.3e-11 Score=87.28 Aligned_cols=82 Identities=21% Similarity=0.234 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeE---------------EEEEEEeCCCccc----
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK---------------MKLAIWDTAGQER---- 73 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~---- 73 (154)
++|.++|.|++|||||+|++.+.+. ...+|.++.......+.+.+.. ..+.+.|+||-..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999999885 3444555555555555554421 2589999999432
Q ss_pred ---ccccccccccCccEEEEEEECC
Q 031704 74 ---FRTLTSSYYRGAQGIIMVYDVT 95 (154)
Q Consensus 74 ---~~~~~~~~~~~~~~~v~v~d~~ 95 (154)
........++++|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1122344578999999999985
No 296
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.15 E-value=7.4e-11 Score=84.80 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=56.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeE---------------EEEEEEeCCCccc------
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK---------------MKLAIWDTAGQER------ 73 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~------ 73 (154)
|.++|.|++|||||+|++.+.+. ...+|.++.......+.+.+.. ..+.++|+||-..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57899999999999999999887 4445665555555555554431 2589999999432
Q ss_pred -ccccccccccCccEEEEEEECC
Q 031704 74 -FRTLTSSYYRGAQGIIMVYDVT 95 (154)
Q Consensus 74 -~~~~~~~~~~~~~~~v~v~d~~ 95 (154)
........++++|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112334467899999999874
No 297
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.13 E-value=2.1e-10 Score=84.39 Aligned_cols=76 Identities=17% Similarity=0.146 Sum_probs=59.2
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcch----------HHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT----------FTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
+...+.++|++|+-..+..|.+++.+++++++|.++++.+. ...... +++.+.+...-.+.++||++||
T Consensus 193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~-LF~sI~n~~~F~~tsiiLFLNK 271 (354)
T KOG0082|consen 193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLK-LFESICNNKWFANTSIILFLNK 271 (354)
T ss_pred CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHH-HHHHHhcCcccccCcEEEEeec
Confidence 34678899999999889999999999999999999986332 333344 4555555556678999999999
Q ss_pred CCCCCch
Q 031704 129 VDKVCPW 135 (154)
Q Consensus 129 ~Dl~~~~ 135 (154)
.||..+.
T Consensus 272 ~DLFeEK 278 (354)
T KOG0082|consen 272 KDLFEEK 278 (354)
T ss_pred HHHHHHH
Confidence 9997554
No 298
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.11 E-value=5.9e-10 Score=83.93 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=85.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC--CC-------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF--EE-------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (154)
.-+|+++.+..-|||||+..|+.+.- .. .....|+|.-.+.-.+..+.+.++++|||||.+|-..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 46899999999999999999987642 11 1123456665555555556688999999999999999
Q ss_pred ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
..+.+.=.|+++++.|+...-.-+ .+- ..+... ..+.+.|||.||+|..+++..
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQ-TrF-VlkKAl----~~gL~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQ-TRF-VLKKAL----ALGLKPIVVINKIDRPDARPD 138 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCc-hhh-hHHHHH----HcCCCcEEEEeCCCCCCCCHH
Confidence 988899999999999998743211 111 222222 224556889999999887754
No 299
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.07 E-value=4.2e-10 Score=73.50 Aligned_cols=54 Identities=24% Similarity=0.344 Sum_probs=42.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (154)
+++++|.+|+|||||+|++++..........+.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999988754555555555555666654 4689999994
No 300
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.05 E-value=2.5e-10 Score=71.55 Aligned_cols=104 Identities=20% Similarity=0.110 Sum_probs=67.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc----cccccCccEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT----SSYYRGAQGIIM 90 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~~~~v~ 90 (154)
||+++|..|+|||||.+.+.+... -+..+..+ +++++ -.+||||.-.....+ .....++|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAv-------e~~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAV-------EFNDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh-hhccccee-------eccCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 799999999999999999988764 22222221 22211 135999954333333 333567899999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
+..++++.+.-.. .+. .....|+|-|.+|.||..+..+++
T Consensus 71 v~~and~~s~f~p------~f~---~~~~k~vIgvVTK~DLaed~dI~~ 110 (148)
T COG4917 71 VHAANDPESRFPP------GFL---DIGVKKVIGVVTKADLAEDADISL 110 (148)
T ss_pred eecccCccccCCc------ccc---cccccceEEEEecccccchHhHHH
Confidence 9999998653211 111 223456899999999985555543
No 301
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.05 E-value=7.7e-10 Score=91.49 Aligned_cols=99 Identities=19% Similarity=0.177 Sum_probs=67.9
Q ss_pred CHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCe------------------EEEEEEEeCCCcccccccccccccCcc
Q 031704 25 GKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK------------------KMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 25 GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
+||||+.++-+.+. ......|+|.+.....+... ...+.||||||++.+..+....+..+|
T Consensus 473 ~KTtLLD~iR~t~v-~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 473 HNTTLLDKIRKTRV-AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred ccccHHHHHhCCCc-ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 59999999988776 22334444444443322110 012899999999999888777788899
Q ss_pred EEEEEEECCCc---chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 87 GIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 87 ~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
++++|+|+++. ++++.+ ..+.. .+.|+++|+||+|+..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I-----~~lk~----~~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAI-----NILRQ----YKTPFVVAANKIDLIP 592 (1049)
T ss_pred EEEEEEECcccCCHhHHHHH-----HHHHH----cCCCEEEEEECCCCcc
Confidence 99999999873 333322 22222 2579999999999964
No 302
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.04 E-value=9e-10 Score=73.20 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=42.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (154)
...+++++|.+|+|||||+|++.+.......+..|.|.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 35789999999999999999999887755556666555555544433 367889998
No 303
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.04 E-value=4.5e-10 Score=77.61 Aligned_cols=120 Identities=26% Similarity=0.411 Sum_probs=78.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccccCc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-----RTLTSSYYRGA 85 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~~~~ 85 (154)
.-||+++|.+|+|||++--.++.+-. ....+..+++....+..+-| ...+++||+.|++.+ .......++..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 45999999999999998766664332 22233333344444443333 246789999998843 23445568889
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCc
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~ 134 (154)
++++++||+...+...++.. +..-+...+. .+...+....+|.||...
T Consensus 83 ~vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred eeeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 99999999998776656555 4333333222 345577888999999643
No 304
>PRK13768 GTPase; Provisional
Probab=99.04 E-value=6.2e-10 Score=79.54 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=44.8
Q ss_pred EEEEEeCCCcccc---cccccccc---cC--ccEEEEEEECCCcchHHHHHHH-HHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 62 KLAIWDTAGQERF---RTLTSSYY---RG--AQGIIMVYDVTRRDTFTNLADI-WAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 62 ~~~i~D~~g~~~~---~~~~~~~~---~~--~~~~v~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
.+.+||+||+.+. +..+..++ .. .+++++++|+....+....... |....... ..+.|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence 5889999997552 33332222 22 7999999999764433332221 22222211 2368999999999997
Q ss_pred Cchh
Q 031704 133 CPWR 136 (154)
Q Consensus 133 ~~~~ 136 (154)
...+
T Consensus 176 ~~~~ 179 (253)
T PRK13768 176 SEEE 179 (253)
T ss_pred Cchh
Confidence 6543
No 305
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.03 E-value=4e-10 Score=85.40 Aligned_cols=119 Identities=20% Similarity=0.162 Sum_probs=76.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccc-------ccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRT-------LTS 79 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~-------~~~ 79 (154)
....++++|-|++|||||+|.+..... ...+++++-..... .++.+...+++.||||.-+ .+. ...
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 346889999999999999999888776 44444443222222 2344556788999999321 111 122
Q ss_pred ccccCccEEEEEEECC--CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 80 SYYRGAQGIIMVYDVT--RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.+++ .++++..|++ +.-|...... ++..+.- ...+.|.|+|+||+|+.....+
T Consensus 245 AHLr--aaVLYfmDLSe~CGySva~Qvk-LfhsIKp--LFaNK~~IlvlNK~D~m~~edL 299 (620)
T KOG1490|consen 245 AHLR--SAVLYFMDLSEMCGYSVAAQVK-LYHSIKP--LFANKVTILVLNKIDAMRPEDL 299 (620)
T ss_pred HHhh--hhheeeeechhhhCCCHHHHHH-HHHHhHH--HhcCCceEEEeecccccCcccc
Confidence 2334 4566666665 5667776666 4444433 2357889999999999766554
No 306
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.02 E-value=1e-09 Score=74.03 Aligned_cols=56 Identities=27% Similarity=0.370 Sum_probs=44.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (154)
..++++++|.+|+|||||+|++.+.......+..|.|.....+..+. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 34799999999999999999999988755566667666655555543 478899998
No 307
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.01 E-value=2.6e-09 Score=75.71 Aligned_cols=71 Identities=20% Similarity=0.074 Sum_probs=41.9
Q ss_pred EEEEEEeCCCccc-cccccccc-----c--cCccEEEEEEECC---CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCC
Q 031704 61 MKLAIWDTAGQER-FRTLTSSY-----Y--RGAQGIIMVYDVT---RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129 (154)
Q Consensus 61 ~~~~i~D~~g~~~-~~~~~~~~-----~--~~~~~~v~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 129 (154)
....++||||+-+ |.=..... + ....+++++.|.. ++.+|-..--+-...+.+ ...|++++.||+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk----tklp~ivvfNK~ 191 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK----TKLPFIVVFNKT 191 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh----ccCCeEEEEecc
Confidence 4578899999642 22111111 1 2346788888854 344554332212234443 478999999999
Q ss_pred CCCCch
Q 031704 130 DKVCPW 135 (154)
Q Consensus 130 Dl~~~~ 135 (154)
|+.+..
T Consensus 192 Dv~d~~ 197 (366)
T KOG1532|consen 192 DVSDSE 197 (366)
T ss_pred cccccH
Confidence 997664
No 308
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.00 E-value=4.9e-10 Score=79.29 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=34.1
Q ss_pred EEEEEeCCCcccccccccc------cc--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 62 KLAIWDTAGQERFRTLTSS------YY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~------~~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.+.++|||||.++-..+.. .+ ...-++++++|......-......++..+... ...+.|.+.|.||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 5789999998654332221 12 23468899999764433221111122111111 123789999999999987
Q ss_pred ch
Q 031704 134 PW 135 (154)
Q Consensus 134 ~~ 135 (154)
+.
T Consensus 171 ~~ 172 (238)
T PF03029_consen 171 KY 172 (238)
T ss_dssp HH
T ss_pred ch
Confidence 44
No 309
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.8e-09 Score=77.19 Aligned_cols=125 Identities=19% Similarity=0.129 Sum_probs=85.3
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcC----------CC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSD----------TF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (154)
......++|..+|.-.-|||||...+..- .+ .......|++....+..+.....++-..|+||+.
T Consensus 7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 44456799999999999999999887531 11 1222345667777776665555667778999999
Q ss_pred cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+|-..+....-+.|+.|+|.++++...-...... ++.++ ..-..+++++||+|+.++++.
T Consensus 87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHi---Llarq--vGvp~ivvflnK~Dmvdd~el 146 (394)
T COG0050 87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHI---LLARQ--VGVPYIVVFLNKVDMVDDEEL 146 (394)
T ss_pred HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhh---hhhhh--cCCcEEEEEEecccccCcHHH
Confidence 8877766666778999999999984433222221 11111 122357889999999975543
No 310
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.2e-09 Score=86.28 Aligned_cols=127 Identities=23% Similarity=0.330 Sum_probs=93.7
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCC---------------CCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDT---------------FEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (154)
.+.+...++.++.+..-|||||+..|+..+ +.+...+.|+|.....+..-.+.+.++++|+|||-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 445567899999999999999999987542 13445677777777776666678899999999999
Q ss_pred cccccccccccCccEEEEEEECCC---cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC-CCchhhhhhhhh
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK-VCPWRLFLSGFW 143 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl-~~~~~~~~~~~~ 143 (154)
+|........+-+|++++++|+.. .++..-+++.|.+. ...++|.||+|. +.+-+....|.|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~---------~~~~lvinkidrl~~el~lsp~ea~ 149 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEG---------LKPILVINKIDRLITELKLSPQEAY 149 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHcc---------CceEEEEehhhhHHHHHhcChHHHH
Confidence 999999888899999999999875 33444445444433 346899999994 334444444443
No 311
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.1e-08 Score=75.52 Aligned_cols=120 Identities=23% Similarity=0.308 Sum_probs=74.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--------CC--cceeeeEEEEEEECCeEEEEEEEeCCCccc--------
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--------SP--TIGVDFKIKHVALGGKKMKLAIWDTAGQER-------- 73 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------- 73 (154)
-.+.++++|++|.|||||+|.|+....... .+ +..+........-++-.+.+++.||||.-+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 348999999999999999999988755211 11 222233333333357788999999999111
Q ss_pred ----------cc-------cccccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 74 ----------FR-------TLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 74 ----------~~-------~~~~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++ ...+..+. +.|+|++-+..+.. .+..+.-...+.+ ....++|-|.-|.|...+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL-----SKKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH-----hccccccceeeccccCCH
Confidence 10 11111222 57999999987653 2333322122222 235678888999999877
Q ss_pred hhh
Q 031704 135 WRL 137 (154)
Q Consensus 135 ~~~ 137 (154)
.+.
T Consensus 174 ~El 176 (366)
T KOG2655|consen 174 DEL 176 (366)
T ss_pred HHH
Confidence 665
No 312
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.97 E-value=1.8e-08 Score=74.02 Aligned_cols=121 Identities=19% Similarity=0.325 Sum_probs=74.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-----------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---c-
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---R- 75 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~- 75 (154)
.-.++|+++|+.|.|||||+|.|++..... ..++..+......+.-++..+.+++.||||--++ .
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 456999999999999999999999874411 1223333333344444677889999999991110 0
Q ss_pred ----------cccccc------------c--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704 76 ----------TLTSSY------------Y--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (154)
Q Consensus 76 ----------~~~~~~------------~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl 131 (154)
+....+ + .+.|+|++-+..+.. .+..+.- ..++.. .....+|-|.-|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DI---e~Mk~l--s~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDI---EAMKRL--SKRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHH---HHHHHH--hcccCeeeeeecccc
Confidence 001111 1 246999999987652 3333322 222222 234568889999999
Q ss_pred CCchhh
Q 031704 132 VCPWRL 137 (154)
Q Consensus 132 ~~~~~~ 137 (154)
...++.
T Consensus 175 lT~~El 180 (373)
T COG5019 175 LTDDEL 180 (373)
T ss_pred CCHHHH
Confidence 776654
No 313
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.2e-09 Score=74.86 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=81.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-cccc--ccccccCccEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTL--TSSYYRGAQGI 88 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~--~~~~~~~~~~~ 88 (154)
..++|+++|...+||||+-.-++.+..+..+-...-|.....=.+.+.-+.+.+||.||+-. |... ....++++.+.
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 34679999999999999888777665544333322222222222344667899999999753 3332 34568899999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++|+|+.+ +-.+.+..+..-.-+.+.-++++.+-+..+|.|-..+
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd 150 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD 150 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence 99999775 4455665533333344556788999999999997543
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.4e-09 Score=80.06 Aligned_cols=83 Identities=23% Similarity=0.223 Sum_probs=64.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC----------------eEEEEEEEeCCCc-----
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG----------------KKMKLAIWDTAGQ----- 71 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~----- 71 (154)
+++.++|.||+|||||+|.++.... ...+|..+++.......+.. ....++++|++|-
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 6899999999999999999998887 57788888777666665521 1346899999882
Q ss_pred --ccccccccccccCccEEEEEEECCC
Q 031704 72 --ERFRTLTSSYYRGAQGIIMVYDVTR 96 (154)
Q Consensus 72 --~~~~~~~~~~~~~~~~~v~v~d~~~ 96 (154)
+..-+.....+|++|+++.|.++..
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2344456666899999999999863
No 315
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.91 E-value=4.8e-09 Score=70.68 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=43.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (154)
..++++++|.+|+|||||+|++.+.......+..+.+.....+.++ ..+.++||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4479999999999999999999998775545555556665555554 35789999984
No 316
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.91 E-value=5.7e-09 Score=69.21 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=42.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (154)
...+++++|.+++||||++|++.++......++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45788999999999999999999877656666766665444444433 588999998
No 317
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.89 E-value=8.5e-09 Score=75.00 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=45.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (154)
...++++++|.+|+|||||+|++.+.+.....+..|.|.....+..+. .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 355899999999999999999999988755566666666665555543 4779999995
No 318
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.88 E-value=7.2e-09 Score=75.00 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=44.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (154)
...++++++|.+|+|||||+|++.+.+........|.|.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 346899999999999999999999887655555556665555555543 4689999996
No 319
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.88 E-value=2.3e-08 Score=69.73 Aligned_cols=115 Identities=20% Similarity=0.276 Sum_probs=69.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC----------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE----------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE--------- 72 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------- 72 (154)
-.++|+|+|.+|.|||||+|.++..... ....+..+...+..+.-++-..++++.||||--
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 4589999999999999999999865431 111233333334444456778899999999921
Q ss_pred ---------cccc--------ccccccc--CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 73 ---------RFRT--------LTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 73 ---------~~~~--------~~~~~~~--~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
++.+ .....+. +.++|++-+..+. .++..+.-.+.+.+.+ -..++-|.-|.|-.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----VVNVVPVIAKADTL 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----hheeeeeEeecccc
Confidence 1111 1111222 4688888887664 4444443323333332 23567788899964
No 320
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.84 E-value=7.7e-09 Score=76.29 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=49.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (154)
...++.++|-|++||||+||+|.+.......+..|.|.....+..+.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 447899999999999999999999998777777788888888877664 788999994
No 321
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.79 E-value=5.4e-08 Score=75.07 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=57.1
Q ss_pred EEEEEeCCCc-------------ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 62 KLAIWDTAGQ-------------ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 62 ~~~i~D~~g~-------------~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
...++|.||. +..-.+...++.+.+++|+|+.-. +++.-+. ..-.+...+...+...|+|+||
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERS-nVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERS-IVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---Ccchhhh-hHHHHHHhcCCCCCeeEEEEee
Confidence 4678899991 223344566788999999999644 3444333 2223333446677888999999
Q ss_pred CCCCCchhhhhhhhhhhhhccccc
Q 031704 129 VDKVCPWRLFLSGFWHFLLSKFYC 152 (154)
Q Consensus 129 ~Dl~~~~~~~~~~~~~~~~~~~~~ 152 (154)
.|+..+.-...+.+.....+..+|
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFP 512 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFP 512 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccc
Confidence 999765555666666666665555
No 322
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.78 E-value=2.1e-07 Score=65.49 Aligned_cols=90 Identities=24% Similarity=0.204 Sum_probs=63.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~ 83 (154)
..-+++++|-|++|||||+..+..-.. ...+..++.+.....+.+++. .+++.|.||.-+-. .......+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 346899999999999999999987666 555566655555556666654 57778999943211 12333467
Q ss_pred CccEEEEEEECCCcchHHHH
Q 031704 84 GAQGIIMVYDVTRRDTFTNL 103 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~ 103 (154)
.+|.+++|+|++..+-...+
T Consensus 139 taDlilMvLDatk~e~qr~~ 158 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREI 158 (364)
T ss_pred cccEEEEEecCCcchhHHHH
Confidence 89999999999976554433
No 323
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.78 E-value=2.5e-08 Score=74.27 Aligned_cols=83 Identities=19% Similarity=0.076 Sum_probs=60.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQER--- 73 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 73 (154)
+++.++|.|++|||||+|.+.+... ...+|.++.......+.+.+. ...+.+.|.||-..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999998876 234466655555556655442 23578899999432
Q ss_pred ----ccccccccccCccEEEEEEECCC
Q 031704 74 ----FRTLTSSYYRGAQGIIMVYDVTR 96 (154)
Q Consensus 74 ----~~~~~~~~~~~~~~~v~v~d~~~ 96 (154)
........++++|++++|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 23345556889999999999853
No 324
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.3e-08 Score=80.57 Aligned_cols=114 Identities=22% Similarity=0.285 Sum_probs=78.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEE--EEE------------CC----eEEEEEEEeCCCccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKH--VAL------------GG----KKMKLAIWDTAGQER 73 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~------------~~----~~~~~~i~D~~g~~~ 73 (154)
+.+=++|+|+...|||-|+..+-+...+. ....|++..+.. ++. ++ +.--+.++||||++.
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqe-geaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQE-GEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccc-ccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 44668899999999999999887655421 222222222221 111 11 112377899999999
Q ss_pred ccccccccccCccEEEEEEECCCc---chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|..+..+...-||.+|+|+|+... .+.+.+ ++++ ..+.|+||.+||+|....+
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR----~rktpFivALNKiDRLYgw 608 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLR----MRKTPFIVALNKIDRLYGW 608 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHH----hcCCCeEEeehhhhhhccc
Confidence 999999999999999999999863 333333 2333 3488999999999975444
No 325
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=9.1e-08 Score=70.11 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=72.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC---CCCCC---cceeeeEEE--EEEE-------CCeEEEEEEEeCCCcccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF---EELSP---TIGVDFKIK--HVAL-------GGKKMKLAIWDTAGQERFRT 76 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~---~~~~~---~~~~~~~~~--~~~~-------~~~~~~~~i~D~~g~~~~~~ 76 (154)
..+++.++|...+|||||.+++..-.. -+-.| ..+++.... .+.+ .++...+.++|+||+.....
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 348999999999999999999864322 01111 222222221 1221 24567889999999987766
Q ss_pred cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
......+-.|..++|+|+.....-..+.-+..-. .-....++|.||+|+..+
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~------~~c~klvvvinkid~lpE 137 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE------LLCKKLVVVINKIDVLPE 137 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhh------hhccceEEEEeccccccc
Confidence 6665556679999999998644333222211111 112336888999998654
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.76 E-value=1.9e-08 Score=68.90 Aligned_cols=54 Identities=28% Similarity=0.469 Sum_probs=39.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (154)
.+++++|.+|+|||||+|+|.+... .......|.|.....+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 5799999999999999999997543 12233445555555555543 468999998
No 327
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.76 E-value=3.4e-08 Score=71.96 Aligned_cols=85 Identities=22% Similarity=0.206 Sum_probs=64.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC---------------eEEEEEEEeCCCcc---
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG---------------KKMKLAIWDTAGQE--- 72 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~--- 72 (154)
..+++.++|.|++|||||+|.+..... +...|..+++.....+.+.. .+..++++|++|-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 457999999999999999999999887 67778888776666655422 24569999998832
Q ss_pred ----cccccccccccCccEEEEEEECCC
Q 031704 73 ----RFRTLTSSYYRGAQGIIMVYDVTR 96 (154)
Q Consensus 73 ----~~~~~~~~~~~~~~~~v~v~d~~~ 96 (154)
..-......+|.+|+++.|.++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 233345556889999999998753
No 328
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=3.6e-08 Score=71.47 Aligned_cols=140 Identities=14% Similarity=0.087 Sum_probs=81.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------------------Cccee----eeEEEE-EEEC----CeEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-------------------PTIGV----DFKIKH-VALG----GKKMK 62 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~-------------------~~~~~----~~~~~~-~~~~----~~~~~ 62 (154)
+..++|-++|...-|||||..++.+--....+ ....+ .+.... .+.. .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 45699999999999999999998752110000 00000 000000 0001 11236
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh--hhh
Q 031704 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL--FLS 140 (154)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~--~~~ 140 (154)
+.|.|.||++-.-..+....--.|++++|+.++.+.-.-+..+ .+--+... .-..++++-||+||.++++. ...
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~E-Hl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~ 163 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTRE-HLMALEII---GIKNIIIVQNKIDLVSRERALENYE 163 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHH-HHHHHhhh---ccceEEEEecccceecHHHHHHHHH
Confidence 8889999998766655544444699999999986433323233 11112211 12358999999999877655 335
Q ss_pred hhhhhhhc------cccccC
Q 031704 141 GFWHFLLS------KFYCSS 154 (154)
Q Consensus 141 ~~~~~~~~------~~~~~S 154 (154)
++.+|..+ .++|||
T Consensus 164 qIk~FvkGt~Ae~aPIIPiS 183 (415)
T COG5257 164 QIKEFVKGTVAENAPIIPIS 183 (415)
T ss_pred HHHHHhcccccCCCceeeeh
Confidence 55555333 346665
No 329
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.73 E-value=6e-08 Score=69.03 Aligned_cols=62 Identities=19% Similarity=0.206 Sum_probs=50.4
Q ss_pred ccccccccccccCccEEEEEEECCCcc-hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhh
Q 031704 72 ERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLF 138 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 138 (154)
++++.+.+.+++++|++++|+|++++. ++..+.. |+..+.. .++|+++|+||+||.+++++.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~----~~i~~vIV~NK~DL~~~~~~~ 86 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEA----QNIEPIIVLNKIDLLDDEDME 86 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHH----CCCCEEEEEECcccCCCHHHH
Confidence 667778888899999999999999877 7888776 7765543 478999999999997665543
No 330
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.72 E-value=3.7e-08 Score=65.28 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=39.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (154)
...+++++|.+|+||||++|.+.+..........+.|........+ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 4578999999999999999999987653333333333333344443 2478899998
No 331
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.71 E-value=1.6e-08 Score=73.32 Aligned_cols=119 Identities=17% Similarity=0.135 Sum_probs=75.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc---------cccccccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ---------ERFRTLTS 79 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~---------~~~~~~~~ 79 (154)
.....-|+++|-++||||||++.|.+... +...-..+.+.........+ ...+.+.||.|. ..|+....
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 34556899999999999999999995554 44444444444444443332 224667799982 22333222
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCC----cEEEEEeCCCCC
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC----IKLLVGNKVDKV 132 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----~~ivv~nK~Dl~ 132 (154)
. ...+|.++.|.|++.++.-+.... ....+... ..++. .++=|-||+|..
T Consensus 254 e-VaeadlllHvvDiShP~ae~q~e~-Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e 307 (410)
T KOG0410|consen 254 E-VAEADLLLHVVDISHPNAEEQRET-VLHVLNQI-GVPSEPKLQNMIEVDNKIDYE 307 (410)
T ss_pred H-HhhcceEEEEeecCCccHHHHHHH-HHHHHHhc-CCCcHHHHhHHHhhccccccc
Confidence 2 457899999999999886555444 44444444 22222 456678888875
No 332
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.67 E-value=7e-07 Score=62.78 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=52.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCCCcceee--eEEEEEEEC-CeEEEEEEEeCCCcccccc------ccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TFEELSPTIGVD--FKIKHVALG-GKKMKLAIWDTAGQERFRT------LTS 79 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~ 79 (154)
....-|+|+|++++|||+|+|++++. .+........+| .+....+.. +....+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567899999999999999999998 663222212222 222222221 2346789999999543322 122
Q ss_pred ccccC--ccEEEEEEECCCcc
Q 031704 80 SYYRG--AQGIIMVYDVTRRD 98 (154)
Q Consensus 80 ~~~~~--~~~~v~v~d~~~~~ 98 (154)
..+.. ++++|+..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 22333 68787777765433
No 333
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.62 E-value=9e-08 Score=68.07 Aligned_cols=117 Identities=21% Similarity=0.142 Sum_probs=73.4
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRT 76 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~ 76 (154)
+..++++++++|.+++|||+|+|.++..+. ....+..+.+.....+.++. ++.+.|.|| .+++..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhH
Confidence 356779999999999999999999988766 23334666666666666654 566779999 123334
Q ss_pred cccccccCc---cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 77 LTSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 77 ~~~~~~~~~---~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
....++.+. -.+.++.|++-+- ........+. ++..+.|..+|.||||....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~----~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAW----LGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHH----HhhcCCCeEEeeehhhhhhh
Confidence 444444433 2344444544321 1111111122 23458899999999998533
No 334
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.61 E-value=4.8e-07 Score=69.73 Aligned_cols=86 Identities=17% Similarity=0.313 Sum_probs=62.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccC----ccE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRG----AQG 87 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~----~~~ 87 (154)
-.|+|+|..++|||||+.+|.+.+. ..++.+.+|....+.-. .....+.+|-..|...+..+....+.. --+
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~ 103 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTL 103 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccceE
Confidence 5899999999999999999986553 34555555554443222 234578999998877777777666653 268
Q ss_pred EEEEEECCCcchHH
Q 031704 88 IIMVYDVTRRDTFT 101 (154)
Q Consensus 88 ~v~v~d~~~~~s~~ 101 (154)
+|+|+|.+.+..+-
T Consensus 104 vvIvlDlS~PW~~~ 117 (472)
T PF05783_consen 104 VVIVLDLSKPWNIM 117 (472)
T ss_pred EEEEecCCChHHHH
Confidence 99999999877654
No 335
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=9.1e-09 Score=76.94 Aligned_cols=122 Identities=18% Similarity=0.239 Sum_probs=92.9
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCC--------CC---------CCCCcceeeeEEEEEEECCeEEEEEEEeCC
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDT--------FE---------ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~--------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (154)
.+...+..+|.++..-.+||||...|++.-. .. ......|++..+..+.++=+...++++|||
T Consensus 31 ~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtp 110 (753)
T KOG0464|consen 31 NPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTP 110 (753)
T ss_pred CCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCC
Confidence 3445567789999999999999999986421 10 111234677888888888888899999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+.+|+-...++++--|+++.|||.+-.-.-..+.. |.+. .+.++|-+.+.||.|...+
T Consensus 111 ghvdf~leverclrvldgavav~dasagve~qtltv-wrqa-----dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQA-----DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehhc-----cccCCchhhhhhhhhhhhh
Confidence 999999989999999999999999886544333333 6543 4557889999999998544
No 336
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=6.4e-07 Score=70.55 Aligned_cols=119 Identities=15% Similarity=0.216 Sum_probs=69.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCC-CCcceee----------------------------------------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EEL-SPTIGVD---------------------------------------- 48 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~-~~~~~~~---------------------------------------- 48 (154)
....||++.|..++||||++|+++-++. +.. .+++.+-
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3558999999999999999999986544 211 1111000
Q ss_pred --eEEEEEEECCeE-----EEEEEEeCCCcc---cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCC
Q 031704 49 --FKIKHVALGGKK-----MKLAIWDTAGQE---RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118 (154)
Q Consensus 49 --~~~~~~~~~~~~-----~~~~i~D~~g~~---~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (154)
.....+..+.+. -.+.++|.||-. ....-...+...+|++|+|.++.+..+..+ .+ ++.... ..
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~-Ff~~vs----~~ 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQ-FFHKVS----EE 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HH-HHHHhh----cc
Confidence 000011111110 137888999943 344445566778999999998776444322 33 222222 22
Q ss_pred CCcEEEEEeCCCCCCch
Q 031704 119 DCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 119 ~~~~ivv~nK~Dl~~~~ 135 (154)
+..+.++-||+|.....
T Consensus 261 KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASE 277 (749)
T ss_pred CCcEEEEechhhhhccc
Confidence 45567778899997553
No 337
>PRK12289 GTPase RsgA; Reviewed
Probab=98.58 E-value=1.1e-07 Score=70.86 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=35.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCcce-------eeeEEEEEEECCeEEEEEEEeCCC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIG-------VDFKIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~g 70 (154)
++++|++|+|||||+|+|++..........+ .|.....+.+.+.. .++||||
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG 233 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPG 233 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCC
Confidence 7999999999999999999765422222222 34444555554322 5789999
No 338
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=4.5e-07 Score=68.22 Aligned_cols=118 Identities=17% Similarity=0.095 Sum_probs=83.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
-|+..|.---|||||+..+.+... .......|++.....++..-....+.|+|.||++++-......+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 356678888999999999998776 334445566666666666655568899999999998888888888899999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+.++.-....... ...+... .....++|+||+|..++.+.
T Consensus 82 ~~deGl~~qtgEh--L~iLdll---gi~~giivltk~D~~d~~r~ 121 (447)
T COG3276 82 AADEGLMAQTGEH--LLILDLL---GIKNGIIVLTKADRVDEARI 121 (447)
T ss_pred eCccCcchhhHHH--HHHHHhc---CCCceEEEEeccccccHHHH
Confidence 9965433222222 2222222 22346899999999876533
No 339
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.57 E-value=1.8e-07 Score=69.17 Aligned_cols=62 Identities=16% Similarity=0.090 Sum_probs=37.4
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+.+.|+||+|.-.-. ......+|.++++.+....+...... ..+... .-++|.||+|+....
T Consensus 149 ~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k----~gi~E~------aDIiVVNKaDl~~~~ 210 (332)
T PRK09435 149 YDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK----KGIMEL------ADLIVINKADGDNKT 210 (332)
T ss_pred CCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH----hhhhhh------hheEEeehhcccchh
Confidence 568899999965222 12456799999997644443332221 112111 137999999997543
No 340
>PRK12288 GTPase RsgA; Reviewed
Probab=98.56 E-value=1.6e-07 Score=70.02 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=36.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCc-------ceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTFEELSPT-------IGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
++++|.+|+|||||+|+|++......... .+.|.....+.+.+.. .++||||...+
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 68999999999999999998755211111 1233444445554322 47899995443
No 341
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.4e-06 Score=57.50 Aligned_cols=113 Identities=21% Similarity=0.269 Sum_probs=65.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCC-Ccc------------------
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA-GQE------------------ 72 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~------------------ 72 (154)
..+||.+-|+||+||||++.++...--.....-. .+.+.++.-+++..-|.+.|+. |..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg--Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG--GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceee--eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 4589999999999999999988643221111112 3555666667777778888877 311
Q ss_pred ---ccc----ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704 73 ---RFR----TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (154)
Q Consensus 73 ---~~~----~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl 131 (154)
.+. .....+++.+|++++ |---+ .+.....+.+.+... .+.+.|++.+.++.+.
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~v-l~~~kpliatlHrrsr 142 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEV-LKSGKPLIATLHRRSR 142 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHH-hcCCCcEEEEEecccC
Confidence 111 112333445566554 43222 232233244555554 4567788888886643
No 342
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=4.6e-07 Score=77.02 Aligned_cols=111 Identities=20% Similarity=0.176 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC-----CCc--ceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-----SPT--IGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTS 79 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~ 79 (154)
=.+|+|++|+||||++++- +.+++-. ... .+.+.. ..+.+.++ ..++||+|..- ....|.
T Consensus 113 WYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 113 WYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecCC---EEEEcCCCccccCCCcccccHHHHH
Confidence 3688999999999999987 3334211 111 111221 23334443 45789999321 122233
Q ss_pred ccc---------cCccEEEEEEECCCcch-----H----HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 80 SYY---------RGAQGIIMVYDVTRRDT-----F----TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 80 ~~~---------~~~~~~v~v~d~~~~~s-----~----~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
.++ +-.+++|+++|+.+.-. . ..++. .++.+... ..-..|+.|+.||+|+.
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~-rl~el~~~-lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQ-RLQELREQ-LGARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHH-HHHHHHHH-hCCCCCEEEEEecchhh
Confidence 332 23699999999875321 1 12222 23333333 34578999999999986
No 343
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.50 E-value=1.4e-07 Score=62.62 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCC---CCCC----cceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFE---ELSP----TIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
.++++|++|||||||+|.|+..... .... ..+.|.....+.+++.. .++||||...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~ 99 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRS 99 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCc
Confidence 6789999999999999999987431 1111 11223334455554433 5779999543
No 344
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.48 E-value=3e-07 Score=65.50 Aligned_cols=55 Identities=25% Similarity=0.332 Sum_probs=35.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCC---CC----cceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL---SP----TIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
.++++|++|+|||||+|++.+...... .. ..+.|.....+.+.+ -.++||||-..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccc
Confidence 678999999999999999998654211 11 112333444444432 26889999644
No 345
>PRK13796 GTPase YqeH; Provisional
Probab=98.47 E-value=2.9e-07 Score=69.13 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=39.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (154)
.++.++|.+|+|||||+|+|+.... .......|.|.....+.+++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999986432 223444555566666666543 368899994
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.46 E-value=4.7e-07 Score=67.93 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=39.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (154)
.+++++|.+|+|||||+|++++... ...+...+.|.....+.+++. +.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 4899999999999999999997532 233444555555556655332 4689999943
No 347
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=1.1e-06 Score=64.35 Aligned_cols=122 Identities=19% Similarity=0.097 Sum_probs=84.8
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcC----------CC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD----------TF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
....++|--+|...-|||||.-.+..- ++ .......|++....++.+.....++-=.|+||+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 345588999999999999999887531 11 122345577777777776655556666799999998
Q ss_pred cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
...+...-.+.|++|+|..++|...-+.-..+ ++.+... -..+++..||.|+.++.+
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQTrEHl---LLArQVG--V~~ivvfiNKvD~V~d~e 187 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQTREHL---LLARQVG--VKHIVVFINKVDLVDDPE 187 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcchHHHH---HHHHHcC--CceEEEEEecccccCCHH
Confidence 87777777789999999999996554333331 2222212 246899999999995443
No 348
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.45 E-value=1.8e-07 Score=72.11 Aligned_cols=113 Identities=23% Similarity=0.356 Sum_probs=83.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
-..+|+.|+|..++|||+|+++++.+.+.......+. ...+++.+++....+.+.|..|... ..+-.+.|++||
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCCcCc-cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 3568999999999999999999999999444444433 3345666777888888888887332 334567899999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 130 (154)
|+.+.+..+++.+.. +.-.+..+..-..+|.++++++.=
T Consensus 102 vf~~~d~~s~q~v~~-l~~~l~~~r~r~~i~l~lvgtqd~ 140 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQA-LAHEMSSYRNISDLPLILVGTQDH 140 (749)
T ss_pred EEEeccccCHHHHHH-HHhhcccccccccchHHhhcCcch
Confidence 999999999998877 544544443455678888888643
No 349
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.44 E-value=8.9e-07 Score=64.89 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=37.6
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.+.+.|+||+|.-. .....+..+|.++++-... +-+.+.. ....+ ...|.++|+||+|+....
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~---~~~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~ 188 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPG---TGDDLQG-IKAGL------MEIADIYVVNKADGEGAT 188 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCC---ccHHHHH-HHHHH------hhhccEEEEEcccccchh
Confidence 46688999998431 1122456678888875433 2233333 22222 245679999999997654
No 350
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.43 E-value=1.2e-06 Score=58.41 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=37.2
Q ss_pred EEEEEEeCCCcccccccccc--------cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704 61 MKLAIWDTAGQERFRTLTSS--------YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl 131 (154)
....++|+||...-...... ..-+.+.++++.|+.+..........+..++... =++|.||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a-------d~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA-------DRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC-------CEEEEecccC
Confidence 45678899996433222211 1234799999999765433221123244444432 2679999996
No 351
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.42 E-value=5.1e-07 Score=69.04 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=48.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (154)
..+.|.+||-||+||||.||.|.+.+-...+.|.|-|.+...+.+.. .+-++|+||-
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 36899999999999999999999999878888888777777776654 4678899994
No 352
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.40 E-value=3.7e-08 Score=68.52 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=59.7
Q ss_pred EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------CcchHHHHHHHHHHHHhhhcCCCCCc
Q 031704 52 KHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCI 121 (154)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~ 121 (154)
.+++++...+.+.+.|.+|+...+..|..++.+...++++..++ +....++... ++..+..++.-.+.+
T Consensus 190 ~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nss 268 (359)
T KOG0085|consen 190 IEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSS 268 (359)
T ss_pred eecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCc
Confidence 34445556677889999999888888888888776666655443 2334455555 666666777788999
Q ss_pred EEEEEeCCCCCCch
Q 031704 122 KLLVGNKVDKVCPW 135 (154)
Q Consensus 122 ~ivv~nK~Dl~~~~ 135 (154)
+|+.+||.|+..+.
T Consensus 269 VIlFLNKkDlLEek 282 (359)
T KOG0085|consen 269 VILFLNKKDLLEEK 282 (359)
T ss_pred eEEEechhhhhhhh
Confidence 99999999997553
No 353
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.34 E-value=8.2e-07 Score=62.92 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=52.1
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc----------hHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD----------TFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
..+.++++|.+|+.+.+..|..++....++++|...++.. .+.+... +++.+=+......+.+|+.+||
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~-LFksiWnNRwL~tisvIlFLNK 278 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALN-LFKSIWNNRWLRTISVILFLNK 278 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHH-HHHHHHhhhHHhhhheeEEecH
Confidence 4567999999999999999999999999999999887522 1222222 1111111112335679999999
Q ss_pred CCCCCc
Q 031704 129 VDKVCP 134 (154)
Q Consensus 129 ~Dl~~~ 134 (154)
.|+..+
T Consensus 279 qDllae 284 (379)
T KOG0099|consen 279 QDLLAE 284 (379)
T ss_pred HHHHHH
Confidence 999644
No 354
>PRK00098 GTPase RsgA; Reviewed
Probab=98.30 E-value=1.8e-06 Score=63.25 Aligned_cols=56 Identities=30% Similarity=0.312 Sum_probs=35.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcc-------eeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTI-------GVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
.++++|++|+|||||+|.+++.......... ..|.....+.+++. ..++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 5889999999999999999976542211111 12333333344332 36789999643
No 355
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.25 E-value=2.8e-06 Score=61.89 Aligned_cols=59 Identities=29% Similarity=0.287 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCC-------CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (154)
-.++++|++|+|||||+|.+++....... ...+.|.....+.+.+. ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999986542111 11112333344444322 2588999986543
No 356
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.24 E-value=8.6e-06 Score=59.55 Aligned_cols=99 Identities=17% Similarity=0.289 Sum_probs=69.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEE--CCeEEEEEEEeCCCcccccccccccccCc----cE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL--GGKKMKLAIWDTAGQERFRTLTSSYYRGA----QG 87 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~----~~ 87 (154)
-+|+|+|..++|||||+.+|.+.+ .+.+..+..|....+.- .+...++.+|-.-|+.....+....+... ..
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 489999999999999999999877 44555555554444322 12345788898888877777666655533 57
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLY 114 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~ 114 (154)
++++.|++++..+.+..+.|..-++++
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~eh 157 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREH 157 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHH
Confidence 888999999966544444487666554
No 357
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=2.4e-06 Score=61.08 Aligned_cols=122 Identities=23% Similarity=0.393 Sum_probs=74.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCC-C--C--CcceeeeEEEEEEECCeEEEEEEEeCCCc-------cccccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-L--S--PTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ERFRTL 77 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~-~--~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~~~~ 77 (154)
..-.++|+.+|.+|-|||||+..|++-++.. . . |.......+....-.+-.+++.++||.|- +.|+.+
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 3456899999999999999999999988721 1 1 22222222223333566788999999991 111111
Q ss_pred -------cccc-------------c--cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 78 -------TSSY-------------Y--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 78 -------~~~~-------------~--~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
...+ + .+.++|++-+..+. .++..+.....+.+. ....||-|.-|.|-+...
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld-----skVNIIPvIAKaDtisK~ 192 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD-----SKVNIIPVIAKADTISKE 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh-----hhhhhHHHHHHhhhhhHH
Confidence 1111 1 24688888887664 556665543333332 345567777888876555
Q ss_pred hh
Q 031704 136 RL 137 (154)
Q Consensus 136 ~~ 137 (154)
+.
T Consensus 193 eL 194 (406)
T KOG3859|consen 193 EL 194 (406)
T ss_pred HH
Confidence 43
No 358
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=1.7e-06 Score=67.52 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=81.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-----C------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-----E------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-----~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
++.-+|-++..--+||||+.++.+.-.- . +.....|++......+..-+.+.++++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 4667888888899999999999763211 0 0011234444444433333477899999999999
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|.-...+.++--|++|++++....-.-.. ...|.+. .++ +.|.+...||.|.-.+..
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt-~tV~rQ~-~ry----~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQT-ETVWRQM-KRY----NVPRICFINKMDRMGASP 173 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhh-HHHHHHH-Hhc----CCCeEEEEehhhhcCCCh
Confidence 99888889999999999999765332222 2224433 333 789999999999865543
No 359
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=4.3e-06 Score=60.61 Aligned_cols=57 Identities=32% Similarity=0.387 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC---CCCC----CcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF---EELS----PTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (154)
-.+++|.+|+|||||+|+|..... .+.+ ...+.|.....+.+++.. .+.||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 467889999999999999987433 1111 112234445556664322 46799995443
No 360
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.12 E-value=7.4e-05 Score=56.66 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=69.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-------------CCCCC--cceeeeEE----------EEEEE-CCeEEEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-------------EELSP--TIGVDFKI----------KHVAL-GGKKMKLAI 65 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-------------~~~~~--~~~~~~~~----------~~~~~-~~~~~~~~i 65 (154)
..+-|.|+||..+|||||+.||...-. .+.-| ..|-+..+ ..+.+ ++-.+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 457899999999999999999964211 11111 11212222 22223 456789999
Q ss_pred EeCCCc--------c-----c------cccc----------ccccccC-c-cEEEEEEECC----CcchHHHHHHHHHHH
Q 031704 66 WDTAGQ--------E-----R------FRTL----------TSSYYRG-A-QGIIMVYDVT----RRDTFTNLADIWAKE 110 (154)
Q Consensus 66 ~D~~g~--------~-----~------~~~~----------~~~~~~~-~-~~~v~v~d~~----~~~s~~~~~~~~~~~ 110 (154)
+|+.|- . + |..- ....++. + =++|+--|-+ .++.+..+.+...+.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999980 0 0 1100 1122222 2 3555554432 244555555545556
Q ss_pred HhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 111 IDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 111 ~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+... ++|+++++|-.+-..+...
T Consensus 176 Lk~i----gKPFvillNs~~P~s~et~ 198 (492)
T PF09547_consen 176 LKEI----GKPFVILLNSTKPYSEETQ 198 (492)
T ss_pred HHHh----CCCEEEEEeCCCCCCHHHH
Confidence 6554 8899999998887665544
No 361
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.10 E-value=2.1e-05 Score=60.10 Aligned_cols=113 Identities=15% Similarity=0.117 Sum_probs=60.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh------cCCC----CCC-CC-----------cceeeeEEEEEEEC-------------
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFT------SDTF----EEL-SP-----------TIGVDFKIKHVALG------------- 57 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~------~~~~----~~~-~~-----------~~~~~~~~~~~~~~------------- 57 (154)
..-|+++|++|+||||++..|. +.+. .+. .+ ..+..+.......+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4678999999999999998875 2221 111 10 01111111000000
Q ss_pred CeEEEEEEEeCCCcccccccc----ccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCC
Q 031704 58 GKKMKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (154)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl 131 (154)
...+.+.++||+|........ ... ..+.+.+++|.|++....-..... .+... -.+--+|+||.|.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~----~F~~~----~~~~g~IlTKlD~ 251 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK----AFKDS----VDVGSVIITKLDG 251 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH----HHHhc----cCCcEEEEECccC
Confidence 024678999999954332211 111 224688999999876433222222 22211 1245688999998
Q ss_pred CC
Q 031704 132 VC 133 (154)
Q Consensus 132 ~~ 133 (154)
..
T Consensus 252 ~a 253 (429)
T TIGR01425 252 HA 253 (429)
T ss_pred CC
Confidence 43
No 362
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=1.3e-05 Score=59.72 Aligned_cols=121 Identities=22% Similarity=0.214 Sum_probs=75.6
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-----------------c-------ceeeeEEEEEEE--------
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-----------------T-------IGVDFKIKHVAL-------- 56 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~-----------------~-------~~~~~~~~~~~~-------- 56 (154)
...-.++++++|.-.+|||||+--|..+...+... + .|.+..-+.+.+
T Consensus 163 QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEE 242 (591)
T KOG1143|consen 163 QQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEE 242 (591)
T ss_pred ccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHH
Confidence 34467999999999999999998776543311110 1 111111111111
Q ss_pred --CCeEEEEEEEeCCCcccccccccccccC--ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 57 --GGKKMKLAIWDTAGQERFRTLTSSYYRG--AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 57 --~~~~~~~~i~D~~g~~~~~~~~~~~~~~--~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
....-.+.++|..|+..|.......+.. .|..+++.++...-.... ++ .+-.+.. -++|+.++.+|.|+.
T Consensus 243 i~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rE-HLgl~~A----L~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 243 IVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-RE-HLGLIAA----LNIPFFVLVTKMDLV 316 (591)
T ss_pred HHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HH-HHHHHHH----hCCCeEEEEEeeccc
Confidence 1122348899999999988776665553 588888888876544322 22 2223333 388999999999998
Q ss_pred Cch
Q 031704 133 CPW 135 (154)
Q Consensus 133 ~~~ 135 (154)
++.
T Consensus 317 ~~~ 319 (591)
T KOG1143|consen 317 DRQ 319 (591)
T ss_pred cch
Confidence 774
No 363
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.09 E-value=4.4e-06 Score=56.19 Aligned_cols=52 Identities=29% Similarity=0.471 Sum_probs=32.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDT 68 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 68 (154)
||++.|++|+||||++++++..--....+..| +.+....-++..+-+.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999987543111122222 44444445555666666666
No 364
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=1.3e-05 Score=61.70 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=81.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC------------C---CCCCCcceeeeEEEEEEE----------------CCeE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDT------------F---EELSPTIGVDFKIKHVAL----------------GGKK 60 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~------------~---~~~~~~~~~~~~~~~~~~----------------~~~~ 60 (154)
...++.++....-|||||...|..+. | ....+..+++..+..+.+ ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 45678899999999999999986432 1 111223344444443332 3456
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC-Cchhhhh
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV-CPWRLFL 139 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~-~~~~~~~ 139 (154)
+.++++|.||+.+|++.....+|-.|+.++|.|.-+.--.+.-.. +.+.+.+ .+..++++||.|.. -+-++..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV-LrQA~~E-----RIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV-LRQAIAE-----RIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH-HHHHHHh-----hccceEEeehhhHHHHhhcCCH
Confidence 789999999999999999999999999999999765322211111 2223322 23337899999962 2334555
Q ss_pred hhhhh
Q 031704 140 SGFWH 144 (154)
Q Consensus 140 ~~~~~ 144 (154)
+++|.
T Consensus 172 EeLyq 176 (842)
T KOG0469|consen 172 EELYQ 176 (842)
T ss_pred HHHHH
Confidence 55554
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=98.07 E-value=1.2e-05 Score=60.07 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=38.6
Q ss_pred cccccccCccEEEEEEECCCcchHH-HHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 77 LTSSYYRGAQGIIMVYDVTRRDTFT-NLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 77 ~~~~~~~~~~~~v~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+....+.++|.+++|+|+.++.... .+.. |+.... ..++|+++|+||+||.++.+
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~----~~~ip~ILVlNK~DLv~~~~ 137 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAE----STGLEIVLCLNKADLVSPTE 137 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEEchhcCChHH
Confidence 3444578899999999998766322 3333 544432 34789999999999986544
No 366
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.05 E-value=7.8e-06 Score=62.03 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=55.8
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCc----------chHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
....+.++|++|+...+..|..++...+++++|.++++. ..+.+... +++.+.......+.|++|++||
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~-lF~~i~~~~~~~~~~iil~lnK 312 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLN-LFESICNNPWFKNTPIILFLNK 312 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHH-HHHHHHTSGGGTTSEEEEEEE-
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHH-HHHHHHhCcccccCceEEeeec
Confidence 345788899999999999999999999999999998742 23555556 3344443335568899999999
Q ss_pred CCCCC
Q 031704 129 VDKVC 133 (154)
Q Consensus 129 ~Dl~~ 133 (154)
.|+..
T Consensus 313 ~D~f~ 317 (389)
T PF00503_consen 313 IDLFE 317 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99853
No 367
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.02 E-value=4.2e-06 Score=55.37 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=36.2
Q ss_pred cccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++....++++|++++|+|+.++...... . +...+ ...+.|+++|+||+|+.++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~----~~~~~p~iiv~NK~Dl~~~ 56 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYV----LELGKKLLIVLNKADLVPK 56 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHH----HhCCCcEEEEEEhHHhCCH
Confidence 44566677789999999999875433221 1 22222 2236799999999999654
No 368
>PRK00098 GTPase RsgA; Reviewed
Probab=98.02 E-value=1.6e-05 Score=58.23 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=37.7
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
..++|.+++|+|+.++.........|...+.. .++|+++|+||+||.+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~ 126 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDD 126 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCC
Confidence 47899999999998887766654446655543 47899999999999643
No 369
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=4.1e-05 Score=59.93 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=68.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCC-CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
..+=++|+||+|+|||||+.++...-. ... ..+..+| -+.+++..++++.+| .+..++. ...+=+|.++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~RRiTflEcp--~Dl~~mi-DvaKIaDLVl 138 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKTRRITFLECP--SDLHQMI-DVAKIADLVL 138 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------EeecceeEEEEEeCh--HHHHHHH-hHHHhhheeE
Confidence 446778999999999999999875432 111 1111111 134677789999999 3333332 2345589999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+++|.+-.-..+.. + +++.+..+ .-..++-|+|..||....
T Consensus 139 LlIdgnfGfEMETm-E-FLnil~~H---GmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 139 LLIDGNFGFEMETM-E-FLNILISH---GMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred EEeccccCceehHH-H-HHHHHhhc---CCCceEEEEeecccccCh
Confidence 99998764333322 2 44455444 223467789999997554
No 370
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.01 E-value=1.7e-05 Score=57.79 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=39.5
Q ss_pred cccCccEEEEEEECCCcc-hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 81 YYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.+.++|.+++|+|+.++. ++..+.. |+..+.. .++|+++|+||+||.++.
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~----~~ip~iIVlNK~DL~~~~ 125 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA----AGIEPVIVLTKADLLDDE 125 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH----cCCCEEEEEEHHHCCChH
Confidence 477899999999999887 7676666 6665543 368899999999997653
No 371
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.99 E-value=6.2e-06 Score=61.49 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=49.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (154)
..-+++.|+|-|++||||+||+|...+.....+..|.|.....+.++. .+.+.|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCc
Confidence 456899999999999999999999999988888888887777777664 567889999
No 372
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.98 E-value=8.1e-06 Score=53.21 Aligned_cols=55 Identities=13% Similarity=0.073 Sum_probs=36.7
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
...+.++|++++|+|+.++.+.... . +.+.+... ..+.|+++|+||+|+..+...
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~~ 60 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQR 60 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHHH
Confidence 3457889999999999887654321 1 22233322 146799999999999765543
No 373
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.94 E-value=1.4e-05 Score=57.89 Aligned_cols=59 Identities=19% Similarity=0.400 Sum_probs=42.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC-----CCCCCCCcceeeeEEEE-EEECCeEEEEEEEeCCC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD-----TFEELSPTIGVDFKIKH-VALGGKKMKLAIWDTAG 70 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g 70 (154)
+..+++.|+|-||+|||||+|.+-.. +........|+|..... +.+.++. .+.+.||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCC
Confidence 46799999999999999999987532 22445555666665555 4444433 478899999
No 374
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=2.3e-05 Score=66.15 Aligned_cols=111 Identities=24% Similarity=0.173 Sum_probs=61.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC-CC-----CCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccc
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTF-EE-----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSY 81 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~ 81 (154)
.+|||++|+||||++..--.+-. .. .....+ |.++. +.+.+ +-.++||.|... -...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence 57889999999998875322111 10 011111 22222 33444 346779999321 12223322
Q ss_pred ---------ccCccEEEEEEECCCcchH---------HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 82 ---------YRGAQGIIMVYDVTRRDTF---------TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 82 ---------~~~~~~~v~v~d~~~~~s~---------~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.+-.|++|+.+|+.+..+- ..++. -+++++.. -....|++|++||.|+..
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~-RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRA-RLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHH-HHHHHHHh-hccCCceEEEEecccccc
Confidence 2346999999998752221 11222 12333333 345779999999999964
No 375
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=9.3e-06 Score=58.93 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=48.0
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCC----cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.++.|.|+||++-.-..+....--.|++++++..+. +++-+.+... .+.. -..++++-||+||..+.+
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav---eiM~-----LkhiiilQNKiDli~e~~ 196 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV---EIMK-----LKHIIILQNKIDLIKESQ 196 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH---HHhh-----hceEEEEechhhhhhHHH
Confidence 368889999998765554443344588888877653 4455555441 2211 134799999999987765
Q ss_pred hh--hhhhhhh
Q 031704 137 LF--LSGFWHF 145 (154)
Q Consensus 137 ~~--~~~~~~~ 145 (154)
.. -+.+.+|
T Consensus 197 A~eq~e~I~kF 207 (466)
T KOG0466|consen 197 ALEQHEQIQKF 207 (466)
T ss_pred HHHHHHHHHHH
Confidence 42 2444444
No 376
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.88 E-value=4.1e-05 Score=51.54 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=37.4
Q ss_pred EEEEEEeCCCcccccccc----ccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 61 MKLAIWDTAGQERFRTLT----SSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+.+.++|++|........ ..+ ....+.+++|+|....... . + +...+.... + ...+|.||.|....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~--~-~-~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA--V-N-QAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH--H-H-HHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 457889999964322111 111 1248999999998654322 2 2 222332221 2 25677899998654
Q ss_pred h
Q 031704 135 W 135 (154)
Q Consensus 135 ~ 135 (154)
.
T Consensus 155 ~ 155 (173)
T cd03115 155 G 155 (173)
T ss_pred c
Confidence 3
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.85 E-value=4.7e-05 Score=55.11 Aligned_cols=68 Identities=18% Similarity=0.214 Sum_probs=38.5
Q ss_pred EEEEEEEeCCCccccccccc-------ccc-----cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEe
Q 031704 60 KMKLAIWDTAGQERFRTLTS-------SYY-----RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127 (154)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~-------~~~-----~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~n 127 (154)
.+.+.++||||......... ... ..+|..++|+|++... +.+.. ...+... - .+--+|.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~--~~~f~~~---~-~~~g~IlT 225 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ--AKVFNEA---V-GLTGIILT 225 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH--HHHHHhh---C-CCCEEEEE
Confidence 36789999999654322211 111 2378999999997532 22222 1222211 1 13478899
Q ss_pred CCCCCCch
Q 031704 128 KVDKVCPW 135 (154)
Q Consensus 128 K~Dl~~~~ 135 (154)
|.|....-
T Consensus 226 KlDe~~~~ 233 (272)
T TIGR00064 226 KLDGTAKG 233 (272)
T ss_pred ccCCCCCc
Confidence 99985443
No 378
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.84 E-value=1.9e-05 Score=53.96 Aligned_cols=54 Identities=22% Similarity=0.150 Sum_probs=38.6
Q ss_pred cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.+..++..+++++|++++|+|+++.... |...+.. ...+.|+++|+||+|+..+
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~--~~~~~~~ilV~NK~Dl~~~ 76 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRL--FGGNNPVILVGNKIDLLPK 76 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCc------cchhHHH--hcCCCcEEEEEEchhcCCC
Confidence 3577788889999999999999875421 2222222 1246799999999999754
No 379
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.84 E-value=2.1e-05 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
...-|+++|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4466888999999999999999754
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.84 E-value=0.00011 Score=54.28 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=19.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHh
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~ 34 (154)
...-++++|++|+||||++..+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA 135 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLA 135 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 34678899999999999998875
No 381
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.83 E-value=3.8e-05 Score=50.83 Aligned_cols=64 Identities=19% Similarity=-0.019 Sum_probs=37.7
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh--hhhhhhhhccccccC
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL--SGFWHFLLSKFYCSS 154 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~S 154 (154)
|++++|+|+.++.+.... +... ......+.|+++|+||+|+..+..+.. ..+.......++++|
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vS 66 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKIS 66 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEe
Confidence 689999999887654432 2221 111334689999999999976543321 123223334456655
No 382
>PRK13695 putative NTPase; Provisional
Probab=97.82 E-value=0.00025 Score=47.80 Aligned_cols=22 Identities=41% Similarity=0.715 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
+||++.|++|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998653
No 383
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.79 E-value=9.1e-05 Score=53.90 Aligned_cols=106 Identities=11% Similarity=0.196 Sum_probs=65.2
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------------
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------------- 72 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------------- 72 (154)
...+-.+++++|++|-|||+++++|.....+...+ .. ..+.|..+..|...
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-~~------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-DA------------ERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-CC------------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 33455789999999999999999999765422111 11 12234444554411
Q ss_pred --------cccccccccccCccEEEEEEECCC---cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 73 --------RFRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 73 --------~~~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
.........++...+=++++|--. ..+....+. ..+.++..+..-.+|+|.||++
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~-~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE-FLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH-HHHHHHHHhhccCCCeEEeccH
Confidence 112223455677888888988432 223334444 5666776666678999999975
No 384
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=6.2e-05 Score=56.67 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.++++|++|+||||++..|..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998864
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=97.75 E-value=0.0003 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=19.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHh
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~ 34 (154)
+..-|+++|++|+||||.+..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA 161 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLA 161 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999999766654
No 386
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.74 E-value=0.00025 Score=53.22 Aligned_cols=123 Identities=17% Similarity=0.131 Sum_probs=75.3
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC-------------cce--eeeEEEEEEECCe--------------
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-------------TIG--VDFKIKHVALGGK-------------- 59 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~-------------~~~--~~~~~~~~~~~~~-------------- 59 (154)
+....+.+.+.|....|||||+-.|..++..+... ..| .+.....+-+++.
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34456889999999999999999988765421110 001 1122222222221
Q ss_pred -------EEEEEEEeCCCcccccccc-cccc-cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704 60 -------KMKLAIWDTAGQERFRTLT-SSYY-RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (154)
Q Consensus 60 -------~~~~~i~D~~g~~~~~~~~-~~~~-~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 130 (154)
.--+.+.||.|++.+-... ...+ ++.|-.+++..+++.-+--.-.. +-.. ..-..|++++.||+|
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEH--Lgi~----~a~~lPviVvvTK~D 266 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEH--LGIA----LAMELPVIVVVTKID 266 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHh--hhhh----hhhcCCEEEEEEecc
Confidence 1237888999998764433 3333 46798899988887544222111 1111 234789999999999
Q ss_pred CCCchhh
Q 031704 131 KVCPWRL 137 (154)
Q Consensus 131 l~~~~~~ 137 (154)
+.+++..
T Consensus 267 ~~~ddr~ 273 (527)
T COG5258 267 MVPDDRF 273 (527)
T ss_pred cCcHHHH
Confidence 9877654
No 387
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.73 E-value=0.00025 Score=50.57 Aligned_cols=90 Identities=20% Similarity=0.156 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-------cccccccccCc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-------RTLTSSYYRGA 85 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~ 85 (154)
-++-++|-|++||||++..+.+... ...+..++.+.......+ +.-++.+.|.||.-+- ........|.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y--~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRY--KGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEec--cccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3788999999999999999988765 222233222222222222 3346788899993221 12234456889
Q ss_pred cEEEEEEECCCcchHHHHHH
Q 031704 86 QGIIMVYDVTRRDTFTNLAD 105 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~ 105 (154)
+.+++|+|+..+-+-..+.+
T Consensus 138 nli~~vld~~kp~~hk~~ie 157 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIE 157 (358)
T ss_pred cEEEEEeeccCcccHHHHHH
Confidence 99999999998876655544
No 388
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.69 E-value=0.00028 Score=38.45 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=26.6
Q ss_pred ccEEEEEEECCC--cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704 85 AQGIIMVYDVTR--RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (154)
Q Consensus 85 ~~~~v~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 130 (154)
.+++++++|++. .-+.+.... +++.++.. -.+.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLS-LFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHH-HHHHHHHH--TTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHH-HHHHHHHH--cCCCCEEEEEeccC
Confidence 589999999975 456666666 55555543 34889999999998
No 389
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.68 E-value=4.1e-05 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999764
No 390
>PRK08118 topology modulation protein; Reviewed
Probab=97.66 E-value=4.1e-05 Score=51.41 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
||+|+|++|||||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999988754
No 391
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.66 E-value=0.00011 Score=48.66 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=35.0
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
..+..+|++++|.|+.++..-.. .. +.+.+.. ...+.|+++|+||+|+.++..
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~-i~~~l~~--~~~~~p~ilVlNKiDl~~~~~ 56 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KH-VEEYLKK--EKPHKHLIFVLNKCDLVPTWV 56 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HH-HHHHHHh--ccCCCCEEEEEEchhcCCHHH
Confidence 34778999999999988632211 11 2233332 234579999999999976543
No 392
>PRK12288 GTPase RsgA; Reviewed
Probab=97.66 E-value=0.0002 Score=53.56 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=37.3
Q ss_pred cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
-++|.+++|+++....++..+.. |+.... ..++|+++|+||+||.++.
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~ 166 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDE 166 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcH
Confidence 34899999999988888877777 655443 3468899999999997654
No 393
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.66 E-value=0.00076 Score=49.99 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=30.1
Q ss_pred ccEEEEEEECCCcchHHH-HHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 85 AQGIIMVYDVTRRDTFTN-LADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
-|+++-|+|+.+...-.. ..+....++... =+||+||.|+.++..+
T Consensus 117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-------D~ivlNK~Dlv~~~~l 163 (323)
T COG0523 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-------DVIVLNKTDLVDAEEL 163 (323)
T ss_pred eceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-------cEEEEecccCCCHHHH
Confidence 589999999887544322 334233343322 2799999999987754
No 394
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00032 Score=49.83 Aligned_cols=117 Identities=25% Similarity=0.322 Sum_probs=66.6
Q ss_pred eEEEEEEcCCCC--CHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEE--EEEEeCCCcccccccccccccCccEE
Q 031704 13 LFKLLLIGDSGV--GKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMK--LAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 13 ~~ki~v~G~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
++-.+|+|.+|+ ||-+++.+|....+........ ......++++++.|. +.++=.+-.+++.--......-..++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~-~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESND-ATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccC-ceeeeceEecceeeecceeEEeecccchhccCCcccccceeeE
Confidence 357889999998 9999999999888732221111 111223334443332 22222221111110011111234789
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++||.+....++.+.. |....... .-++ ++.+|||.|....
T Consensus 83 vmvfdlse~s~l~alqd-wl~htdin--sfdi-llcignkvdrvph 124 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQD-WLPHTDIN--SFDI-LLCIGNKVDRVPH 124 (418)
T ss_pred EEEEeccchhhhHHHHh-hccccccc--cchh-heecccccccccc
Confidence 99999999988888888 87643322 1122 5678999998543
No 395
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.63 E-value=4.7e-05 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.||+++|+|||||||+...+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 396
>PRK07261 topology modulation protein; Provisional
Probab=97.60 E-value=5.7e-05 Score=50.93 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
||+|+|++|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998643
No 397
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00034 Score=50.81 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
+...|-+.|.||+|||||+..|..
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~ 73 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGR 73 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHH
Confidence 446899999999999999998853
No 398
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.59 E-value=0.00049 Score=44.08 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
..+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998754
No 399
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.59 E-value=0.00033 Score=51.83 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
=.++.|--|||||||+|+++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4567899999999999999864
No 400
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.58 E-value=0.00078 Score=40.21 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=54.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEEC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-TSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~v~v~d~ 94 (154)
+++.|..|+||||+...+...-..... +...++ .+.++|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 578899999999999887643221111 111222 5778899986543321 13446678999998886
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEe
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~n 127 (154)
... +......... ...........+..++.|
T Consensus 69 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 69 EAL-AVLGARRLTE-VVLELAIEGLRPVGVVVN 99 (99)
T ss_pred chh-hHHHHHHHHH-HHHHhhccCCceEEEEeC
Confidence 643 3344333122 222222334445555544
No 401
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.57 E-value=0.00032 Score=45.58 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=58.8
Q ss_pred EEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCc
Q 031704 18 LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR 97 (154)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~ 97 (154)
.-|..|+|||++.-.+...-........-.+... ....-.+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~- 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP- 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-
Confidence 4467899999987765422110000000000000 000111678999999753 3333456888999999998763
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 98 DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.++..... ..+.+... ....++.+|.|+++...
T Consensus 79 ~s~~~~~~-~l~~l~~~--~~~~~~~lVvN~~~~~~ 111 (139)
T cd02038 79 TSITDAYA-LIKKLAKQ--LRVLNFRVVVNRAESPK 111 (139)
T ss_pred hHHHHHHH-HHHHHHHh--cCCCCEEEEEeCCCCHH
Confidence 44444444 23344332 13456789999998543
No 402
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.56 E-value=7.1e-05 Score=48.55 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
|+++|++||||||++..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998743
No 403
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.54 E-value=0.00027 Score=55.43 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.-.|+++|+.|+||||++..|..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999988754
No 404
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.53 E-value=7.1e-05 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.=|+++|++|+|||||+++|+...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 348899999999999999998754
No 405
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.52 E-value=5.8e-05 Score=50.33 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=17.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
||++.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999765
No 406
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=8.3e-05 Score=52.53 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
=++++|++|||||||++-+.+-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999876543
No 407
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.48 E-value=6.7e-05 Score=50.48 Aligned_cols=53 Identities=19% Similarity=0.064 Sum_probs=34.8
Q ss_pred ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
......+.++|.+++|+|+.++...... . +...+ .+.|+++|+||+|+.++..
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~------~~k~~ilVlNK~Dl~~~~~ 63 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL------GNKPRIIVLNKADLADPKK 63 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh------cCCCEEEEEehhhcCChHH
Confidence 3345567889999999999875442211 1 11111 2468999999999975543
No 408
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=7.6e-05 Score=50.51 Aligned_cols=24 Identities=46% Similarity=0.690 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.=+++.||+|+||||+++.|+...
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 457889999999999999999765
No 409
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.44 E-value=0.00078 Score=41.31 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=46.7
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 16 LLLIG-DSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 16 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
|++.| ..|+||||+...+...-.....+ ...+..+. .+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~-------vl~~d~d~-~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKR-------VLLIDLDP-QYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCc-------EEEEeCCC-CCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56666 45899999877654321111111 11122221 1678899999864322 33667789999999986
Q ss_pred CCcchHHHHHH
Q 031704 95 TRRDTFTNLAD 105 (154)
Q Consensus 95 ~~~~s~~~~~~ 105 (154)
+ ..++.....
T Consensus 72 ~-~~s~~~~~~ 81 (104)
T cd02042 72 S-PLDLDGLEK 81 (104)
T ss_pred C-HHHHHHHHH
Confidence 5 455555555
No 410
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.43 E-value=0.00012 Score=51.38 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|++|||||||+|-+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999887544
No 411
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.41 E-value=0.00016 Score=46.61 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999888754
No 412
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.39 E-value=0.0009 Score=41.45 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=54.2
Q ss_pred cCCCCCHHHHHHHHhcCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc
Q 031704 20 GDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 98 (154)
Q Consensus 20 G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~ 98 (154)
+..|+||||+...+-..-... .....-.+.... ... .+.++|+|+.... .....+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~---~~~---D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ---FGD---DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC---CCC---CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCC-hH
Confidence 446799999777664322111 111111000000 001 6788999986432 2344677899999998755 44
Q ss_pred hHHHHHHHHHHHHhhhcCCC-CCcEEEEEeC
Q 031704 99 TFTNLADIWAKEIDLYSTNQ-DCIKLLVGNK 128 (154)
Q Consensus 99 s~~~~~~~~~~~~~~~~~~~-~~~~ivv~nK 128 (154)
+...+.. +.+.++.. ... ...+.+|+|+
T Consensus 78 s~~~~~~-~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKR-LLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHH-HHHHHHHc-CCCCcCceEEEecC
Confidence 5566655 55555554 222 4467788875
No 413
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.38 E-value=0.00021 Score=39.78 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
..++.|+.|+||||++..+..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999988753
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.35 E-value=0.00064 Score=52.39 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=19.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHh
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~ 34 (154)
....|+++|++|+||||.+..+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45689999999999999988764
No 415
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.35 E-value=0.00022 Score=40.68 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998764
No 416
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.35 E-value=0.00017 Score=54.28 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=41.3
Q ss_pred cccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.+.+..+...+.+.++++++|+|+.+.... |.+.+.... .+.|+++|+||+|+..+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~--~~~piilV~NK~DLl~k 105 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFV--GGNPVLLVGNKIDLLPK 105 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHh--CCCCEEEEEEchhhCCC
Confidence 456777788888899999999999765421 444554442 25789999999999753
No 417
>PRK06217 hypothetical protein; Validated
Probab=97.34 E-value=0.0002 Score=48.77 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.+|+|+|.+||||||+...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 418
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.32 E-value=0.0002 Score=49.71 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
.++++||+|||||||++.+.+-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 588999999999999999877554
No 419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.32 E-value=0.00065 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~ 34 (154)
.-.|+++||+|+||||-+-.|-
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLA 224 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLA 224 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 3478999999999998777654
No 420
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.31 E-value=0.0012 Score=49.53 Aligned_cols=26 Identities=31% Similarity=0.312 Sum_probs=21.6
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHh
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~ 34 (154)
..--..+++++|...+|||||+--|.
T Consensus 129 ~DF~E~RVAVVGNVDAGKSTLLGVLT 154 (641)
T KOG0463|consen 129 KDFIEARVAVVGNVDAGKSTLLGVLT 154 (641)
T ss_pred ccceeEEEEEEecccCCcceeEeeee
Confidence 34467899999999999999987664
No 421
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.30 E-value=0.00026 Score=44.93 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
-.++++|++|+|||+++..+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 3789999999999999999987655
No 422
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.29 E-value=0.0014 Score=49.10 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
.++.|--|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567899999999999999864
No 423
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.28 E-value=0.00023 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 424
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.28 E-value=0.00025 Score=48.12 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
=.++|+|++|+|||||+|-+.+-..
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccC
Confidence 3789999999999999998876443
No 425
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.28 E-value=0.00026 Score=48.25 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|++|+||||+++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999654
No 426
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.28 E-value=0.00026 Score=46.01 Aligned_cols=21 Identities=52% Similarity=0.773 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
|+++|++|+||||+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999864
No 427
>PRK01889 GTPase RsgA; Reviewed
Probab=97.26 E-value=0.00029 Score=52.94 Aligned_cols=56 Identities=30% Similarity=0.406 Sum_probs=0.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEE----EEeCCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLA----IWDTAG 70 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~D~~g 70 (154)
+++++|.+|+|||||+|.+.+............+...........-..+. ++||||
T Consensus 197 ~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG 256 (356)
T PRK01889 197 TVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPG 256 (356)
T ss_pred EEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCCc
No 428
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.26 E-value=0.00027 Score=44.93 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998864
No 429
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.26 E-value=0.0003 Score=45.86 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.|.|+|+.++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 430
>PRK14530 adenylate kinase; Provisional
Probab=97.25 E-value=0.00027 Score=49.35 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
.+|+++|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3899999999999999998853
No 431
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.25 E-value=0.0003 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
++|.++|+.|+|||||++++++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999988754
No 432
>PRK03839 putative kinase; Provisional
Probab=97.23 E-value=0.0003 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
+|+++|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 433
>PRK10867 signal recognition particle protein; Provisional
Probab=97.23 E-value=0.0032 Score=48.56 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHH
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSF 33 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l 33 (154)
...-|+++|++|+||||.+-.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3567899999999999965544
No 434
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.23 E-value=0.0003 Score=44.51 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
|++.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998754
No 435
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.00027 Score=52.43 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~ 37 (154)
++++||+||||||+++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7889999999999999987644
No 436
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.22 E-value=0.00045 Score=47.91 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
+...|++.|++|||||||.+.+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999865
No 437
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.22 E-value=0.00014 Score=54.70 Aligned_cols=83 Identities=17% Similarity=0.173 Sum_probs=52.7
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--ccccccccCccE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--TLTSSYYRGAQG 87 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~~~ 87 (154)
....+-+.++|-|++||||+||.|-.++.....|-.|.|. .+++---...+.++|+||...-. ......+ -+
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETK---VWQYItLmkrIfLIDcPGvVyps~dset~ivL---kG 377 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETK---VWQYITLMKRIFLIDCPGVVYPSSDSETDIVL---KG 377 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcch---HHHHHHHHhceeEecCCCccCCCCCchHHHHh---hc
Confidence 4567889999999999999999999998876666666432 12111112356788999943322 1122222 34
Q ss_pred EEEEEECCCcc
Q 031704 88 IIMVYDVTRRD 98 (154)
Q Consensus 88 ~v~v~d~~~~~ 98 (154)
+|=|-.+.+++
T Consensus 378 vVRVenv~~pe 388 (572)
T KOG2423|consen 378 VVRVENVKNPE 388 (572)
T ss_pred eeeeeecCCHH
Confidence 55566666654
No 438
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.21 E-value=0.00032 Score=47.42 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-|+++|++|+||||+++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48899999999999999998753
No 439
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.19 E-value=0.00036 Score=49.49 Aligned_cols=27 Identities=37% Similarity=0.578 Sum_probs=23.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
...++++|+|++|||||+|+..++...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 455899999999999999999988643
No 440
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.19 E-value=0.00038 Score=47.19 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.++++|+.|+|||||++.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3789999999999999998863
No 441
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.00025 Score=46.42 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
...++|+|.|.||+||||+..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 5668999999999999999999864
No 442
>PLN02200 adenylate kinase family protein
Probab=97.18 E-value=0.00053 Score=48.58 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
...+.|+++|+|||||||+..++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998753
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.18 E-value=0.00037 Score=43.21 Aligned_cols=20 Identities=45% Similarity=0.828 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 031704 15 KLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~ 34 (154)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57999999999999999976
No 444
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.17 E-value=0.0003 Score=48.89 Aligned_cols=20 Identities=55% Similarity=0.715 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031704 16 LLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~ 35 (154)
.+++||+|||||||+..+-.
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57899999999999998754
No 445
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.16 E-value=0.0005 Score=47.70 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
..-|+++|++|||||||++.+.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.16 E-value=0.00041 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.++++|++|+||||+++.+++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999998864
No 447
>PRK13949 shikimate kinase; Provisional
Probab=97.16 E-value=0.0004 Score=46.73 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|+++|++|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998764
No 448
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.00031 Score=52.69 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=33.0
Q ss_pred eEEEEEEEeCCCcccccc-ccccc-----ccCccEEEEEEECCCcchHHHHHHHHHHHH
Q 031704 59 KKMKLAIWDTAGQERFRT-LTSSY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEI 111 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~-~~~~~-----~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~ 111 (154)
+.+.+.|+||.|...... +.... .-+.|-+|+|.|++-.+.-+.....+.+.+
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~v 240 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETV 240 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhh
Confidence 456799999999543222 11111 224799999999987766655555355443
No 449
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.00046 Score=52.02 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=70.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC--------------------CCCC----------CcceeeeEEEEEEECCe
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--------------------EELS----------PTIGVDFKIKHVALGGK 59 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--------------------~~~~----------~~~~~~~~~~~~~~~~~ 59 (154)
....++++++|..-+||||+-..++...- ..+. ..-|-+.....-.+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 34568999999999999998887653210 0000 00011111111122223
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HH---HHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
..++.+.|.||+..|-..+..-..++|..++|+++...+. |+ +.+. ...+.. ...-...|++.||.|-.
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTRE-ha~Lak---t~gv~~lVv~vNKMddP 230 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK---TAGVKHLIVLINKMDDP 230 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhH-HHHHHH---hhccceEEEEEEeccCC
Confidence 3468899999999888777777888999999998743221 11 1111 111111 22344689999999964
No 450
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.14 E-value=0.00038 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
|.+.|++|||||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998653
No 451
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.13 E-value=0.00075 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=17.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHH
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSF 33 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l 33 (154)
...-++++|++|+||||.+-.+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakL 119 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKL 119 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHH
Confidence 3567899999999999995544
No 452
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.13 E-value=0.0004 Score=47.13 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 031704 14 FKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~ 34 (154)
.-|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999987
No 453
>PRK14532 adenylate kinase; Provisional
Probab=97.12 E-value=0.0004 Score=47.35 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|+++|+|||||||+..++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999864
No 454
>PRK14531 adenylate kinase; Provisional
Probab=97.10 E-value=0.00048 Score=46.89 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
.+|+++|+|||||||+...+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998854
No 455
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.10 E-value=0.00054 Score=47.55 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=23.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
......|.++|..|+|||||+++++..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998753
No 456
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.10 E-value=0.00054 Score=44.28 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|+++|++|+|||++++.+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.09 E-value=0.00046 Score=47.61 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcCC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~ 37 (154)
|++.|++|+||||+++.++..-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999877543
No 458
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.09 E-value=0.00046 Score=49.38 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
=++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367899999999999999876
No 459
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.09 E-value=0.00046 Score=47.43 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++++|++|||||||+|-+.+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 4788999999999999987653
No 460
>PRK02496 adk adenylate kinase; Provisional
Probab=97.09 E-value=0.00056 Score=46.47 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
.|++++|++|+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 461
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.09 E-value=0.00059 Score=46.04 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..-+.++|++|+|||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 346899999999999999999864
No 462
>PRK08233 hypothetical protein; Provisional
Probab=97.07 E-value=0.00051 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.-|++.|.+|+||||+.++|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56788999999999999998753
No 463
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.07 E-value=0.00052 Score=46.56 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999988754
No 464
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.07 E-value=0.00055 Score=47.73 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 67899999999999999998754
No 465
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.07 E-value=0.00052 Score=43.72 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
--+++.|++|+|||++++++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998754
No 466
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.06 E-value=0.00053 Score=48.42 Aligned_cols=22 Identities=36% Similarity=0.667 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
+||+++|+|||||||+...+..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998854
No 467
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.05 E-value=0.00052 Score=47.35 Aligned_cols=23 Identities=39% Similarity=0.600 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
--|+++|++|+|||||++.+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999998765
No 468
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.00054 Score=48.21 Aligned_cols=21 Identities=52% Similarity=0.733 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 588999999999999999876
No 469
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.04 E-value=0.00061 Score=47.49 Aligned_cols=23 Identities=39% Similarity=0.550 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998754
No 470
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.04 E-value=0.00063 Score=47.20 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998754
No 471
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00062 Score=48.09 Aligned_cols=23 Identities=48% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 472
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00057 Score=48.73 Aligned_cols=21 Identities=48% Similarity=0.612 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++||.|+|||||+..+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478899999999999999998
No 473
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.03 E-value=0.00064 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998754
No 474
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.02 E-value=0.00051 Score=46.87 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
+|+++|++|+||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
No 475
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.01 E-value=0.00069 Score=46.81 Aligned_cols=23 Identities=43% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+--
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998753
No 476
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.01 E-value=0.00062 Score=50.91 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
...+|+|.|++|+|||||++.++..
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3468999999999999999999864
No 477
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.01 E-value=0.00063 Score=46.47 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999988754
No 478
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.01 E-value=0.0006 Score=47.31 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998753
No 479
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.00 E-value=0.00057 Score=47.97 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031704 16 LLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~ 35 (154)
|.+.|++|||||||++.+.+
T Consensus 2 igI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHH
Confidence 57899999999999998865
No 480
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.00 E-value=0.00053 Score=47.69 Aligned_cols=21 Identities=33% Similarity=0.582 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
||+|+|+|||||||+..+|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 481
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.00 E-value=0.0089 Score=42.19 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=31.7
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+...+.+|.+++|.|.+. .++..... ..+..... . -.++.+|+||.|..
T Consensus 150 Rg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~el-g--~k~i~~V~NKv~e~ 198 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEEL-G--IKRIFVVLNKVDEE 198 (255)
T ss_pred cccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHh-C--CceEEEEEeeccch
Confidence 334567899999999774 44444333 23333332 1 26899999999976
No 482
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.99 E-value=0.00073 Score=46.99 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988753
No 483
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.99 E-value=0.00073 Score=46.95 Aligned_cols=23 Identities=43% Similarity=0.616 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 484
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.99 E-value=0.00052 Score=45.66 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
|+++|++|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999988754
No 485
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.00074 Score=47.21 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 486
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.98 E-value=0.00073 Score=47.91 Aligned_cols=23 Identities=43% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 68899999999999999988753
No 487
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.98 E-value=0.00073 Score=47.21 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999887654
No 488
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00077 Score=47.13 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 489
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.97 E-value=0.00066 Score=45.77 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=16.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
....+++.|++|+|||+|++++..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998764
No 490
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.97 E-value=0.00078 Score=46.83 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
No 491
>PRK04195 replication factor C large subunit; Provisional
Probab=96.96 E-value=0.0023 Score=50.06 Aligned_cols=24 Identities=42% Similarity=0.623 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.-.+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999764
No 492
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.96 E-value=0.0008 Score=47.24 Aligned_cols=23 Identities=48% Similarity=0.509 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 67899999999999999998764
No 493
>PRK00625 shikimate kinase; Provisional
Probab=96.96 E-value=0.00081 Score=45.44 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|+++|.+||||||+...+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 494
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.96 E-value=0.00082 Score=46.66 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998754
No 495
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.95 E-value=0.00072 Score=45.79 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031704 16 LLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~ 35 (154)
|+++|+|||||||+..++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998864
No 496
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.00083 Score=46.58 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 497
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.94 E-value=0.00084 Score=46.90 Aligned_cols=23 Identities=39% Similarity=0.510 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998764
No 498
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.94 E-value=0.00084 Score=45.30 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.+|+++|++|+||||+...+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 37999999999999999998753
No 499
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.94 E-value=0.00073 Score=50.50 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~ 38 (154)
+.++||+||||||+++.+-+-..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67899999999999999987543
No 500
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.94 E-value=0.00085 Score=47.24 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998754
Done!