Query 031704
Match_columns 154
No_of_seqs 122 out of 1419
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 06:11:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.3E-33 1.8E-37 192.8 13.2 142 1-144 1-143 (216)
2 3kkq_A RAS-related protein M-R 100.0 4.3E-29 1.5E-33 168.2 15.8 139 2-142 7-146 (183)
3 2hup_A RAS-related protein RAB 100.0 3.3E-29 1.1E-33 171.8 14.5 134 7-142 23-157 (201)
4 1z0f_A RAB14, member RAS oncog 100.0 8.1E-29 2.8E-33 165.9 15.8 134 7-142 9-143 (179)
5 1z06_A RAS-related protein RAB 100.0 1E-28 3.6E-33 167.4 15.4 132 9-141 16-149 (189)
6 2gf9_A RAS-related protein RAB 100.0 3.5E-28 1.2E-32 164.9 17.9 131 7-139 16-147 (189)
7 3t5g_A GTP-binding protein RHE 100.0 3.6E-28 1.2E-32 163.5 17.5 130 11-142 4-134 (181)
8 3tkl_A RAS-related protein RAB 100.0 3.4E-28 1.2E-32 165.4 17.3 130 8-139 11-141 (196)
9 2ew1_A RAS-related protein RAB 100.0 1.5E-28 5.2E-33 168.7 15.6 132 8-141 21-153 (201)
10 2efe_B Small GTP-binding prote 100.0 5E-28 1.7E-32 162.6 17.5 132 9-142 8-140 (181)
11 2a5j_A RAS-related protein RAB 100.0 3E-28 1E-32 165.5 16.3 133 7-141 15-148 (191)
12 3tw8_B RAS-related protein RAB 100.0 4.4E-28 1.5E-32 162.6 17.0 129 9-140 5-134 (181)
13 2il1_A RAB12; G-protein, GDP, 100.0 8E-29 2.7E-33 168.6 13.1 133 7-141 20-153 (192)
14 2nzj_A GTP-binding protein REM 100.0 2.1E-28 7.3E-33 163.4 15.0 129 12-141 3-133 (175)
15 2bme_A RAB4A, RAS-related prot 100.0 3.4E-28 1.2E-32 164.1 15.8 132 9-142 6-138 (186)
16 3cpj_B GTP-binding protein YPT 100.0 1.9E-28 6.3E-33 170.4 14.8 140 1-142 1-141 (223)
17 1zbd_A Rabphilin-3A; G protein 100.0 6.1E-28 2.1E-32 165.2 17.2 129 9-139 4-133 (203)
18 2fu5_C RAS-related protein RAB 100.0 1.3E-28 4.4E-33 165.9 13.5 130 10-141 5-135 (183)
19 2g6b_A RAS-related protein RAB 100.0 8.3E-28 2.8E-32 161.4 17.4 130 9-140 6-137 (180)
20 2bcg_Y Protein YP2, GTP-bindin 100.0 1E-27 3.5E-32 164.6 17.9 130 10-141 5-135 (206)
21 1r2q_A RAS-related protein RAB 100.0 4.4E-28 1.5E-32 161.0 15.5 130 11-142 4-134 (170)
22 2oil_A CATX-8, RAS-related pro 100.0 3.4E-28 1.2E-32 165.3 15.2 132 8-141 20-152 (193)
23 2fg5_A RAB-22B, RAS-related pr 100.0 4.1E-28 1.4E-32 165.0 15.0 133 8-142 18-151 (192)
24 1z0j_A RAB-22, RAS-related pro 100.0 1.1E-27 3.7E-32 159.2 16.7 128 11-140 4-132 (170)
25 1ek0_A Protein (GTP-binding pr 100.0 7.7E-28 2.6E-32 159.8 15.9 121 12-134 2-123 (170)
26 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.3E-27 4.6E-32 159.9 17.1 122 10-132 4-129 (177)
27 1z08_A RAS-related protein RAB 100.0 3.9E-28 1.3E-32 161.4 13.9 130 10-141 3-133 (170)
28 2fn4_A P23, RAS-related protei 100.0 5.9E-28 2E-32 162.0 14.7 131 10-142 6-137 (181)
29 3bc1_A RAS-related protein RAB 100.0 1.2E-27 4.2E-32 162.0 16.1 130 9-139 7-147 (195)
30 3oes_A GTPase rhebl1; small GT 100.0 7.5E-28 2.6E-32 164.8 15.0 131 9-141 20-151 (201)
31 2y8e_A RAB-protein 6, GH09086P 100.0 7.4E-28 2.5E-32 161.2 14.5 129 10-140 11-140 (179)
32 1x3s_A RAS-related protein RAB 100.0 2.5E-27 8.6E-32 160.8 17.0 124 9-133 11-135 (195)
33 1c1y_A RAS-related protein RAP 100.0 6.7E-28 2.3E-32 159.8 13.8 128 13-142 3-131 (167)
34 2bov_A RAla, RAS-related prote 100.0 1.1E-27 3.8E-32 164.0 15.1 140 1-142 1-142 (206)
35 1z2a_A RAS-related protein RAB 100.0 1E-27 3.5E-32 159.0 14.4 126 11-139 3-129 (168)
36 3cbq_A GTP-binding protein REM 100.0 5.3E-28 1.8E-32 165.1 13.0 134 8-142 18-153 (195)
37 2o52_A RAS-related protein RAB 100.0 6.5E-28 2.2E-32 165.1 13.3 132 8-141 20-152 (200)
38 3q72_A GTP-binding protein RAD 100.0 1.1E-27 3.9E-32 158.7 14.1 128 13-142 2-129 (166)
39 3q3j_B RHO-related GTP-binding 100.0 1.3E-27 4.5E-32 165.3 14.9 125 7-134 21-146 (214)
40 1g16_A RAS-related protein SEC 100.0 1.7E-27 5.9E-32 158.2 14.6 119 12-132 2-121 (170)
41 4dsu_A GTPase KRAS, isoform 2B 100.0 4.5E-27 1.5E-31 158.8 16.8 123 11-134 2-124 (189)
42 1kao_A RAP2A; GTP-binding prot 100.0 1.5E-27 5.1E-32 157.8 14.1 127 13-141 3-130 (167)
43 3reg_A RHO-like small GTPase; 100.0 4.3E-27 1.5E-31 160.0 16.7 124 8-134 18-142 (194)
44 3c5c_A RAS-like protein 12; GD 100.0 1.3E-27 4.5E-32 162.0 14.0 131 9-142 17-150 (187)
45 3dz8_A RAS-related protein RAB 100.0 8.4E-29 2.9E-33 168.2 7.6 132 7-140 17-149 (191)
46 3l0i_B RAS-related protein RAB 100.0 2E-28 7E-33 167.4 8.9 129 9-139 29-158 (199)
47 3cph_A RAS-related protein SEC 100.0 5.7E-27 1.9E-31 161.3 16.0 123 8-132 15-138 (213)
48 2p5s_A RAS and EF-hand domain 100.0 9.8E-28 3.3E-32 164.0 11.8 123 8-132 23-146 (199)
49 3q85_A GTP-binding protein REM 100.0 3.2E-27 1.1E-31 157.0 14.0 129 13-142 2-132 (169)
50 1vg8_A RAS-related protein RAB 100.0 6.6E-27 2.3E-31 160.3 15.7 123 10-133 5-131 (207)
51 1gwn_A RHO-related GTP-binding 100.0 4.7E-27 1.6E-31 161.7 14.9 123 8-133 23-146 (205)
52 1u8z_A RAS-related protein RAL 100.0 3.2E-27 1.1E-31 156.4 13.5 129 12-142 3-132 (168)
53 3ihw_A Centg3; RAS, centaurin, 100.0 6.1E-27 2.1E-31 158.5 15.2 125 8-140 15-142 (184)
54 2atx_A Small GTP binding prote 99.9 1.4E-26 4.7E-31 157.5 16.5 123 9-134 14-137 (194)
55 3gj0_A GTP-binding nuclear pro 99.9 2.4E-27 8.1E-32 164.5 13.0 127 6-135 8-135 (221)
56 1m7b_A RND3/RHOE small GTP-bin 99.9 8.6E-27 2.9E-31 157.4 15.0 121 10-133 4-125 (184)
57 2a9k_A RAS-related protein RAL 99.9 4.7E-27 1.6E-31 158.3 13.7 130 10-141 15-145 (187)
58 1ky3_A GTP-binding protein YPT 99.9 6.1E-27 2.1E-31 157.1 14.0 124 10-134 5-133 (182)
59 2f7s_A C25KG, RAS-related prot 99.9 1.1E-27 3.9E-32 165.5 10.7 132 8-140 20-162 (217)
60 2gco_A H9, RHO-related GTP-bin 99.9 2.2E-26 7.7E-31 157.5 16.7 122 10-134 22-144 (201)
61 2q3h_A RAS homolog gene family 99.9 9.6E-27 3.3E-31 159.0 14.8 123 9-134 16-139 (201)
62 2yc2_C IFT27, small RAB-relate 99.9 1.9E-27 6.4E-32 163.0 10.9 131 11-142 18-156 (208)
63 2g3y_A GTP-binding protein GEM 99.9 1E-26 3.5E-31 160.7 14.7 132 9-141 33-167 (211)
64 2hxs_A RAB-26, RAS-related pro 99.9 2.5E-27 8.4E-32 158.8 11.1 129 11-140 4-136 (178)
65 3con_A GTPase NRAS; structural 99.9 4.2E-26 1.4E-30 154.5 17.2 123 9-133 17-140 (190)
66 2atv_A RERG, RAS-like estrogen 99.9 8.2E-27 2.8E-31 159.0 13.8 129 11-142 26-155 (196)
67 2j1l_A RHO-related GTP-binding 99.9 1.2E-26 4.1E-31 160.4 14.7 123 10-135 31-154 (214)
68 2iwr_A Centaurin gamma 1; ANK 99.9 2.6E-26 8.8E-31 154.0 14.9 125 11-142 5-133 (178)
69 1mh1_A RAC1; GTP-binding, GTPa 99.9 2.7E-26 9.1E-31 154.6 15.0 120 12-134 4-124 (186)
70 4gzl_A RAS-related C3 botulinu 99.9 1.6E-26 5.4E-31 158.7 13.7 124 10-136 27-151 (204)
71 2j0v_A RAC-like GTP-binding pr 99.9 2E-26 6.9E-31 158.7 14.1 123 11-136 7-130 (212)
72 3clv_A RAB5 protein, putative; 99.9 3.8E-26 1.3E-30 155.7 15.0 127 11-142 5-169 (208)
73 1f6b_A SAR1; gtpases, N-termin 99.9 2.4E-26 8E-31 157.2 13.8 118 11-133 23-140 (198)
74 2ce2_X GTPase HRAS; signaling 99.9 8.9E-26 3.1E-30 149.0 16.0 119 13-133 3-122 (166)
75 1upt_A ARL1, ADP-ribosylation 99.9 7.3E-26 2.5E-30 150.6 15.6 118 12-134 6-123 (171)
76 4bas_A ADP-ribosylation factor 99.9 1.8E-26 6.3E-31 157.1 12.7 124 6-134 10-142 (199)
77 2erx_A GTP-binding protein DI- 99.9 2.9E-26 9.9E-31 152.4 13.2 126 12-139 2-129 (172)
78 1m2o_B GTP-binding protein SAR 99.9 1.2E-25 4E-30 152.8 16.0 118 11-133 21-138 (190)
79 2fv8_A H6, RHO-related GTP-bin 99.9 9E-26 3.1E-30 155.2 15.5 121 11-134 23-144 (207)
80 4djt_A GTP-binding nuclear pro 99.9 1.9E-26 6.5E-31 159.5 12.0 133 8-142 6-140 (218)
81 3t1o_A Gliding protein MGLA; G 99.9 1.1E-26 3.9E-31 157.7 10.0 126 6-134 7-150 (198)
82 1r8s_A ADP-ribosylation factor 99.9 2.5E-26 8.6E-31 151.9 11.3 116 14-134 1-116 (164)
83 2cjw_A GTP-binding protein GEM 99.9 1.3E-25 4.5E-30 152.9 15.2 130 11-141 4-136 (192)
84 2h17_A ADP-ribosylation factor 99.9 7.3E-26 2.5E-30 152.5 13.2 123 7-134 15-137 (181)
85 1zd9_A ADP-ribosylation factor 99.9 7E-26 2.4E-30 153.5 12.4 122 8-134 17-139 (188)
86 2gf0_A GTP-binding protein DI- 99.9 1.2E-25 3.9E-30 153.2 13.4 121 11-133 6-128 (199)
87 3bwd_D RAC-like GTP-binding pr 99.9 1.2E-26 4.1E-31 155.9 8.1 123 11-136 6-129 (182)
88 2b6h_A ADP-ribosylation factor 99.9 1.3E-25 4.6E-30 152.7 13.3 120 10-134 26-145 (192)
89 2x77_A ADP-ribosylation factor 99.9 9.4E-26 3.2E-30 152.7 12.4 119 11-134 20-138 (189)
90 1ksh_A ARF-like protein 2; sma 99.9 1.9E-25 6.5E-30 150.8 13.9 120 11-135 16-135 (186)
91 2h57_A ADP-ribosylation factor 99.9 3.1E-25 1E-29 150.4 14.0 123 7-134 15-141 (190)
92 1fzq_A ADP-ribosylation factor 99.9 1.1E-25 3.9E-30 151.7 11.8 120 11-135 14-133 (181)
93 1zj6_A ADP-ribosylation factor 99.9 2.3E-25 7.9E-30 150.7 12.3 119 11-134 14-132 (187)
94 2f9l_A RAB11B, member RAS onco 99.9 3.1E-24 1.1E-28 146.6 16.0 127 11-139 3-130 (199)
95 1moz_A ARL1, ADP-ribosylation 99.9 5.5E-25 1.9E-29 148.0 11.7 119 11-134 16-134 (183)
96 3llu_A RAS-related GTP-binding 99.9 2.3E-25 7.9E-30 151.9 10.0 123 7-134 14-144 (196)
97 1oix_A RAS-related protein RAB 99.9 6.5E-24 2.2E-28 144.3 15.5 130 8-139 24-154 (191)
98 2zej_A Dardarin, leucine-rich 99.9 2.6E-25 8.8E-30 150.3 8.4 122 13-137 2-130 (184)
99 2wkq_A NPH1-1, RAS-related C3 99.9 6.6E-24 2.2E-28 154.9 14.0 120 12-134 154-274 (332)
100 2fh5_B SR-beta, signal recogni 99.9 3.5E-24 1.2E-28 147.7 11.8 123 11-135 5-131 (214)
101 3r7w_A Gtpase1, GTP-binding pr 99.9 5.3E-24 1.8E-28 154.6 12.9 118 12-133 2-129 (307)
102 3th5_A RAS-related C3 botulinu 99.9 2.5E-26 8.7E-31 157.4 0.0 122 11-135 28-150 (204)
103 3o47_A ADP-ribosylation factor 99.9 4.2E-24 1.4E-28 156.5 11.8 120 11-135 163-282 (329)
104 3lvq_E ARF-GAP with SH3 domain 99.9 2E-23 6.9E-28 160.3 14.6 119 11-134 320-438 (497)
105 2lkc_A Translation initiation 99.9 6.3E-23 2.2E-27 137.2 13.2 116 11-134 6-122 (178)
106 2dyk_A GTP-binding protein; GT 99.9 1.6E-22 5.6E-27 133.1 13.9 132 14-154 2-142 (161)
107 3c5h_A Glucocorticoid receptor 99.9 3.4E-24 1.2E-28 151.9 5.2 129 8-137 14-216 (255)
108 1nrj_B SR-beta, signal recogni 99.9 2E-23 6.9E-28 144.2 6.8 118 10-137 9-138 (218)
109 3iev_A GTP-binding protein ERA 99.9 1.4E-22 4.7E-27 147.3 11.2 120 8-133 5-136 (308)
110 3r7w_B Gtpase2, GTP-binding pr 99.9 2.9E-23 9.8E-28 150.8 7.5 113 15-134 1-121 (331)
111 1svi_A GTP-binding protein YSX 99.9 2.2E-22 7.4E-27 136.6 10.4 120 9-137 19-152 (195)
112 2wji_A Ferrous iron transport 99.9 3.7E-22 1.3E-26 132.5 10.7 114 13-136 3-125 (165)
113 2ged_A SR-beta, signal recogni 99.9 2.9E-23 1E-27 140.8 5.4 118 10-137 45-174 (193)
114 1wf3_A GTP-binding protein; GT 99.9 8.3E-22 2.8E-26 142.7 12.4 120 11-136 5-134 (301)
115 2qu8_A Putative nucleolar GTP- 99.9 1E-21 3.5E-26 136.8 11.8 123 11-137 27-160 (228)
116 2gj8_A MNME, tRNA modification 99.9 8E-22 2.7E-26 131.9 9.9 117 12-133 3-129 (172)
117 2cxx_A Probable GTP-binding pr 99.9 1.4E-22 4.6E-27 136.9 5.2 116 14-135 2-138 (190)
118 3gee_A MNME, tRNA modification 99.9 1E-21 3.5E-26 149.8 10.1 137 12-154 232-378 (476)
119 3pqc_A Probable GTP-binding pr 99.9 2.5E-21 8.7E-26 131.0 10.5 119 8-135 18-149 (195)
120 2wjg_A FEOB, ferrous iron tran 99.9 2E-21 7E-26 131.1 9.5 115 12-136 6-129 (188)
121 3iby_A Ferrous iron transport 99.9 9.4E-22 3.2E-26 139.5 8.2 112 14-135 2-126 (256)
122 2hjg_A GTP-binding protein ENG 99.9 3.6E-22 1.2E-26 151.2 5.8 134 14-154 4-145 (436)
123 3def_A T7I23.11 protein; chlor 99.9 2.8E-21 9.5E-26 137.4 10.0 123 11-136 34-168 (262)
124 3a1s_A Iron(II) transport prot 99.9 5.2E-21 1.8E-25 135.8 11.4 117 11-137 3-128 (258)
125 3dpu_A RAB family protein; roc 99.9 2E-21 6.7E-26 150.5 9.9 126 10-141 38-172 (535)
126 1mky_A Probable GTP-binding pr 99.9 1.3E-21 4.5E-26 148.3 8.6 133 14-154 2-146 (439)
127 4dhe_A Probable GTP-binding pr 99.8 1.5E-21 5.2E-26 135.1 7.0 123 9-137 25-162 (223)
128 3i8s_A Ferrous iron transport 99.8 3.7E-21 1.3E-25 137.6 8.4 114 13-136 3-129 (274)
129 4dcu_A GTP-binding protein ENG 99.8 1.8E-21 6E-26 148.2 5.3 136 12-154 22-165 (456)
130 1h65_A Chloroplast outer envel 99.8 1.9E-20 6.5E-25 133.6 10.3 126 11-137 37-172 (270)
131 3lxx_A GTPase IMAP family memb 99.8 1E-20 3.6E-25 132.7 8.4 125 8-137 24-163 (239)
132 3b1v_A Ferrous iron uptake tra 99.8 3.7E-21 1.3E-25 137.5 5.9 112 13-135 3-123 (272)
133 3k53_A Ferrous iron transport 99.8 1.6E-20 5.5E-25 134.1 9.1 114 13-135 3-125 (271)
134 3qq5_A Small GTP-binding prote 99.8 1.7E-20 5.7E-25 141.2 7.0 120 9-137 30-158 (423)
135 2hjg_A GTP-binding protein ENG 99.8 2.5E-20 8.5E-25 141.2 8.0 119 11-137 173-304 (436)
136 3lxw_A GTPase IMAP family memb 99.8 4.7E-20 1.6E-24 130.1 8.6 121 9-134 17-154 (247)
137 3p26_A Elongation factor 1 alp 99.8 2.5E-20 8.5E-25 142.8 7.4 123 11-137 31-189 (483)
138 1ega_A Protein (GTP-binding pr 99.8 1.9E-19 6.4E-24 130.4 10.8 134 12-154 7-155 (301)
139 3sjy_A Translation initiation 99.8 1.9E-19 6.5E-24 135.1 11.1 124 9-136 4-146 (403)
140 1lnz_A SPO0B-associated GTP-bi 99.8 6.1E-20 2.1E-24 134.8 8.1 119 15-135 160-290 (342)
141 3j2k_7 ERF3, eukaryotic polype 99.8 4.8E-19 1.6E-23 134.2 13.0 120 9-133 13-169 (439)
142 4dcu_A GTP-binding protein ENG 99.8 1.4E-19 4.9E-24 137.7 8.8 123 10-140 192-327 (456)
143 3t5d_A Septin-7; GTP-binding p 99.8 8.8E-19 3E-23 125.3 10.3 121 11-137 6-162 (274)
144 3cb4_D GTP-binding protein LEP 99.8 5.8E-19 2E-23 137.7 10.0 118 12-135 3-139 (599)
145 3izq_1 HBS1P, elongation facto 99.8 1.4E-19 4.7E-24 141.8 6.3 124 11-135 165-321 (611)
146 2h5e_A Peptide chain release f 99.8 4.3E-19 1.5E-23 137.0 8.1 122 9-136 9-151 (529)
147 2xtp_A GTPase IMAP family memb 99.8 6.3E-18 2.2E-22 119.8 13.2 120 10-134 19-154 (260)
148 2ywe_A GTP-binding protein LEP 99.8 1.6E-18 5.5E-23 135.1 10.9 119 11-135 4-141 (600)
149 2e87_A Hypothetical protein PH 99.8 7.6E-18 2.6E-22 124.6 13.5 122 11-137 165-298 (357)
150 3geh_A MNME, tRNA modification 99.8 7.4E-19 2.5E-23 133.7 8.3 116 12-137 223-348 (462)
151 1zun_B Sulfate adenylate trans 99.8 6E-18 2E-22 128.1 13.2 120 10-134 21-172 (434)
152 1xzp_A Probable tRNA modificat 99.8 6.8E-19 2.3E-23 134.4 8.0 112 13-134 243-365 (482)
153 1d2e_A Elongation factor TU (E 99.8 2.5E-18 8.4E-23 128.8 10.2 116 12-133 2-133 (397)
154 2c78_A Elongation factor TU-A; 99.8 1.1E-18 3.9E-23 130.9 8.4 118 10-133 8-142 (405)
155 1s0u_A EIF-2-gamma, translatio 99.8 2.6E-17 9E-22 123.6 15.1 122 11-136 6-152 (408)
156 3tr5_A RF-3, peptide chain rel 99.8 3.8E-19 1.3E-23 137.2 5.2 119 11-135 11-150 (528)
157 1mky_A Probable GTP-binding pr 99.8 8.1E-18 2.8E-22 127.5 11.7 118 11-136 178-309 (439)
158 1jny_A EF-1-alpha, elongation 99.8 3.5E-19 1.2E-23 134.9 4.1 120 12-133 5-158 (435)
159 2qag_A Septin-2, protein NEDD5 99.8 2.1E-18 7.2E-23 127.7 7.9 123 11-138 35-193 (361)
160 1r5b_A Eukaryotic peptide chai 99.7 1.3E-18 4.6E-23 132.6 6.8 122 10-133 40-195 (467)
161 1kk1_A EIF2gamma; initiation o 99.7 1.5E-17 5.2E-22 125.0 12.4 124 9-136 6-154 (410)
162 3izy_P Translation initiation 99.7 7.2E-20 2.5E-24 141.1 -0.4 117 12-135 3-120 (537)
163 1wb1_A Translation elongation 99.7 1.3E-17 4.4E-22 127.7 11.9 119 9-135 15-141 (482)
164 1f60_A Elongation factor EEF1A 99.7 5.8E-19 2E-23 134.4 4.2 117 12-133 6-159 (458)
165 2qtf_A Protein HFLX, GTP-bindi 99.7 2.3E-17 7.9E-22 122.2 11.9 116 15-135 181-308 (364)
166 3ohm_A Guanine nucleotide-bind 99.7 1.9E-17 6.6E-22 120.6 10.5 75 60-135 166-250 (327)
167 1dar_A EF-G, elongation factor 99.7 1.8E-17 6.2E-22 131.5 11.0 122 8-135 7-145 (691)
168 2elf_A Protein translation elo 99.7 6.7E-18 2.3E-22 125.3 7.6 105 15-136 23-129 (370)
169 1cip_A Protein (guanine nucleo 99.7 7.3E-18 2.5E-22 124.3 7.1 74 60-134 192-275 (353)
170 4fid_A G protein alpha subunit 99.7 4.2E-18 1.4E-22 124.6 5.7 76 59-135 159-244 (340)
171 2qpt_A EH domain-containing pr 99.7 1.6E-17 5.3E-22 128.9 9.2 121 10-137 62-236 (550)
172 2xtz_A Guanine nucleotide-bind 99.7 2.5E-17 8.5E-22 121.4 9.3 75 59-134 181-265 (354)
173 3mca_A HBS1, elongation factor 99.7 1.3E-18 4.3E-23 136.0 2.4 119 10-133 174-329 (592)
174 1wxq_A GTP-binding protein; st 99.7 4.6E-17 1.6E-21 121.8 10.4 84 14-97 1-114 (397)
175 2aka_B Dynamin-1; fusion prote 99.7 1.8E-17 6.3E-22 119.4 7.8 122 10-136 23-209 (299)
176 1jwy_B Dynamin A GTPase domain 99.7 1.2E-17 4E-22 121.3 6.8 121 11-136 22-215 (315)
177 2xex_A Elongation factor G; GT 99.7 4.4E-17 1.5E-21 129.4 9.7 118 10-135 7-143 (693)
178 1g7s_A Translation initiation 99.7 1.8E-17 6.2E-22 129.3 7.1 113 12-133 4-136 (594)
179 3avx_A Elongation factor TS, e 99.7 3.7E-17 1.3E-21 134.0 8.9 120 9-134 292-427 (1289)
180 1zo1_I IF2, translation initia 99.7 2.8E-18 9.6E-23 131.3 1.9 116 12-134 3-118 (501)
181 1n0u_A EF-2, elongation factor 99.7 7.1E-17 2.4E-21 130.5 9.7 117 10-132 16-163 (842)
182 2rdo_7 EF-G, elongation factor 99.7 2E-16 7E-21 125.7 12.2 120 10-135 7-150 (704)
183 2j69_A Bacterial dynamin-like 99.7 8.9E-17 3E-21 127.7 9.3 119 12-135 68-246 (695)
184 3t34_A Dynamin-related protein 99.7 3.2E-16 1.1E-20 116.0 8.3 121 12-136 33-220 (360)
185 3vqt_A RF-3, peptide chain rel 99.6 4.3E-16 1.5E-20 120.8 7.6 130 10-145 28-179 (548)
186 1pui_A ENGB, probable GTP-bind 99.6 1.1E-15 3.8E-20 104.6 8.4 116 10-134 23-152 (210)
187 1jal_A YCHF protein; nucleotid 99.6 4E-15 1.4E-19 109.8 11.3 83 14-96 3-108 (363)
188 2dy1_A Elongation factor G; tr 99.6 4.7E-15 1.6E-19 117.4 9.7 116 11-132 7-139 (665)
189 2qag_C Septin-7; cell cycle, c 99.6 1.8E-14 6.2E-19 108.2 11.4 123 11-138 29-186 (418)
190 1udx_A The GTP-binding protein 99.6 1.4E-14 4.8E-19 108.8 9.8 117 15-134 159-284 (416)
191 2x2e_A Dynamin-1; nitration, h 99.5 4.2E-15 1.5E-19 109.7 5.7 120 11-135 29-213 (353)
192 4fn5_A EF-G 1, elongation fact 99.5 4.6E-14 1.6E-18 112.5 11.6 129 11-145 11-164 (709)
193 1azs_C GS-alpha; complex (lyas 99.5 4.5E-14 1.5E-18 105.4 8.1 81 52-135 210-300 (402)
194 4a9a_A Ribosome-interacting GT 99.5 1.1E-13 3.9E-18 102.5 9.0 116 12-132 71-195 (376)
195 2dby_A GTP-binding protein; GD 99.5 2.1E-13 7.1E-18 101.0 9.2 83 14-96 2-111 (368)
196 2qnr_A Septin-2, protein NEDD5 99.5 5.9E-14 2E-18 101.5 5.3 121 11-137 16-173 (301)
197 1zcb_A G alpha I/13; GTP-bindi 99.5 1.8E-13 6.2E-18 101.2 8.0 80 52-134 194-283 (362)
198 3j25_A Tetracycline resistance 99.4 6.5E-15 2.2E-19 116.1 -1.5 117 13-135 2-135 (638)
199 3zvr_A Dynamin-1; hydrolase, D 99.4 1.7E-12 5.9E-17 103.4 11.2 120 11-136 49-234 (772)
200 1u0l_A Probable GTPase ENGC; p 99.4 1.4E-13 4.6E-18 99.6 4.0 99 28-137 32-133 (301)
201 2ohf_A Protein OLA1, GTP-bindi 99.4 2.1E-13 7.3E-18 101.5 3.9 88 12-99 21-131 (396)
202 3p32_A Probable GTPase RV1496/ 99.3 3.4E-13 1.1E-17 99.6 2.9 62 61-135 172-233 (355)
203 2wsm_A Hydrogenase expression/ 99.2 4.5E-12 1.5E-16 87.3 2.6 110 12-134 29-169 (221)
204 3ec1_A YQEH GTPase; atnos1, at 99.2 6.2E-12 2.1E-16 93.3 2.5 115 14-137 163-292 (369)
205 2p67_A LAO/AO transport system 99.2 1.4E-12 4.9E-17 95.8 -1.5 63 61-136 149-211 (341)
206 2www_A Methylmalonic aciduria 99.1 2.2E-11 7.5E-16 89.7 3.7 61 61-134 167-227 (349)
207 1yrb_A ATP(GTP)binding protein 99.1 1.8E-10 6.2E-15 81.2 8.2 73 61-135 109-187 (262)
208 2hf9_A Probable hydrogenase ni 99.1 1.7E-13 5.8E-18 94.8 -8.2 27 12-38 37-63 (226)
209 3h2y_A GTPase family protein; 99.1 5.2E-11 1.8E-15 88.3 3.5 115 14-137 161-291 (368)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.2E-10 1.1E-14 84.6 6.9 85 12-96 19-127 (392)
211 3sop_A Neuronal-specific septi 98.9 2.2E-09 7.7E-14 76.4 7.4 119 13-137 2-158 (270)
212 2yv5_A YJEQ protein; hydrolase 98.9 5E-09 1.7E-13 75.7 8.0 61 71-136 66-127 (302)
213 2qm8_A GTPase/ATPase; G protei 98.9 7.2E-10 2.4E-14 81.3 2.8 61 61-134 148-208 (337)
214 2qag_B Septin-6, protein NEDD5 98.9 1.5E-08 5E-13 76.2 9.6 119 12-137 41-194 (427)
215 1puj_A YLQF, conserved hypothe 98.9 2.4E-09 8.2E-14 76.7 4.9 59 11-72 118-176 (282)
216 3cnl_A YLQF, putative uncharac 98.8 1.6E-09 5.4E-14 76.8 2.6 57 14-73 100-156 (262)
217 2j37_W Signal recognition part 98.6 6.3E-08 2.1E-12 74.4 6.5 115 11-134 99-255 (504)
218 1f5n_A Interferon-induced guan 98.5 1.3E-07 4.5E-12 73.8 4.5 64 10-73 35-103 (592)
219 3l82_B F-box only protein 4; T 98.4 1.2E-07 4.1E-12 64.8 2.9 64 70-134 111-178 (227)
220 3szr_A Interferon-induced GTP- 98.3 5.6E-07 1.9E-11 70.8 5.4 24 14-37 46-69 (608)
221 1tq4_A IIGP1, interferon-induc 98.3 2E-06 6.7E-11 64.6 7.3 111 13-132 69-188 (413)
222 3dm5_A SRP54, signal recogniti 98.1 1.4E-05 4.6E-10 60.5 8.6 116 12-135 99-255 (443)
223 3l2o_B F-box only protein 4; s 98.1 9.9E-07 3.4E-11 63.0 1.4 66 68-134 194-263 (312)
224 1bif_A 6-phosphofructo-2-kinas 98.1 1.2E-07 4.2E-12 72.3 -3.5 102 11-114 37-148 (469)
225 2v3c_C SRP54, signal recogniti 98.0 9.1E-06 3.1E-10 61.4 6.4 66 60-134 180-253 (432)
226 3q5d_A Atlastin-1; G protein, 98.0 6.1E-06 2.1E-10 62.5 5.1 27 10-36 64-90 (447)
227 3h2y_A GTPase family protein; 97.9 3.6E-06 1.2E-10 62.3 2.4 58 70-135 55-112 (368)
228 1puj_A YLQF, conserved hypothe 97.9 8.6E-06 3E-10 58.2 3.5 64 65-136 3-67 (282)
229 3ec1_A YQEH GTPase; atnos1, at 97.8 5.5E-06 1.9E-10 61.4 1.2 57 70-134 57-113 (369)
230 3kl4_A SRP54, signal recogniti 97.8 1.4E-05 4.8E-10 60.3 3.2 66 61-134 180-253 (433)
231 1ye8_A Protein THEP1, hypothet 97.7 3E-05 1E-09 51.7 3.2 22 15-36 2-23 (178)
232 1j8m_F SRP54, signal recogniti 97.6 5.5E-05 1.9E-09 54.4 4.7 66 60-134 180-254 (297)
233 1t9h_A YLOQ, probable GTPase E 97.6 0.00015 5.2E-09 52.3 6.7 57 76-136 78-134 (307)
234 1kgd_A CASK, peripheral plasma 97.6 3.2E-05 1.1E-09 51.4 3.0 22 15-36 7-28 (180)
235 1lvg_A Guanylate kinase, GMP k 97.6 3.9E-05 1.3E-09 51.8 3.0 21 15-35 6-26 (198)
236 3a00_A Guanylate kinase, GMP k 97.5 6.3E-05 2.1E-09 50.2 2.9 21 16-36 4-24 (186)
237 3tr0_A Guanylate kinase, GMP k 97.5 6.8E-05 2.3E-09 50.4 3.0 22 15-36 9-30 (205)
238 1t9h_A YLOQ, probable GTPase E 97.5 4.7E-05 1.6E-09 55.0 2.2 23 15-37 175-197 (307)
239 1zp6_A Hypothetical protein AT 97.5 7.3E-05 2.5E-09 49.7 3.0 23 14-36 10-32 (191)
240 1znw_A Guanylate kinase, GMP k 97.5 6.9E-05 2.4E-09 50.8 2.9 22 15-36 22-43 (207)
241 1z6g_A Guanylate kinase; struc 97.4 7.8E-05 2.7E-09 51.1 2.9 22 15-36 25-46 (218)
242 2yv5_A YJEQ protein; hydrolase 97.4 0.00033 1.1E-08 50.4 6.3 22 15-37 167-188 (302)
243 3ney_A 55 kDa erythrocyte memb 97.4 8.5E-05 2.9E-09 50.3 3.0 23 14-36 20-42 (197)
244 1s96_A Guanylate kinase, GMP k 97.4 8.3E-05 2.8E-09 51.1 3.0 22 15-36 18-39 (219)
245 4gp7_A Metallophosphoesterase; 97.4 7.6E-05 2.6E-09 49.2 2.7 20 15-34 11-30 (171)
246 2xxa_A Signal recognition part 97.4 0.0002 6.9E-09 54.1 5.2 23 12-34 99-121 (433)
247 3c8u_A Fructokinase; YP_612366 97.4 0.00012 4E-09 49.7 3.3 24 12-35 21-44 (208)
248 3tau_A Guanylate kinase, GMP k 97.4 0.00011 3.7E-09 50.0 3.1 23 15-37 10-32 (208)
249 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.3E-09 49.0 3.1 21 16-36 4-24 (186)
250 3tif_A Uncharacterized ABC tra 97.3 0.00013 4.4E-09 50.7 3.0 23 15-37 33-55 (235)
251 2qor_A Guanylate kinase; phosp 97.3 0.00016 5.3E-09 48.9 3.0 23 14-36 13-35 (204)
252 2cdn_A Adenylate kinase; phosp 97.3 0.00016 5.5E-09 48.6 3.0 29 7-35 14-42 (201)
253 1cke_A CK, MSSA, protein (cyti 97.3 0.00018 6.2E-09 49.1 3.2 22 14-35 6-27 (227)
254 1ukz_A Uridylate kinase; trans 97.3 0.00023 8E-09 47.8 3.7 26 10-35 12-37 (203)
255 2pcj_A ABC transporter, lipopr 97.2 0.00017 5.7E-09 49.7 2.9 23 15-37 32-54 (224)
256 2j41_A Guanylate kinase; GMP, 97.2 0.00017 5.7E-09 48.5 2.9 24 14-37 7-30 (207)
257 2bdt_A BH3686; alpha-beta prot 97.2 0.00017 5.9E-09 48.0 2.9 21 15-35 4-24 (189)
258 3asz_A Uridine kinase; cytidin 97.2 0.0002 6.7E-09 48.5 3.3 22 14-35 7-28 (211)
259 1htw_A HI0065; nucleotide-bind 97.2 0.00018 6.2E-09 46.9 2.9 23 15-37 35-57 (158)
260 2rcn_A Probable GTPase ENGC; Y 97.2 0.00017 5.9E-09 53.1 3.1 24 15-38 217-240 (358)
261 1kag_A SKI, shikimate kinase I 97.2 0.00018 6.3E-09 47.0 3.0 22 15-36 6-27 (173)
262 3lw7_A Adenylate kinase relate 97.2 0.00019 6.3E-09 46.7 2.9 20 14-33 2-21 (179)
263 4ido_A Atlastin-1; GTPase, GTP 97.2 0.0006 2.1E-08 51.7 5.9 64 10-73 64-152 (457)
264 3kb2_A SPBC2 prophage-derived 97.2 0.00022 7.5E-09 46.4 3.1 21 15-35 3-23 (173)
265 2onk_A Molybdate/tungstate ABC 97.2 0.00021 7.1E-09 49.8 3.1 23 15-37 26-48 (240)
266 4eun_A Thermoresistant glucoki 97.2 0.00021 7.2E-09 48.1 3.0 22 14-35 30-51 (200)
267 3gfo_A Cobalt import ATP-bindi 97.2 0.00021 7.1E-09 50.9 3.0 23 15-37 36-58 (275)
268 1b0u_A Histidine permease; ABC 97.2 0.00021 7.2E-09 50.4 3.0 23 15-37 34-56 (262)
269 2bbw_A Adenylate kinase 4, AK4 97.2 0.00024 8.3E-09 49.3 3.3 21 14-34 28-48 (246)
270 1ly1_A Polynucleotide kinase; 97.2 0.00023 7.8E-09 46.7 3.0 22 14-35 3-24 (181)
271 2cbz_A Multidrug resistance-as 97.2 0.00024 8.3E-09 49.3 3.2 23 15-37 33-55 (237)
272 1sgw_A Putative ABC transporte 97.2 0.00023 8E-09 48.7 3.0 23 15-37 37-59 (214)
273 2eyu_A Twitching motility prot 97.2 0.00021 7.3E-09 50.4 2.9 22 14-35 26-47 (261)
274 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.3E-09 48.5 2.8 21 15-35 2-22 (216)
275 4g1u_C Hemin import ATP-bindin 97.2 0.00022 7.6E-09 50.4 3.0 23 15-37 39-61 (266)
276 1mv5_A LMRA, multidrug resista 97.2 0.00026 9E-09 49.3 3.3 22 15-36 30-51 (243)
277 2v9p_A Replication protein E1; 97.2 0.00024 8.3E-09 51.2 3.1 21 15-35 128-148 (305)
278 2ff7_A Alpha-hemolysin translo 97.2 0.00026 9E-09 49.5 3.2 23 15-37 37-59 (247)
279 1g6h_A High-affinity branched- 97.2 0.00024 8.1E-09 50.0 3.0 23 15-37 35-57 (257)
280 3dl0_A Adenylate kinase; phosp 97.1 0.00024 8.2E-09 48.3 2.8 21 15-35 2-22 (216)
281 2pze_A Cystic fibrosis transme 97.1 0.00029 1E-08 48.7 3.3 23 15-37 36-58 (229)
282 2olj_A Amino acid ABC transpor 97.1 0.00026 8.8E-09 50.0 3.0 23 15-37 52-74 (263)
283 1knq_A Gluconate kinase; ALFA/ 97.1 0.00034 1.2E-08 45.9 3.4 22 14-35 9-30 (175)
284 1ji0_A ABC transporter; ATP bi 97.1 0.00026 9.1E-09 49.2 3.0 23 15-37 34-56 (240)
285 2i3b_A HCR-ntpase, human cance 97.1 0.00024 8.2E-09 47.7 2.6 22 15-36 3-24 (189)
286 2d2e_A SUFC protein; ABC-ATPas 97.1 0.00028 9.7E-09 49.4 3.0 22 15-36 31-52 (250)
287 3vaa_A Shikimate kinase, SK; s 97.1 0.00032 1.1E-08 47.2 3.2 22 14-35 26-47 (199)
288 2qi9_C Vitamin B12 import ATP- 97.1 0.00029 9.9E-09 49.4 3.0 23 15-37 28-50 (249)
289 1qhx_A CPT, protein (chloramph 97.1 0.0003 1E-08 46.2 3.0 21 15-35 5-25 (178)
290 1vpl_A ABC transporter, ATP-bi 97.1 0.00029 9.9E-09 49.6 3.0 23 15-37 43-65 (256)
291 1u0l_A Probable GTPase ENGC; p 97.1 0.00026 9E-09 50.9 2.9 24 15-38 171-194 (301)
292 3b85_A Phosphate starvation-in 97.1 0.00023 8E-09 48.5 2.4 22 15-36 24-45 (208)
293 2ghi_A Transport protein; mult 97.1 0.00032 1.1E-08 49.4 3.2 22 15-36 48-69 (260)
294 2zu0_C Probable ATP-dependent 97.1 0.0003 1E-08 49.7 3.1 22 15-36 48-69 (267)
295 3uie_A Adenylyl-sulfate kinase 97.1 0.0003 1E-08 47.3 2.9 23 13-35 25-47 (200)
296 1nks_A Adenylate kinase; therm 97.1 0.00037 1.3E-08 46.1 3.4 21 15-35 3-23 (194)
297 1np6_A Molybdopterin-guanine d 97.1 0.00032 1.1E-08 46.5 3.0 23 14-36 7-29 (174)
298 3sr0_A Adenylate kinase; phosp 97.1 0.00029 9.9E-09 48.0 2.8 22 14-35 1-22 (206)
299 2ixe_A Antigen peptide transpo 97.1 0.0003 1E-08 49.8 3.0 23 15-37 47-69 (271)
300 3t61_A Gluconokinase; PSI-biol 97.1 0.00031 1.1E-08 47.2 2.9 22 14-35 19-40 (202)
301 2yvu_A Probable adenylyl-sulfa 97.1 0.00048 1.7E-08 45.6 3.8 25 11-35 11-35 (186)
302 2ihy_A ABC transporter, ATP-bi 97.1 0.00036 1.2E-08 49.7 3.3 23 15-37 49-71 (279)
303 3cm0_A Adenylate kinase; ATP-b 97.1 0.00045 1.6E-08 45.6 3.6 22 14-35 5-26 (186)
304 3ec2_A DNA replication protein 97.1 0.0003 1E-08 46.4 2.7 23 14-36 39-61 (180)
305 2jaq_A Deoxyguanosine kinase; 97.1 0.00038 1.3E-08 46.6 3.2 21 15-35 2-22 (205)
306 4a74_A DNA repair and recombin 97.1 0.00032 1.1E-08 47.8 2.9 21 15-35 27-47 (231)
307 2nq2_C Hypothetical ABC transp 97.0 0.00034 1.2E-08 49.1 3.0 23 15-37 33-55 (253)
308 3lnc_A Guanylate kinase, GMP k 97.0 0.0002 6.8E-09 49.3 1.7 22 15-36 29-51 (231)
309 2ehv_A Hypothetical protein PH 97.0 0.00036 1.2E-08 48.2 3.1 20 15-34 32-51 (251)
310 1lw7_A Transcriptional regulat 97.0 0.00028 9.7E-09 52.0 2.6 24 13-36 170-193 (365)
311 2if2_A Dephospho-COA kinase; a 97.0 0.0004 1.4E-08 46.7 3.2 21 15-35 3-23 (204)
312 2rhm_A Putative kinase; P-loop 97.0 0.00044 1.5E-08 45.9 3.4 22 14-35 6-27 (193)
313 2yz2_A Putative ABC transporte 97.0 0.00036 1.2E-08 49.3 3.0 23 15-37 35-57 (266)
314 3aez_A Pantothenate kinase; tr 97.0 0.00036 1.2E-08 50.5 3.0 25 11-35 88-112 (312)
315 3trf_A Shikimate kinase, SK; a 97.0 0.00043 1.5E-08 45.7 3.2 22 14-35 6-27 (185)
316 2f1r_A Molybdopterin-guanine d 97.0 0.00018 6.1E-09 47.6 1.2 22 15-36 4-25 (171)
317 2qt1_A Nicotinamide riboside k 97.0 0.00059 2E-08 46.0 3.8 25 12-36 20-44 (207)
318 3tlx_A Adenylate kinase 2; str 97.0 0.00049 1.7E-08 47.8 3.5 24 12-35 28-51 (243)
319 1e4v_A Adenylate kinase; trans 97.0 0.00037 1.3E-08 47.3 2.8 21 15-35 2-22 (214)
320 2pjz_A Hypothetical protein ST 97.0 0.00046 1.6E-08 48.7 3.3 23 15-37 32-54 (263)
321 1jjv_A Dephospho-COA kinase; P 97.0 0.00053 1.8E-08 46.2 3.5 22 14-35 3-24 (206)
322 1kht_A Adenylate kinase; phosp 97.0 0.00047 1.6E-08 45.6 3.2 22 14-35 4-25 (192)
323 1uj2_A Uridine-cytidine kinase 97.0 0.00049 1.7E-08 48.0 3.3 27 9-35 18-44 (252)
324 3cnl_A YLQF, putative uncharac 97.0 0.00022 7.4E-09 50.4 1.4 59 68-136 4-63 (262)
325 3nh6_A ATP-binding cassette SU 97.0 0.00028 9.7E-09 50.9 2.0 22 15-36 82-103 (306)
326 3fvq_A Fe(3+) IONS import ATP- 97.0 0.00044 1.5E-08 51.0 3.0 23 15-37 32-54 (359)
327 3jvv_A Twitching mobility prot 97.0 0.00044 1.5E-08 51.0 2.9 21 15-35 125-145 (356)
328 2plr_A DTMP kinase, probable t 96.9 0.00059 2E-08 45.9 3.3 22 14-35 5-26 (213)
329 1aky_A Adenylate kinase; ATP:A 96.9 0.00046 1.6E-08 47.0 2.8 22 14-35 5-26 (220)
330 1tev_A UMP-CMP kinase; ploop, 96.9 0.00062 2.1E-08 45.1 3.4 22 14-35 4-25 (196)
331 2bbs_A Cystic fibrosis transme 96.9 0.00055 1.9E-08 49.0 3.2 23 15-37 66-88 (290)
332 2wwf_A Thymidilate kinase, put 96.9 0.00061 2.1E-08 45.9 3.2 22 14-35 11-32 (212)
333 1y63_A LMAJ004144AAA protein; 96.9 0.00053 1.8E-08 45.5 2.8 23 14-36 11-33 (184)
334 1via_A Shikimate kinase; struc 96.9 0.00049 1.7E-08 45.2 2.6 21 15-35 6-26 (175)
335 1z47_A CYSA, putative ABC-tran 96.9 0.00055 1.9E-08 50.4 3.0 23 15-37 43-65 (355)
336 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00055 1.9E-08 49.9 3.0 23 15-37 173-195 (330)
337 1zd8_A GTP:AMP phosphotransfer 96.9 0.00052 1.8E-08 47.0 2.7 21 14-34 8-28 (227)
338 2pt5_A Shikimate kinase, SK; a 96.9 0.00058 2E-08 44.3 2.8 21 15-35 2-22 (168)
339 1gvn_B Zeta; postsegregational 96.9 0.00072 2.5E-08 48.3 3.6 24 12-35 32-55 (287)
340 2gza_A Type IV secretion syste 96.9 0.00053 1.8E-08 50.6 2.9 22 15-36 177-198 (361)
341 1odf_A YGR205W, hypothetical 3 96.9 0.00081 2.8E-08 48.1 3.8 24 11-34 29-52 (290)
342 3rlf_A Maltose/maltodextrin im 96.9 0.00059 2E-08 50.7 3.1 23 15-37 31-53 (381)
343 3tui_C Methionine import ATP-b 96.9 0.0006 2E-08 50.4 3.1 23 15-37 56-78 (366)
344 2it1_A 362AA long hypothetical 96.9 0.0006 2.1E-08 50.3 3.1 23 15-37 31-53 (362)
345 2yyz_A Sugar ABC transporter, 96.9 0.00059 2E-08 50.3 3.0 23 15-37 31-53 (359)
346 1ak2_A Adenylate kinase isoenz 96.9 0.00061 2.1E-08 46.9 2.9 24 12-35 15-38 (233)
347 3be4_A Adenylate kinase; malar 96.9 0.00059 2E-08 46.5 2.7 22 14-35 6-27 (217)
348 2jeo_A Uridine-cytidine kinase 96.9 0.00074 2.5E-08 46.9 3.3 23 13-35 25-47 (245)
349 2kjq_A DNAA-related protein; s 96.9 0.00047 1.6E-08 44.4 2.1 23 15-37 38-60 (149)
350 2x8a_A Nuclear valosin-contain 96.8 0.00062 2.1E-08 48.3 2.9 21 16-36 47-67 (274)
351 3tqc_A Pantothenate kinase; bi 96.8 0.001 3.4E-08 48.4 4.0 25 10-34 89-113 (321)
352 1g29_1 MALK, maltose transport 96.8 0.00065 2.2E-08 50.3 3.0 23 15-37 31-53 (372)
353 1v43_A Sugar-binding transport 96.8 0.00067 2.3E-08 50.2 3.1 23 15-37 39-61 (372)
354 2ewv_A Twitching motility prot 96.8 0.00069 2.4E-08 50.2 3.1 22 14-35 137-158 (372)
355 2xb4_A Adenylate kinase; ATP-b 96.8 0.00066 2.3E-08 46.5 2.8 21 15-35 2-22 (223)
356 3iij_A Coilin-interacting nucl 96.8 0.00074 2.5E-08 44.5 2.9 22 14-35 12-33 (180)
357 1ixz_A ATP-dependent metallopr 96.8 0.00073 2.5E-08 47.0 3.0 21 16-36 52-72 (254)
358 2ze6_A Isopentenyl transferase 96.8 0.00074 2.5E-08 47.3 3.0 21 15-35 3-23 (253)
359 1jbk_A CLPB protein; beta barr 96.8 0.00087 3E-08 43.9 3.2 23 14-36 44-66 (195)
360 1uf9_A TT1252 protein; P-loop, 96.8 0.00094 3.2E-08 44.6 3.4 24 13-36 8-31 (203)
361 2v54_A DTMP kinase, thymidylat 96.8 0.00088 3E-08 44.8 3.2 23 14-36 5-27 (204)
362 1sq5_A Pantothenate kinase; P- 96.8 0.00098 3.4E-08 48.0 3.6 24 12-35 79-102 (308)
363 2p5t_B PEZT; postsegregational 96.8 0.00074 2.5E-08 47.2 2.9 25 11-35 30-54 (253)
364 1rj9_A FTSY, signal recognitio 96.8 0.00075 2.6E-08 48.6 2.9 22 14-35 103-124 (304)
365 2oap_1 GSPE-2, type II secreti 96.8 0.00076 2.6E-08 52.0 3.1 23 15-37 262-284 (511)
366 1xjc_A MOBB protein homolog; s 96.8 0.00087 3E-08 44.2 3.0 22 14-35 5-26 (169)
367 1zak_A Adenylate kinase; ATP:A 96.8 0.00079 2.7E-08 45.9 2.9 22 14-35 6-27 (222)
368 1p9r_A General secretion pathw 96.8 0.00074 2.5E-08 50.8 2.9 22 15-36 169-190 (418)
369 2vp4_A Deoxynucleoside kinase; 96.8 0.0011 3.6E-08 45.7 3.5 26 11-36 18-43 (230)
370 2z0h_A DTMP kinase, thymidylat 96.8 0.00085 2.9E-08 44.6 2.9 21 15-35 2-22 (197)
371 1gtv_A TMK, thymidylate kinase 96.8 0.0003 1E-08 47.6 0.6 21 15-35 2-22 (214)
372 2c95_A Adenylate kinase 1; tra 96.8 0.00096 3.3E-08 44.3 3.2 22 14-35 10-31 (196)
373 1zcb_A G alpha I/13; GTP-bindi 96.8 0.00096 3.3E-08 49.3 3.4 23 11-33 31-53 (362)
374 1qf9_A UMP/CMP kinase, protein 96.8 0.0012 4E-08 43.7 3.6 22 14-35 7-28 (194)
375 1rz3_A Hypothetical protein rb 96.7 0.0011 3.8E-08 44.6 3.4 24 12-35 21-44 (201)
376 4e22_A Cytidylate kinase; P-lo 96.7 0.00096 3.3E-08 46.6 3.2 21 14-34 28-48 (252)
377 3gd7_A Fusion complex of cysti 96.7 0.00082 2.8E-08 50.1 3.0 22 15-36 49-70 (390)
378 2bwj_A Adenylate kinase 5; pho 96.7 0.0011 3.6E-08 44.2 3.2 22 14-35 13-34 (199)
379 3d31_A Sulfate/molybdate ABC t 96.7 0.00056 1.9E-08 50.2 1.9 23 15-37 28-50 (348)
380 3umf_A Adenylate kinase; rossm 96.7 0.00096 3.3E-08 45.8 2.9 20 16-35 32-51 (217)
381 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.00095 3.3E-08 45.4 2.9 21 15-35 25-45 (235)
382 2pbr_A DTMP kinase, thymidylat 96.7 0.00093 3.2E-08 44.3 2.8 21 15-35 2-22 (195)
383 1nn5_A Similar to deoxythymidy 96.7 0.00091 3.1E-08 45.1 2.8 22 14-35 10-31 (215)
384 1e6c_A Shikimate kinase; phosp 96.7 0.0011 3.6E-08 43.2 3.0 21 15-35 4-24 (173)
385 1vht_A Dephospho-COA kinase; s 96.7 0.0013 4.3E-08 44.7 3.4 22 14-35 5-26 (218)
386 3b9q_A Chloroplast SRP recepto 96.7 0.00099 3.4E-08 48.0 3.0 23 13-35 100-122 (302)
387 3r20_A Cytidylate kinase; stru 96.7 0.0011 3.7E-08 46.0 3.0 22 13-34 9-30 (233)
388 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0013 4.6E-08 46.1 3.5 22 14-35 5-26 (260)
389 3e70_C DPA, signal recognition 96.7 0.0011 3.7E-08 48.4 3.0 24 12-35 128-151 (328)
390 2iyv_A Shikimate kinase, SK; t 96.6 0.0011 3.9E-08 43.6 2.9 21 15-35 4-24 (184)
391 1iy2_A ATP-dependent metallopr 96.6 0.0011 3.8E-08 46.8 3.0 21 16-36 76-96 (278)
392 1in4_A RUVB, holliday junction 96.6 0.0011 3.7E-08 48.3 2.9 22 15-36 53-74 (334)
393 3kta_A Chromosome segregation 96.6 0.0013 4.6E-08 43.2 3.0 21 15-35 28-48 (182)
394 2pez_A Bifunctional 3'-phospho 96.6 0.0016 5.4E-08 42.8 3.3 22 14-35 6-27 (179)
395 3co5_A Putative two-component 96.6 0.0035 1.2E-07 39.8 4.8 23 14-36 28-50 (143)
396 1zuh_A Shikimate kinase; alpha 96.6 0.0015 5.2E-08 42.4 3.2 22 14-35 8-29 (168)
397 1oxx_K GLCV, glucose, ABC tran 96.6 0.00055 1.9E-08 50.4 1.1 23 15-37 33-55 (353)
398 2vli_A Antibiotic resistance p 96.6 0.00085 2.9E-08 44.1 1.9 22 14-35 6-27 (183)
399 1cr0_A DNA primase/helicase; R 96.6 0.0013 4.4E-08 46.9 2.9 21 15-35 37-57 (296)
400 1p5z_B DCK, deoxycytidine kina 96.6 0.00099 3.4E-08 46.7 2.2 27 10-36 21-47 (263)
401 2p65_A Hypothetical protein PF 96.5 0.0011 3.9E-08 43.3 2.4 23 14-36 44-66 (187)
402 1nij_A Hypothetical protein YJ 96.5 0.0016 5.3E-08 47.2 3.2 25 13-37 4-28 (318)
403 3bos_A Putative DNA replicatio 96.5 0.0017 5.8E-08 44.3 3.2 23 14-36 53-75 (242)
404 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0095 3.2E-07 43.9 7.3 19 16-34 26-44 (365)
405 2cvh_A DNA repair and recombin 96.5 0.0016 5.4E-08 44.0 2.9 21 15-35 22-42 (220)
406 1n0w_A DNA repair protein RAD5 96.5 0.0016 5.5E-08 44.7 3.0 22 15-36 26-47 (243)
407 2npi_A Protein CLP1; CLP1-PCF1 96.5 0.0014 4.8E-08 49.9 2.9 23 14-36 139-161 (460)
408 1lv7_A FTSH; alpha/beta domain 96.5 0.0016 5.4E-08 45.4 3.0 22 15-36 47-68 (257)
409 4eaq_A DTMP kinase, thymidylat 96.5 0.0016 5.6E-08 44.8 3.0 24 12-35 25-48 (229)
410 2f6r_A COA synthase, bifunctio 96.5 0.0022 7.4E-08 45.6 3.6 23 12-34 74-96 (281)
411 3nwj_A ATSK2; P loop, shikimat 96.5 0.0014 4.8E-08 45.9 2.6 22 14-35 49-70 (250)
412 2obl_A ESCN; ATPase, hydrolase 96.5 0.0018 6.1E-08 47.5 3.2 23 15-37 73-95 (347)
413 1m7g_A Adenylylsulfate kinase; 96.5 0.0018 6E-08 43.9 2.9 23 13-35 25-47 (211)
414 2og2_A Putative signal recogni 96.4 0.0017 5.9E-08 47.8 3.0 23 13-35 157-179 (359)
415 3b60_A Lipid A export ATP-bind 96.4 0.0018 6.3E-08 50.6 3.2 22 15-36 371-392 (582)
416 2w58_A DNAI, primosome compone 96.4 0.0022 7.5E-08 42.9 3.2 23 14-36 55-77 (202)
417 2yhs_A FTSY, cell division pro 96.4 0.0018 6.2E-08 49.7 3.0 23 13-35 293-315 (503)
418 1ltq_A Polynucleotide kinase; 96.4 0.0019 6.6E-08 46.0 3.0 22 14-35 3-24 (301)
419 3n70_A Transport activator; si 96.4 0.0043 1.5E-07 39.4 4.3 25 14-38 25-49 (145)
420 3b5x_A Lipid A export ATP-bind 96.3 0.0021 7.3E-08 50.3 3.1 22 15-36 371-392 (582)
421 3euj_A Chromosome partition pr 96.3 0.0021 7.1E-08 49.2 3.0 21 15-35 31-51 (483)
422 1yqt_A RNAse L inhibitor; ATP- 96.3 0.0024 8.2E-08 49.6 3.3 23 15-37 49-71 (538)
423 1svm_A Large T antigen; AAA+ f 96.3 0.0022 7.5E-08 47.6 2.9 22 14-35 170-191 (377)
424 2dpy_A FLII, flagellum-specifi 96.3 0.0024 8.2E-08 48.3 3.2 23 15-37 159-181 (438)
425 2grj_A Dephospho-COA kinase; T 96.3 0.0031 1.1E-07 42.3 3.4 26 11-36 10-35 (192)
426 1njg_A DNA polymerase III subu 96.3 0.0024 8.3E-08 43.3 2.9 21 15-35 47-67 (250)
427 1tue_A Replication protein E1; 96.3 0.002 6.9E-08 43.8 2.4 21 15-35 60-80 (212)
428 1f2t_A RAD50 ABC-ATPase; DNA d 96.3 0.0029 1E-07 40.6 3.1 19 16-34 26-44 (149)
429 3qf4_B Uncharacterized ABC tra 96.3 0.0021 7.1E-08 50.5 2.7 22 15-36 383-404 (598)
430 2yl4_A ATP-binding cassette SU 96.3 0.002 6.7E-08 50.6 2.6 22 15-36 372-393 (595)
431 2chg_A Replication factor C sm 96.3 0.0027 9.3E-08 42.5 2.9 22 15-36 40-61 (226)
432 1nlf_A Regulatory protein REPA 96.2 0.0026 8.9E-08 45.0 2.9 21 15-35 32-52 (279)
433 4a82_A Cystic fibrosis transme 96.2 0.0018 6.1E-08 50.7 2.2 22 15-36 369-390 (578)
434 3b9p_A CG5977-PA, isoform A; A 96.2 0.0026 9E-08 45.1 2.9 23 14-36 55-77 (297)
435 3ozx_A RNAse L inhibitor; ATP 96.2 0.0026 9E-08 49.4 3.0 23 15-37 27-49 (538)
436 2rcn_A Probable GTPase ENGC; Y 96.2 0.012 4E-07 43.4 6.3 50 82-136 128-177 (358)
437 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0031 1.1E-07 43.8 3.0 22 14-35 40-61 (262)
438 3h4m_A Proteasome-activating n 96.2 0.0033 1.1E-07 44.3 3.1 23 14-36 52-74 (285)
439 3j16_B RLI1P; ribosome recycli 96.2 0.003 1E-07 49.8 3.1 23 15-37 105-127 (608)
440 3qf4_A ABC transporter, ATP-bi 96.1 0.0024 8.1E-08 50.1 2.4 22 15-36 371-392 (587)
441 3cf0_A Transitional endoplasmi 96.1 0.0031 1.1E-07 45.1 2.9 22 15-36 51-72 (301)
442 3syl_A Protein CBBX; photosynt 96.1 0.0036 1.2E-07 44.6 3.2 24 12-35 66-89 (309)
443 3zvl_A Bifunctional polynucleo 96.1 0.0033 1.1E-07 47.2 3.1 24 13-36 258-281 (416)
444 2qmh_A HPR kinase/phosphorylas 96.1 0.0038 1.3E-07 42.3 3.0 24 14-37 35-58 (205)
445 2qby_A CDC6 homolog 1, cell di 96.1 0.0034 1.2E-07 45.8 2.9 23 14-36 46-68 (386)
446 2dr3_A UPF0273 protein PH0284; 96.1 0.0037 1.3E-07 42.9 3.0 21 15-35 25-45 (247)
447 1l8q_A Chromosomal replication 96.1 0.0034 1.2E-07 45.2 2.9 22 15-36 39-60 (324)
448 3bk7_A ABC transporter ATP-bin 96.1 0.0038 1.3E-07 49.2 3.3 23 15-37 119-141 (607)
449 3t15_A Ribulose bisphosphate c 96.1 0.0036 1.2E-07 44.7 2.9 23 14-36 37-59 (293)
450 3ozx_A RNAse L inhibitor; ATP 96.1 0.0036 1.2E-07 48.6 3.0 24 15-38 296-319 (538)
451 1d2n_A N-ethylmaleimide-sensit 96.0 0.0058 2E-07 42.9 3.9 26 11-36 62-87 (272)
452 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0042 1.4E-07 48.2 3.3 23 15-37 314-336 (538)
453 3ake_A Cytidylate kinase; CMP 96.0 0.0046 1.6E-07 41.3 3.2 21 15-35 4-24 (208)
454 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0054 1.8E-07 45.1 3.6 23 12-34 23-45 (359)
455 4fcw_A Chaperone protein CLPB; 96.0 0.0057 2E-07 43.5 3.7 23 14-36 48-70 (311)
456 3gmt_A Adenylate kinase; ssgci 96.0 0.0043 1.5E-07 42.9 2.8 24 12-35 7-30 (230)
457 1fnn_A CDC6P, cell division co 96.0 0.0047 1.6E-07 45.2 3.2 23 15-37 46-68 (389)
458 1q3t_A Cytidylate kinase; nucl 96.0 0.0043 1.5E-07 42.7 2.8 24 12-35 15-38 (236)
459 1sxj_E Activator 1 40 kDa subu 96.0 0.0034 1.2E-07 45.6 2.4 21 15-35 38-58 (354)
460 1c9k_A COBU, adenosylcobinamid 96.0 0.0053 1.8E-07 40.8 3.1 21 16-36 2-22 (180)
461 3bk7_A ABC transporter ATP-bin 96.0 0.0047 1.6E-07 48.6 3.3 23 15-37 384-406 (607)
462 2px0_A Flagellar biosynthesis 95.9 0.0044 1.5E-07 44.4 2.9 21 14-34 106-126 (296)
463 3crm_A TRNA delta(2)-isopenten 95.9 0.0046 1.6E-07 44.9 2.9 22 14-35 6-27 (323)
464 1pzn_A RAD51, DNA repair and r 95.9 0.0044 1.5E-07 45.4 2.9 22 15-36 133-154 (349)
465 3a8t_A Adenylate isopentenyltr 95.9 0.0052 1.8E-07 44.9 3.2 22 15-36 42-63 (339)
466 1ofh_A ATP-dependent HSL prote 95.9 0.0051 1.7E-07 43.7 3.0 22 14-35 51-72 (310)
467 1sxj_C Activator 1 40 kDa subu 95.9 0.0048 1.6E-07 44.8 2.9 22 15-36 48-69 (340)
468 3d3q_A TRNA delta(2)-isopenten 95.9 0.005 1.7E-07 45.0 2.9 22 14-35 8-29 (340)
469 3exa_A TRNA delta(2)-isopenten 95.9 0.0055 1.9E-07 44.4 3.1 22 15-36 5-26 (322)
470 3ld9_A DTMP kinase, thymidylat 95.8 0.0069 2.3E-07 41.7 3.4 25 11-35 19-43 (223)
471 3j16_B RLI1P; ribosome recycli 95.8 0.0051 1.8E-07 48.4 3.1 23 16-38 381-403 (608)
472 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.0053 1.8E-07 44.4 2.9 23 14-36 46-68 (322)
473 1vma_A Cell division protein F 95.8 0.0057 2E-07 44.1 3.0 23 13-35 104-126 (306)
474 2ocp_A DGK, deoxyguanosine kin 95.8 0.0069 2.3E-07 41.8 3.3 23 14-36 3-25 (241)
475 4f4c_A Multidrug resistance pr 95.8 0.0034 1.2E-07 53.6 2.0 21 15-35 1107-1127(1321)
476 4b4t_M 26S protease regulatory 95.7 0.0059 2E-07 46.1 3.0 23 14-36 216-238 (434)
477 2v1u_A Cell division control p 95.7 0.0052 1.8E-07 44.9 2.6 23 14-36 45-67 (387)
478 4b4t_K 26S protease regulatory 95.7 0.0059 2E-07 46.0 2.9 21 15-35 208-228 (428)
479 1azs_C GS-alpha; complex (lyas 95.7 0.0081 2.8E-07 44.9 3.6 24 10-33 37-60 (402)
480 3foz_A TRNA delta(2)-isopenten 95.7 0.0066 2.3E-07 43.9 2.9 22 14-35 11-32 (316)
481 2qen_A Walker-type ATPase; unk 95.7 0.0066 2.2E-07 43.7 3.0 22 15-36 33-54 (350)
482 3eie_A Vacuolar protein sortin 95.7 0.007 2.4E-07 43.7 3.1 23 14-36 52-74 (322)
483 1sxj_D Activator 1 41 kDa subu 95.7 0.0065 2.2E-07 44.0 2.9 22 15-36 60-81 (353)
484 1tf7_A KAIC; homohexamer, hexa 95.7 0.0062 2.1E-07 47.0 3.0 19 16-34 42-60 (525)
485 4b4t_L 26S protease subunit RP 95.7 0.0067 2.3E-07 45.9 3.0 23 14-36 216-238 (437)
486 2bjv_A PSP operon transcriptio 95.6 0.014 4.7E-07 40.8 4.4 24 14-37 30-53 (265)
487 3qks_A DNA double-strand break 95.6 0.0076 2.6E-07 40.7 3.0 19 16-34 26-44 (203)
488 3uk6_A RUVB-like 2; hexameric 95.6 0.0077 2.6E-07 44.0 3.1 23 14-36 71-93 (368)
489 4edh_A DTMP kinase, thymidylat 95.6 0.0078 2.7E-07 41.0 2.9 22 14-35 7-28 (213)
490 2fna_A Conserved hypothetical 95.6 0.0072 2.5E-07 43.6 2.9 22 15-36 32-53 (357)
491 3cr8_A Sulfate adenylyltranfer 95.6 0.0047 1.6E-07 48.1 1.9 24 13-36 369-392 (552)
492 2r62_A Cell division protease 95.6 0.0031 1.1E-07 44.1 0.9 21 15-35 46-66 (268)
493 4ag6_A VIRB4 ATPase, type IV s 95.5 0.0067 2.3E-07 45.0 2.6 25 12-36 34-58 (392)
494 2qgz_A Helicase loader, putati 95.5 0.0088 3E-07 43.1 3.2 22 14-35 153-174 (308)
495 4f4c_A Multidrug resistance pr 95.5 0.0073 2.5E-07 51.7 3.1 21 15-35 446-466 (1321)
496 2qby_B CDC6 homolog 3, cell di 95.5 0.0078 2.7E-07 44.1 2.9 23 14-36 46-68 (384)
497 3pxg_A Negative regulator of g 95.5 0.0077 2.6E-07 45.9 2.9 23 14-36 202-224 (468)
498 3m6a_A ATP-dependent protease 95.5 0.0074 2.5E-07 46.9 2.9 22 14-35 109-130 (543)
499 4b4t_J 26S protease regulatory 95.5 0.008 2.7E-07 45.0 2.9 23 14-36 183-205 (405)
500 3v9p_A DTMP kinase, thymidylat 95.5 0.0062 2.1E-07 42.0 2.2 23 13-35 25-47 (227)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.3e-33 Score=192.84 Aligned_cols=142 Identities=33% Similarity=0.586 Sum_probs=110.0
Q ss_pred CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (154)
Q Consensus 1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (154)
|+......+..+.+||+++|.+|+|||||+++|..+.+ ..+.|+.+.++.......++..+.+.+|||+|++++..++.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 44444444445679999999999999999999999998 66778999899888999999999999999999999999999
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhh
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWH 144 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~ 144 (154)
.+++.++++++|||++++++|+.+.. |...+... ...+.|++|||||+|+.+.+++..++...
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~ 143 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGER 143 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred HHhccccEEEEEeecchhHHHHHHHH-HHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhh
Confidence 99999999999999999999999998 88887766 45678999999999999888876665544
No 2
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=4.3e-29 Score=168.24 Aligned_cols=139 Identities=31% Similarity=0.497 Sum_probs=113.2
Q ss_pred CCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 031704 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS 80 (154)
Q Consensus 2 ~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (154)
++...+......+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ......++..+.+.+|||||++.+...+..
T Consensus 7 ~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 85 (183)
T 3kkq_A 7 ATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQ 85 (183)
T ss_dssp -------CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHH
T ss_pred ccccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHH
Confidence 3344445566789999999999999999999999887 45556666555 677788899999999999999999999999
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+++.+|++++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~ 146 (183)
T 3kkq_A 86 YMRTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQG 146 (183)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHH
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHH
Confidence 9999999999999999999999988 887776655667889999999999987666654443
No 3
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=171.78 Aligned_cols=134 Identities=44% Similarity=0.860 Sum_probs=107.8
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
++..+..+||+++|.+|+|||||++++.++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 45567889999999999999999999999988 55667777778778888888889999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|++++|||++++.+++.+.. |...+... ...+.|++||+||+|+.+++++..++.
T Consensus 103 d~iilv~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~ 157 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPH-WIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEA 157 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCccccccccCHHHH
Confidence 99999999999999999887 88888776 356789999999999987655544333
No 4
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=8.1e-29 Score=165.93 Aligned_cols=134 Identities=46% Similarity=0.830 Sum_probs=114.1
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
....+..+||+++|.+|+|||||++++.++.+ ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 88 (179)
T 1z0f_A 9 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 88 (179)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTC
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccC
Confidence 34566789999999999999999999999987 55667777788888888899999999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++..++.
T Consensus 89 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~ 143 (179)
T 1z0f_A 89 AGALMVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEA 143 (179)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHH
T ss_pred CEEEEEEeCcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHH
Confidence 99999999999999998887 88877766 446789999999999976655544333
No 5
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=1e-28 Score=167.43 Aligned_cols=132 Identities=37% Similarity=0.697 Sum_probs=113.0
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCcc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRGAQ 86 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~ 86 (154)
.....+||+++|.+|+|||||+++++++.+ ....++.+.++....+.+++..+.+.+|||||++.+. ..+..+++++|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 445679999999999999999999999888 5566777778888888889989999999999999888 78888899999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++++|+|++++.+++.+.. |...+.......+.|+++|+||+|+.+++++..++
T Consensus 96 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 149 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDL 149 (189)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHH
Confidence 9999999999999999888 88888777556788999999999997665554433
No 6
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=3.5e-28 Score=164.86 Aligned_cols=131 Identities=44% Similarity=0.839 Sum_probs=114.1
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
+...+..+||+++|.+|+|||||++++.++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+
T Consensus 16 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 95 (189)
T 2gf9_A 16 PRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGA 95 (189)
T ss_dssp CTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTC
T ss_pred CcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCC
Confidence 44566789999999999999999999999988 56677778788878888888899999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..
T Consensus 96 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~ 147 (189)
T 2gf9_A 96 MGFLLMYDIANQESFAAVQD-WATQIKTY-SWDNAQVILVGNKCDLEDERVVPA 147 (189)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccCCCH
Confidence 99999999999999999888 88888776 356789999999999976655433
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.96 E-value=3.6e-28 Score=163.46 Aligned_cols=130 Identities=27% Similarity=0.386 Sum_probs=109.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+|+|||||++++.++.+ ..+.++.+.++ ...+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 4679999999999999999999998887 55667777666 677788999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 134 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEG 134 (181)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHH
Confidence 9999999999999988 887776665667889999999999987766644443
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=165.36 Aligned_cols=130 Identities=62% Similarity=1.021 Sum_probs=115.1
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
+..+..+||+++|++|+|||||+++++++.+ ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 4456789999999999999999999999988 566788888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..
T Consensus 91 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~ 141 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDY 141 (196)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccccCH
Confidence 9999999999999999988 88888776 456789999999999987765543
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.5e-28 Score=168.66 Aligned_cols=132 Identities=47% Similarity=0.871 Sum_probs=114.4
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
...++.+||+++|.+|+|||||++++.++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 4456789999999999999999999999988 566778888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++++|||++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++...+
T Consensus 101 ~~i~v~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~ 153 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPE-WLREIEQY-ASNKVITVLVGNKIDLAERREVSQQR 153 (201)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHH
Confidence 9999999999999999887 88888776 45678999999999997665554433
No 10
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=5e-28 Score=162.56 Aligned_cols=132 Identities=38% Similarity=0.643 Sum_probs=112.8
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
.....+||+++|++|+|||||++++++..+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 445679999999999999999999999988 4556777778888888888889999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++..++.
T Consensus 88 ~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~ 140 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKK-WVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDA 140 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHH
Confidence 999999999999998887 88877776 446789999999999987665544443
No 11
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.96 E-value=3e-28 Score=165.52 Aligned_cols=133 Identities=46% Similarity=0.803 Sum_probs=111.6
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
.......+||+++|.+|+|||||++++.++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 34567889999999999999999999999988 45567777778888888899999999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
|++++|+|+++..+++.+.. |...+... ...+.|+++|+||+|+...+++..++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~ 148 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTS-WLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREE 148 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccCCccccCHHH
Confidence 99999999999999999888 88887765 45678999999999997655554433
No 12
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.4e-28 Score=162.62 Aligned_cols=129 Identities=55% Similarity=0.923 Sum_probs=111.4
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
..+..+||+++|++|+|||||++++.++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 456789999999999999999999999887 5667788888888888899999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
+++|+|++++.+++.+.. |...+... ..+.|+++|+||+|+...+.+...
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~ 134 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKR-WLHEINQN--CDDVCRILVGNKNDDPERKVVETE 134 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCCCchhcccCHH
Confidence 999999999999999887 88887765 357899999999999766655433
No 13
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=8e-29 Score=168.61 Aligned_cols=133 Identities=50% Similarity=0.884 Sum_probs=109.3
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
+++.+..+||+++|.+|+|||||+++|.++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 45567889999999999999999999999887 55677888888888888899999999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
|++++|+|+++..+++.+.. |.+.+... ...+.|+++|+||+|+.+++++..++
T Consensus 100 d~iilV~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~ 153 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQ 153 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHH
Confidence 99999999999999999887 88887766 45678999999999997666554433
No 14
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=163.43 Aligned_cols=129 Identities=23% Similarity=0.393 Sum_probs=99.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccccccccCccEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FRTLTSSYYRGAQGII 89 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~~v 89 (154)
..+||+++|++|+|||||++++.+..+....++.+.+.....+.+++..+.+.+|||||++. +......+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 56899999999999999999999998866667777777778888899999999999999887 5556677788999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+|||++++.+++.+.. |...+.......+.|+++|+||+|+.+.+++..++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~ 133 (175)
T 2nzj_A 83 IVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEE 133 (175)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHH
Confidence 9999999999999887 87777665345578999999999998766654443
No 15
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=3.4e-28 Score=164.13 Aligned_cols=132 Identities=45% Similarity=0.833 Sum_probs=113.8
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
..++.+||+++|++|+|||||+++++++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 346789999999999999999999999988 5666777878888888889988999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+..++.+...+.
T Consensus 86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~ 138 (186)
T 2bme_A 86 ALLVYDITSRETYNALTN-WLTDARML-ASQNIVIILCGNKKDLDADREVTFLEA 138 (186)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHH
Confidence 999999999999999887 88777765 446789999999999976655544333
No 16
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-28 Score=170.44 Aligned_cols=140 Identities=41% Similarity=0.738 Sum_probs=107.9
Q ss_pred CCCCcccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 031704 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (154)
Q Consensus 1 m~~~~~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (154)
|.+.......+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 44444455567889999999999999999999999988 45667778788888888899899999999999999999999
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
.+++.+|++++|||++++.+++.+.. |+..+... ...+.|++||+||+|+..++++...+.
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~ 141 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNH-WLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEES 141 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHH-HHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHH
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccCHHHH
Confidence 99999999999999999999999887 88888766 356789999999999976655544333
No 17
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=6.1e-28 Score=165.23 Aligned_cols=129 Identities=44% Similarity=0.864 Sum_probs=112.8
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
..+..+||+++|.+|+|||||+++|++..+ ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 345779999999999999999999999988 5667777888888888888999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
+++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..
T Consensus 84 ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~ 133 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQD-WSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSS 133 (203)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccCcccccCH
Confidence 999999999999998888 88888765 346789999999999987655543
No 18
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.96 E-value=1.3e-28 Score=165.93 Aligned_cols=130 Identities=51% Similarity=0.944 Sum_probs=88.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
.+..+||+++|++|+|||||++++.++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 45789999999999999999999998887 45567777778777888899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..++
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~ 135 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRN-WIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKER 135 (183)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHH
Confidence 99999999999999888 88887765 34578999999999998766554433
No 19
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=8.3e-28 Score=161.35 Aligned_cols=130 Identities=43% Similarity=0.808 Sum_probs=105.2
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
..+..+||+++|.+|+|||||++++.++.+. .+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4467899999999999999999999998883 55677777887777788999999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+...
T Consensus 86 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~ 137 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQA-WLTEIHEY-AQHDVALMLLGNKVDSAHERVVKRE 137 (180)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccCcccccCHH
Confidence 9999999999999999887 88887776 3467899999999999876655443
No 20
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.96 E-value=1e-27 Score=164.57 Aligned_cols=130 Identities=60% Similarity=0.979 Sum_probs=114.3
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
.+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 45779999999999999999999999988 56678888888888888999999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..++
T Consensus 85 ilv~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~ 135 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKM-WLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDV 135 (206)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHH
Confidence 99999999999999888 88888776 35578999999999998766554433
No 21
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=4.4e-28 Score=160.97 Aligned_cols=130 Identities=40% Similarity=0.678 Sum_probs=111.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+|+|||||+++++++.+ ....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4679999999999999999999999887 455677787887888888888999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+...+.
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~ 134 (170)
T 1r2q_A 84 VVYDITNEESFARAKN-WVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEA 134 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCccccccCHHHH
Confidence 9999999999998887 88777765 346789999999999976655544333
No 22
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=3.4e-28 Score=165.28 Aligned_cols=132 Identities=41% Similarity=0.764 Sum_probs=113.6
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
+..+..+||+++|.+|+|||||+++|.+..+ ....++.+.++....+.+++..+.+.+|||||.+.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 4566789999999999999999999999988 455677788888888888889999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+...+.+...+
T Consensus 100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~ 152 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVER-WLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEE 152 (193)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECCCcccccccCHHH
Confidence 9999999999999998887 88777765 34678999999999997665544333
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.1e-28 Score=165.01 Aligned_cols=133 Identities=39% Similarity=0.676 Sum_probs=113.9
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
+...+.+||+++|.+|+|||||+++++++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 3456789999999999999999999999987 567788888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++..++.
T Consensus 98 ~iilV~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~ 151 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKK-WVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDA 151 (192)
T ss_dssp EEEEEEETTCTHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHH
Confidence 9999999999999999877 88888776 456789999999999976555544333
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=1.1e-27 Score=159.20 Aligned_cols=128 Identities=38% Similarity=0.699 Sum_probs=112.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
.+.+||+++|++|+|||||++++.+..+ ..+.++.+.++......+.+..+.+.+|||||.+.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999999987 566788888888888888999999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
+|+|++++.+++.+.. |...+... .....|+++|+||+|+.+++++..+
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~ 132 (170)
T 1z0j_A 84 IVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMER 132 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECCccccccccCHH
Confidence 9999999999998877 88888775 4567899999999999876555333
No 25
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=7.7e-28 Score=159.80 Aligned_cols=121 Identities=44% Similarity=0.786 Sum_probs=108.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
+.+||+++|++|+|||||+++++++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 358999999999999999999999987 5667888888888888889999999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+|++++.+++.+.. |...+... ...+.|+++|+||+|+..+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQ-ASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGS
T ss_pred EEecCChHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCCcccc
Confidence 999999999999888 88777765 3567899999999999755
No 26
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=1.3e-27 Score=159.94 Aligned_cols=122 Identities=39% Similarity=0.771 Sum_probs=105.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+||+++|++|+|||||+++++++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999887 56677888888888888899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCC
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKV 132 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~ 132 (154)
++|+|+++..+++.+.. |...+..... ..+.|+++|+||+|+.
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc
Confidence 99999999999998877 8877766532 2678999999999997
No 27
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=3.9e-28 Score=161.44 Aligned_cols=130 Identities=38% Similarity=0.746 Sum_probs=105.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
.+..+||+++|++|+|||||++++.++.+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999888 55667778778778888888899999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++..++
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~ 133 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKN-WVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQE 133 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccccCHHH
Confidence 99999999999999887 88777665 33578999999999997765554433
No 28
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.96 E-value=5.9e-28 Score=161.99 Aligned_cols=131 Identities=31% Similarity=0.498 Sum_probs=109.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+||+++|.+|+|||||++++++..+ ..+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34679999999999999999999999987 455566665554 6677888889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+.+++...+.
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 137 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEA 137 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHH
Confidence 99999999999999888 777664443566789999999999987665544333
No 29
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=1.2e-27 Score=162.04 Aligned_cols=130 Identities=35% Similarity=0.717 Sum_probs=110.5
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeE-EEEEEECCe---------EEEEEEEeCCCccccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFK-IKHVALGGK---------KMKLAIWDTAGQERFRTL 77 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~~~~~ 77 (154)
..+..+||+++|++|+|||||++++.++.+ ....++.+.++. ...+..++. .+.+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 456789999999999999999999999887 556677777666 556666655 789999999999999999
Q ss_pred ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 78 ~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
+..+++.+|++++|+|++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~ 147 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE 147 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCH
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCH
Confidence 9999999999999999999999999887 888887764557889999999999976555443
No 30
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.96 E-value=7.5e-28 Score=164.81 Aligned_cols=131 Identities=27% Similarity=0.414 Sum_probs=103.2
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
+....+||+++|.+|+|||||+++|.++.+ ..+.++.+..+ ......++..+.+.+|||||++.+...+..+++.+|+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 98 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence 345789999999999999999999999988 45556666555 5566667778899999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+++|||++++.+++.+.. |...+.......+.|+++|+||+|+..++.+...+
T Consensus 99 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~ 151 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVE 151 (201)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHH
Confidence 999999999999999987 88887766556688999999999998766654433
No 31
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=7.4e-28 Score=161.22 Aligned_cols=129 Identities=36% Similarity=0.651 Sum_probs=111.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34669999999999999999999999888 55667777788888888899999999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.+++++...
T Consensus 91 i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~ 140 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSK-WIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTE 140 (179)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCcccccCcCCHH
Confidence 99999999999998887 87777665 3467899999999999766655433
No 32
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.5e-27 Score=160.84 Aligned_cols=124 Identities=64% Similarity=1.068 Sum_probs=110.5
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
.....+||+++|++|+|||||++++.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 345679999999999999999999999988 5667788888888888889999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+++|+|++++.+++.+.. |...+.......+.|+++|+||+|+..
T Consensus 91 ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 999999999999999887 888887765556789999999999953
No 33
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.96 E-value=6.7e-28 Score=159.77 Aligned_cols=128 Identities=34% Similarity=0.518 Sum_probs=106.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999887 45556666444 35566788889999999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
||++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 131 (167)
T 1c1y_A 82 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQG 131 (167)
T ss_dssp EETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHH
Confidence 99999999999888 777776654566889999999999987665544333
No 34
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=164.01 Aligned_cols=140 Identities=33% Similarity=0.551 Sum_probs=110.3
Q ss_pred CCCCcc-cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 031704 1 MASSTS-QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT 78 (154)
Q Consensus 1 m~~~~~-~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (154)
|+...+ ..+....+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+
T Consensus 1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (206)
T 2bov_A 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR 79 (206)
T ss_dssp ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence 444433 34556789999999999999999999999887 44455555444 4567788888999999999999999999
Q ss_pred cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 79 ~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
..+++.+|++++|||+++..+++.+.. |...+.......+.|+++|+||+|+.+++++..++.
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 142 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 142 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHH
Confidence 999999999999999999999999887 888887765556889999999999987665544443
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=1e-27 Score=159.03 Aligned_cols=126 Identities=32% Similarity=0.638 Sum_probs=109.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
+..+||+++|++|+|||||++++.++.+ ..+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999888 566777777888888888888999999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
+|+|++++.+++.+.. |...+.... .+.|+++|+||+|+.+++++..
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~ 129 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKN 129 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCH
Confidence 9999999999999888 887776653 6789999999999976555433
No 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.96 E-value=5.3e-28 Score=165.13 Aligned_cols=134 Identities=25% Similarity=0.326 Sum_probs=106.5
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRGA 85 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~ 85 (154)
......+||+++|.+|+|||||+++|.+... ....++.+.+.....+.+++..+.+.+|||+|++.+.. +...+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 4456779999999999999999999976544 23345555566667778899999999999999987665 667778899
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|++++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus 98 d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 153 (195)
T 3cbq_A 98 DAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG 153 (195)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHH
Confidence 99999999999999999988 888777664446789999999999987666654444
No 37
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.95 E-value=6.5e-28 Score=165.13 Aligned_cols=132 Identities=45% Similarity=0.783 Sum_probs=104.7
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
...+..+||+++|.+|+|||||+++++++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 3456789999999999999999999999888 556677777788888888998999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+..++.+...+
T Consensus 100 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~ 152 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAA-WLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLE 152 (200)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCCcccccccCHHH
Confidence 9999999999999999887 88777765 34678999999999997665554333
No 38
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.95 E-value=1.1e-27 Score=158.73 Aligned_cols=128 Identities=24% Similarity=0.355 Sum_probs=86.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~ 92 (154)
.+||+++|++|+|||||++++.+.......++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 4799999999999999999999877755556666555 456678899999999999999999999999999999999999
Q ss_pred ECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|++++.+++.+.. |...+.......+.|+++|+||+|+.+++.+...+.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 129 (166)
T 3q72_A 81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEG 129 (166)
T ss_dssp ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHH
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHH
Confidence 9999999999988 777776654567889999999999987766644433
No 39
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.95 E-value=1.3e-27 Score=165.35 Aligned_cols=125 Identities=25% Similarity=0.479 Sum_probs=102.5
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
+......+||+++|.+|+|||||+++|+++.+ ..+.++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++++
T Consensus 21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 34455779999999999999999999999988 55567777665 45566778889999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|++++|||++++.+++.+...|...+... ..+.|+++|+||+|+.++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~ 146 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTD 146 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGC
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence 99999999999999998544499888876 357899999999999753
No 40
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.95 E-value=1.7e-27 Score=158.19 Aligned_cols=119 Identities=59% Similarity=0.976 Sum_probs=100.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+||+++|++|+|||||++++.++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999988 5666777777877888888888999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDME 121 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCT
T ss_pred EEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCC
Confidence 999999999998887 88877765 34578999999999994
No 41
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.95 E-value=4.5e-27 Score=158.78 Aligned_cols=123 Identities=28% Similarity=0.496 Sum_probs=102.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|++|+|||||++++.++.+....+.+..+.....+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999998884433333345555677788999999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|||++++.+++.+.. |...+.......+.|+++|+||+|+...
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 82 VFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSSSC
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCccc
Confidence 999999999999888 8877777656678999999999999743
No 42
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.95 E-value=1.5e-27 Score=157.84 Aligned_cols=127 Identities=33% Similarity=0.552 Sum_probs=105.7
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|++|+|||||++++.++.+ ..+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999887 34445544 33456677888899999999999999998888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+|++++.+++.+.. |...+.......+.|+++|+||+|+.+++++...+
T Consensus 82 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 130 (167)
T 1kao_A 82 YSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSE 130 (167)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHH
T ss_pred EeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHH
Confidence 99999999999888 77666665455688999999999997665554333
No 43
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.95 E-value=4.3e-27 Score=160.05 Aligned_cols=124 Identities=30% Similarity=0.551 Sum_probs=105.9
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
......+||+++|.+|+|||||++++.++.+ ..+.++.+.++. ..+..++..+.+.+|||||++.+...+..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 4556789999999999999999999999988 455677766554 45678889999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++++|||++++.+++.+...|...+... ..+.|+++|+||+|+.++
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccC
Confidence 9999999999999999866588888765 457899999999999754
No 44
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=162.05 Aligned_cols=131 Identities=23% Similarity=0.369 Sum_probs=103.6
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
.....+||+++|.+|+|||||+++++++.+ ..+.++.+..+ .....+++..+.+.+|||+|++.+... ..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 445779999999999999999999999987 55567776655 455677889999999999999988775 568899999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+++|||++++++++.+.. |...+..... ..+.|+++|+||+|+.+++++..++.
T Consensus 95 ~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 150 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150 (187)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHH
Confidence 999999999999999887 8877776522 25789999999999976666544433
No 45
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8.4e-29 Score=168.24 Aligned_cols=132 Identities=47% Similarity=0.865 Sum_probs=114.6
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
+...+..+||+++|.+|+|||||+++|.++.+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++.+
T Consensus 17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 96 (191)
T 3dz8_A 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA 96 (191)
T ss_dssp TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence 44566889999999999999999999999887 55567777778888888888889999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
|++++|||++++.+++.+.. |...+... ...+.|+++|+||+|+..++.+...
T Consensus 97 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~ 149 (191)
T 3dz8_A 97 MGFILMYDITNEESFNAVQD-WATQIKTY-SWDNAQVILVGNKCDMEEERVVPTE 149 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHH
Confidence 99999999999999999988 88888776 4567899999999999766555443
No 46
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=2e-28 Score=167.38 Aligned_cols=129 Identities=63% Similarity=1.029 Sum_probs=107.0
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
..+..+||+++|.+|+|||||+++|.+..+ ....++.+.++....+..++..+.+.+|||||++.+...+..+++++|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 446789999999999999999999999887 4556777778888888899999999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
+++|||++++.+++.+.. |...+... ...+.|+++|+||+|+.+++.+..
T Consensus 109 ~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~ 158 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDY 158 (199)
T ss_dssp EEECC-CCCSHHHHHHHH-HHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCS
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHh-ccCCCCEEEEEECccCCccccCCH
Confidence 999999999999999988 88888665 445789999999999987665543
No 47
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=5.7e-27 Score=161.31 Aligned_cols=123 Identities=58% Similarity=0.973 Sum_probs=106.1
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
......+||+++|++|+|||||++++++..+ ....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 4456679999999999999999999999887 566778887888888888998999999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
++++|+|++++.+++.+.. |...+... ...+.|+++|+||+|+.
T Consensus 95 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 95 GIILVYDVTDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDME 138 (213)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-TTTCSEEEEEEECTTCS
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCc
Confidence 9999999999999998887 88777765 34578999999999994
No 48
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.95 E-value=9.8e-28 Score=164.00 Aligned_cols=123 Identities=40% Similarity=0.774 Sum_probs=97.4
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
......+||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 3455679999999999999999999999987 566777787888888889999999999999999999998999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
++++|||++++.+++.+.. |.+.+... ...+.|+++|+||+|+.
T Consensus 103 ~iilv~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIRE-WVDMIEDA-AHETVPIMLVGNKADIR 146 (199)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-C---CCEEEEEECGGGH
T ss_pred EEEEEEECCChHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccc
Confidence 9999999999999999887 88887765 44578999999999996
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.95 E-value=3.2e-27 Score=156.98 Aligned_cols=129 Identities=24% Similarity=0.319 Sum_probs=96.0
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRGAQGIIM 90 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~v~ 90 (154)
.+||+++|++|+|||||++++.+... ....++.+.+.....+.+++..+.+.+||+||++.+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999997766 34444555667777788899999999999999988876 66677889999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|||++++++++.+.. |...+.......+.|+++|+||+|+.+++.+..++.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 132 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEG 132 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHH
Confidence 999999999999988 777777664556889999999999986666554443
No 50
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.95 E-value=6.6e-27 Score=160.34 Aligned_cols=123 Identities=37% Similarity=0.722 Sum_probs=106.2
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+||+++|.+|+|||||++++++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 34679999999999999999999999987 56677777788888888888889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCC---CCCcEEEEEeCCCCCC
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVDKVC 133 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~ivv~nK~Dl~~ 133 (154)
++|+|++++.+++.+.. |...+...... .+.|+++|+||+|+.+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 131 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLEN 131 (207)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSSC
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCcc
Confidence 99999999999998877 87776654321 4679999999999973
No 51
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.95 E-value=4.7e-27 Score=161.66 Aligned_cols=123 Identities=26% Similarity=0.555 Sum_probs=103.1
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
......+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 3456779999999999999999999999988 44566666555 345667888899999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
++++|||++++.+++.+...|...+.... .+.|+++|+||+|+.+
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT 146 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGG
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhcc
Confidence 99999999999999998544888887652 5789999999999975
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.95 E-value=3.2e-27 Score=156.41 Aligned_cols=129 Identities=33% Similarity=0.585 Sum_probs=104.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999887 44445555443 4556788888999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|+|++++.+++.+.. |...+.......+.|+++|+||+|+.+++++..++.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~ 132 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEA 132 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHH
Confidence 999999999999888 887777765556889999999999977655544333
No 53
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.95 E-value=6.1e-27 Score=158.47 Aligned_cols=125 Identities=20% Similarity=0.317 Sum_probs=102.3
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
......+||+++|.+|+|||||+++++++.+. .+.++ +..+ ...+.+++..+.+.+|||+|++.+. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 45567899999999999999999999999984 34454 4333 4777889999999999999998876 678899
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC--Cchhhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV--CPWRLFLS 140 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~--~~~~~~~~ 140 (154)
++++|||++++.+++.+.. |...+.......+.|+++|+||+|+. ..+.+..+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~ 142 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDS 142 (184)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHH
Confidence 9999999999999999988 98888776444678999999999994 34444433
No 54
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.4e-26 Score=157.47 Aligned_cols=123 Identities=31% Similarity=0.570 Sum_probs=105.2
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
.....+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345779999999999999999999999987 45556665554 4556778888999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++|||++++.+++.+...|...+... ..+.|+++|+||+|+.+.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence 999999999999999885588888775 347899999999999765
No 55
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=2.4e-27 Score=164.49 Aligned_cols=127 Identities=35% Similarity=0.575 Sum_probs=111.2
Q ss_pred ccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 031704 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (154)
Q Consensus 6 ~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (154)
.+......+||+++|.+|+|||||+++++.+.+ ..+.++.+.+.....+..++..+.+.+|||||++.+...+..++++
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 344556779999999999999999999877766 5567888888888888889999999999999999999999999999
Q ss_pred ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+|++++|||++++.+++.+.. |...+.... .+.|+++|+||+|+.+..
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~ 135 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDIKDRK 135 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHH-HHHHHHHHS--TTCCEEEEEECTTSSSCS
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECCcccccc
Confidence 999999999999999999988 888887762 478999999999997544
No 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.95 E-value=8.6e-27 Score=157.42 Aligned_cols=121 Identities=26% Similarity=0.562 Sum_probs=102.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+||+++|++|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 35679999999999999999999999888 45566666554 34567788889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
++|||++++.+++.+...|...+.... .+.|+++|+||+|+.+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRT 125 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGG
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhc
Confidence 999999999999998555888887652 5789999999999975
No 57
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.95 E-value=4.7e-27 Score=158.30 Aligned_cols=130 Identities=33% Similarity=0.569 Sum_probs=107.5
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+||+++|++|+|||||++++.+..+ ..+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 44679999999999999999999999888 44445555443 45567788889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
++|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++++...+
T Consensus 94 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~ 145 (187)
T 2a9k_A 94 LCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEE 145 (187)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHH
Confidence 99999999999999888 88777776556688999999999997765554433
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.95 E-value=6.1e-27 Score=157.12 Aligned_cols=124 Identities=36% Similarity=0.720 Sum_probs=93.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
....+||+++|++|+|||||++++.+..+ ..+.++.+.++....+.++ +..+.+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 34679999999999999999999999887 5566777777777777776 567899999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcC---CCCCcEEEEEeCCCCCCc
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~Dl~~~ 134 (154)
+++|+|++++.+++.+.. |...+..... ..+.|+++|+||+|+...
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 999999999999999888 8777765532 257899999999999644
No 59
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=1.1e-27 Score=165.50 Aligned_cols=132 Identities=38% Similarity=0.748 Sum_probs=108.5
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe----------EEEEEEEeCCCcccccc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK----------KMKLAIWDTAGQERFRT 76 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~ 76 (154)
...++.+||+++|.+|+|||||+++|++..+ ..+.++.+.++....+.+++. .+.+.+|||||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 3456789999999999999999999999887 445566666666666666665 78999999999999999
Q ss_pred cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
.+..+++.+|++++|+|+++..+++.+.. |+..+.......+.|+++|+||+|+.+++.+...
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~ 162 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNER 162 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHH
Confidence 99999999999999999999999998887 8777665533367899999999999766555433
No 60
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=2.2e-26 Score=157.51 Aligned_cols=122 Identities=32% Similarity=0.601 Sum_probs=105.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+||+++|.+|+|||||++++.++.+ ..+.++.+.++. ..+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 45789999999999999999999999888 455566665554 3467788889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++|||++++.+++.+...|...+... ..+.|+++|+||+|+..+
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcC
Confidence 99999999999999865588888765 247899999999999765
No 61
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.95 E-value=9.6e-27 Score=159.05 Aligned_cols=123 Identities=28% Similarity=0.493 Sum_probs=98.3
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
.....+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 456789999999999999999999999887 44556665444 4566778888999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++|||++++.+++.+...|...+.... .+.|+++|+||+|+..+
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLRED 139 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhc
Confidence 9999999999999998755888887752 47899999999999753
No 62
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.95 E-value=1.9e-27 Score=162.98 Aligned_cols=131 Identities=27% Similarity=0.433 Sum_probs=80.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC--CC-CCCCCcceeeeEEEEEEECCe--EEEEEEEeCCCcccccccccccccCc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVALGGK--KMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
...+||+++|.+|+|||||++++.+. .+ ..+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 57799999999999999999999998 66 455667766777777888876 88999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCC-chhhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVC-PWRLFLSGF 142 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~-~~~~~~~~~ 142 (154)
|++++|+|++++.+++.+.. |...+..... ..+.|+++|+||+|+.. .+.+..++.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~ 156 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMA 156 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHH
T ss_pred cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHH
Confidence 99999999999999999887 8888887633 26789999999999987 555544333
No 63
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1e-26 Score=160.69 Aligned_cols=132 Identities=23% Similarity=0.317 Sum_probs=103.3
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGA 85 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~ 85 (154)
.....+||+++|.+|+|||||+++|.+... ....++.+.++....+.+++..+.+.+|||+|.+. +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 445679999999999999999999997543 44445666666677788899999999999999876 455566778899
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
|++++|||+++..+|+.+.. |...+.......+.|++||+||+||...+.+..++
T Consensus 113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e 167 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE 167 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHH
Confidence 99999999999999999888 77766654334578999999999997666554443
No 64
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.95 E-value=2.5e-27 Score=158.77 Aligned_cols=129 Identities=33% Similarity=0.586 Sum_probs=106.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
.+.+||+++|++|+|||||++++.++.+ ..+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4569999999999999999999999887 34456777777777787776 678999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCc-EEEEEeCCCCCCchhhhhh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCI-KLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~-~ivv~nK~Dl~~~~~~~~~ 140 (154)
++|+|++++.+++.+.. |...+..... ....| +++|+||+|+.+++.+..+
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~ 136 (178)
T 2hxs_A 84 LLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE 136 (178)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHH
Confidence 99999999999998887 8877766422 12344 8999999999766555433
No 65
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.95 E-value=4.2e-26 Score=154.52 Aligned_cols=123 Identities=31% Similarity=0.519 Sum_probs=93.0
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 87 (154)
++-..+||+++|.+|+|||||++++.++.+. .+.++.+. .....+..++..+.+.+|||||++.+...+..+++.+|+
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCE
Confidence 3446799999999999999999999998873 34444443 334567778888999999999999999999999999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+++|+|+++..+++.+.. |...+.......+.|+++|+||+|+..
T Consensus 96 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 96 FLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 999999999999998877 888877765556789999999999975
No 66
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=8.2e-27 Score=158.98 Aligned_cols=129 Identities=28% Similarity=0.438 Sum_probs=106.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4569999999999999999999999988 44555655444 45567788899999999999988 677788899999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
+|||++++.+++.+.. |...+.......+.|+++|+||+|+.+++++...+.
T Consensus 104 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~ 155 (196)
T 2atv_A 104 LVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEG 155 (196)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHH
Confidence 9999999999999888 887777765566889999999999987655544333
No 67
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.95 E-value=1.2e-26 Score=160.43 Aligned_cols=123 Identities=31% Similarity=0.571 Sum_probs=86.0
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
..+.+||+++|.+|+|||||++++.++.+ ..+.++.+.. ....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 34679999999999999999999999887 3444555433 345667888899999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++|||++++.+++.+...|...+... ..+.|+++|+||+|+..++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~ 154 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDK 154 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccc
Confidence 99999999999999875588888765 3568999999999997654
No 68
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.95 E-value=2.6e-26 Score=153.98 Aligned_cols=125 Identities=18% Similarity=0.280 Sum_probs=100.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|.+|+|||||++++.++.+..+.++.+..+ ...+.+++..+.+.+|||||++. ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 356999999999999999999999999866777776444 56677888999999999999876 456788999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCC--Cchhhhhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKV--CPWRLFLSGF 142 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~--~~~~~~~~~~ 142 (154)
|||++++.+++.+.. |.+.+..... ..+.|+++|+||+|+. ..+.+..++.
T Consensus 79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~ 133 (178)
T 2iwr_A 79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA 133 (178)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHH
Confidence 999999999999888 7665554422 3578999999999994 3444444333
No 69
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.94 E-value=2.7e-26 Score=154.59 Aligned_cols=120 Identities=30% Similarity=0.545 Sum_probs=102.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 569999999999999999999999887 44455555443 4556778899999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|||++++.+++.+...|...+.... .+.|+++|+||+|+.++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD 124 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEccccccc
Confidence 9999999999998855888887752 37899999999999754
No 70
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.94 E-value=1.6e-26 Score=158.73 Aligned_cols=124 Identities=29% Similarity=0.494 Sum_probs=102.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ 88 (154)
....+||+++|.+|+|||||++++.++.+ ..+.++.+ ......+..++..+.+.+|||||++.+...+..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 34679999999999999999999999888 34455554 34455667788889999999999999999999999999999
Q ss_pred EEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 89 v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++|||++++.+++.+...|...+.... .+.|+++|+||+|+..++.
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchh
Confidence 999999999999999855988888763 6789999999999976554
No 71
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.94 E-value=2e-26 Score=158.73 Aligned_cols=123 Identities=30% Similarity=0.590 Sum_probs=103.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4569999999999999999999999887 45556666544 455667888899999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+|||++++.+++.+...|...+.... .+.|++||+||+|+.+++.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~ 130 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKG 130 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCcc
Confidence 99999999999998755988887763 4789999999999976654
No 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.94 E-value=3.8e-26 Score=155.70 Aligned_cols=127 Identities=37% Similarity=0.677 Sum_probs=104.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeE-----------------------------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK----------------------------- 60 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------- 60 (154)
...+||+++|++|+|||||+++|++..+ ..+.++.+.++....+..++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 3569999999999999999999999988 5566777777777777776654
Q ss_pred --------EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 61 --------MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 61 --------~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+.+.+|||||++.+...+..+++.+|++++|+|++++.+++.+.. |...+.... +.|+++|+||+| .
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~---~~piilv~NK~D-~ 159 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS---NYIIILVANKID-K 159 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS---CCEEEEEEECTT-C
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC---CCcEEEEEECCC-c
Confidence 899999999999999999999999999999999999999998887 888777652 389999999999 4
Q ss_pred Cchhhhhhhh
Q 031704 133 CPWRLFLSGF 142 (154)
Q Consensus 133 ~~~~~~~~~~ 142 (154)
.++++..++.
T Consensus 160 ~~~~~~~~~~ 169 (208)
T 3clv_A 160 NKFQVDILEV 169 (208)
T ss_dssp C-CCSCHHHH
T ss_pred ccccCCHHHH
Confidence 4444444333
No 73
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.94 E-value=2.4e-26 Score=157.24 Aligned_cols=118 Identities=22% Similarity=0.360 Sum_probs=91.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+.+||+++|++|+|||||++++.++.+..+.++.+.+. ..+.+++ +.+.+|||||++.++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 345899999999999999999999988866666666543 4555665 789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|+|++++++++.+.. |...+.......+.|+++|+||+|+.+
T Consensus 99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc
Confidence 999999999999888 766665443446789999999999975
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.94 E-value=8.9e-26 Score=148.99 Aligned_cols=119 Identities=32% Similarity=0.572 Sum_probs=101.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
.+||+++|++|+|||||++++.++.+. ...++.+. .....+..++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 479999999999999999999998873 44444443 3355667788889999999999999998888899999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+|+++..+++.+.. |...+.......+.|+++|+||+|+..
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 99999999998877 888777765556789999999999976
No 75
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.94 E-value=7.3e-26 Score=150.57 Aligned_cols=118 Identities=24% Similarity=0.384 Sum_probs=97.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+.+||+++|++|+|||||++++.++.+....++.+.+ ...+.++ .+.+.+|||||++.+...+..+++.+|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 4589999999999999999999999887667776643 3344444 46889999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+|++++.+++.... |...+.......+.|+++|+||+|+.++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 82 VDSCDRDRIGISKS-ELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp EETTCCTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EECCCHHHHHHHHH-HHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 99999999998887 5555444323467899999999999765
No 76
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.94 E-value=1.8e-26 Score=157.14 Aligned_cols=124 Identities=16% Similarity=0.285 Sum_probs=95.8
Q ss_pred ccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 031704 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83 (154)
Q Consensus 6 ~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (154)
+.++....+||+++|.+|+|||||+++|+++.+. .+.++.+.+.. .+. ...+.+.+|||||++.+...+..+++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 3456778899999999999999999999999983 44677764332 333 34578999999999999999999999
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCC-------CCCcEEEEEeCCCCCCc
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN-------QDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~~~~~ivv~nK~Dl~~~ 134 (154)
.+|++++|+|++++.+++.+.. |...+...... .+.|+++|+||+|+..+
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKS-EIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHH-HHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred cCCEEEEEEECCcHHHHHHHHH-HHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 9999999999999999999988 55554432111 37899999999999766
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=2.9e-26 Score=152.42 Aligned_cols=126 Identities=26% Similarity=0.401 Sum_probs=101.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+||+++|.+|+|||||++++.++.+ ..+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 358999999999999999999999887 44555555444 3455678888899999999999999888889999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCCchhhhh
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
|+|++++.+++.+.. |...+.... ...+.|+++|+||+|+.+++++..
T Consensus 81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~ 129 (172)
T 2erx_A 81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQS 129 (172)
T ss_dssp EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCH
Confidence 999999999988887 665555442 235789999999999976655533
No 78
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.94 E-value=1.2e-25 Score=152.83 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=98.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+.+||+++|++|+|||||++++.++.+..+.++.+.+ ...+.+++ +.+.+|||||++.++..+..+++.+|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34579999999999999999999999887666776653 45566665 789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
|+|++++.+++.+.. |...+.......+.|+++|+||+|+..
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 999999999999888 666655443446789999999999975
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=9e-26 Score=155.16 Aligned_cols=121 Identities=32% Similarity=0.593 Sum_probs=99.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+|+|||||++++.++.+ ..+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4678999999999999999999999888 344566655544 34677888899999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+|||++++.+++.+...|...+... ..+.|+++|+||+|+..+
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSD 144 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhcc
Confidence 9999999999999865588888765 257899999999999765
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.94 E-value=1.9e-26 Score=159.47 Aligned_cols=133 Identities=32% Similarity=0.514 Sum_probs=103.8
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (154)
......+||+++|.+|+|||||+++++++.+ ..+.++.+.+......... +..+.+.+|||||++.+...+..+++.+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 3455779999999999999999999998887 4445666665555555443 4458999999999999999999999999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhh
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGF 142 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~ 142 (154)
|++++|+|+++..+++.+.. |...+... ...+.|+++|+||+|+.+.+++...+.
T Consensus 86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~ 140 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLAR-WVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLV 140 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHH
Confidence 99999999999999999887 88887766 345689999999999987666544433
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.94 E-value=1.1e-26 Score=157.74 Aligned_cols=126 Identities=24% Similarity=0.268 Sum_probs=95.6
Q ss_pred ccCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-----------CCcceeeeEEEEE-EECCeEEEEEEEeCCCccc
Q 031704 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL-----------SPTIGVDFKIKHV-ALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 6 ~~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~ 73 (154)
........+||+++|.+|+|||||++++.+.....+ .++.+.++....+ .+++..+.+.+|||||++.
T Consensus 7 ~~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (198)
T 3t1o_A 7 NFANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVF 86 (198)
T ss_dssp ETTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCS
T ss_pred chhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHH
Confidence 344567889999999999999999976665443332 2344444443333 4567788999999999999
Q ss_pred ccccccccccCccEEEEEEECC------CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVT------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+...+..+++++|++++|||++ +.++++.+.. |...+.. ...+.|+++|+||+|+.++
T Consensus 87 ~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~--~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 87 YNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGL--TLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp CSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTC--CTTSSCEEEEEECTTSTTC
T ss_pred HHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhcc--ccCCCCEEEEEEchhcccc
Confidence 9999999999999999999999 4455666655 6655532 3467899999999999765
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.94 E-value=2.5e-26 Score=151.95 Aligned_cols=116 Identities=26% Similarity=0.499 Sum_probs=95.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d 93 (154)
+||+++|++|+|||||++++.++.+....|+.+.. ...+.. ..+.+.+|||||++.+...+..+++++|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 48999999999999999999998886666766633 233333 34689999999999999988889999999999999
Q ss_pred CCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++++++++.+.. |...+.......+.|+++|+||+|+.++
T Consensus 77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 999999998887 6665554334567899999999999765
No 83
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.94 E-value=1.3e-25 Score=152.90 Aligned_cols=130 Identities=23% Similarity=0.349 Sum_probs=100.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGAQG 87 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~~ 87 (154)
...+||+++|.+|+|||||++++.+.. +....++.+.+.....+.+++..+.+.+|||+|.+. +..+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 356999999999999999999999643 344445566666677788899999999999999776 45566677888999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+++|||+++..+|+.+.. |...+.......+.|+++|+||+|+...+.+...+
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~ 136 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSE 136 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHH
Confidence 999999999999999888 77766654344578999999999997655554443
No 84
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=7.3e-26 Score=152.47 Aligned_cols=123 Identities=24% Similarity=0.371 Sum_probs=97.2
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
+....+.+||+++|.+|+|||||++++.++.+....++.+.+. ..+.+++ +.+.+|||||++.+...+..+++++|
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 3455678999999999999999999999998855556666444 3344444 78999999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++++|+|++++.+++.+.. |...+.......+.|+++|+||+|+.++
T Consensus 91 ~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp EEEEEEETTCTTTHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 9999999999999999888 5555544323467899999999999764
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=7e-26 Score=153.49 Aligned_cols=122 Identities=25% Similarity=0.413 Sum_probs=99.0
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
......+||+++|.+|+|||||++++.++.+ ..+.++.+.++.. +.. ..+.+.+|||||++.+...+..+++.+|
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 3455789999999999999999999999888 4566777765442 332 3568899999999999999999999999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++++|+|++++++++.+.. |...+.......+.|+++|+||+|+..+
T Consensus 93 ~ii~v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKN-ELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp EEEEEEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 9999999999999999888 6555544323467899999999999754
No 86
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.94 E-value=1.2e-25 Score=153.17 Aligned_cols=121 Identities=28% Similarity=0.440 Sum_probs=100.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+|+|||||+++|.++.+ ..+.++.+.++ ......++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4569999999999999999999999887 44556655444 345567888899999999999999988888999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCC
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~ 133 (154)
+|||++++.+++.+.. |...+..... ..+.|+++|+||+|+..
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 9999999999998887 6665555422 24679999999999975
No 87
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.93 E-value=1.2e-26 Score=155.92 Aligned_cols=123 Identities=33% Similarity=0.634 Sum_probs=90.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
...+||+++|.+|+|||||++++.++.+ ..+.++.+..+. ..+..++..+.+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3458999999999999999999999887 344455543332 22345667788999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+|+|++++.+++.+...|...+.... .+.|+++|+||+|+.+++.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~ 129 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQ 129 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcc
Confidence 99999999999999855888887763 4789999999999976654
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.93 E-value=1.3e-25 Score=152.75 Aligned_cols=120 Identities=27% Similarity=0.475 Sum_probs=93.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
..+.+||+++|++|+|||||++++.++.+....|+.+ .....+... .+.+.+|||||++.+...+..+++.+|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3467999999999999999999999888855555555 333344443 478999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+|+|++++++++.+.. |...+.......+.|+++|+||+|+.++
T Consensus 102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 9999999999999887 6666554334567899999999999765
No 89
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.93 E-value=9.4e-26 Score=152.75 Aligned_cols=119 Identities=22% Similarity=0.368 Sum_probs=97.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+.+||+++|++|+|||||++++.++.+....++.+... ..+..+ .+.+.+|||||++.+...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 467999999999999999999999888865666666433 334444 4688999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+|++++++++.... |...+.......+.|+++|+||+|+..+
T Consensus 96 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 96 VVDSTDRDRMGVAKH-ELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp EEETTCCTTHHHHHH-HHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 999999999998887 5555544334467899999999999765
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.93 E-value=1.9e-25 Score=150.80 Aligned_cols=120 Identities=27% Similarity=0.479 Sum_probs=98.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|++|+|||||++++.++....+.++.+.+ ...+.++ .+.+.+|||||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46799999999999999999999988865666766643 3344444 4688999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+|++++.+++.+.. |...+.......+.|+++|+||+|+.++.
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 135 (186)
T 1ksh_A 92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGAL 135 (186)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence 999999999999888 65555443345678999999999997653
No 91
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.93 E-value=3.1e-25 Score=150.40 Aligned_cols=123 Identities=24% Similarity=0.346 Sum_probs=96.3
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCC-C-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDT-F-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (154)
.....+.+||+++|.+|+|||||++++.+.. + ..+.++.+ .....+.+++ +.+.+|||||++.+...+..++++
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence 3445678999999999999999999999887 3 44555555 3444555554 689999999999999999999999
Q ss_pred ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCC--CCCcEEEEEeCCCCCCc
Q 031704 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN--QDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~Dl~~~ 134 (154)
+|++++|+|++++.+++.+.. |...+...... .+.|+++|+||+|+.++
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 999999999999999999888 66555544233 57899999999999754
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.93 E-value=1.1e-25 Score=151.73 Aligned_cols=120 Identities=29% Similarity=0.433 Sum_probs=98.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|++|+|||||++++.+..+..+.++.+.+ ...+..+ .+.+.+|||||++.+...+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45699999999999999999999998775556666643 3344454 4688999999999999988999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+|++++++++.+.. |...+.......+.|+++|+||+|+.++.
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 999999999998887 66555443244678999999999997654
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2.3e-25 Score=150.67 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=94.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|.+|+|||||++++.++.+..+.++.+.+. ..+.+++ +.+.+|||||++.+...+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 356999999999999999999999888765556665433 3344444 789999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+|++++++++.+.. |...+.......+.|+++|+||+|+.++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 999999999999888 7666655433467899999999999753
No 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=3.1e-24 Score=146.62 Aligned_cols=127 Identities=48% Similarity=0.825 Sum_probs=106.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
+..+|++++|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||++|++.++.....+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999887 455677777777888889999999999999999999888888899999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
+|+|+++..+++.+.. |...+... ...+.|+++|+||+|+.+.+.+..
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~ 130 (199)
T 2f9l_A 83 LVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPT 130 (199)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccCcCH
Confidence 9999999999988877 77766654 345679999999999976554433
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=5.5e-25 Score=147.99 Aligned_cols=119 Identities=26% Similarity=0.442 Sum_probs=94.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
.+.+||+++|++|+|||||++++.++.+..+.++.+... ..+.+++ +.+.+|||||++.+...+..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 456999999999999999999999888755566666433 3444443 788999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|+|++++.+++.+.. |...+.......+.|+++|+||+|+.++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 999999999999888 6666655434567899999999999764
No 96
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.92 E-value=2.3e-25 Score=151.90 Aligned_cols=123 Identities=22% Similarity=0.217 Sum_probs=87.8
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeE--EEEEEEC-CeEEEEEEEeCCCcccccccc---cc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALG-GKKMKLAIWDTAGQERFRTLT---SS 80 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~i~D~~g~~~~~~~~---~~ 80 (154)
+.+..+.+||+++|.+|+|||||++++.++.... ++.+.++. .....+. +..+.+.+|||+|++.+.... ..
T Consensus 14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp ------CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 4566788999999999999999999887754333 33333222 2223332 566789999999999987776 78
Q ss_pred cccCccEEEEEEECCCc--chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 81 YYRGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++++|++++|||+++. ++++.+.. |...+.. ...+.|+++|+||+|+..+
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~--~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYK--VNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHH--HCTTCEEEEEEECGGGSCH
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHh--cCCCCcEEEEEeccccCch
Confidence 89999999999999997 55555555 5555543 2457899999999998763
No 97
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=6.5e-24 Score=144.33 Aligned_cols=130 Identities=47% Similarity=0.821 Sum_probs=110.2
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
...+..++++++|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.++
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 3446779999999999999999999999887 567788888888888889999999999999999998888888899999
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL 139 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 139 (154)
++++|+|+++..+++.+.. |...+... ...+.|+++++||+|+.+.+....
T Consensus 104 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~ 154 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPT 154 (191)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCH
Confidence 9999999999999888777 77766554 345679999999999976554433
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.92 E-value=2.6e-25 Score=150.28 Aligned_cols=122 Identities=25% Similarity=0.434 Sum_probs=91.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--CC-CCCCCcceeeeEEEEEEE---CCeEEEEEEEeCCCcccccccccccccCcc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVAL---GGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 86 (154)
.+||+++|++|||||||++++.+. .+ ..+.++.+.++....+.. ++..+.+.+|||+|++.+......+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 34 345667666655544433 345678999999999999988888899999
Q ss_pred EEEEEEECCCc-chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 87 GIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 87 ~~v~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
++++|||++++ .+++.+.. |...+... ..+.|+++|+||+|+.+++.+
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~--~~~~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKP-WLFNIKAR--ASSSPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHH-HHHHHHHH--CTTCEEEEEEECGGGCCHHHH
T ss_pred EEEEEEeCCcchhHHHHHHH-HHHHHHhh--CCCCcEEEEEECCCcccchhh
Confidence 99999999997 47888877 88877664 246899999999999876654
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.91 E-value=6.6e-24 Score=154.88 Aligned_cols=120 Identities=29% Similarity=0.545 Sum_probs=102.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
..+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 458999999999999999999999888 45555555444 4566778899999999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|||++++.+++.+...|...+.... .+.|+++|+||+|+...
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD 274 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTC
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccc
Confidence 9999999999998865888887753 37899999999999654
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.91 E-value=3.5e-24 Score=147.68 Aligned_cols=123 Identities=17% Similarity=0.234 Sum_probs=94.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCccEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFRT-LTSSYYRGAQGI 88 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~ 88 (154)
.+.+||+++|++|+|||||+++++++.+....++.+..... +.+++. .+.+.+|||||++.+.. ++..+++.+|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 45689999999999999999999999885555555444433 555544 67899999999999887 778889999999
Q ss_pred EEEEECCCcc-hHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCch
Q 031704 89 IMVYDVTRRD-TFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 89 v~v~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++|+|+++.. ++......|...+... ....+.|+++|+||+|+..++
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 9999999854 4666666566665542 234578999999999997654
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.91 E-value=5.3e-24 Score=154.65 Aligned_cols=118 Identities=30% Similarity=0.459 Sum_probs=92.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--C--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-----RTLTSSYY 82 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 82 (154)
..+||+++|.+|+|||||+++++++.. . .+.+|.+..+ ..+.+++ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 358999999999999999999998743 2 3334444433 3444444 578999999999988 67788889
Q ss_pred cCccEEEEEEECCCcchHHHHHHHHHHHHhhhc-CCCCCcEEEEEeCCCCCC
Q 031704 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~Dl~~ 133 (154)
+++|++++|||++++.+++.+.. |...+.... ...+.|+++|+||+|+..
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 99999999999999999998876 654443321 145789999999999987
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.85 E-value=2.5e-26 Score=157.44 Aligned_cols=122 Identities=30% Similarity=0.535 Sum_probs=100.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
.+.+||+++|.+|+|||||++++.++.+ ..+.++.+..+ ...+..++..+.+.+|||||++.+...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998887 34445544333 344556777888999999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+|+|++++.+++.+...|...+.... .+.|+++|+||+|+.+.+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDK 150 (204)
Confidence 99999999999988755887776642 378999999999997543
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.91 E-value=4.2e-24 Score=156.51 Aligned_cols=120 Identities=25% Similarity=0.473 Sum_probs=92.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|.+|+|||||++++.++.+....++.+.... .+.. ..+.+.+|||||++.+..++..+++.+|++++
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 3567999999999999999999999888554555554332 3333 34689999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|||++++.+++.+...|...+... ...+.|++||+||+|+.++.
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~ 282 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAM 282 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCC
T ss_pred EEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCccc
Confidence 999999999999888444444433 45688999999999997654
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.91 E-value=2e-23 Score=160.29 Aligned_cols=119 Identities=29% Similarity=0.494 Sum_probs=99.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
...+||+++|.+|+|||||+++|.++.+....++.+.+.. .+.. ..+.+.+|||+|++.+...+..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999999998767777765443 3333 44689999999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
|||++++.+++.+.. |...+.......+.|++||+||+|+...
T Consensus 396 V~D~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 396 VVDCADRDRIDEARQ-ELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred EEECcchhHHHHHHH-HHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 999999999999988 5555544334568899999999999754
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.90 E-value=6.3e-23 Score=137.21 Aligned_cols=116 Identities=20% Similarity=0.217 Sum_probs=87.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v 89 (154)
.+.++|+++|++|+|||||++++.+..+ ....++.+.+.....+..++. .+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4568999999999999999999999887 344454444444455566664 5679999999999999999999999999
Q ss_pred EEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+|+|+++......... ...+ ...+.|+++|+||+|+.+.
T Consensus 84 ~v~d~~~~~~~~~~~~--l~~~----~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 84 LVVAADDGVMPQTVEA--INHA----KAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp EEEETTCCCCHHHHHH--HHHH----GGGSCCEEEEEETTTSSCS
T ss_pred EEEECCCCCcHHHHHH--HHHH----HhCCCCEEEEEECccCCcC
Confidence 9999988543322221 1222 2347899999999999764
No 106
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.90 E-value=1.6e-22 Score=133.06 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=87.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRG 84 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 84 (154)
+||+++|++|+|||||++++.+..+. ...+..+.+.....+..++. .+.+|||||... +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999998753 33333333445555556554 678999999876 33445567889
Q ss_pred ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 85 ~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
+|++++|+|+++..+... ..+.+.+.. .+.|+++|+||+|+.+++ ....++..++...++++|
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~S 142 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE-LYLGPLYGLGFGDPIPTS 142 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG-GGCGGGGGGSSCSCEECB
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch-HhHHHHHhCCCCCeEEEe
Confidence 999999999998644432 212333333 368999999999997653 233333344444556655
No 107
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.89 E-value=3.4e-24 Score=151.95 Aligned_cols=129 Identities=19% Similarity=0.246 Sum_probs=90.3
Q ss_pred CCCceeEEEEEEcCC---------CCCHHHHHHHHhcC---CC-CCCCCcc-eeeeEEE--------------EEEECCe
Q 031704 8 QEFDYLFKLLLIGDS---------GVGKSTLLLSFTSD---TF-EELSPTI-GVDFKIK--------------HVALGGK 59 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~---------~~GKstli~~l~~~---~~-~~~~~~~-~~~~~~~--------------~~~~~~~ 59 (154)
......+||+++|.+ |+|||||+++|.++ .+ ..+.++. +.++... ...+++.
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 93 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV 93 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence 345677999999999 99999999999984 44 3444443 2221111 1124567
Q ss_pred EEEEEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEECC
Q 031704 60 KMKLAIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIIMVYDVT 95 (154)
Q Consensus 60 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~v~v~d~~ 95 (154)
.+.+.+|| ++|++.+..++..+++ ++|++++|||++
T Consensus 94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t 173 (255)
T 3c5h_A 94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS 173 (255)
T ss_dssp --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence 78999999 6667777777777776 799999999999
Q ss_pred Cc--chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 96 RR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 96 ~~--~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
++ .+++.+.. |...+.......+.|+++|+||+|+..++.+
T Consensus 174 ~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v 216 (255)
T 3c5h_A 174 RGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI 216 (255)
T ss_dssp C----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH
T ss_pred CCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH
Confidence 98 89999887 8877765433457899999999999776655
No 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=2e-23 Score=144.23 Aligned_cols=118 Identities=21% Similarity=0.325 Sum_probs=91.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC-
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG- 84 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 84 (154)
....++|+++|++|+|||||++++.+..+.. ..++.+..+ ..+.+.+|||||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4466899999999999999999999988633 333333222 34578999999999998888888877
Q ss_pred ---ccEEEEEEECC-CcchHHHHHHHHHHHHhhhc---CCCCCcEEEEEeCCCCCCchhh
Q 031704 85 ---AQGIIMVYDVT-RRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 85 ---~~~~v~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+|++++|+|++ +++++..... |+..+.... ...+.|+++|+||+|+..++.+
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cccCCEEEEEEECCCChHHHHHHHH-HHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 89999999999 8888888887 554444321 2357899999999999876543
No 109
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.88 E-value=1.4e-22 Score=147.26 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=88.7
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccccc----------
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFR---------- 75 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~---------- 75 (154)
++....-.|+++|.+|+|||||+|+|++.++....+..+.+ ........+ ....+.+|||||.....
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence 44556689999999999999999999999875444333333 222333332 14678899999986544
Q ss_pred ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
.....+++.+|++++|+|+++..+...... |.+.+.. .+.|+++|+||+|+..
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSS
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCC
Confidence 455667889999999999999888777655 6777665 3689999999999973
No 110
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.88 E-value=2.9e-23 Score=150.84 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=83.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc---cccccccCccE
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT---LTSSYYRGAQG 87 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~ 87 (154)
||+++|..|+|||||++++..+..+. ..++.+.++.. ++ ..+++++|||+|+++|.. ....+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887664432 45666665543 22 347899999999999964 35788999999
Q ss_pred EEEEEECCCcchHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCCCc
Q 031704 88 IIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 88 ~v~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+++|||++++ .++.... |.+.+... ...++.|+++||||+|+..+
T Consensus 76 ~IlV~Ditd~-~~~~~~~-l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITN-LAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp EEEECCCSSC-TTHHHHH-HHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred EEEEEECCch-HHHHHHH-HHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 9999999997 3333333 43333221 12457899999999999865
No 111
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.88 E-value=2.2e-22 Score=136.59 Aligned_cols=120 Identities=17% Similarity=0.247 Sum_probs=83.3
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRTL 77 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 77 (154)
+....++|+++|.+|+|||||+++++++.+ ....++.+.+.....+..++ .+.+||||| ++.+...
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 445679999999999999999999999885 55556666555555555554 589999999 6666666
Q ss_pred ccccccCc---cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 78 TSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 78 ~~~~~~~~---~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+..+++.+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+.+++++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~ 152 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKW 152 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGH
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHH
Confidence 66766666 9999999999887776542 2223322 46799999999999877654
No 112
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.88 E-value=3.7e-22 Score=132.52 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=80.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------ccccccc--
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYYR-- 83 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-- 83 (154)
.++|+++|++|+|||||++++.+..+ ....++.+.+.....+..++ ..+.+|||||++.+.. +...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998776 33344444444445555554 4789999999887652 2344554
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++|++++|+|+++.++ ... |...+.. .+.|+++|+||+|+..++.
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~ 125 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLY-LTLQLME----MGANLLLALNKMDLAKSLG 125 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHH-HHHHHHH----TTCCEEEEEECHHHHHHTT
T ss_pred CCCEEEEEecCCchhH---hHH-HHHHHHh----cCCCEEEEEEchHhccccC
Confidence 7999999999988543 233 5555544 2689999999999965443
No 113
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.9e-23 Score=140.76 Aligned_cols=118 Identities=20% Similarity=0.282 Sum_probs=87.5
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCCCC----CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC-
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL----SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG- 84 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~- 84 (154)
....++|+++|++|+|||||++++.+..+... .++.+. +...+.+.+|||||++.+...+..+++.
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 34668999999999999999999999876321 122211 1134578899999999888877777765
Q ss_pred ---ccEEEEEEECC-CcchHHHHHHHHHHHHhhhc---CCCCCcEEEEEeCCCCCCchhh
Q 031704 85 ---AQGIIMVYDVT-RRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 85 ---~~~~v~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+|++++|+|++ +..++..... |...+.... ...+.|+++|+||+|+..++.+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAE-FLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHH-HHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cccCCEEEEEEECCCCchhHHHHHH-HHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 89999999999 8888888877 554443321 2357899999999999876544
No 114
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.87 E-value=8.3e-22 Score=142.70 Aligned_cols=120 Identities=21% Similarity=0.227 Sum_probs=83.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSS 80 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~ 80 (154)
.+..+|+++|.+|+|||||+|++++.++.... +.++.......... ....+.+|||||... +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 35578999999999999999999998874322 22222222222222 345789999999765 3445566
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+++.+|++++|+|+++..+... ..+.+.+... ..+.|+++|+||+|+..++.
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~ 134 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPE 134 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHH
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchH
Confidence 7899999999999998655432 3123445443 24689999999999986655
No 115
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.87 E-value=1e-21 Score=136.81 Aligned_cols=123 Identities=18% Similarity=0.090 Sum_probs=80.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSS 80 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 80 (154)
...+||+++|.+|+|||||+++|++..+. ...+..+.+.....+...+ +.+.+|||||..... ..+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 45699999999999999999999998873 2223333333333333333 578999999983211 11233
Q ss_pred cccCccEEEEEEECCCcchHHHHH-HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLA-DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+++.+|++++|+|++++.+++... ..|...+... ..+.|+++|+||+|+...+.+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~ 160 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSL 160 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CC
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhh
Confidence 467889999999999987765221 1245554432 247899999999999876554
No 116
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.87 E-value=8e-22 Score=131.89 Aligned_cols=117 Identities=22% Similarity=0.186 Sum_probs=85.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY 81 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (154)
...||+++|.+|+|||||++++.+.... ...+..+.++....+.+++. .+.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 3479999999999999999999987652 33344444555666777764 4789999998653221 1235
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
++.+|++++|+|+++..+++. .. |...+... ...+.|+++|+||+|+..
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~-~~~~~~~~-~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AE-IWPEFIAR-LPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HH-HCHHHHHH-SCTTCCEEEEEECHHHHC
T ss_pred HHhCCEEEEEEECCCCCCHHH-HH-HHHHHHHh-cccCCCEEEEEECccCCc
Confidence 789999999999999888763 34 66666554 345789999999999954
No 117
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.86 E-value=1.4e-22 Score=136.89 Aligned_cols=116 Identities=24% Similarity=0.333 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG-----------QERFRTLTSSY 81 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 81 (154)
+||+++|++|+|||||++++.+..+ ....++.+ .....+... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT--RKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT--TSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc--ceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999887 33344333 223333333 688999999 56666677777
Q ss_pred ccC-ccEEEEEEECCCcchHHHHHHHHHHH--------HhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 82 YRG-AQGIIMVYDVTRRDTFTNLADIWAKE--------IDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 82 ~~~-~~~~v~v~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++. ++++++|+++.+..+++.+...|... +.......+.|+++|+||+|+..++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV 138 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH
Confidence 776 78777788887888887775556542 2222234578999999999998765
No 118
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.86 E-value=1e-21 Score=149.83 Aligned_cols=137 Identities=17% Similarity=0.090 Sum_probs=80.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY 81 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (154)
..+||+++|.+|+|||||+|+|++.+. ....+.++.+.....+.+++ +.+.+|||||...+... ...+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 358999999999999999999999864 33344444444445556655 46899999998765533 2446
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
++.+|++++|+|++++.+++.+.. +...+... .+.|+++|+||+|+.........++...+...++++|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vS 378 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALIRAIADGTGTEVIGIS 378 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECB
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEE
Confidence 789999999999999888765433 44444433 2689999999999987766544334333233445554
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.86 E-value=2.5e-21 Score=131.02 Aligned_cols=119 Identities=21% Similarity=0.206 Sum_probs=85.3
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRTL 77 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 77 (154)
.+....+||+++|.+|+|||||++++++.......++.+.+........+. .+.+||||| ++.+...
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 344566899999999999999999999998766666666555555444443 477999999 5556666
Q ss_pred ccccccCc---cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 78 TSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 78 ~~~~~~~~---~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+..+++.+ |++++|+|+++..+..... +...+... +.|+++|+||+|+.++.
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~----~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL----NIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT----TCCEEEEEECGGGSCGG
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc----CCCEEEEEEChhcCChH
Confidence 66666554 9999999998765443321 22233322 68999999999997554
No 120
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.86 E-value=2e-21 Score=131.06 Aligned_cols=115 Identities=21% Similarity=0.243 Sum_probs=84.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR- 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 83 (154)
+.+||+++|++|+|||||++++.+..+ ....++.+.+.....+..++ ..+.+|||||++.+. .....+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998765 34445555555555566654 678999999988764 23444554
Q ss_pred -CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 84 -GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 84 -~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.+|++++|+|.++ ++.... |...+.. .+.|+++|+||+|+...+.
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~-~~~~~~~----~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLY-LTLQLME----MGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHH-HHHHHHT----TTCCEEEEEECHHHHHHTT
T ss_pred cCCCEEEEEecchh---HHHHHH-HHHHHHh----cCCCEEEEEEhhhcccccc
Confidence 4899999999876 344444 6555543 4689999999999965443
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=9.4e-22 Score=139.46 Aligned_cols=112 Identities=21% Similarity=0.183 Sum_probs=83.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT----------LTSSYY 82 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 82 (154)
.+|+++|.+|+|||||+|+|.+... ....+..+.+.....+..++. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999999876 444455555566666666664 788999999877654 344555
Q ss_pred --cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 83 --RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 83 --~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+++|++++|+|+++.++...+. ..+.. .+.|+++|+||+|+...+
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~~----~~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT----SQLFE----LGKPVVVALNMMDIAEHR 126 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH----HHHTT----SCSCEEEEEECHHHHHHT
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH----HHHHH----cCCCEEEEEEChhcCCcC
Confidence 7899999999999865544332 23333 378999999999996544
No 122
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=3.6e-22 Score=151.24 Aligned_cols=134 Identities=19% Similarity=0.168 Sum_probs=85.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccCc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSYYRGA 85 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~ 85 (154)
++|+++|.+|+|||||+|+|.+.+.....++.|.+..............+.+|||||.+ .+......+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999998875556666665555544444444578999999975 4556667778999
Q ss_pred cEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 86 ~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
|++++|+|+.++.+.... . +.+.++ ..+.|+++|+||+|+...+ ....+++++++.+++++|
T Consensus 84 d~il~vvD~~~~~~~~d~-~-~~~~l~----~~~~pvilv~NK~D~~~~~-~~~~~~~~lg~~~~~~iS 145 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADE-E-VAKILY----RTKKPVVLAVNKLDNTEMR-ANIYDFYSLGFGEPYPIS 145 (436)
T ss_dssp SEEEEEEETTTCSCHHHH-H-HHHHHT----TCCSCEEEEEECCCC------CCCSSGGGSSCCCEECB
T ss_pred CEEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCccch-hhHHHHHHcCCCCeEEEe
Confidence 999999999987665432 1 333333 3578999999999997543 234456667777778776
No 123
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.85 E-value=2.8e-21 Score=137.44 Aligned_cols=123 Identities=20% Similarity=0.202 Sum_probs=84.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR----- 83 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 83 (154)
...++|+++|.+|+|||||+|++++....... +..+.......+..++ ..+.+|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 35799999999999999999999998863222 2222333334444444 47899999999877665444443
Q ss_pred ----CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCC-CCCcEEEEEeCCCCCCchh
Q 031704 84 ----GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN-QDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 84 ----~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~ivv~nK~Dl~~~~~ 136 (154)
++|++++|++++... +......|.+.+...... ...|+++|+||+|+..++.
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~ 168 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE 168 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence 789999999987654 443333366666654222 2348999999999965543
No 124
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.85 E-value=5.2e-21 Score=135.78 Aligned_cols=117 Identities=19% Similarity=0.161 Sum_probs=83.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc------cccc-
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT------SSYY- 82 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~- 82 (154)
.+.++|+++|++|+|||||+|+|.+..+ ....+..+.......+... ...+.+|||||...+.... ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 3568999999999999999999998776 3334443333333344433 3689999999988776532 4444
Q ss_pred -cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 83 -RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 83 -~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
..+|++++|+|+++.++... |...+.. .+.|+++|+||+|+...+.+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~~----~~~~l~~----~~~pvilv~NK~Dl~~~~~i 128 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSLY----LLLEILE----MEKKVILAMTAIDEAKKTGM 128 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHHH----HHHHHHT----TTCCEEEEEECHHHHHHTTC
T ss_pred hcCCCEEEEEeCCCchhhHHH----HHHHHHh----cCCCEEEEEECcCCCCccch
Confidence 57999999999998765432 4445443 37899999999999654433
No 125
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.85 E-value=2e-21 Score=150.53 Aligned_cols=126 Identities=23% Similarity=0.338 Sum_probs=91.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEE------EEE--CCeEEEEEEEeCCCcccccccccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKH------VAL--GGKKMKLAIWDTAGQERFRTLTSS 80 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~~ 80 (154)
....+||+++|.+|+|||||++++.+..+ ....++.+.++.... +.+ ++..+.+.+||+||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 45679999999999999999999999887 556677776665442 111 234578999999999999999999
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhh
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSG 141 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~ 141 (154)
+++++|++++|+|+++.+. ... |...+.... .+.|+++|+||+|+...+.+...+
T Consensus 118 ~l~~~d~ii~V~D~s~~~~---~~~-~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~ 172 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSN---KHY-WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKK 172 (535)
T ss_dssp HHHSSEEEEEEECGGGGGG---HHH-HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHH
T ss_pred HccCCcEEEEEEeCCCchh---HHH-HHHHHHHhC--CCCCEEEEEECCCcccccccCHHH
Confidence 9999999999999987643 344 777877762 368999999999998766654433
No 126
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=1.3e-21 Score=148.28 Aligned_cols=133 Identities=22% Similarity=0.219 Sum_probs=86.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSYY 82 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 82 (154)
.+|+++|.+|+|||||+|+|++++.. ...+..+.+.....+..++. .+.+|||||.+. +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 48999999999999999999988753 33333333344455566665 478899999654 233456678
Q ss_pred cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh-hhhhhhhhccccccC
Q 031704 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL-SGFWHFLLSKFYCSS 154 (154)
Q Consensus 83 ~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~S 154 (154)
+.+|++++|+|+++..+.... . +...++. .+.|+++|+||+|+........ .+++++++.+++++|
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~-~-i~~~l~~----~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iS 146 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE-S-LADFLRK----STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVS 146 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH-H-HHHHHHH----HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECB
T ss_pred HhCCEEEEEEECCCCCCHHHH-H-HHHHHHH----cCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEe
Confidence 999999999999886554331 1 2223333 2678999999999964322233 556666776778776
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.85 E-value=1.5e-21 Score=135.13 Aligned_cols=123 Identities=20% Similarity=0.147 Sum_probs=84.7
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCc----------ccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQ----------ERFRT 76 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~~~~ 76 (154)
+....++|+++|.+|+|||||+|+|++... .......+.+......... .....+.+|||||. +.+..
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 345678999999999999999999999873 3444444444444444444 34467889999994 33344
Q ss_pred cccccccC---ccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 77 LTSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 77 ~~~~~~~~---~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
....+++. +|++++|+|+++..+... .. |...+.. .+.|+++|+||+|+..++..
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~-~~~~l~~----~~~p~i~v~nK~Dl~~~~~~ 162 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELD-RR-MIEWFAP----TGKPIHSLLTKCDKLTRQES 162 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HH-HHHHHGG----GCCCEEEEEECGGGSCHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HH-HHHHHHh----cCCCEEEEEeccccCChhhH
Confidence 44455554 789999999987544221 22 4455544 46899999999999876553
No 128
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.84 E-value=3.7e-21 Score=137.64 Aligned_cols=114 Identities=18% Similarity=0.146 Sum_probs=81.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------cccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------TSSY 81 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~ 81 (154)
.++|+++|.+|+|||||+|+|++... ....+..+.+.....+...+ ..+.+|||||...+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 48999999999999999999999876 33444444445555555544 36788999998776631 2222
Q ss_pred --ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 82 --YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 82 --~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.+.+|++++|+|+++.++... |...+... +.|+++|+||+|+...+.
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~----~~~~l~~~----~~p~ivv~NK~Dl~~~~~ 129 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLY----LTLQLLEL----GIPCIVALNMLDIAEKQN 129 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHH----HHHHHHHH----TCCEEEEEECHHHHHHTT
T ss_pred HhhcCCCEEEEEecCCChHHHHH----HHHHHHhc----CCCEEEEEECccchhhhh
Confidence 268999999999998654433 33344443 689999999999965443
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=1.8e-21 Score=148.20 Aligned_cols=136 Identities=19% Similarity=0.145 Sum_probs=89.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC--------ccccccccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG--------QERFRTLTSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~~ 83 (154)
..++|+++|.+|+|||||+|+|++.+.....++.+.+..............+.+||||| ++.+......+++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 101 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 101 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh
Confidence 45799999999999999999999988765566667666666666655556899999999 6666777778889
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhhhhhhhhhccccccC
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLSGFWHFLLSKFYCSS 154 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~S 154 (154)
.+|++++|+|..+..+... ..+.+.++ ..+.|+++|+||+|+...+ ....+++.+++.+++++|
T Consensus 102 ~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~-~~~~e~~~lg~~~~~~iS 165 (456)
T 4dcu_A 102 EADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMR-ANIYDFYSLGFGEPYPIS 165 (456)
T ss_dssp HCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC----------CCSGGGSSSSEEECC
T ss_pred hCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhh-hhHHHHHHcCCCceEEee
Confidence 9999999999876443322 21233333 3578999999999997543 334566677777777776
No 130
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=1.9e-20 Score=133.64 Aligned_cols=126 Identities=19% Similarity=0.134 Sum_probs=83.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc---------c
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS---------Y 81 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---------~ 81 (154)
...++|+++|.+|+|||||+|++++..+....+..+.+.......+......+.+|||||...+...... .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 3579999999999999999999998886333333333322222333333457899999998765533221 1
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCchhh
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.+.+|++++|+|++.. ++......|...+..... ....|+++|+||+|+..++..
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~ 172 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGL 172 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCC
Confidence 3468999999998753 344333336666655422 122699999999999766543
No 131
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=132.65 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCC--cceeeeEEEEEEECCeEEEEEEEeCCCcc-----------c
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSP--TIGVDFKIKHVALGGKKMKLAIWDTAGQE-----------R 73 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~ 73 (154)
.+....+||+++|.+|+|||||+|++++... ....+ +.+..........++. .+.+|||||.. .
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHH
Confidence 3445679999999999999999999999887 33333 2333444445555553 67899999943 3
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhh-hcCCCCCcEEEEEeCCCCCCchhh
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL-YSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+........+.+|++++|+|+++....+. . |...+.. .......|+++|+||+|+...+.+
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~--~-~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~ 163 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEH--K-ATEKILKMFGERARSFMILIFTRKDDLGDTNL 163 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHH--H-HHHHHHHHHHHHHGGGEEEEEECGGGC-----
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHH--H-HHHHHHHHhhhhccceEEEEEeCCccCCcccH
Confidence 33444455677899999999986544221 1 2222222 111124589999999999765543
No 132
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.83 E-value=3.7e-21 Score=137.45 Aligned_cols=112 Identities=21% Similarity=0.195 Sum_probs=81.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR-- 83 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 83 (154)
.++|+++|++|+|||||+|+|.+... ....+ |.+.......+.. ...+.+|||||...+. .....++.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 58999999999999999999998764 33334 3334334444554 5678999999988775 23455554
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++|++++|+|+++.++.. . |...+.. .+.|+++|+||+|+...+
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~-~~~~l~~----~~~p~ilv~NK~Dl~~~~ 123 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---Y-LTTQLIE----TGIPVTIALNMIDVLDGQ 123 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---H-HHHHHHH----TCSCEEEEEECHHHHHHT
T ss_pred CCCEEEEEecCCchHhHH---H-HHHHHHh----cCCCEEEEEEChhhCCcC
Confidence 699999999998865432 2 5445544 378999999999986443
No 133
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.83 E-value=1.6e-20 Score=134.08 Aligned_cols=114 Identities=21% Similarity=0.152 Sum_probs=82.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--c
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--R 83 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~ 83 (154)
.+||+++|++|+|||||+|++.+... ....+..+.+.....+..++. .+.+|||||...+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 47999999999999999999998876 344455555555556666554 488999999887665 344444 6
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
++|++++|+|+++.+. ... |...+... ...|+++|+||+|+...+
T Consensus 81 ~~d~vi~v~D~~~~~~---~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 81 NADVIVDIVDSTCLMR---NLF-LTLELFEM---EVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp CCSEEEEEEEGGGHHH---HHH-HHHHHHHT---TCCSEEEEEECHHHHHHH
T ss_pred CCcEEEEEecCCcchh---hHH-HHHHHHhc---CCCCEEEEEEChhcCccc
Confidence 7999999999988532 223 33333332 238999999999986544
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.82 E-value=1.7e-20 Score=141.19 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------cc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------TS 79 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~ 79 (154)
+....+||+++|..++|||||++++++..+. ...+.++.+.....+...+.. .+.+|||||++.+... ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 4456799999999999999999999998863 233333444445555555442 7899999999877654 23
Q ss_pred ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 80 ~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.+++++|++++|+|+.... .... |...+... +.|+++|+||+|+..++..
T Consensus 109 ~~l~~aD~vllVvD~~~~~---~~~~-~l~~l~~~----~~piIvV~NK~Dl~~~~~~ 158 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTP---YEDD-VVNLFKEM----EIPFVVVVNKIDVLGEKAE 158 (423)
T ss_dssp HHHTSCSEEEEECSSSCCH---HHHH-HHHHHHHT----TCCEEEECCCCTTTTCCCT
T ss_pred HHHhcCCEEEEEEeCCChH---HHHH-HHHHHHhc----CCCEEEEEeCcCCCCccHH
Confidence 4688899999999983322 2223 66666654 7899999999999876654
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=2.5e-20 Score=141.17 Aligned_cols=119 Identities=20% Similarity=0.154 Sum_probs=83.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCc----------ccccccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ----------ERFRTLT 78 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~ 78 (154)
+..+||+++|.+|+|||||+|++++.... ...+.++.+.....+..++. .+.+|||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 35699999999999999999999998762 33343333444445556665 4889999997 3333332
Q ss_pred c-ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 79 S-SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 79 ~-~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
. .+++.+|++++|+|++++.+++.. . |...+.. .+.|+++|+||+|+.+.+..
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~~ 304 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-R-IAGYAHE----AGKAVVIVVNKWDAVDKDES 304 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCEEEEEEECGGGSCCCTT
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-H-HHHHHHH----cCCcEEEEEECccCCCcchH
Confidence 2 467889999999999998887665 3 5555543 46899999999999876554
No 136
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.81 E-value=4.7e-20 Score=130.10 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=74.7
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCccee--eeEEEEEEECCeEEEEEEEeCCCc--------cccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGV--DFKIKHVALGGKKMKLAIWDTAGQ--------ERFRTL 77 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~ 77 (154)
.....+||+++|.+|+|||||+|++++.... ...+..+. .........++ ..+.+|||||. +.+...
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~ 94 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEE 94 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHH
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHH
Confidence 3456799999999999999999999998873 22222222 23333444444 46889999995 222222
Q ss_pred ccccc----cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC--CCCCcEEEEEeCCCCCCc
Q 031704 78 TSSYY----RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 78 ~~~~~----~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~Dl~~~ 134 (154)
...++ +.+|++++|+|+++....+. . +.+.+..... ..+.|++|++||+|+.+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~--~-~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 95 RGHCYLLSAPGPHALLLVTQLGRFTAQDQ--Q-AVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTBCCHHHH--H-HHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHhcCCCCCEEEEEEeCCCCCHHHH--H-HHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 22333 88999999999986332221 1 2333333212 236799999999999653
No 137
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.81 E-value=2.5e-20 Score=142.75 Aligned_cols=123 Identities=17% Similarity=0.101 Sum_probs=82.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------------------CCCCcceeeeEEEEEEECCeE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALGGKK 60 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (154)
...+||+++|.+++|||||+++|+..... ......|++.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 35699999999999999999999765210 001112334444444444556
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHH------HHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN------LADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+.+.+|||||+++|...+..+++.+|++++|+|+++..++.. ... ....+... ...|+++|+||+|+.+.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~~~---~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASSL---GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHHHT---TCCCEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHHHc---CCCcEEEEEECcCcccc
Confidence 789999999999999999999999999999999998654322 111 12222221 23469999999999874
Q ss_pred hhh
Q 031704 135 WRL 137 (154)
Q Consensus 135 ~~~ 137 (154)
++.
T Consensus 187 ~~~ 189 (483)
T 3p26_A 187 SQQ 189 (483)
T ss_dssp CHH
T ss_pred hHH
Confidence 433
No 138
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.81 E-value=1.9e-19 Score=130.37 Aligned_cols=134 Identities=21% Similarity=0.137 Sum_probs=85.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC--CCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------cccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTSS 80 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~ 80 (154)
+..+|+++|++|+|||||+|++++.+.... .+.++.......+..+ ...+.+|||||.. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 456899999999999999999999876322 2222112222223333 3578899999987 34455567
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhh---hhhhh-hhhccccccC
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFL---SGFWH-FLLSKFYCSS 154 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~---~~~~~-~~~~~~~~~S 154 (154)
+++.+|++++|+|+++ -+ .......+.+. ..+.|+++++||+|+...+.... .++.. +++..++|+|
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEE
Confidence 7899999999999977 22 22221222222 34689999999999986333222 22222 2334567776
No 139
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.81 E-value=1.9e-19 Score=135.09 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=87.4
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEE-------EE---------EE---CCeEEEEEEEeCC
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK-------HV---------AL---GGKKMKLAIWDTA 69 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~i~D~~ 69 (154)
.....+||+++|.+++|||||+++|++............+.... .+ .. ......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34456899999999999999999999854422111111000000 00 00 1123689999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|++.+...+...++.+|++++|+|+++..++..... |...+... ...|+++|+||+|+.++.+
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~ 146 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEE 146 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHH
Confidence 999999999999999999999999998776666666 55555544 2258999999999987654
No 140
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=6.1e-20 Score=134.84 Aligned_cols=119 Identities=21% Similarity=0.197 Sum_probs=86.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccccccc---cCcc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSYY---RGAQ 86 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~---~~~~ 86 (154)
+|+++|.++||||||++++.+.+. ...++.++.......+.+++ ...+.+|||||..+ +..+...++ .+++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 588999999999999999998765 33344344344444555553 23689999999532 333434444 4599
Q ss_pred EEEEEEECCC---cchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCch
Q 031704 87 GIIMVYDVTR---RDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 87 ~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~~ 135 (154)
++++|+|+++ +++++.+.. |...+..+.. ..+.|+++|+||+|+..++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~ 290 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA 290 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH
T ss_pred EEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH
Confidence 9999999998 788888877 8878777532 3578999999999998654
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.80 E-value=4.8e-19 Score=134.17 Aligned_cols=120 Identities=17% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC--CC----------------------------CCCcceeeeEEEEEEECC
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE----------------------------LSPTIGVDFKIKHVALGG 58 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~ 58 (154)
+....++|+++|.+++|||||+++|+...- .. .....|.+.......+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 445679999999999999999999965421 00 001123444444444444
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HH---HHHHHHHHHHhhhcCCCCCc-EEEEEeCCCC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDCI-KLLVGNKVDK 131 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl 131 (154)
....+.+|||||+++|...+...++.+|++++|+|+++... ++ .... ....+.. .+.| +++++||+|+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~~----~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKT----AGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHHH----cCCCeEEEEeecCCC
Confidence 55689999999999999988889999999999999998642 11 1122 1122222 2455 8999999999
Q ss_pred CC
Q 031704 132 VC 133 (154)
Q Consensus 132 ~~ 133 (154)
..
T Consensus 168 ~~ 169 (439)
T 3j2k_7 168 PT 169 (439)
T ss_pred cc
Confidence 54
No 142
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.4e-19 Score=137.70 Aligned_cols=123 Identities=20% Similarity=0.150 Sum_probs=84.8
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRTL 77 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 77 (154)
....+||+++|.+++|||||+|++++... ....+.++.+.....+..++. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 34578999999999999999999998764 333444444443445556655 688999999 5555554
Q ss_pred cc-ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhhhhh
Q 031704 78 TS-SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRLFLS 140 (154)
Q Consensus 78 ~~-~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~~ 140 (154)
.. .+++.+|++++|+|+++..+... .. |...+.. .+.|+++|+||+|+.+++....+
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~-~~-~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~ 327 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD-KR-IAGYAHE----AGKAVVIVVNKWDAVDKDESTMK 327 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH-HH-HHHHHHH----TTCEEEEEEECGGGSCCCSSHHH
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH-HH-HHHHHHH----cCCCEEEEEEChhcCCCchHHHH
Confidence 43 36788999999999988544222 22 4445444 46899999999999876655433
No 143
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.78 E-value=8.8e-19 Score=125.26 Aligned_cols=121 Identities=22% Similarity=0.310 Sum_probs=75.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCC--------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------c
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EEL--------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------F 74 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~ 74 (154)
...++|+++|.+|+|||||+|++++... ... .++.+.+.....+..++..+.+.+|||||... +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 3569999999999999999999887765 222 34444455555555556667999999999632 2
Q ss_pred cccc-------cccc-------------cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 75 RTLT-------SSYY-------------RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 75 ~~~~-------~~~~-------------~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
..+. ..++ .++|+++++++.+.... ......+.+.+.. ..|+++|+||+|+...
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~-~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGL-KPLDIEFMKRLHE-----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSC-CHHHHHHHHHHTT-----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCC-CHHHHHHHHHHhc-----cCCEEEEEeccCCCCH
Confidence 2111 1112 23789999998765322 2222213334332 7899999999999765
Q ss_pred hhh
Q 031704 135 WRL 137 (154)
Q Consensus 135 ~~~ 137 (154)
.+.
T Consensus 160 ~e~ 162 (274)
T 3t5d_A 160 EEC 162 (274)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 144
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.78 E-value=5.8e-19 Score=137.72 Aligned_cols=118 Identities=24% Similarity=0.252 Sum_probs=81.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--C------------CCCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E------------ELSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQE 72 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~------------~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~ 72 (154)
...||+++|+.++|||||+++|+...- . ......|++.......+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 468999999999999999999986321 0 00112334443322222 5667899999999999
Q ss_pred cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 73 ~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+|...+...++.+|++++|+|+++..+...... |..... .+.|+++|+||+|+..++
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-----~~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-----MDLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEeeeccCccccc
Confidence 999989999999999999999999877666655 655443 367999999999997654
No 145
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.4e-19 Score=141.84 Aligned_cols=124 Identities=19% Similarity=0.123 Sum_probs=81.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCC------------------------------cceeeeEEEEEEECCeE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP------------------------------TIGVDFKIKHVALGGKK 60 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 60 (154)
...+||+++|.+++|||||+++|++........ ..|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 346899999999999999999998764311110 12333332333333345
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+.+.+|||||++.+...+..+++.+|++|+|+|+++... +....+ +.+.+.........|++||+||+|+.+.+
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~q-t~e~l~~~~~lgi~~iIVVvNKiDl~~~~ 321 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ-TKEHMLLASSLGIHNLIIAMNKMDNVDWS 321 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSH-HHHHHHHHHTTTCCEEEEEEECTTTTTTC
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhH-HHHHHHHHHHcCCCeEEEEEecccccchh
Confidence 678999999999999989999999999999999987421 000011 11111111112234699999999998743
No 146
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.78 E-value=4.3e-19 Score=137.01 Aligned_cols=122 Identities=17% Similarity=0.113 Sum_probs=81.9
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC-C--------------------CCCCcceeeeEEEEEEECCeEEEEEEEe
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E--------------------ELSPTIGVDFKIKHVALGGKKMKLAIWD 67 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~-~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D 67 (154)
...+..+|+++|++++|||||+++|+...- . ......+.+.......+....+.+++||
T Consensus 9 ~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liD 88 (529)
T 2h5e_A 9 EVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLD 88 (529)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEEC
T ss_pred hhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEE
Confidence 334679999999999999999999986321 0 0001222222222222222346799999
Q ss_pred CCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|||+..|......+++.+|++++|+|+++..... ... +...+ ...+.|+++|+||+|+.....
T Consensus 89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~-~~~~~----~~~~ipiivviNK~Dl~~~~~ 151 (529)
T 2h5e_A 89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRK-LMEVT----RLRDTPILTFMNKLDRDIRDP 151 (529)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHH-HHHHH----TTTTCCEEEEEECTTSCCSCH
T ss_pred CCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHH-HHHHH----HHcCCCEEEEEcCcCCccccH
Confidence 9999999988888999999999999998864322 222 22222 345789999999999976543
No 147
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.77 E-value=6.3e-18 Score=119.76 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=75.6
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-C-CCCCc-ceeeeEEEEEEECCeEEEEEEEeCCCcccccccc--------
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E-ELSPT-IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT-------- 78 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------- 78 (154)
....++|+++|.+|+|||||++++++... . ...++ .+.+........++ ..+.+|||||...+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 44569999999999999999999998874 2 22333 33334444444544 468899999976553322
Q ss_pred ---cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEe-CCCCCCc
Q 031704 79 ---SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGN-KVDKVCP 134 (154)
Q Consensus 79 ---~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~n-K~Dl~~~ 134 (154)
..+++.+|++++|+|+++....+. . +...+..... ....|.++|+| |+|+...
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~--~-~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGRYTSQDQ--Q-AAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTCCCHHHH--H-HHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHhcCCCCcEEEEEEeCCCCCHHHH--H-HHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 225788999999999986332221 1 2223332211 11345566666 9999754
No 148
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=1.6e-18 Score=135.11 Aligned_cols=119 Identities=24% Similarity=0.290 Sum_probs=84.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC------C------CCcceeeeE----EEEEEE-CCeEEEEEEEeCCCc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE------L------SPTIGVDFK----IKHVAL-GGKKMKLAIWDTAGQ 71 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~--~~~------~------~~~~~~~~~----~~~~~~-~~~~~~~~i~D~~g~ 71 (154)
+...+|+++|+.++|||||+++|+... ... . ....|++.. ...+.. ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999997531 110 0 011222221 112221 556789999999999
Q ss_pred ccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 72 ~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.+|.......++.+|++++|+|+++..+...... |..... .+.|+++|+||+|+..++
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~~-----~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAVE-----QDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHHH-----CCCCEEEEEeccCccccC
Confidence 9999888888999999999999999887766665 654432 368899999999997654
No 149
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.77 E-value=7.6e-18 Score=124.57 Aligned_cols=122 Identities=20% Similarity=0.153 Sum_probs=84.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------cccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT---------LTSS 80 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~ 80 (154)
...++++++|.+|+|||||++++.+... ....+..+.......+... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 3567999999999999999999998875 2222332223333333333 35689999999754221 1122
Q ss_pred cccCccEEEEEEECCCcc--hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 81 YYRGAQGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
....+|++++|+|+++.. +++.... |...+..... +.|+++|+||+|+.....+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~~--~~piilV~NK~Dl~~~~~~ 298 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEFK--DLPFLVVINKIDVADEENI 298 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHTT--TSCEEEEECCTTTCCHHHH
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhcC--CCCEEEEEECcccCChHHH
Confidence 344689999999998876 6666666 7766665422 7899999999999876554
No 150
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.77 E-value=7.4e-19 Score=133.66 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=75.4
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY 81 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (154)
..+||+++|.+|+|||||+|+|++.+. ....+.++.+.....+.+++ ..+.+|||||...+... ...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 458999999999999999999998765 23334443333334455565 45789999997554332 2335
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
++.+|++++|+|++++.+... .. |.+.+. ..|+++|+||+|+......
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~-i~~~l~------~~piivV~NK~Dl~~~~~~ 348 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QE-IYEQVK------HRPLILVMNKIDLVEKQLI 348 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HH-HHHHHT------TSCEEEEEECTTSSCGGGS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HH-HHHhcc------CCcEEEEEECCCCCcchhh
Confidence 788999999999998766544 22 444432 2689999999999766544
No 151
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=6e-18 Score=128.06 Aligned_cols=120 Identities=21% Similarity=0.155 Sum_probs=81.7
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC---CC----------CCCc-------------------ceeeeEEEEEEEC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---EE----------LSPT-------------------IGVDFKIKHVALG 57 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~---~~----------~~~~-------------------~~~~~~~~~~~~~ 57 (154)
....+||+++|..++|||||+++|+.... .. ...+ .+++.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35679999999999999999999986541 00 0011 1222222223333
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.....+.+|||||+++|...+..+++.+|++++|+|+++..... ... |...+... ...|+++|+||+|+.+.
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~-~l~~~~~~---~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRR-HSYIASLL---GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHH-HHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHH-HHHHHHHc---CCCeEEEEEEcCcCCcc
Confidence 34467899999999999888888899999999999999865332 233 33333332 22369999999999863
No 152
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=6.8e-19 Score=134.42 Aligned_cols=112 Identities=25% Similarity=0.240 Sum_probs=83.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------ccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE-RFRT--------LTSSY 81 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 81 (154)
.++|+++|.+|+|||||+|+|.+.+. ....+.++.+.....+.+++. .+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 38999999999999999999998864 344455554555566666654 58899999987 5432 13456
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
++.+|++++|+|++++.+++...- | +.+ .+.|+++|+||+|+..+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~i-l-~~l------~~~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKI-L-ERI------KNKRYLVVINKVDVVEK 365 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHH-H-HHH------TTSSEEEEEEECSSCCC
T ss_pred hhcccEEEEEecCCCCCCHHHHHH-H-HHh------cCCCEEEEEECcccccc
Confidence 788999999999999877765322 2 222 36799999999999754
No 153
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.76 E-value=2.5e-18 Score=128.82 Aligned_cols=116 Identities=18% Similarity=0.117 Sum_probs=82.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC-------CCC--------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDT-------FEE--------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (154)
..+||+++|+.++|||||+++|++.. +.. .....+.+.......+......+.+|||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998741 110 001233444444444444456789999999999888
Q ss_pred cccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCC
Q 031704 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVC 133 (154)
Q Consensus 77 ~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~ 133 (154)
.+...++.+|++++|+|+++....+.... | ..+.. .+.| +++++||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~~----~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ----IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCeEEEEEECcccCC
Confidence 88888999999999999998654333322 3 33333 2567 789999999985
No 154
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.76 E-value=1.1e-18 Score=130.94 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=84.7
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcC--------CCCCC--------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD--------TFEEL--------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
....++|+++|++++|||||+++|.+. .+..+ ....+.+.......+......+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346699999999999999999999873 21111 01233344334444444456789999999999
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCC
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVC 133 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~ 133 (154)
|.......++.+|++++|+|+++.... .... |...+... +.| +++++||+|+..
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~-~l~~~~~~----~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTRE-HILLARQV----GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHH-HHHHHHHT----TCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHH-HHHHHHHc----CCCEEEEEEECccccC
Confidence 988888889999999999999986543 3334 44444432 567 889999999985
No 155
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=2.6e-17 Score=123.64 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=79.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC----CCCCC--cceeeeEEEEEEE-------------C--C----eEEEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSP--TIGVDFKIKHVAL-------------G--G----KKMKLAI 65 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~----~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i 65 (154)
...++|+++|+.++|||||+++|.+... .+..+ +....+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 4569999999999999999999985432 12122 2222233222211 1 1 2378999
Q ss_pred EeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
|||||++.|...+...+..+|++++|+|+++........+ ....+... ...|+++++||+|+.++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~l---~~~~iivv~NK~Dl~~~~~ 152 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKE-HLMALEIL---GIDKIIIVQNKIDLVDEKQ 152 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHH-HHHHHHHT---TCCCEEEEEECTTSSCTTT
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHH-HHHHHHHc---CCCeEEEEEEccCCCCHHH
Confidence 9999999998887777888999999999996431111122 11122222 2347999999999976543
No 156
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.76 E-value=3.8e-19 Score=137.18 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=83.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC------------------CCCC---CCcceeeeEEEEEEECCeEEEEEEEeCC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT------------------FEEL---SPTIGVDFKIKHVALGGKKMKLAIWDTA 69 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 69 (154)
.+..+|+++|.+++|||||+++|+... .... ....+.+.......+....+.+++||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 456899999999999999999997211 1000 0011222222222222234679999999
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+.++......+++.+|++|+|+|+++..+...... |.. +. ..+.|+++|+||+|+....
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~----~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CR----LRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HH----TTTCCEEEEEECTTSCCSC
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----HcCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999998766655443 433 22 2368999999999997544
No 157
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.75 E-value=8.1e-18 Score=127.51 Aligned_cols=118 Identities=25% Similarity=0.230 Sum_probs=77.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------- 77 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------- 77 (154)
...+|++++|++|+|||||+|++++... ....+.++.+.....+.+++. .+.+|||+|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 3468999999999999999999998875 233333333344455666765 5678999997432221
Q ss_pred -ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 78 -TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 78 -~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
...+++.+|++++++|+++..+.... . +...+.. .+.|+++|+||+|+.+.+.
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~-i~~~l~~----~~~~~ilv~NK~Dl~~~~~ 309 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQ-R-MAGLMER----RGRASVVVFNKWDLVVHRE 309 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-H-HHHHHHH----TTCEEEEEEECGGGSTTGG
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHH-H-HHHHHHH----cCCCEEEEEECccCCCchh
Confidence 12346778999999999987665442 1 2233332 4789999999999986554
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=3.5e-19 Score=134.86 Aligned_cols=120 Identities=20% Similarity=0.207 Sum_probs=79.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC--CCCCCC----------------------------CcceeeeEEEEEEECCeEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSD--TFEELS----------------------------PTIGVDFKIKHVALGGKKM 61 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~--~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 61 (154)
..+||+++|..++|||||+++|+.. .+.... ...+.+.......+.....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 5689999999999999999999864 221100 0122333333333444456
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhc---CCCC-CcEEEEEeCCCCCC
Q 031704 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS---TNQD-CIKLLVGNKVDKVC 133 (154)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~-~~~ivv~nK~Dl~~ 133 (154)
.+.+|||||+++|...+..+++.+|++++|+|+++ .+|+.... |..+.+.+. ...+ .++++++||+|+.+
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 79999999999999888889999999999999998 66764433 221111110 1123 46899999999976
No 159
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=127.69 Aligned_cols=123 Identities=25% Similarity=0.371 Sum_probs=69.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCC---------CCcceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EEL---------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ER 73 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 73 (154)
...++|+++|++|+|||||++++++... ... .++.+.......+..++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3568999999999999999999876543 211 133333333333444566778999999998 55
Q ss_pred cccccc-------ccccCccE-----------EEEEEECCC-cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 74 FRTLTS-------SYYRGAQG-----------IIMVYDVTR-RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 74 ~~~~~~-------~~~~~~~~-----------~v~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+..+.. .+++.+++ .+++|++++ ..++..+...|...+ ..+.|+++|+||+|+..+
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCH
Confidence 665554 44443322 234444443 344555443344433 256899999999999877
Q ss_pred hhhh
Q 031704 135 WRLF 138 (154)
Q Consensus 135 ~~~~ 138 (154)
+++.
T Consensus 190 ~ev~ 193 (361)
T 2qag_A 190 KERE 193 (361)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 160
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.75 E-value=1.3e-18 Score=132.63 Aligned_cols=122 Identities=18% Similarity=0.158 Sum_probs=66.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC----------------------C------CCcceeeeEEEEEEECCe
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE----------------------L------SPTIGVDFKIKHVALGGK 59 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~--~~~----------------------~------~~~~~~~~~~~~~~~~~~ 59 (154)
....++|+++|+.++|||||+++|+... +.. . ....+.|.......+...
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 3567999999999999999999997421 100 0 001222222222122222
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc---hHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCC
Q 031704 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVC 133 (154)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~ 133 (154)
...+.+|||||+++|...+...++.+|++++|+|+++.. +|+...+ |.+.+... ...+.| +++++||+|+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~~-~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVLA-RTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHHH-HHTTCSSEEEEEECTTSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHHH-HHcCCCEEEEEEECccCCC
Confidence 357899999999999988888899999999999999863 2221111 22222211 123565 999999999964
No 161
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.75 E-value=1.5e-17 Score=125.01 Aligned_cols=124 Identities=18% Similarity=0.162 Sum_probs=81.7
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCCC---C-CCCC--cceeeeEEEEEEE-------------C--C----eEEEE
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF---E-ELSP--TIGVDFKIKHVAL-------------G--G----KKMKL 63 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~~---~-~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 63 (154)
.....++|+++|+.++|||||+++|.+... . +..+ +....+....+.. + + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 345779999999999999999999985432 1 1112 2222232222211 0 1 13689
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 64 ~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.+|||||++.|.......+..+|++++|+|+++........+ ....+... ...|+++|+||+|+.++..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e-~l~~~~~~---~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTRE-HLMALQII---GQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHH-HHHHHHHc---CCCcEEEEEECccCCCHHH
Confidence 999999999988877777888999999999996431112222 11122222 2357999999999987653
No 162
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.75 E-value=7.2e-20 Score=141.07 Aligned_cols=117 Identities=18% Similarity=0.138 Sum_probs=84.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~ 90 (154)
+.++|+++|++++|||||+++|.+..+ ....++.+.+.....+..+ ....+.+|||||++.|..++..+++.+|++++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 347899999999999999999997766 2333333322222222221 12368899999999999999999999999999
Q ss_pred EEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|+|+++......... | ..+ ...+.|+++++||+|+.+..
T Consensus 82 VVDa~dg~~~qt~e~-l-~~~----~~~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 82 VVAADDGVMKQTVES-I-QHA----KDAHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp ECBSSSCCCHHHHHH-H-HHH----HTTTCCEEECCBSGGGTTTS
T ss_pred EEECCCCccHHHHHH-H-HHH----HHcCCcEEEEEecccccccc
Confidence 999998665544333 2 222 23467999999999997543
No 163
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.75 E-value=1.3e-17 Score=127.67 Aligned_cols=119 Identities=17% Similarity=0.105 Sum_probs=80.1
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCC----C----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT----F----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS 80 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (154)
..-+.++|+++|..++|||||+++|.+.. . .+..+..+.+.....+..++ ..+.+|||||++++...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 33467999999999999999999999876 1 11111112122222333443 57899999999999888888
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.++.+|++++|+|+++...-.. .+ +...+.. .+.|+++|+||+|+.++.
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt-~e-~l~~~~~----~~ip~IvviNK~Dl~~~~ 141 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQT-GE-HMLILDH----FNIPIIVVITKSDNAGTE 141 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHH-HH-HHHHHHH----TTCCBCEEEECTTSSCHH
T ss_pred HHhhCCEEEEEEecCCCccHHH-HH-HHHHHHH----cCCCEEEEEECCCcccch
Confidence 8999999999999987322111 11 1222222 257789999999998654
No 164
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.74 E-value=5.8e-19 Score=134.38 Aligned_cols=117 Identities=16% Similarity=0.145 Sum_probs=78.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCC--CCCC----------------------------CCcceeeeEEEEEEECCeEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDT--FEEL----------------------------SPTIGVDFKIKHVALGGKKM 61 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~~ 61 (154)
..++|+++|.+++|||||+++|++.. +... ....+.+.......+.....
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 56999999999999999999998641 1100 00112222222223333456
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCCcch---HH---HHHHHHHHHHhhhcCCCCC-cEEEEEeCCCCCC
Q 031704 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDC-IKLLVGNKVDKVC 133 (154)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~-~~ivv~nK~Dl~~ 133 (154)
.+.+|||||+++|...+...++.+|++++|+|+++... |+ .... +...+.. .+. ++++|+||+|+.+
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHHH----cCCCeEEEEEEcccccc
Confidence 79999999999999888888999999999999987531 21 2222 2222222 244 4899999999974
No 165
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.74 E-value=2.3e-17 Score=122.17 Aligned_cols=116 Identities=21% Similarity=0.156 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------cccccccccccC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTSSYYRG 84 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~~~~ 84 (154)
.++++|.+|+|||||+|++.+... ....+..+.+.....+.+++ ..+.+|||+|.. .+.... ..++.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 499999999999999999998876 22333334345556677777 467899999962 122222 24678
Q ss_pred ccEEEEEEECCCcc--hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 85 AQGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 85 ~~~~v~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+|++++|+|++++. ..+.... |.+.+... ...+.|+++|+||+|+....
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~ 308 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQS-SFEILREI-GVSGKPILVTLNKIDKINGD 308 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHH-HHHHHHHH-TCCSCCEEEEEECGGGCCSC
T ss_pred CCEEEEEEECCCCcchHHHHHHH-HHHHHHHh-CcCCCCEEEEEECCCCCCch
Confidence 99999999999876 4444444 66666654 44578999999999997543
No 166
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.73 E-value=1.9e-17 Score=120.64 Aligned_cols=75 Identities=16% Similarity=0.159 Sum_probs=62.5
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECC----------CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCC
Q 031704 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129 (154)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 129 (154)
.+.+.+|||+|++.++..|..++++++++++|+|++ +..++..... |+..+.......+.|++|++||+
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~-~~~~i~~~~~~~~~~iiL~~NK~ 244 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFLNKK 244 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH-HHHHHHTSGGGTTCEEEEEEECH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHH-HHHHHhhhhccCCceEEEEEECc
Confidence 478999999999999999999999999999999654 6777888777 55555544345678999999999
Q ss_pred CCCCch
Q 031704 130 DKVCPW 135 (154)
Q Consensus 130 Dl~~~~ 135 (154)
|+..++
T Consensus 245 DL~~~k 250 (327)
T 3ohm_A 245 DLLEEK 250 (327)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 997554
No 167
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.73 E-value=1.8e-17 Score=131.54 Aligned_cols=122 Identities=18% Similarity=0.208 Sum_probs=84.3
Q ss_pred CCCceeEEEEEEcCCCCCHHHHHHHHhcCC--CC------------CC---CCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 031704 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDT--FE------------EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 8 ~~~~~~~ki~v~G~~~~GKstli~~l~~~~--~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (154)
.......+|+++|.+++|||||+++|+... .. .. ....+.+.......+....+.+++|||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 344577999999999999999999998421 10 00 00112222222222222246799999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+.++......+++.+|++++|+|+++..+...... |... .. .+.|+++|+||+|+....
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~-~~----~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-EK----YKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHH-HH----TTCCEEEEEECTTSTTCC
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHH-HH----cCCCEEEEEECCCcccCC
Confidence 99999888999999999999999999877665544 5543 22 378999999999997654
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.73 E-value=6.7e-18 Score=125.30 Aligned_cols=105 Identities=9% Similarity=0.069 Sum_probs=75.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~ 94 (154)
+|+++|.+++|||||+++|+ ..+.+.......+......+.+|||||+++|.......++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 12222222223344344579999999999998777778899999999999
Q ss_pred CCcchHHHHHHHHHHHHhhhcCCCCCcE-EEEEe-CCCCCCchh
Q 031704 95 TRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGN-KVDKVCPWR 136 (154)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~-ivv~n-K~Dl~~~~~ 136 (154)
+. ..+....+ |...+... +.|. ++++| |+|+ +++.
T Consensus 93 ~~-g~~~qt~e-~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~ 129 (370)
T 2elf_A 93 PQ-GLDAHTGE-CIIALDLL----GFKHGIIALTRSDST-HMHA 129 (370)
T ss_dssp TT-CCCHHHHH-HHHHHHHT----TCCEEEEEECCGGGS-CHHH
T ss_pred CC-CCcHHHHH-HHHHHHHc----CCCeEEEEEEeccCC-CHHH
Confidence 54 33444444 44444433 4566 88899 9999 5543
No 169
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.72 E-value=7.3e-18 Score=124.27 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=63.2
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCC
Q 031704 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129 (154)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 129 (154)
.+.+.+|||+|++.++..|..++++++++|+|+|+++ ..+++.... |+..+.......+.|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence 5789999999999999999999999999999999999 567888887 66666554345679999999999
Q ss_pred CCCCc
Q 031704 130 DKVCP 134 (154)
Q Consensus 130 Dl~~~ 134 (154)
|+..+
T Consensus 271 DL~~~ 275 (353)
T 1cip_A 271 DLFEE 275 (353)
T ss_dssp HHHHH
T ss_pred Cchhh
Confidence 99643
No 170
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.72 E-value=4.2e-18 Score=124.58 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=64.4
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
+.+.+.+||++|++.++..|..+++.++++|+|+|++ +..++..... |+..+.......+.|++|++||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~-~~~~i~~~~~~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIA-VFKDIMTNEFLKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHH-HHHHHHHCGGGTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHH-HHHHHhhhhccCCCeEEEEEEC
Confidence 4578999999999999999999999999999999998 7788888888 5555554435568899999999
Q ss_pred CCCCCch
Q 031704 129 VDKVCPW 135 (154)
Q Consensus 129 ~Dl~~~~ 135 (154)
+|+..++
T Consensus 238 ~DL~~ek 244 (340)
T 4fid_A 238 MDLFEEK 244 (340)
T ss_dssp HHHHHHH
T ss_pred chhhhhh
Confidence 9996543
No 171
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.72 E-value=1.6e-17 Score=128.90 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=80.8
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC----CCCCcceeeeEEEEEEE-------C-----------------C---
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE----ELSPTIGVDFKIKHVAL-------G-----------------G--- 58 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~----~~~~~~~~~~~~~~~~~-------~-----------------~--- 58 (154)
....++|+++|.+|+|||||+|+|++.++. ...+++ +........ + +
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T--~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~ 139 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT--DCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTF 139 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC--CSEEEEECCSSSEEECCC------------------CC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc--ceEEEEEECCcccccCCceeeecCcccHHHHhhhcccc
Confidence 346689999999999999999999998763 122222 111100000 0 0
Q ss_pred ---eE---------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhc
Q 031704 59 ---KK---------MKLAIWDTAGQER-----------FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS 115 (154)
Q Consensus 59 ---~~---------~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~ 115 (154)
.. ..+.+|||||... +......+++.+|++++|+|+++....+.... |...+.
T Consensus 140 ~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~--- 215 (550)
T 2qpt_A 140 LNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALR--- 215 (550)
T ss_dssp CTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTT---
T ss_pred cccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHH---
Confidence 00 2588999999764 33455566788999999999988544444444 444443
Q ss_pred CCCCCcEEEEEeCCCCCCchhh
Q 031704 116 TNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 116 ~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
....|+++|+||+|+.++.++
T Consensus 216 -~~~~pvilVlNK~Dl~~~~el 236 (550)
T 2qpt_A 216 -GHEDKIRVVLNKADMVETQQL 236 (550)
T ss_dssp -TCGGGEEEEEECGGGSCHHHH
T ss_pred -hcCCCEEEEEECCCccCHHHH
Confidence 235789999999999876554
No 172
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.72 E-value=2.5e-17 Score=121.43 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=62.6
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------CcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK 128 (154)
..+.+.+|||+|++.++..+..++++++++++|+|++ +..+++.... |++.+.......+.|++||+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 6789999999999999999999999999999999998 7889998888 6666655434467899999999
Q ss_pred CCCCCc
Q 031704 129 VDKVCP 134 (154)
Q Consensus 129 ~Dl~~~ 134 (154)
+||..+
T Consensus 260 ~DL~~~ 265 (354)
T 2xtz_A 260 FDIFEK 265 (354)
T ss_dssp HHHHHH
T ss_pred cchhhh
Confidence 998543
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.72 E-value=1.3e-18 Score=136.00 Aligned_cols=119 Identities=20% Similarity=0.199 Sum_probs=63.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC------------------------------CCCCcceeeeEEEEEEECCe
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALGGK 59 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (154)
....++|+++|.+++|||||+++|+...-. ......|+|.......+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999642110 00012233444444444445
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc---hH---HHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCC
Q 031704 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKV 132 (154)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~ 132 (154)
...+.||||||++.|...+...++.+|++|+|+|+++.. .+ ..... ....+.. .+.| +++|+||+|+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e-~l~~~~~----lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTRE-HAYLLRA----LGISEIVVSVNKLDLM 328 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHH-HHHHHHH----SSCCCEEEEEECGGGG
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHH-HHHHHHH----cCCCeEEEEEeccccc
Confidence 578999999999999998888999999999999998642 11 11111 1122222 2444 89999999997
Q ss_pred C
Q 031704 133 C 133 (154)
Q Consensus 133 ~ 133 (154)
+
T Consensus 329 ~ 329 (592)
T 3mca_A 329 S 329 (592)
T ss_dssp T
T ss_pred c
Confidence 5
No 174
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=4.6e-17 Score=121.79 Aligned_cols=84 Identities=24% Similarity=0.246 Sum_probs=48.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEE--EE-------------------ECC-eEEEEEEEeCCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKH--VA-------------------LGG-KKMKLAIWDTAG 70 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~--~~-------------------~~~-~~~~~~i~D~~g 70 (154)
+||+++|.+|+|||||+|++++... ....|.++.+..... +. +++ ..+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 4899999999999999999998874 222332222221111 11 122 256899999999
Q ss_pred ccc----cccc---ccccccCccEEEEEEECCCc
Q 031704 71 QER----FRTL---TSSYYRGAQGIIMVYDVTRR 97 (154)
Q Consensus 71 ~~~----~~~~---~~~~~~~~~~~v~v~d~~~~ 97 (154)
... ...+ ...+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 2222 23457899999999999875
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.71 E-value=1.8e-17 Score=119.36 Aligned_cols=122 Identities=20% Similarity=0.185 Sum_probs=76.7
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CC----CCccee----------------------eeE------------
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-EL----SPTIGV----------------------DFK------------ 50 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~----~~~~~~----------------------~~~------------ 50 (154)
....++|+++|.+|+|||||+|+|++..+. .. ....+. +..
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999998762 11 111110 000
Q ss_pred -----------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCccEEE-EEEECCCcchHHHHH
Q 031704 51 -----------IKHVALG-GKKMKLAIWDTAGQE-------------RFRTLTSSYYRGAQGII-MVYDVTRRDTFTNLA 104 (154)
Q Consensus 51 -----------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~v-~v~d~~~~~s~~~~~ 104 (154)
...+.+. .....+.+|||||.. .+......+++.++.++ +|+|+++..+.....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000 012578999999953 33445666778887666 799998754433322
Q ss_pred HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 105 DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
. |...+ ...+.|+++|+||+|+.++..
T Consensus 183 ~-~~~~~----~~~~~~~i~V~NK~Dl~~~~~ 209 (299)
T 2aka_B 183 K-IAKEV----DPQGQRTIGVITKLDLMDEGT 209 (299)
T ss_dssp H-HHHHH----CTTCSSEEEEEECGGGSCTTC
T ss_pred H-HHHHh----CCCCCeEEEEEEccccCCCCc
Confidence 2 33333 234689999999999976543
No 176
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.71 E-value=1.2e-17 Score=121.33 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=74.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCC----CcceeeeEEEE--------------------------------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELS----PTIGVDFKIKH-------------------------------- 53 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~----~~~~~~~~~~~-------------------------------- 53 (154)
...++|+++|.+|+|||||+|++++..+ +... ...+.......
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999999876 2211 11100000000
Q ss_pred ---------------------EE-ECCeEEEEEEEeCCCccc-------------ccccccccccCccEEEEEEECCCcc
Q 031704 54 ---------------------VA-LGGKKMKLAIWDTAGQER-------------FRTLTSSYYRGAQGIIMVYDVTRRD 98 (154)
Q Consensus 54 ---------------------~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~v~v~d~~~~~ 98 (154)
+. .......+.+|||||... +......+++.+|++++|+|.++..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00 001123689999999653 3445566788999999999975433
Q ss_pred hH-HHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 99 TF-TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 99 s~-~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.. ..... +...+ ...+.|+++|+||+|+..+..
T Consensus 182 ~~~~~~~~-i~~~~----~~~~~~~i~v~NK~Dl~~~~~ 215 (315)
T 1jwy_B 182 LANSDALQ-LAKEV----DPEGKRTIGVITKLDLMDKGT 215 (315)
T ss_dssp STTCSHHH-HHHHH----CSSCSSEEEEEECTTSSCSSC
T ss_pred hhhhHHHH-HHHHh----CCCCCcEEEEEcCcccCCcch
Confidence 11 11111 22232 334789999999999976544
No 177
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=4.4e-17 Score=129.37 Aligned_cols=118 Identities=16% Similarity=0.181 Sum_probs=82.8
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcC--CCCC---CCC------------cceeee--EEEEEEECCeEEEEEEEeCCC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD--TFEE---LSP------------TIGVDF--KIKHVALGGKKMKLAIWDTAG 70 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~--~~~~---~~~------------~~~~~~--~~~~~~~~~~~~~~~i~D~~g 70 (154)
.....+|+++|.+++|||||+++|+.. .... ..+ ..+.+. ....+... .+.+++|||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 345789999999999999999999852 2100 000 011111 11222333 36789999999
Q ss_pred cccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+.++......+++.+|++++|+|+++..+...... |.. +.. .+.|+++|+||+|+....
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~~----~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-ATT----YGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HHH----TTCCEEEEEECTTSTTCC
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HHH----cCCCEEEEEECCCccccc
Confidence 99998888889999999999999998777665544 543 332 368999999999997653
No 178
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=1.8e-17 Score=129.35 Aligned_cols=113 Identities=22% Similarity=0.217 Sum_probs=78.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCC-----CcceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----PTIGVDFKIKHV------------ALGGKKMKLAIWDTAGQERF 74 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~ 74 (154)
+.++|+++|++++|||||++++.+....... ++.+..+..... .++.....+++|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 3479999999999999999999876553322 222221111000 00011125899999999999
Q ss_pred cccccccccCccEEEEEEECCC---cchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 75 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 75 ~~~~~~~~~~~~~~v~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
...+...++.+|++++|+|+++ +++++.+. .+.. .+.|+++++||+|+..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-----~l~~----~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM----YRTPFVVAANKIDRIH 136 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-----HHHH----TTCCEEEEEECGGGST
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-----HHHH----cCCeEEEEeccccccc
Confidence 9999989999999999999998 44444332 2222 4689999999999964
No 179
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.70 E-value=3.7e-17 Score=134.03 Aligned_cols=120 Identities=18% Similarity=0.090 Sum_probs=82.3
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhcCC-------CC--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT-------FE--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
.....++|+++|++++|||||+++|.+.. +. ......|+|.....+.+......+.+|||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 34567999999999999999999998641 10 1112334444333344444556889999999999
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCCCCCc
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKVCP 134 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~Dl~~~ 134 (154)
|.......++.+|++|+|+|+++.... .... |...+... +.| +++++||+|+.+.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdGv~~-QTrE-hL~ll~~l----gIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDGPMP-QTRE-HILLGRQV----GVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTCSCT-THHH-HHHHHHHH----TCSCEEEEEECCTTCCC
T ss_pred HHHHHHHHHhhCCEEEEEEcCCccCcH-HHHH-HHHHHHHc----CCCeEEEEEeecccccc
Confidence 988888889999999999999986432 2233 33344333 567 7899999999853
No 180
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.70 E-value=2.8e-18 Score=131.28 Aligned_cols=116 Identities=15% Similarity=0.163 Sum_probs=78.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v 91 (154)
+.++|+++|+.++|||||++++.+..+.... ..+++.......+......+.+|||||++.|..++...++.+|++++|
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcccc-CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4579999999999999999999876542111 111111111111221224688999999999999999999999999999
Q ss_pred EECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+|+++......... | ..+. ..+.|+++++||+|+...
T Consensus 82 Vda~~g~~~qT~e~-l-~~~~----~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 82 VAADDGVMPQTIEA-I-QHAK----AAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp EETTTBSCTTTHHH-H-HHHH----HTTCCEEEEEECSSSSTT
T ss_pred eecccCccHHHHHH-H-HHHH----hcCceEEEEEEecccccc
Confidence 99988432221111 2 1222 236789999999999753
No 181
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.69 E-value=7.1e-17 Score=130.52 Aligned_cols=117 Identities=20% Similarity=0.226 Sum_probs=85.5
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCC------------CCCC-----C--CcceeeeEEEEEE------------ECC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT------------FEEL-----S--PTIGVDFKIKHVA------------LGG 58 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~------------~~~~-----~--~~~~~~~~~~~~~------------~~~ 58 (154)
.....||+++|+.++|||||+++|+... +.+. . .+.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 3467899999999999999999998642 1000 0 1111112222232 234
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
..+.+++|||||+.+|...+..+++.+|++|+|+|+++..++..... |..... .+.|+++|+||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~~-----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQALG-----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHHH-----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHHH-----cCCCeEEEEECCCcc
Confidence 57899999999999999999999999999999999999887776544 554332 368899999999986
No 182
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.69 E-value=2e-16 Score=125.75 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=84.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCC--CCC------------CCC---cceeeeEEE--EEEE-----CCeEEEEEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE------------LSP---TIGVDFKIK--HVAL-----GGKKMKLAI 65 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~--~~~------------~~~---~~~~~~~~~--~~~~-----~~~~~~~~i 65 (154)
..+..+|+++|..++|||||+++|+... +.. ..+ ..+.+.... .+.. ++..+.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 3466899999999999999999997531 110 000 122222222 2222 223488999
Q ss_pred EeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|||||+.+|......+++.+|++|+|+|+++......... |... . ..+.|+++|+||+|+...+
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~~-~----~~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQA-N----KYKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHHH-H----HcCCCEEEEEeCCCccccc
Confidence 9999999998888889999999999999998765444333 4332 2 2368999999999997654
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.68 E-value=8.9e-17 Score=127.69 Aligned_cols=119 Identities=22% Similarity=0.263 Sum_probs=80.0
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCCCcceee--------eEEEE----------------------------
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVD--------FKIKH---------------------------- 53 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~--------~~~~~---------------------------- 53 (154)
..++|+++|.+|+|||||+|+|++.+.. ...|++... .....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 5689999999999999999999998762 223333110 00000
Q ss_pred -----------------EEECCeE--EEEEEEeCCCccc---ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHH
Q 031704 54 -----------------VALGGKK--MKLAIWDTAGQER---FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI 111 (154)
Q Consensus 54 -----------------~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~ 111 (154)
+..+... ..+.+|||||... .......+++++|++++|+|+++..+...... |.+.+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHHH
Confidence 0111000 2589999999544 34455667889999999999998877666544 54443
Q ss_pred hhhcCCCCCcEEEEEeCCCCCCch
Q 031704 112 DLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 112 ~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
.. .+.|+++|+||+|+....
T Consensus 227 ~~----~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 227 KG----RGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp TT----SCCCEEEEEECGGGGGGG
T ss_pred Hh----hCCCEEEEEECccccccc
Confidence 32 356899999999996543
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.65 E-value=3.2e-16 Score=115.95 Aligned_cols=121 Identities=20% Similarity=0.225 Sum_probs=78.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCccee---eeEE----------E-------------------------
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGV---DFKI----------K------------------------- 52 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~---~~~~----------~------------------------- 52 (154)
..++|+++|.+|||||||+|++.+..+ +......+. .... .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999876 322211110 0000 0
Q ss_pred --------------EEEE-CCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEECCCcchHHHHH
Q 031704 53 --------------HVAL-GGKKMKLAIWDTAGQERF-------------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLA 104 (154)
Q Consensus 53 --------------~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~ 104 (154)
...+ ......+.+|||||...+ ..+...+++++|++++|++.++.+....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-- 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence 0000 011235889999997665 4556677899999999998765443321
Q ss_pred HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 105 DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
. |...+... ...+.|+++|+||+|+.++..
T Consensus 191 ~-~~~l~~~~-~~~~~~~i~V~nK~Dl~~~~~ 220 (360)
T 3t34_A 191 D-AIKISREV-DPSGDRTFGVLTKIDLMDKGT 220 (360)
T ss_dssp H-HHHHHHHS-CTTCTTEEEEEECGGGCCTTC
T ss_pred H-HHHHHHHh-cccCCCEEEEEeCCccCCCcc
Confidence 1 44444443 445679999999999976544
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.63 E-value=4.3e-16 Score=120.75 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=87.6
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCC------------------C---CCCCCcceeeeEEEEEEECCeEEEEEEEeC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT------------------F---EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 68 (154)
..++.+|+|+|+.++|||||..+++... . .......|++.......+..+.+.++++||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT 107 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence 4467899999999999999999996211 1 111122233333333333224468999999
Q ss_pred CCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh-hhhhhhhh
Q 031704 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL-FLSGFWHF 145 (154)
Q Consensus 69 ~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~-~~~~~~~~ 145 (154)
||+.+|.......++-+|++|+|+|+...-....... |... .. .+.|.+++.||+|....+.. ..+++...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a-~~----~~lp~i~fINK~Dr~~ad~~~~~~~i~~~ 179 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVC-RM----RATPVMTFVNKMDREALHPLDVMADIEQH 179 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHH-HH----TTCCEEEEEECTTSCCCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHH-HH----hCCceEEEEecccchhcchhHhhhhhhhh
Confidence 9999999999999999999999999998665444333 5433 33 37899999999999766533 33444443
No 186
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.63 E-value=1.1e-15 Score=104.61 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=70.9
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRTLT 78 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 78 (154)
.....+++++|++|+|||||++++.+..+ ....++.|.+.....+.+++ .+.+|||||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34557999999999999999999998874 44455666554444444433 467899999742 22222
Q ss_pred cccc---cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 79 SSYY---RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 79 ~~~~---~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
..++ +.++++++++|+++..+.... . ....+. ..+.|+++|+||+|+...
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~-~~~~~~----~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ-Q-MIEWAV----DSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHH-H-HHHHHH----HTTCCEEEEEECGGGSCH
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHH-H-HHHHHH----HcCCCeEEEEecccCCCc
Confidence 2333 468999999999986654321 1 112222 236788999999999764
No 187
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=4e-15 Score=109.76 Aligned_cols=83 Identities=23% Similarity=0.190 Sum_probs=56.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQERFR-- 75 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-- 75 (154)
++|+++|.+|+|||||+|++.+..+ ...+|.++.......+.+++. ...+.+|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 5899999999999999999998775 233333222222223444432 1478999999976542
Q ss_pred --cc---ccccccCccEEEEEEECCC
Q 031704 76 --TL---TSSYYRGAQGIIMVYDVTR 96 (154)
Q Consensus 76 --~~---~~~~~~~~~~~v~v~d~~~ 96 (154)
.+ ...+++++|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2335789999999999986
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.59 E-value=4.7e-15 Score=117.37 Aligned_cols=116 Identities=16% Similarity=0.148 Sum_probs=81.7
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC--------------CCCC---cceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE--------------ELSP---TIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~--------------~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
....+|+++|+.|+|||||++++++.... ...+ ..++++......+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 35679999999999999999999843321 0000 112233333333333457899999999999
Q ss_pred ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 74 ~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+......+++.+|++++|+|+++...... .. +...+.. .+.|+++|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~-~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ER-AWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HH-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HH-HHHHHHH----ccCCEEEEecCCchh
Confidence 98888889999999999999887544332 23 3333333 368999999999997
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=108.25 Aligned_cols=123 Identities=21% Similarity=0.254 Sum_probs=68.8
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCC--------CcceeeeEEEEEEECCeEEEEEEEeCCCccccc------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELS--------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------ 75 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------ 75 (154)
.-.++|+++|++|+|||||++.+++.... ... ++.+.......+...+....+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34588999999999999999999987652 211 111111111111223334578999999965431
Q ss_pred -c------------------cccccccCccEEEEEEECCCc-chHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 76 -T------------------LTSSYYRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 76 -~------------------~~~~~~~~~~~~v~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
. +...+++++++.+++|..... .+++.....|...+. ...|+|+|+||+|+...+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHH
Confidence 1 123345556655555554432 344444433555543 268999999999998776
Q ss_pred hhh
Q 031704 136 RLF 138 (154)
Q Consensus 136 ~~~ 138 (154)
++.
T Consensus 184 ev~ 186 (418)
T 2qag_C 184 ECQ 186 (418)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 190
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.56 E-value=1.4e-14 Score=108.77 Aligned_cols=117 Identities=21% Similarity=0.217 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCcc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLT---SSYYRGAQ 86 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~ 86 (154)
.++++|++|||||||++++.+... ...++.++.......+..++ ...+.+||+||... ...+. ...+.+++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999998754 22233333333444455443 24678999999643 11222 22345789
Q ss_pred EEEEEEECCCcchHHHHHHHHHHHHhhhcC-CCCCcEEEEEeCCCCCCc
Q 031704 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 87 ~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~Dl~~~ 134 (154)
.+++++|++ ...+..+.. |.+++..+.. ....|.++|+||+|+...
T Consensus 238 ~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999999998 666777766 6555554411 235789999999999865
No 191
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.55 E-value=4.2e-15 Score=109.70 Aligned_cols=120 Identities=18% Similarity=0.089 Sum_probs=70.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCc----ceeeeE-----------------------------------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPT----IGVDFK----------------------------------- 50 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~----~~~~~~----------------------------------- 50 (154)
...++|+++|.+|+|||||+|+|++.++. ..... .+....
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999998762 22111 110000
Q ss_pred ----------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCcc-EEEEEEECCCcchHHHHHH
Q 031704 51 ----------IKHVALG-GKKMKLAIWDTAGQE-------------RFRTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLAD 105 (154)
Q Consensus 51 ----------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~-~~v~v~d~~~~~s~~~~~~ 105 (154)
...+.+. .....+.+|||||.. .+..+...+++.++ +++++.+++.......
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 0001110 112468999999953 23345555666554 5555666654222111
Q ss_pred HHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 106 IWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 106 ~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
|...+... ...+.|+++|+||+|+.++.
T Consensus 186 -~~~i~~~~-~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 186 -ALKVAKEV-DPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp -HHHHHHHH-CTTCTTEEEEEECGGGSCTT
T ss_pred -HHHHHHHh-CcCCCceEEEeccccccCcc
Confidence 22223332 34578999999999997554
No 192
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.54 E-value=4.6e-14 Score=112.47 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=86.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCC--------------C---CCCCCcceeeeEEEEEEE--C-----CeEEEEEEE
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--------------F---EELSPTIGVDFKIKHVAL--G-----GKKMKLAIW 66 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~--------------~---~~~~~~~~~~~~~~~~~~--~-----~~~~~~~i~ 66 (154)
++..+|+|+|+..+|||||..+|+... + .......|+|.....+.+ . ...+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 567899999999999999999987321 1 011123344443333322 2 236889999
Q ss_pred eCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch-hhhhhhhhhh
Q 031704 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW-RLFLSGFWHF 145 (154)
Q Consensus 67 D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~-~~~~~~~~~~ 145 (154)
|||||.+|.......++-+|++|+|+|+...-....... |.+..+. +.|.+++.||+|....+ ....++++..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~~-----~lp~i~~iNKiDr~~a~~~~~~~ei~~~ 164 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANKY-----GVPRIVYVNKMDRQGANFLRVVEQIKKR 164 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHHH-----TCCEEEEEECSSSTTCCHHHHHHHHHHH
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHHc-----CCCeEEEEccccccCccHHHHHHHhhhh
Confidence 999999999999999999999999999987654433332 5444333 78899999999996554 2344555443
No 193
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.51 E-value=4.5e-14 Score=105.42 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=68.4
Q ss_pred EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------cchHHHHHHHHHHHHhhhcCCCCCc
Q 031704 52 KHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCI 121 (154)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ 121 (154)
..+.+++ +.+.+|||+|++.++..+..+++.++++++|||+++ ..+++.... |+..+.......+.|
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTIS 286 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCC
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCe
Confidence 3444543 789999999999999999999999999999999999 889999888 777776553456789
Q ss_pred EEEEEeCCCCCCch
Q 031704 122 KLLVGNKVDKVCPW 135 (154)
Q Consensus 122 ~ivv~nK~Dl~~~~ 135 (154)
++||+||+||..++
T Consensus 287 iiLvgNK~DL~~~k 300 (402)
T 1azs_C 287 VILFLNKQDLLAEK 300 (402)
T ss_dssp EEEEEECHHHHHHH
T ss_pred EEEEEEChhhhhhh
Confidence 99999999996543
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.1e-13 Score=102.48 Aligned_cols=116 Identities=17% Similarity=0.073 Sum_probs=81.1
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------cccccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYR 83 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~ 83 (154)
...+|+++|.||+|||||+|+|.+.+. ...+|.++.+.....+.+.+. .+.++||||...-. ......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 346899999999999999999998776 455677777777777777765 56788999953211 12334568
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhh-cCCCCCcEEEEEeCCCCC
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~Dl~ 132 (154)
.+|++++|+|++++... ... ....+... ......|.+++.||.|..
T Consensus 149 ~ad~il~vvD~~~p~~~--~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHH--KQI-IEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HCSEEEEEEETTSHHHH--HHH-HHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hcCccccccccCccHHH--HHH-HHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 89999999999986432 222 22233332 122356778999999963
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.47 E-value=2.1e-13 Score=101.01 Aligned_cols=83 Identities=23% Similarity=0.206 Sum_probs=55.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-------------------KKMKLAIWDTAGQER 73 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 73 (154)
++|+++|.+|+|||||+|++.+... ....+..+.........+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 4799999999999999999998653 22223222222222223321 234789999999765
Q ss_pred cc----cc---ccccccCccEEEEEEECCC
Q 031704 74 FR----TL---TSSYYRGAQGIIMVYDVTR 96 (154)
Q Consensus 74 ~~----~~---~~~~~~~~~~~v~v~d~~~ 96 (154)
.. .+ ...+++++|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 12 2335789999999999986
No 196
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.45 E-value=5.9e-14 Score=101.53 Aligned_cols=121 Identities=22% Similarity=0.311 Sum_probs=61.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC-CCCCCC---------CcceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD-TFEELS---------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ER 73 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 73 (154)
...++|+++|++|+|||||++++++. .++... ++..........+.++....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35589999999999999999998875 332211 11111111112222344568999999997 44
Q ss_pred cccccc-------cccc-------------CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCC
Q 031704 74 FRTLTS-------SYYR-------------GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVC 133 (154)
Q Consensus 74 ~~~~~~-------~~~~-------------~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~ 133 (154)
+..... .+++ ++++++++.+.+. .+++.... +.++.. ....++++|+||+|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l--~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAI--HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHH--TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHH--HhcCCEEEEEEeCCCCC
Confidence 444333 2222 2344555544332 22333322 233333 23568999999999987
Q ss_pred chhh
Q 031704 134 PWRL 137 (154)
Q Consensus 134 ~~~~ 137 (154)
.+++
T Consensus 170 ~~e~ 173 (301)
T 2qnr_A 170 LKER 173 (301)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 197
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.45 E-value=1.8e-13 Score=101.16 Aligned_cols=80 Identities=14% Similarity=0.135 Sum_probs=58.9
Q ss_pred EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------cchHHHHHHHHHHHHhhhcCCCCCc
Q 031704 52 KHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCI 121 (154)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~ 121 (154)
..+.++ .+.+.+|||+|++.++..|..++++++++|+|+|+++ ..++..... |+..+.......+.|
T Consensus 194 ~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~-~~~~i~~~~~~~~~p 270 (362)
T 1zcb_A 194 YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLN-IFETIVNNRVFSNVS 270 (362)
T ss_dssp EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSE
T ss_pred EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHH-HHHHHhcchhhCCCC
Confidence 344444 4789999999999999999999999999999999999 778988888 555555443446789
Q ss_pred EEEEEeCCCCCCc
Q 031704 122 KLLVGNKVDKVCP 134 (154)
Q Consensus 122 ~ivv~nK~Dl~~~ 134 (154)
++|++||+|+..+
T Consensus 271 iILv~NK~DL~~~ 283 (362)
T 1zcb_A 271 IILFLNKTDLLEE 283 (362)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEEChhhhhh
Confidence 9999999999643
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.43 E-value=6.5e-15 Score=116.09 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=82.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC--CCC------------CC---CCcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSD--TFE------------EL---SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~--~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (154)
..||+|+|+..+|||||..+|+.. ... +. ....|+|.......+..+.+.++++|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 458999999999999999999731 110 00 0122444444444444455679999999999999
Q ss_pred ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
......++-+|++|+|+|+...-.... ...|.... .. +.|.+++.||+|....+
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~-~~----~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALR-KM----GIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHH-HH----TCSCEECCEECCSSSCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHH-Hc----CCCeEEEEeccccccCC
Confidence 999999999999999999987543332 22244333 33 67889999999986554
No 199
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.41 E-value=1.7e-12 Score=103.44 Aligned_cols=120 Identities=19% Similarity=0.140 Sum_probs=73.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCC-Ccceee----------------------------------------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELS-PTIGVD---------------------------------------- 48 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~-~~~~~~---------------------------------------- 48 (154)
...++|+|+|.+++|||||+|++++..+ +... ..+...
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4567999999999999999999999876 2221 111000
Q ss_pred ----------eEEEEEEECCeEEEEEEEeCCCccc-------------ccccccccc-cCccEEEEEEECCCcchHHHHH
Q 031704 49 ----------FKIKHVALGGKKMKLAIWDTAGQER-------------FRTLTSSYY-RGAQGIIMVYDVTRRDTFTNLA 104 (154)
Q Consensus 49 ----------~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~v~v~d~~~~~s~~~~~ 104 (154)
.....+...+ ...+.++||||... .......++ ..+|++++|.|++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0000111111 12478999999433 122333333 5789999999998753332222
Q ss_pred HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 105 DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
. +...+ ...+.|+++|+||+|+.++..
T Consensus 208 ~-ll~~L----~~~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 208 K-IAKEV----DPQGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp H-HHHHH----CTTCSSEEEEEECTTSSCTTC
T ss_pred H-HHHHH----HhcCCCEEEEEeCcccCCcch
Confidence 2 22333 334789999999999976543
No 200
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.40 E-value=1.4e-13 Score=99.63 Aligned_cols=99 Identities=17% Similarity=0.114 Sum_probs=77.3
Q ss_pred HHHHHHhcCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCcc-hHHHHH
Q 031704 28 TLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLA 104 (154)
Q Consensus 28 tli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~~~ 104 (154)
+++.++..+.+. .+.|+.|..+. .....++ .+.+||+ ++.++.+++.+++++|++++|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 688888887773 56688885554 2222222 6889999 8999999999999999999999999987 677666
Q ss_pred HHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 105 DIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
. |...+.. .+.|+++|+||+||.+++++
T Consensus 106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v 133 (301)
T 1u0l_A 106 K-FLVLAEK----NELETVMVINKMDLYDEDDL 133 (301)
T ss_dssp H-HHHHHHH----TTCEEEEEECCGGGCCHHHH
T ss_pred H-HHHHHHH----CCCCEEEEEeHHHcCCchhH
Confidence 6 8876654 37899999999999876653
No 201
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.38 E-value=2.1e-13 Score=101.50 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=51.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQERFR 75 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 75 (154)
...+++++|.+|+|||||+|++.+... ....|.++.......+.+.+. ...+.+|||||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 457899999999999999999998866 334454544444455555432 2358999999976533
Q ss_pred c-------cccccccCccEEEEEEECCCcch
Q 031704 76 T-------LTSSYYRGAQGIIMVYDVTRRDT 99 (154)
Q Consensus 76 ~-------~~~~~~~~~~~~v~v~d~~~~~s 99 (154)
. .+..+++++|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 2 34566889999999999986443
No 202
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.34 E-value=3.4e-13 Score=99.63 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=41.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
+.+.++||||... .....+..+|++++|+|....+....+.. .....|.++|+||+|+....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~----------~~~~~p~ivVlNK~Dl~~~~ 233 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK----------GVLELADIVVVNKADGEHHK 233 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT----------TSGGGCSEEEEECCCGGGHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH----------hHhhcCCEEEEECCCCcChh
Confidence 5688999999432 22334578999999999876554322211 11235889999999996543
No 203
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.20 E-value=4.5e-12 Score=87.30 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=61.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCCCC-------CCccee--------eeEEEEEEEC----------------CeE
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL-------SPTIGV--------DFKIKHVALG----------------GKK 60 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~~~-------~~~~~~--------~~~~~~~~~~----------------~~~ 60 (154)
...+|+++|.+|+|||||+++|........ .+..+. ......+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999986522110 000000 0000111110 012
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+.+.+|||+|...... .+-...+.+++|+|+++.... ... +... . +.|+++|+||+|+...
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~---~----~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI---F----RVADLIVINKVALAEA 169 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH---H----HTCSEEEEECGGGHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh---h----hcCCEEEEecccCCcc
Confidence 4678899988521111 111246889999998875421 111 1111 1 4678999999999644
No 204
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.18 E-value=6.2e-12 Score=93.30 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=71.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC-----CCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------cccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD-----TFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------TSSY 81 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~ 81 (154)
.+++++|.+|+|||||+|++++. .........+.|.....+.++.. +.++||||-...... ....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 47999999999999999999986 22222333344455555555543 688999995322211 1111
Q ss_pred c---cCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 82 Y---RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 82 ~---~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
+ ++.+.++++++..+...+..+.. +. .....+.|+++++||.|..+..+.
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l~-~l~~~~~~~~~v~~k~d~~~~~~~ 292 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR-----LD-YIKGGRRSFVCYMANELTVHRTKL 292 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE-----EE-EEESSSEEEEEEECTTSCEEEEEG
T ss_pred HhcccccCceEEEEcCCceEEECCEEE-----EE-EccCCCceEEEEecCCcccccccH
Confidence 2 56799999998753321111100 11 113346799999999999765544
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.16 E-value=1.4e-12 Score=95.79 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=39.0
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+.+.++||||...... ...+.+|++++|+|.+..+.+..+.. .. .+.|.++|+||+|+.....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~----~~------~~~p~ivv~NK~Dl~~~~~ 211 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK----GL------MEVADLIVINKDDGDNHTN 211 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH----HH------HHHCSEEEECCCCTTCHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH----hh------hcccCEEEEECCCCCChHH
Confidence 4689999999654332 23578999999999876543211110 00 1357899999999976533
No 206
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=89.74 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=35.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+.+.++||+|.... .......+|.+++|+|++.......+.. .+ ...|.++|+||+|+...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~i------l~~~~ivVlNK~Dl~~~ 227 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----GI------IEMADLVAVTKSDGDLI 227 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----HH------HhcCCEEEEeeecCCCc
Confidence 46789999995311 2334578999999999887543221111 11 13477999999999643
No 207
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.13 E-value=1.8e-10 Score=81.19 Aligned_cols=73 Identities=12% Similarity=-0.004 Sum_probs=43.6
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 61 MKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+.+.+|||||......... ..+.. +++++++|+............+....... ...+.|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccccc
Confidence 4789999999865432211 23456 89999998765433333222111111111 2236789999999999865
Q ss_pred h
Q 031704 135 W 135 (154)
Q Consensus 135 ~ 135 (154)
.
T Consensus 187 ~ 187 (262)
T 1yrb_A 187 E 187 (262)
T ss_dssp H
T ss_pred c
Confidence 4
No 208
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.11 E-value=1.7e-13 Score=94.79 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
..++|+++|.+|+|||||+++++...+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999997754
No 209
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.08 E-value=5.2e-11 Score=88.29 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=68.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TS 79 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 79 (154)
.+++++|.+|+|||||+|++++... .......+.|.....+.++.. +.++||||-...... ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 4799999999999999999998632 222333444444455555443 688999995432211 11
Q ss_pred cc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchhh
Q 031704 80 SY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWRL 137 (154)
Q Consensus 80 ~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 137 (154)
.+ .+..+.++++++......+..+.. + ........|+++++||.|..+..+.
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~-d~l~~~~~~~~~v~nk~d~~~~~~~ 291 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLAR-----F-DYVSGGRRAFTCHFSNRLTIHRTKL 291 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTEE-----E-EEEESSSEEEEEEECTTSCEEEEEH
T ss_pred HhccccccCceEEEEcCCCEEEEcceEE-----E-EEecCCCceEEEEecCccccccccH
Confidence 11 246788888888743211111100 1 1113346799999999999766544
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.06 E-value=3.2e-10 Score=84.57 Aligned_cols=85 Identities=24% Similarity=0.269 Sum_probs=60.2
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCC--CCCCCcceeeeEEEEEEECCe-------------E--EEEEEEeCCCccc-
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGK-------------K--MKLAIWDTAGQER- 73 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~i~D~~g~~~- 73 (154)
...++.++|++|+|||||+|.+.+... ....|.++.......+.+.+. . ..+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 457999999999999999999999764 334454444444555555541 1 3578999999432
Q ss_pred ------ccccccccccCccEEEEEEECCC
Q 031704 74 ------FRTLTSSYYRGAQGIIMVYDVTR 96 (154)
Q Consensus 74 ------~~~~~~~~~~~~~~~v~v~d~~~ 96 (154)
+.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234455789999999999864
No 211
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.94 E-value=2.2e-09 Score=76.36 Aligned_cols=119 Identities=23% Similarity=0.245 Sum_probs=62.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCCC---------CcceeeeEEEE-EEECCeEEEEEEEeCCCccccc-------
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS---------PTIGVDFKIKH-VALGGKKMKLAIWDTAGQERFR------- 75 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~~~~~------- 75 (154)
.++++++|++|+|||||+|.+++...+... +.......... .+-.+-...+.++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 478999999999999999999875431110 00000000011 1111112367889999831100
Q ss_pred cc---------------------ccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 76 TL---------------------TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 76 ~~---------------------~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.. ..-.+.+++++++++|.... .++.........+. .. .++++|.||+|...+
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L~----~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHLS----KV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHHH----TT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHHH----hc-CcEEEEEeccccCCH
Confidence 00 01112346889999986521 11122121223332 22 789999999999866
Q ss_pred hhh
Q 031704 135 WRL 137 (154)
Q Consensus 135 ~~~ 137 (154)
.+.
T Consensus 156 ~e~ 158 (270)
T 3sop_A 156 EEK 158 (270)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 212
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.90 E-value=5e-09 Score=75.69 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=49.9
Q ss_pred cccccccccccccCccEEEEEEECCCcc-hHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 71 QERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
++++..+.+.+++++|++++|+|++++. ++..+.. |+..+.. .++|+++|+||+||.++++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~----~~~~~ilV~NK~DL~~~~~ 127 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEY----FKVEPVIVFNKIDLLNEEE 127 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHH----TTCEEEEEECCGGGCCHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHh----CCCCEEEEEEcccCCCccc
Confidence 5677778888899999999999999886 7776666 7766554 4789999999999987653
No 213
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.87 E-value=7.2e-10 Score=81.29 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=35.3
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
+.+.++||+|...-. ......+|.+++++|....+....+.. .+. ..+.++++||+|+...
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i~------~~~~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GIF------ELADMIAVNKADDGDG 208 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----THH------HHCSEEEEECCSTTCC
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HHh------ccccEEEEEchhccCc
Confidence 468899999964321 223467899999999865432111111 111 2345777899998643
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.86 E-value=1.5e-08 Score=76.24 Aligned_cols=119 Identities=18% Similarity=0.269 Sum_probs=61.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcCCCC--CCC-CcceeeeEEEEE--EECCeEEEEEEEeCCCcccc------------
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELS-PTIGVDFKIKHV--ALGGKKMKLAIWDTAGQERF------------ 74 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~~~~--~~~-~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~------------ 74 (154)
..++++++|++|+|||||+|.+.+.... ... ...+.......+ .-.+-...+.++|++|....
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3467999999999999999999987541 111 011111111111 11222346888999874321
Q ss_pred --ccc----ccc---------cccC--ccE-EEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 75 --RTL----TSS---------YYRG--AQG-IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 75 --~~~----~~~---------~~~~--~~~-~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
... ... .... .|+ ++++.|....-+..+ .+.++.. . .+.|+|+|.||+|...+.+
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L-~-~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKL-D-SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHT-C-SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHH-h-hCCCEEEEEcchhccchHH
Confidence 000 011 1112 234 444555443222222 1233332 2 5789999999999987665
Q ss_pred h
Q 031704 137 L 137 (154)
Q Consensus 137 ~ 137 (154)
.
T Consensus 194 ~ 194 (427)
T 2qag_B 194 L 194 (427)
T ss_dssp H
T ss_pred H
Confidence 4
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=2.4e-09 Score=76.67 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=37.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (154)
...++++++|.+|+|||||+|++.+.......+..+.|.....+..+. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 356899999999999999999999887644444445444433344433 57899999953
No 216
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.81 E-value=1.6e-09 Score=76.82 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=36.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (154)
++++++|.+|+|||||+|++.+.......+..+.|.....+..+. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 589999999999999999999887644455555544333333332 578999999543
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.62 E-value=6.3e-08 Score=74.39 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=63.5
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHh------cCCC----C-CCCCcc-----------eeeeEEEEEE-------------
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFT------SDTF----E-ELSPTI-----------GVDFKIKHVA------------- 55 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~------~~~~----~-~~~~~~-----------~~~~~~~~~~------------- 55 (154)
.....|+++|.+|+||||+++.|. +.+. . ...+.. +.........
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 356789999999999999999998 4432 0 111110 1111110000
Q ss_pred ECCeEEEEEEEeCCCcccccc-cc---ccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcE-EEEEeC
Q 031704 56 LGGKKMKLAIWDTAGQERFRT-LT---SSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNK 128 (154)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~-~~---~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK 128 (154)
.....+.+.|+||||...... .. ... ...+|.+++|+|+......... ...+.. ..|+ .+|.||
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~-----~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD-----KVDVASVIVTK 249 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH-----HHCCCCEEEEC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh-----hcCceEEEEeC
Confidence 000235688999999653221 11 111 1268999999999875432111 112221 1454 799999
Q ss_pred CCCCCc
Q 031704 129 VDKVCP 134 (154)
Q Consensus 129 ~Dl~~~ 134 (154)
+|....
T Consensus 250 ~D~~~~ 255 (504)
T 2j37_W 250 LDGHAK 255 (504)
T ss_dssp TTSCCC
T ss_pred Cccccc
Confidence 999744
No 218
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.46 E-value=1.3e-07 Score=73.81 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=40.1
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcCCCC-CCCCc-ceeeeEEEEE--EE-CCeEEEEEEEeCCCccc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPT-IGVDFKIKHV--AL-GGKKMKLAIWDTAGQER 73 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~~~~-~~~~~-~~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~ 73 (154)
.....+|+|+|.+|+|||||+|+|++.... ....+ .+.+.....+ +. ......+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 346689999999999999999999998742 21111 1222222222 11 11234678899999543
No 219
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.41 E-value=1.2e-07 Score=64.75 Aligned_cols=64 Identities=11% Similarity=0.019 Sum_probs=40.7
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHH---HHHhhhcCCCCCcEEEEEeCC-CCCCc
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA---KEIDLYSTNQDCIKLLVGNKV-DKVCP 134 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~ivv~nK~-Dl~~~ 134 (154)
|+..++.+|..|+.++|++|+|+|.+|.+.++ ....+. ..+.......+.|++|++||. |+..+
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A 178 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 178 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC
Confidence 78889999999999999999999999987655 333232 112221112578999999995 77533
No 220
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.33 E-value=5.6e-07 Score=70.76 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=21.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
..++++|+.|||||||++.+.+-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999998864
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.29 E-value=2e-06 Score=64.62 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=57.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCCCCCC-CCcc-e--eeeEEEEEEECCeEEEEEEEeCCCcccccccccc-----ccc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTI-G--VDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS-----YYR 83 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~~~~~-~~~~-~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-----~~~ 83 (154)
...++++|++|||||||+|.+.+...+.. .-.. + .+.....++ ....-.+.++|++|.......... .+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 45899999999999999999998433111 0000 1 010011111 111114788999985321111111 123
Q ss_pred CccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 84 ~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
..+..++ ++.......+ ..+...+.. .+.|+++|.||.|+.
T Consensus 148 ~~~~~~~-lS~G~~~kqr---v~la~aL~~----~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKND---IDIAKAISM----MKKEFYFVRTKVDSD 188 (413)
T ss_dssp GCSEEEE-EESSCCCHHH---HHHHHHHHH----TTCEEEEEECCHHHH
T ss_pred ccCCeEE-eCCCCccHHH---HHHHHHHHh----cCCCeEEEEecCccc
Confidence 3455554 7765322111 112223332 257999999999974
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.12 E-value=1.4e-05 Score=60.52 Aligned_cols=116 Identities=21% Similarity=0.177 Sum_probs=62.5
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc------CCC-----CCCCC-----------cceeeeEEEEEEEC------------
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS------DTF-----EELSP-----------TIGVDFKIKHVALG------------ 57 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~------~~~-----~~~~~-----------~~~~~~~~~~~~~~------------ 57 (154)
....|+++|++|+||||++..|.. .+. ....+ ..+..........+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998862 221 01111 01111110000000
Q ss_pred -CeEEEEEEEeCCCccccccc----cc--ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCC
Q 031704 58 -GKKMKLAIWDTAGQERFRTL----TS--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (154)
Q Consensus 58 -~~~~~~~i~D~~g~~~~~~~----~~--~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 130 (154)
...+.+.++||+|....... .. .....+|.+++|+|++......... ..+... -.+..+|.||.|
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~~----~~i~gVIlTKlD 250 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKEA----TPIGSIIVTKLD 250 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHHS----CTTEEEEEECCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHhh----CCCeEEEEECCC
Confidence 01256889999995332211 11 1122478999999988754332222 222221 234578999999
Q ss_pred CCCch
Q 031704 131 KVCPW 135 (154)
Q Consensus 131 l~~~~ 135 (154)
.....
T Consensus 251 ~~~~g 255 (443)
T 3dm5_A 251 GSAKG 255 (443)
T ss_dssp SCSSH
T ss_pred Ccccc
Confidence 97554
No 223
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.06 E-value=9.9e-07 Score=63.01 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=45.7
Q ss_pred CCCcccccccccccccCccEEEEEEECCCcchHHHHHHHHH---HHHhhhcCCCCCcEEEEEeC-CCCCCc
Q 031704 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA---KEIDLYSTNQDCIKLLVGNK-VDKVCP 134 (154)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~ivv~nK-~Dl~~~ 134 (154)
..|++.++..|..|+.++|++|+|+|.+|.+.++...+ +. ..+.......+.|++|++|| .|+..+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~E-L~eL~~mL~e~~~l~~apLLVfANKkQDlp~A 263 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDE-FSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR 263 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHH-HHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHH-HHHHHHHhcchhhcCCCeEEEEeCCcccccCC
Confidence 34678899999999999999999999999887652222 22 22322211357899999997 588543
No 224
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.06 E-value=1.2e-07 Score=72.30 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=56.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccc--------cc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FRTLT--------SS 80 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~~ 80 (154)
....+|+++|.+|+||||+.++|...-.....++.............+......+||..|.+. ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999987542211112211100000000001112335788888632 23322 44
Q ss_pred cccCccEEEEEEECCCcchHHHHHHHHHHHHhhh
Q 031704 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY 114 (154)
Q Consensus 81 ~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~ 114 (154)
++...++.++|+|.++. +.+.... |.+.+...
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~~ 148 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQN 148 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHhc
Confidence 45567888999999987 3444444 66666554
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.04 E-value=9.1e-06 Score=61.42 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=38.5
Q ss_pred EEEEEEEeCCCccccccc----c--cccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCC-c-EEEEEeCCCC
Q 031704 60 KMKLAIWDTAGQERFRTL----T--SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC-I-KLLVGNKVDK 131 (154)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~--~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~-~ivv~nK~Dl 131 (154)
.+.+.++||||....... . ...+..+|.+++|+|+..... ... ....+ .... | ..+|.||+|.
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~----~~~~~--~~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI----QAKAF--KEAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH----HHHHH--HTTSCSCEEEEEECSSS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH----HHHHH--hhcccCCeEEEEeCCCC
Confidence 346789999996532111 1 111236899999999876432 111 12222 1123 4 7899999998
Q ss_pred CCc
Q 031704 132 VCP 134 (154)
Q Consensus 132 ~~~ 134 (154)
...
T Consensus 251 ~~~ 253 (432)
T 2v3c_C 251 SAK 253 (432)
T ss_dssp CST
T ss_pred ccc
Confidence 643
No 226
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.02 E-value=6.1e-06 Score=62.51 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=23.2
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..+..-|+|+|++++|||+|+|++++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345677999999999999999999863
No 227
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.93 E-value=3.6e-06 Score=62.32 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=44.3
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCch
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPW 135 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~ 135 (154)
..+.|......+.+.++++++|+|++++. ..|...+.... .+.|+++|+||+||.++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~ 112 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFV--GNNKVLLVGNKADLIPKS 112 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHS--SSSCEEEEEECGGGSCTT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHh--CCCcEEEEEEChhcCCcc
Confidence 35778888888888899999999999853 22666666652 378999999999997543
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.87 E-value=8.6e-06 Score=58.18 Aligned_cols=64 Identities=16% Similarity=0.021 Sum_probs=41.1
Q ss_pred EEeCCCcc-cccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 65 IWDTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 65 i~D~~g~~-~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
+-..||+. .........+.++|+++.|+|+.++.+.... .+.... .+.|.++|+||+||.+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~------~l~~~l--~~kp~ilVlNK~DL~~~~~ 67 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP------MIEDIL--KNKPRIMLLNKADKADAAV 67 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHC--SSSCEEEEEECGGGSCHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH------HHHHHH--CCCCEEEEEECcccCCHHH
Confidence 34678875 3445566678999999999999988776421 111111 4688999999999987543
No 229
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.78 E-value=5.5e-06 Score=61.39 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=43.1
Q ss_pred CcccccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCc
Q 031704 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCP 134 (154)
Q Consensus 70 g~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~ 134 (154)
.++.|......+.++++++++|+|++++.+ . |...+.... .+.|+++|+||+||.++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s-~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----S-FIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----G-CCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----c-hhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 367888888888888999999999999774 1 444444442 36799999999999755
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.76 E-value=1.4e-05 Score=60.34 Aligned_cols=66 Identities=23% Similarity=0.231 Sum_probs=37.9
Q ss_pred EEEEEEeCCCccc--cccc----cccc--ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCC
Q 031704 61 MKLAIWDTAGQER--FRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKV 132 (154)
Q Consensus 61 ~~~~i~D~~g~~~--~~~~----~~~~--~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~ 132 (154)
+.+.++||||... .... .... .-..+.+++|+|+........... .+... -.+..+|.||.|..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~----~f~~~----~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS----RFHQA----SPIGSVIITKMDGT 251 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH----HHHHH----CSSEEEEEECGGGC
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH----HHhcc----cCCcEEEEeccccc
Confidence 4677999999543 1111 1111 114589999999886543322222 22222 13467899999986
Q ss_pred Cc
Q 031704 133 CP 134 (154)
Q Consensus 133 ~~ 134 (154)
..
T Consensus 252 a~ 253 (433)
T 3kl4_A 252 AK 253 (433)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 231
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.66 E-value=3e-05 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.746 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988764
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=5.5e-05 Score=54.40 Aligned_cols=66 Identities=21% Similarity=0.217 Sum_probs=38.3
Q ss_pred EEEEEEEeCCCccc--ccc-ccc-----ccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCc-EEEEEeCCC
Q 031704 60 KMKLAIWDTAGQER--FRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVD 130 (154)
Q Consensus 60 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D 130 (154)
.+.+.++||||... ... ... .....+|.+++|.|+..... ... ..+.+.. ..+ ..+|.||.|
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYD-LASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHH-HHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHH-HHHHHHh-----hCCCCEEEEeCCC
Confidence 34688999999765 221 111 12346899999999875322 111 1112221 234 678999999
Q ss_pred CCCc
Q 031704 131 KVCP 134 (154)
Q Consensus 131 l~~~ 134 (154)
....
T Consensus 251 ~~~~ 254 (297)
T 1j8m_F 251 GTAK 254 (297)
T ss_dssp GCTT
T ss_pred CCcc
Confidence 8643
No 233
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.62 E-value=0.00015 Score=52.32 Aligned_cols=57 Identities=14% Similarity=0.138 Sum_probs=38.3
Q ss_pred ccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 76 ~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.+.+..+.++|.+++|.|+.++..-....+.++... ...++|.++|+||+||.++..
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~~vivlnK~DL~~~~~ 134 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQD 134 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHH
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCccCchhh
Confidence 334445778999999999987655443322122222 345788899999999987644
No 234
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.62 E-value=3.2e-05 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++++|++|||||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.58 E-value=3.9e-05 Score=51.83 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.++++|++|||||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 236
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.47 E-value=6.3e-05 Score=50.17 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
++++|++||||||+++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999998753
No 237
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.46 E-value=6.8e-05 Score=50.43 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++++|++||||||+++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999998764
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.45 E-value=4.7e-05 Score=55.01 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|++|+|||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998754
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.45 E-value=7.3e-05 Score=49.75 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999875
No 240
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.45 E-value=6.9e-05 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++++|++|||||||++.+.+-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998764
No 241
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.42 E-value=7.8e-05 Score=51.08 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|++|||||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999998764
No 242
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.42 E-value=0.00033 Score=50.41 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|++|+|||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999998 54
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.42 E-value=8.5e-05 Score=50.26 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
--|+++|++|+|||||++.|...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999853
No 244
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.41 E-value=8.3e-05 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++++|++|||||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999998764
No 245
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.41 E-value=7.6e-05 Score=49.16 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=17.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 031704 15 KLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~ 34 (154)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999543
No 246
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.41 E-value=0.0002 Score=54.09 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=19.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHh
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~ 34 (154)
....|+++|..|+||||++..|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678889999999999998876
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.37 E-value=0.00012 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
....++++|++|||||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998764
No 248
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.37 E-value=0.00011 Score=49.95 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-|+++|++||||||+++.|....
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999998653
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.34 E-value=0.00013 Score=48.98 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
|+++||+|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.31 E-value=0.00013 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988743
No 251
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.27 E-value=0.00016 Score=48.91 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.-|+++|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998653
No 252
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.27 E-value=0.00016 Score=48.61 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=22.7
Q ss_pred cCCCceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 7 ~~~~~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
+........|++.|++||||||+.+.|..
T Consensus 14 ~~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 14 LVPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp --CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34445557899999999999999998854
No 253
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.26 E-value=0.00018 Score=49.12 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++||||||+.+.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 254
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.25 E-value=0.00023 Score=47.80 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=21.4
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
......|++.|.+||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33446899999999999999998863
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.25 E-value=0.00017 Score=49.73 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988753
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.25 E-value=0.00017 Score=48.52 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
..|+++|++||||||+++.+.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999987654
No 257
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.24 E-value=0.00017 Score=47.96 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.24 E-value=0.0002 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|+.|||||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998866
No 259
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.24 E-value=0.00018 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999987754
No 260
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.24 E-value=0.00017 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
.++++|++|+|||||+|.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997653
No 261
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.24 E-value=0.00018 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.|+++|++||||||+.+.+.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.23 E-value=0.00019 Score=46.74 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCCHHHHHHHH
Q 031704 14 FKLLLIGDSGVGKSTLLLSF 33 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l 33 (154)
+-|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 263
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.22 E-value=0.0006 Score=51.68 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=39.5
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhc------------------CCCCC----CCCcceeeeEEEEEEE---CCeEEEEE
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTS------------------DTFEE----LSPTIGVDFKIKHVAL---GGKKMKLA 64 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~------------------~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~ 64 (154)
..+..=|+|+|+.++|||+|+|.++. ..|.. ...|.|+-.+...+.. ++..+.+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 34566778999999999999996541 12211 1123333233222222 45678899
Q ss_pred EEeCCCccc
Q 031704 65 IWDTAGQER 73 (154)
Q Consensus 65 i~D~~g~~~ 73 (154)
++||.|...
T Consensus 144 llDTEG~~d 152 (457)
T 4ido_A 144 LMDTQGTFD 152 (457)
T ss_dssp EEEECCBTC
T ss_pred EEeccCCCC
Confidence 999999543
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.21 E-value=0.00022 Score=46.44 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|++.|++||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 265
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.20 E-value=0.00021 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 266
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.19 E-value=0.00021 Score=48.09 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++||||||+++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 267
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.19 E-value=0.00021 Score=50.85 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+--
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 46889999999999999998743
No 268
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.19 E-value=0.00021 Score=50.43 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.19 E-value=0.00024 Score=49.35 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 031704 14 FKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~ 34 (154)
..|+++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999988
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.18 E-value=0.00023 Score=46.71 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 271
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.18 E-value=0.00024 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.17 E-value=0.00023 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 273
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.17 E-value=0.00021 Score=50.37 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.++++|++||||||+++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3689999999999999999875
No 274
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.17 E-value=0.00021 Score=48.49 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998853
No 275
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.17 E-value=0.00022 Score=50.42 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46889999999999999998753
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.16 E-value=0.00026 Score=49.32 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|||||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998864
No 277
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.00024 Score=51.23 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.++++|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999999875
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.15 E-value=0.00026 Score=49.48 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988753
No 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.15 E-value=0.00024 Score=49.99 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 280
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00024 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999853
No 281
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.14 E-value=0.00029 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+--
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.13 E-value=0.00026 Score=50.02 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999988753
No 283
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.12 E-value=0.00034 Score=45.86 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++||||||+++.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998754
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.12 E-value=0.00026 Score=49.23 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.12 E-value=0.00024 Score=47.68 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
+++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999988753
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.11 E-value=0.00028 Score=49.38 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|||||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999885
No 287
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.11 E-value=0.00032 Score=47.17 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999998863
No 288
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.11 E-value=0.00029 Score=49.37 Aligned_cols=23 Identities=48% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988754
No 289
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.10 E-value=0.0003 Score=46.18 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-|++.|++||||||+.+.|..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 290
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.10 E-value=0.00029 Score=49.56 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 291
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.10 E-value=0.00026 Score=50.87 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
.++++|++|+|||||+|.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987654
No 292
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.10 E-value=0.00023 Score=48.48 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|||||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 293
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.10 E-value=0.00032 Score=49.42 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999874
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.10 E-value=0.0003 Score=49.73 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|||||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
No 295
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.10 E-value=0.0003 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
..-|+++|++||||||+.+.+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998764
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.09 E-value=0.00037 Score=46.14 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|++.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 297
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.09 E-value=0.00032 Score=46.49 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.-++++|++|+|||||+++++..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999864
No 298
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.09 E-value=0.00029 Score=47.96 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
++|+++|+|||||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.08 E-value=0.0003 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 300
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.08 E-value=0.00031 Score=47.20 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 301
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.07 E-value=0.00048 Score=45.64 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.2
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.....|+++|.+|+||||+++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3456799999999999999998864
No 302
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.07 E-value=0.00036 Score=49.72 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998743
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.07 E-value=0.00045 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 304
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.07 E-value=0.0003 Score=46.43 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 305
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.06 E-value=0.00038 Score=46.58 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
No 306
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.06 E-value=0.00032 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|++|||||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 307
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.05 E-value=0.00034 Score=49.10 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.05 E-value=0.0002 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh-cC
Q 031704 15 KLLLIGDSGVGKSTLLLSFT-SD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~-~~ 36 (154)
-++++|++||||||+++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999998 54
No 309
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.04 E-value=0.00036 Score=48.18 Aligned_cols=20 Identities=40% Similarity=0.735 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 031704 15 KLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~ 34 (154)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999999876
No 310
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.04 E-value=0.00028 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.-+++++|++|||||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 311
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.04 E-value=0.0004 Score=46.66 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|+++|++||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999875
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.04 E-value=0.00044 Score=45.86 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 313
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.03 E-value=0.00036 Score=49.34 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988753
No 314
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.02 E-value=0.00036 Score=50.50 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.4
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
....-++++|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456899999999999999998765
No 315
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.02 E-value=0.00043 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.02 E-value=0.00018 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.01 E-value=0.00059 Score=46.01 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
....|+++|++||||||+.+.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998764
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.01 E-value=0.00049 Score=47.85 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
...+|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999863
No 319
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.00 E-value=0.00037 Score=47.35 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 320
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.00 E-value=0.00046 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.00 E-value=0.00053 Score=46.18 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
+.|+++|++||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999965
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.99 E-value=0.00047 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998753
No 323
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.98 E-value=0.00049 Score=48.00 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.1
Q ss_pred CCceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 9 EFDYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 9 ~~~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.....+.|++.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998754
No 324
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.97 E-value=0.00022 Score=50.37 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=37.9
Q ss_pred CCCccc-ccccccccccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 68 TAGQER-FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 68 ~~g~~~-~~~~~~~~~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
.||+.. ........+.++|+++.|+|+.++.+.... .+. . . ++|.++|+||+||.++..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l-l--~k~~iivlNK~DL~~~~~ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F-S--RKETIILLNKVDIADEKT 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C-T--TSEEEEEEECGGGSCHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h-c--CCCcEEEEECccCCCHHH
Confidence 456542 223455668899999999999987765432 111 1 1 788999999999987543
No 325
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.97 E-value=0.00028 Score=50.91 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|||||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6889999999999999988764
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.96 E-value=0.00044 Score=50.98 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46889999999999999998754
No 327
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.95 E-value=0.00044 Score=50.96 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.++++|++||||||+++.+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999875
No 328
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.95 E-value=0.00059 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 329
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.00046 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998854
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00062 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998753
No 331
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.92 E-value=0.00055 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999988753
No 332
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.91 E-value=0.00061 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.111 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|.+||||||+.+.|..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.91 E-value=0.00053 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.+|+++|++||||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999988654
No 334
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.90 E-value=0.00049 Score=45.16 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999998753
No 335
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.90 E-value=0.00055 Score=50.42 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46889999999999999998754
No 336
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.89 E-value=0.00055 Score=49.88 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|++|+|||||++.+.+--
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.89 E-value=0.00052 Score=47.04 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 031704 14 FKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~ 34 (154)
..|++.|++||||||+.+.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999885
No 338
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.89 E-value=0.00058 Score=44.34 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.89 E-value=0.00072 Score=48.26 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
...-|++.|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999864
No 340
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.89 E-value=0.00053 Score=50.58 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|++|+|||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999864
No 341
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.88 E-value=0.00081 Score=48.13 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=20.6
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHh
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~ 34 (154)
.....|+|.|++|||||||++.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999998764
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.88 E-value=0.00059 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 46889999999999999998754
No 343
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.88 E-value=0.0006 Score=50.39 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 46789999999999999988754
No 344
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.87 E-value=0.0006 Score=50.33 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46889999999999999998754
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.87 E-value=0.00059 Score=50.32 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46889999999999999998753
No 346
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.85 E-value=0.00061 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
...+|+++|.+||||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998853
No 347
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.85 E-value=0.00059 Score=46.51 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
++|+++|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998853
No 348
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.85 E-value=0.00074 Score=46.91 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
..-|.++|+.||||||+++.+.+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.85 E-value=0.00047 Score=44.41 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|++|+|||+|++.+.+.-
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999988643
No 350
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.85 E-value=0.00062 Score=48.27 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998763
No 351
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.84 E-value=0.001 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.2
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHh
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~ 34 (154)
....+-|.++|++|||||||++.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH
Confidence 3455789999999999999998874
No 352
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.84 E-value=0.00065 Score=50.35 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 46889999999999999998754
No 353
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.83 E-value=0.00067 Score=50.25 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46889999999999999988753
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.83 E-value=0.00069 Score=50.17 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.++++|++||||||+++.+.+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999875
No 355
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.83 E-value=0.00066 Score=46.49 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
No 356
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.81 E-value=0.00074 Score=44.47 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|++|+||||+.+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.81 E-value=0.00073 Score=47.03 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998864
No 358
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.80 E-value=0.00074 Score=47.29 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-|+++|++||||||+.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998864
No 359
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.80 E-value=0.00087 Score=43.90 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988654
No 360
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.79 E-value=0.00094 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
...|++.|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999998765
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.79 E-value=0.00088 Score=44.84 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..|++.|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
No 362
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.79 E-value=0.00098 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
...-|+++|+.|||||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 363
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.79 E-value=0.00074 Score=47.19 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=21.3
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.....|+++|++||||||+.+.+..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998864
No 364
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.78 E-value=0.00075 Score=48.64 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.++++|+.||||||+++.+.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4788999999999999998863
No 365
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.78 E-value=0.00076 Score=52.03 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|++||||||+++.+++--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998643
No 366
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.77 E-value=0.00087 Score=44.17 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..+.++|++|+||||++.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.77 E-value=0.00079 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 368
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.77 E-value=0.00074 Score=50.81 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++|+|++||||||+++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998864
No 369
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.76 E-value=0.0011 Score=45.67 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
....-|++.|+.||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34467999999999999999998764
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.76 E-value=0.00085 Score=44.61 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 371
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.75 E-value=0.0003 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-|++.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 372
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.75 E-value=0.00096 Score=44.32 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 373
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.75 E-value=0.00096 Score=49.25 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHH
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSF 33 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l 33 (154)
.+..||+++|.++|||||++.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45799999999999999999986
No 374
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.75 E-value=0.0012 Score=43.66 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998853
No 375
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.75 E-value=0.0011 Score=44.61 Aligned_cols=24 Identities=29% Similarity=0.182 Sum_probs=20.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
...-|.++|++|+||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 376
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.75 E-value=0.00096 Score=46.63 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 031704 14 FKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~ 34 (154)
..|+++|++||||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 377
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.74 E-value=0.00082 Score=50.10 Aligned_cols=22 Identities=45% Similarity=0.656 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999998863
No 378
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.72 E-value=0.0011 Score=44.21 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 379
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.71 E-value=0.00056 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998754
No 380
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.71 E-value=0.00096 Score=45.75 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 031704 16 LLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~ 35 (154)
|+++|+|||||+|...+|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988753
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.71 E-value=0.00095 Score=45.41 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|++|+|||||+..+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999874
No 382
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.71 E-value=0.00093 Score=44.26 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.70 E-value=0.00091 Score=45.10 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|.+||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 384
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.69 E-value=0.0011 Score=43.22 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 385
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.69 E-value=0.0013 Score=44.73 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
+.|++.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 386
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.68 E-value=0.00099 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.--++++|+.||||||+++.+.+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35788999999999999998764
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.67 E-value=0.0011 Score=46.01 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHh
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~ 34 (154)
.+.|++.|++|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999885
No 388
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.66 E-value=0.0013 Score=46.08 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.65 E-value=0.0011 Score=48.35 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
..--++++|+.||||||+++.+.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998864
No 390
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.65 E-value=0.0011 Score=43.64 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|+++|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998754
No 391
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.64 E-value=0.0011 Score=46.82 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998864
No 392
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.64 E-value=0.0011 Score=48.28 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998764
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.60 E-value=0.0013 Score=43.21 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-.+++|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999999754
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.60 E-value=0.0016 Score=42.82 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998865
No 395
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.60 E-value=0.0035 Score=39.80 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..+++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 35899999999999999988754
No 396
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.60 E-value=0.0015 Score=42.41 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999998853
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.59 E-value=0.00055 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.58 E-value=0.00085 Score=44.13 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=15.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999863
No 399
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.56 E-value=0.0013 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|++|+|||||+..+.+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998764
No 400
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.56 E-value=0.00099 Score=46.72 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=21.5
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..+...|++.|..||||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345578999999999999999988653
No 401
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.55 E-value=0.0011 Score=43.25 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..+++.|++|+|||+++..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999988653
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.53 E-value=0.0016 Score=47.18 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
..-++++|+.|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3467889999999999999999753
No 403
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.52 E-value=0.0017 Score=44.30 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..+++.|++|+|||++++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988653
No 404
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.52 E-value=0.0095 Score=43.92 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 031704 16 LLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~ 34 (154)
.+++|+.|||||||++.+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999875
No 405
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.51 E-value=0.0016 Score=44.04 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 406
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.50 E-value=0.0016 Score=44.67 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999873
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0014 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.++++|+.|||||||++.+.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999998764
No 408
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.50 E-value=0.0016 Score=45.38 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|++|+|||++++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 5999999999999999998753
No 409
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.49 E-value=0.0016 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
...-|++.|++||||||+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 410
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.47 E-value=0.0022 Score=45.60 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHh
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~ 34 (154)
..+.|++.|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999885
No 411
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.47 E-value=0.0014 Score=45.88 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.|+++|++||||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998854
No 412
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.47 E-value=0.0018 Score=47.54 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
++.++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998864
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.45 E-value=0.0018 Score=43.86 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
..-|+++|.+|+||||+.+.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998754
No 414
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.44 E-value=0.0017 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.--++++|+.||||||++..+.+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 35789999999999999998764
No 415
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.42 E-value=0.0018 Score=50.61 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6889999999999999998864
No 416
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.42 E-value=0.0022 Score=42.91 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988753
No 417
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.41 E-value=0.0018 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=19.9
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.--++++|+.||||||+++.+.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 35789999999999999998764
No 418
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.40 E-value=0.0019 Score=45.99 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 419
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.39 E-value=0.0043 Score=39.44 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
..+++.|++|+|||++.+.+.....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999976543
No 420
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.34 E-value=0.0021 Score=50.26 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998864
No 421
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.34 E-value=0.0021 Score=49.21 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999998864
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.33 E-value=0.0024 Score=49.56 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|||||||++.+.+--
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998754
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.32 E-value=0.0022 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999999875
No 424
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.32 E-value=0.0024 Score=48.34 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999998764
No 425
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.30 E-value=0.0031 Score=42.31 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.0
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-..+.|.+.|..||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34588999999999999999988643
No 426
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.29 E-value=0.0024 Score=43.25 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-+++.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998864
No 427
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.29 E-value=0.002 Score=43.83 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888764
No 428
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.28 E-value=0.0029 Score=40.61 Aligned_cols=19 Identities=47% Similarity=0.704 Sum_probs=16.6
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 031704 16 LLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~ 34 (154)
.+++|+.|+||||++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999999864
No 429
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.27 E-value=0.0021 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998864
No 430
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.27 E-value=0.002 Score=50.59 Aligned_cols=22 Identities=41% Similarity=0.443 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998874
No 431
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.25 E-value=0.0027 Score=42.50 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988753
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.24 E-value=0.0026 Score=44.95 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998875
No 433
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.23 E-value=0.0018 Score=50.68 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6789999999999999988764
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.22 E-value=0.0026 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.+++.|++|+|||++++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 435
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.0026 Score=49.35 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
-++++|+.|||||||++.+.+.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998754
No 436
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.21 E-value=0.012 Score=43.42 Aligned_cols=50 Identities=18% Similarity=0.140 Sum_probs=31.2
Q ss_pred ccCccEEEEEEECCCcchHHHHHHHHHHHHhhhcCCCCCcEEEEEeCCCCCCchh
Q 031704 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKVCPWR 136 (154)
Q Consensus 82 ~~~~~~~v~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~Dl~~~~~ 136 (154)
..++|.+++|.+. .+.......+.++..... .++|.+||+||+||.++..
T Consensus 128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~ 177 (358)
T 2rcn_A 128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEG 177 (358)
T ss_dssp EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHH
T ss_pred HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchh
Confidence 5678999988665 454433332223322222 3677899999999987654
No 437
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.17 E-value=0.0031 Score=43.76 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 438
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.17 E-value=0.0033 Score=44.33 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..+++.|++|+|||++++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998754
No 439
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.17 E-value=0.003 Score=49.78 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999998754
No 440
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.13 E-value=0.0024 Score=50.07 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.++++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999988764
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.13 E-value=0.0031 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.+++.|++|+|||++++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999998864
No 442
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.13 E-value=0.0036 Score=44.60 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=19.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999986543
No 443
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.13 E-value=0.0033 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..-|+++|++||||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356888999999999999998753
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.11 E-value=0.0038 Score=42.28 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
..|+++|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999997643
No 445
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.09 E-value=0.0034 Score=45.84 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.+++.|++|+|||+|++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 446
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.08 E-value=0.0037 Score=42.87 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877653
No 447
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.08 E-value=0.0034 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.+++.|++|+|||++++.+...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999988753
No 448
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.07 E-value=0.0038 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+.-
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68899999999999999998754
No 449
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.07 E-value=0.0036 Score=44.70 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=19.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.-+++.|+||+|||++++.+...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35677799999999999998753
No 450
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.05 E-value=0.0036 Score=48.62 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~~ 38 (154)
.++++|+.|||||||++.+.+-..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 451
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.05 E-value=0.0058 Score=42.89 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.1
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
.....+++.|++|+|||+++..+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999998764
No 452
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.03 E-value=0.0042 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.02 E-value=0.0046 Score=41.32 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 454
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.00 E-value=0.0054 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=19.8
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHh
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~ 34 (154)
...+|+++|++|+||||+...+.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34689999999999999998764
No 455
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.99 E-value=0.0057 Score=43.54 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988754
No 456
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.97 E-value=0.0043 Score=42.86 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=19.9
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
..+++.++|++||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 347899999999999999998753
No 457
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.96 E-value=0.0047 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.+++.|++|+|||++++.+...-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999987643
No 458
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.96 E-value=0.0043 Score=42.73 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
....|+++|++|+||||+.+.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998864
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.96 E-value=0.0034 Score=45.63 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
++++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998876
No 460
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.95 E-value=0.0053 Score=40.81 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (154)
++|+|.++||||++..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 461
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.95 E-value=0.0047 Score=48.63 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcCC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~~ 37 (154)
.++++|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 462
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.94 E-value=0.0044 Score=44.44 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCCHHHHHHHHh
Q 031704 14 FKLLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~ 34 (154)
-.++++|+.|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478899999999999999875
No 463
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.93 E-value=0.0046 Score=44.92 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..|+++|++|+||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 464
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.92 E-value=0.0044 Score=45.45 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-+.++|++|+|||||+..+...
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998864
No 465
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.91 E-value=0.0052 Score=44.89 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-|+|+|++|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 466
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.87 E-value=0.0051 Score=43.68 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..+++.|++|+|||++++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 467
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.87 E-value=0.0048 Score=44.81 Aligned_cols=22 Identities=27% Similarity=0.684 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 468
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.86 E-value=0.005 Score=45.01 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 469
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.86 E-value=0.0055 Score=44.35 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-|+|+|++|+|||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999998753
No 470
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.84 E-value=0.0069 Score=41.66 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=20.9
Q ss_pred ceeEEEEEEcCCCCCHHHHHHHHhc
Q 031704 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 11 ~~~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.+..-|++.|.+|+||||+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998753
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.0051 Score=48.43 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcCCC
Q 031704 16 LLLIGDSGVGKSTLLLSFTSDTF 38 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~ 38 (154)
++++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999987544
No 472
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.80 E-value=0.0053 Score=44.43 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999998864
No 473
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.79 E-value=0.0057 Score=44.06 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
.--|+++|++|+||||++..+.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34688999999999999998753
No 474
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.79 E-value=0.0069 Score=41.78 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..|++-|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999988643
No 475
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.78 E-value=0.0034 Score=53.64 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+++++|++|||||||++.+++
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 789999999999999999875
No 476
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.0059 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
--|++.||||+|||++++++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 47999999999999999998763
No 477
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.73 E-value=0.0052 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.+++.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 478
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0059 Score=46.04 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
-+++.||||+|||++++++.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 479
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=95.73 E-value=0.0081 Score=44.94 Aligned_cols=24 Identities=33% Similarity=0.589 Sum_probs=21.5
Q ss_pred CceeEEEEEEcCCCCCHHHHHHHH
Q 031704 10 FDYLFKLLLIGDSGVGKSTLLLSF 33 (154)
Q Consensus 10 ~~~~~ki~v~G~~~~GKstli~~l 33 (154)
..+.+|++++|...|||||++.++
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHH
Confidence 356799999999999999999975
No 480
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.70 E-value=0.0066 Score=43.87 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
.-|+|+|++|+|||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 3578999999999999999864
No 481
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.69 E-value=0.0066 Score=43.72 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 6889999999999999998754
No 482
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.68 E-value=0.007 Score=43.68 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
..+++.|++|+|||++++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999998753
No 483
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.68 E-value=0.0065 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 484
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.68 E-value=0.0062 Score=47.04 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 031704 16 LLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~ 34 (154)
++++|++|||||||++.++
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 485
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0067 Score=45.88 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
--|++.||||+|||+|++++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998753
No 486
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.64 E-value=0.014 Score=40.76 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcCC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~~ 37 (154)
..+++.|++|+|||++++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 468999999999999999987654
No 487
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.64 E-value=0.0076 Score=40.66 Aligned_cols=19 Identities=47% Similarity=0.704 Sum_probs=16.2
Q ss_pred EEEEcCCCCCHHHHHHHHh
Q 031704 16 LLLIGDSGVGKSTLLLSFT 34 (154)
Q Consensus 16 i~v~G~~~~GKstli~~l~ 34 (154)
.+++|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4677999999999999863
No 488
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.61 E-value=0.0077 Score=43.97 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988643
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.60 E-value=0.0078 Score=41.02 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
.-|++.|++||||||+++.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5689999999999999998853
No 490
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.59 E-value=0.0072 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcC
Q 031704 15 KLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~~ 36 (154)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999998753
No 491
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.57 E-value=0.0047 Score=48.11 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
...++++|++||||||+++.+.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 367999999999999999998753
No 492
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.56 E-value=0.0031 Score=44.06 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
.+++.|++|+|||++++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999999865
No 493
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.55 E-value=0.0067 Score=44.97 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCCHHHHHHHHhcC
Q 031704 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 12 ~~~ki~v~G~~~~GKstli~~l~~~ 36 (154)
...+++++|++|+|||++++.++..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998754
No 494
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.55 E-value=0.0088 Score=43.05 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..+++.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998764
No 495
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.55 E-value=0.0073 Score=51.65 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 031704 15 KLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 15 ki~v~G~~~~GKstli~~l~~ 35 (154)
+++++|++|||||||++.+++
T Consensus 446 ~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTT
T ss_pred EEEEEecCCCcHHHHHHHhcc
Confidence 689999999999999998886
No 496
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.53 E-value=0.0078 Score=44.07 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-.+++.|++|+|||++++.+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 497
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.52 E-value=0.0077 Score=45.87 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
-+++++|++|+|||++++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999987643
No 498
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.52 E-value=0.0074 Score=46.87 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCCHHHHHHHHhc
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~ 35 (154)
..++++|++|+|||||++.+.+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 499
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.008 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCCHHHHHHHHhcC
Q 031704 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (154)
Q Consensus 14 ~ki~v~G~~~~GKstli~~l~~~ 36 (154)
--+++.||||+|||.+++.+.+.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 35899999999999999999753
No 500
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.51 E-value=0.0062 Score=41.98 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=16.8
Q ss_pred eEEEEEEcCCCCCHHHHHHHHhc
Q 031704 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (154)
Q Consensus 13 ~~ki~v~G~~~~GKstli~~l~~ 35 (154)
..-|++.|++||||||+++.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998753
Done!