Query 031706
Match_columns 154
No_of_seqs 266 out of 1810
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.9 6.5E-24 1.4E-28 134.3 10.2 96 57-152 8-103 (103)
2 cd01793 Fubi Fubi ubiquitin-li 99.9 6.3E-22 1.4E-26 118.7 8.6 74 77-152 1-74 (74)
3 cd01807 GDX_N ubiquitin-like d 99.9 4.1E-22 9E-27 119.5 7.5 73 1-73 1-73 (74)
4 PTZ00044 ubiquitin; Provisiona 99.9 2.3E-21 4.9E-26 116.9 8.8 76 77-152 1-76 (76)
5 cd01793 Fubi Fubi ubiquitin-li 99.9 1.4E-21 3E-26 117.2 7.5 74 1-76 1-74 (74)
6 PTZ00044 ubiquitin; Provisiona 99.9 2.2E-21 4.8E-26 117.0 8.1 76 1-76 1-76 (76)
7 cd01810 ISG15_repeat2 ISG15 ub 99.9 3.5E-21 7.5E-26 115.4 8.5 74 79-152 1-74 (74)
8 cd01803 Ubiquitin Ubiquitin. U 99.8 7.5E-21 1.6E-25 114.6 8.7 76 77-152 1-76 (76)
9 cd01797 NIRF_N amino-terminal 99.8 4.5E-21 9.7E-26 115.7 7.3 74 1-74 1-76 (78)
10 cd01802 AN1_N ubiquitin-like d 99.8 4.8E-21 1E-25 121.2 7.7 76 1-76 28-103 (103)
11 cd01807 GDX_N ubiquitin-like d 99.8 8.4E-21 1.8E-25 113.8 8.3 74 77-150 1-74 (74)
12 cd01806 Nedd8 Nebb8-like ubiq 99.8 1.2E-20 2.5E-25 113.7 8.8 76 77-152 1-76 (76)
13 cd01806 Nedd8 Nebb8-like ubiq 99.8 1.3E-20 2.9E-25 113.5 8.5 76 1-76 1-76 (76)
14 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 6.4E-21 1.4E-25 113.4 6.9 71 1-71 2-72 (73)
15 cd01804 midnolin_N Ubiquitin-l 99.8 2.4E-20 5.1E-25 112.8 9.1 78 76-154 1-78 (78)
16 cd01803 Ubiquitin Ubiquitin. U 99.8 1.3E-20 2.7E-25 113.6 7.9 76 1-76 1-76 (76)
17 cd01804 midnolin_N Ubiquitin-l 99.8 1.4E-20 3E-25 113.8 7.2 75 1-76 2-76 (78)
18 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.7E-20 3.8E-25 112.4 6.9 74 3-76 1-74 (74)
19 cd01805 RAD23_N Ubiquitin-like 99.8 8.5E-20 1.8E-24 110.3 8.2 73 1-73 1-75 (77)
20 cd01809 Scythe_N Ubiquitin-lik 99.8 8.6E-20 1.9E-24 108.8 7.7 72 1-72 1-72 (72)
21 cd01794 DC_UbP_C dendritic cel 99.8 4.3E-20 9.4E-25 109.2 6.3 69 3-71 1-69 (70)
22 cd01797 NIRF_N amino-terminal 99.8 1.8E-19 4E-24 108.7 8.0 74 77-150 1-76 (78)
23 cd01798 parkin_N amino-termina 99.8 1.1E-19 2.4E-24 107.7 6.5 70 3-72 1-70 (70)
24 cd01791 Ubl5 UBL5 ubiquitin-li 99.8 3.4E-19 7.4E-24 106.0 8.1 71 77-147 2-72 (73)
25 cd01794 DC_UbP_C dendritic cel 99.8 2.6E-19 5.5E-24 105.9 7.5 69 80-148 2-70 (70)
26 cd01800 SF3a120_C Ubiquitin-li 99.8 3.2E-19 7E-24 107.4 7.7 70 84-153 5-74 (76)
27 cd01798 parkin_N amino-termina 99.8 4.5E-19 9.8E-24 105.1 7.7 70 79-148 1-70 (70)
28 cd01792 ISG15_repeat1 ISG15 ub 99.8 2.2E-19 4.8E-24 109.1 6.2 73 1-73 3-77 (80)
29 PF00240 ubiquitin: Ubiquitin 99.8 7.9E-19 1.7E-23 103.8 8.0 68 6-73 1-68 (69)
30 cd01805 RAD23_N Ubiquitin-like 99.8 1.5E-18 3.2E-23 104.8 8.8 74 77-150 1-76 (77)
31 cd01808 hPLIC_N Ubiquitin-like 99.8 9E-19 1.9E-23 104.1 7.1 71 1-72 1-71 (71)
32 PF00240 ubiquitin: Ubiquitin 99.8 1.4E-18 3E-23 102.8 7.6 69 82-150 1-69 (69)
33 KOG0003 Ubiquitin/60s ribosoma 99.8 3.7E-20 8.1E-25 114.0 0.6 77 77-153 1-77 (128)
34 cd01809 Scythe_N Ubiquitin-lik 99.8 2.4E-18 5.1E-23 102.5 8.1 72 77-148 1-72 (72)
35 cd01790 Herp_N Homocysteine-re 99.8 1.6E-18 3.4E-23 103.8 6.4 71 1-71 2-78 (79)
36 cd01792 ISG15_repeat1 ISG15 ub 99.8 3.5E-18 7.6E-23 103.8 7.8 72 77-148 3-76 (80)
37 KOG0005 Ubiquitin-like protein 99.8 7E-19 1.5E-23 97.0 4.1 70 1-70 1-70 (70)
38 cd01796 DDI1_N DNA damage indu 99.8 2.1E-18 4.5E-23 102.4 6.5 68 3-70 1-70 (71)
39 cd01763 Sumo Small ubiquitin-r 99.8 1.2E-17 2.5E-22 103.0 9.6 78 75-152 10-87 (87)
40 cd01800 SF3a120_C Ubiquitin-li 99.8 2.7E-18 5.8E-23 103.4 6.3 69 8-76 5-73 (76)
41 cd01808 hPLIC_N Ubiquitin-like 99.7 1.1E-17 2.3E-22 99.5 7.9 70 78-148 2-71 (71)
42 cd01812 BAG1_N Ubiquitin-like 99.7 5.5E-18 1.2E-22 100.7 6.6 70 1-71 1-70 (71)
43 cd01813 UBP_N UBP ubiquitin pr 99.7 7.2E-18 1.6E-22 100.7 6.4 69 1-70 1-72 (74)
44 KOG0004 Ubiquitin/40S ribosoma 99.7 3E-18 6.6E-23 112.8 4.5 77 77-153 1-77 (156)
45 cd01796 DDI1_N DNA damage indu 99.7 2E-17 4.4E-22 98.2 7.1 68 79-146 1-70 (71)
46 cd01763 Sumo Small ubiquitin-r 99.7 5.5E-17 1.2E-21 100.0 8.2 76 1-76 12-87 (87)
47 KOG0003 Ubiquitin/60s ribosoma 99.7 2.2E-18 4.8E-23 106.1 0.8 76 1-76 1-76 (128)
48 cd01812 BAG1_N Ubiquitin-like 99.7 1.1E-16 2.3E-21 95.1 7.4 70 77-147 1-70 (71)
49 cd01790 Herp_N Homocysteine-re 99.7 1.2E-16 2.6E-21 95.6 7.2 71 77-147 2-78 (79)
50 KOG0004 Ubiquitin/40S ribosoma 99.7 2.1E-17 4.6E-22 108.8 3.8 77 1-77 1-77 (156)
51 cd01813 UBP_N UBP ubiquitin pr 99.7 2.5E-16 5.3E-21 94.1 7.5 69 78-147 2-73 (74)
52 smart00213 UBQ Ubiquitin homol 99.7 2.5E-16 5.3E-21 91.5 6.6 64 1-65 1-64 (64)
53 KOG0005 Ubiquitin-like protein 99.7 1.1E-16 2.4E-21 88.3 4.4 70 77-146 1-70 (70)
54 TIGR00601 rad23 UV excision re 99.6 6.3E-16 1.4E-20 117.8 7.6 73 1-73 1-76 (378)
55 cd01799 Hoil1_N Ubiquitin-like 99.6 7.9E-16 1.7E-20 92.0 5.9 64 7-71 9-74 (75)
56 cd01799 Hoil1_N Ubiquitin-like 99.6 4.3E-15 9.2E-20 88.8 7.2 65 82-147 8-74 (75)
57 smart00213 UBQ Ubiquitin homol 99.6 6.4E-15 1.4E-19 85.5 6.7 64 77-141 1-64 (64)
58 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 5.3E-15 1.2E-19 87.4 5.2 53 95-147 19-74 (75)
59 TIGR00601 rad23 UV excision re 99.6 1.7E-14 3.7E-19 110.0 8.4 73 77-149 1-76 (378)
60 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 3.8E-15 8.2E-20 88.0 3.7 53 19-71 19-74 (75)
61 cd01769 UBL Ubiquitin-like dom 99.5 2.7E-14 5.9E-19 84.0 6.2 67 5-71 2-68 (69)
62 PF11976 Rad60-SLD: Ubiquitin- 99.5 6.1E-14 1.3E-18 83.4 7.2 71 1-71 1-72 (72)
63 cd01814 NTGP5 Ubiquitin-like N 99.5 1.4E-14 3.1E-19 91.2 4.2 74 1-74 5-92 (113)
64 KOG0010 Ubiquitin-like protein 99.5 2.3E-14 5.1E-19 110.1 5.6 73 1-74 16-88 (493)
65 cd01769 UBL Ubiquitin-like dom 99.5 1.2E-13 2.6E-18 81.2 7.5 67 81-147 2-68 (69)
66 cd01795 USP48_C USP ubiquitin- 99.5 6E-14 1.3E-18 85.9 6.0 62 12-73 16-78 (107)
67 cd01814 NTGP5 Ubiquitin-like N 99.5 1.3E-13 2.8E-18 86.8 5.9 75 77-151 5-93 (113)
68 cd01795 USP48_C USP ubiquitin- 99.5 2E-13 4.3E-18 83.7 6.3 63 88-150 16-79 (107)
69 KOG0011 Nucleotide excision re 99.4 1.9E-13 4.1E-18 100.4 6.4 74 1-74 1-76 (340)
70 PF11976 Rad60-SLD: Ubiquitin- 99.4 1.1E-12 2.3E-17 78.0 6.8 71 77-147 1-72 (72)
71 cd01789 Alp11_N Ubiquitin-like 99.4 2.2E-12 4.8E-17 78.9 7.5 71 2-72 3-81 (84)
72 KOG0010 Ubiquitin-like protein 99.4 1.1E-12 2.4E-17 100.9 6.9 73 77-150 16-88 (493)
73 PF14560 Ubiquitin_2: Ubiquiti 99.3 1.2E-11 2.5E-16 76.3 7.6 71 2-72 3-83 (87)
74 KOG0011 Nucleotide excision re 99.3 1.1E-11 2.3E-16 91.3 7.2 74 77-150 1-76 (340)
75 cd01789 Alp11_N Ubiquitin-like 99.3 3.9E-11 8.4E-16 73.4 8.2 70 79-148 4-81 (84)
76 PLN02560 enoyl-CoA reductase 99.2 5.3E-11 1.2E-15 88.9 7.0 70 1-70 1-81 (308)
77 cd01788 ElonginB Ubiquitin-lik 99.2 9.3E-11 2E-15 73.7 6.9 68 85-152 10-84 (119)
78 cd01788 ElonginB Ubiquitin-lik 99.2 9.1E-11 2E-15 73.8 6.5 73 1-73 1-81 (119)
79 KOG0001 Ubiquitin and ubiquiti 99.2 4.3E-10 9.2E-15 66.3 9.2 74 79-152 2-75 (75)
80 PF14560 Ubiquitin_2: Ubiquiti 99.2 1.3E-10 2.9E-15 71.5 7.1 70 78-147 3-82 (87)
81 PF13881 Rad60-SLD_2: Ubiquiti 99.1 5.5E-10 1.2E-14 71.4 8.3 73 2-74 4-90 (111)
82 KOG0001 Ubiquitin and ubiquiti 99.1 8.9E-10 1.9E-14 64.9 7.9 72 3-74 2-73 (75)
83 PF11543 UN_NPL4: Nuclear pore 99.1 3E-10 6.6E-15 68.6 5.0 69 1-70 5-78 (80)
84 KOG4248 Ubiquitin-like protein 99.1 2.6E-10 5.7E-15 94.3 6.0 74 2-76 4-77 (1143)
85 PF13881 Rad60-SLD_2: Ubiquiti 99.0 4.1E-09 8.9E-14 67.4 9.2 73 78-150 4-90 (111)
86 PLN02560 enoyl-CoA reductase 99.0 1.1E-09 2.3E-14 82.0 7.5 69 77-145 1-80 (308)
87 cd01811 OASL_repeat1 2'-5' oli 99.0 3E-09 6.4E-14 61.8 7.1 72 1-73 1-77 (80)
88 cd01801 Tsc13_N Ubiquitin-like 99.0 1.1E-09 2.5E-14 65.8 5.4 68 2-69 2-74 (77)
89 PF11543 UN_NPL4: Nuclear pore 98.9 2.3E-09 5E-14 64.7 4.8 71 75-146 3-78 (80)
90 KOG4248 Ubiquitin-like protein 98.9 6.4E-09 1.4E-13 86.4 6.7 74 78-152 4-77 (1143)
91 cd01801 Tsc13_N Ubiquitin-like 98.9 1.2E-08 2.6E-13 61.3 6.3 52 94-145 20-74 (77)
92 cd00196 UBQ Ubiquitin-like pro 98.7 4.6E-08 9.9E-13 55.3 6.1 67 5-71 2-68 (69)
93 cd00196 UBQ Ubiquitin-like pro 98.7 1.2E-07 2.5E-12 53.6 7.4 64 84-147 5-68 (69)
94 KOG1769 Ubiquitin-like protein 98.7 3.2E-07 6.9E-12 56.6 9.1 77 77-153 21-97 (99)
95 KOG1769 Ubiquitin-like protein 98.6 4E-07 8.7E-12 56.1 7.6 75 2-76 22-96 (99)
96 KOG3493 Ubiquitin-like protein 98.6 2.4E-08 5.1E-13 56.3 1.3 69 2-70 3-71 (73)
97 KOG3493 Ubiquitin-like protein 98.5 5.7E-08 1.2E-12 54.8 1.5 68 79-146 4-71 (73)
98 cd01811 OASL_repeat1 2'-5' oli 98.5 1.7E-06 3.7E-11 50.4 7.1 69 78-147 2-75 (80)
99 KOG1872 Ubiquitin-specific pro 98.5 4.1E-07 9E-12 70.3 5.9 71 3-74 6-77 (473)
100 KOG0006 E3 ubiquitin-protein l 98.3 2.4E-06 5.2E-11 63.2 6.6 73 1-73 1-77 (446)
101 PF13019 Telomere_Sde2: Telome 98.3 6.7E-06 1.5E-10 55.6 8.2 77 77-153 1-89 (162)
102 KOG4495 RNA polymerase II tran 98.2 2.2E-06 4.7E-11 52.3 4.1 54 85-138 10-65 (110)
103 KOG4495 RNA polymerase II tran 98.2 2.1E-06 4.5E-11 52.4 4.1 62 1-62 1-65 (110)
104 PF11470 TUG-UBL1: GLUT4 regul 98.2 8.8E-06 1.9E-10 47.0 6.1 63 83-145 3-65 (65)
105 KOG0006 E3 ubiquitin-protein l 98.2 3.4E-06 7.3E-11 62.4 5.3 60 87-146 14-73 (446)
106 KOG1872 Ubiquitin-specific pro 98.2 5.9E-06 1.3E-10 64.1 6.4 72 79-151 6-78 (473)
107 COG5227 SMT3 Ubiquitin-like pr 98.1 1E-05 2.2E-10 48.9 5.2 75 2-76 26-100 (103)
108 PF11470 TUG-UBL1: GLUT4 regul 98.0 2.4E-05 5.3E-10 45.1 5.9 63 7-69 3-65 (65)
109 PF08817 YukD: WXG100 protein 98.0 3.6E-05 7.7E-10 46.4 5.9 68 2-69 4-78 (79)
110 COG5227 SMT3 Ubiquitin-like pr 97.9 1.9E-05 4E-10 47.8 3.4 77 77-153 25-101 (103)
111 PF10302 DUF2407: DUF2407 ubiq 97.8 5E-05 1.1E-09 47.4 5.3 57 3-59 3-64 (97)
112 PF00789 UBX: UBX domain; Int 97.8 0.0002 4.4E-09 43.2 7.9 69 2-70 8-81 (82)
113 PF00789 UBX: UBX domain; Int 97.8 0.00023 5.1E-09 43.0 7.6 69 77-145 7-80 (82)
114 PF13019 Telomere_Sde2: Telome 97.7 0.00027 5.9E-09 47.9 7.8 75 1-75 1-87 (162)
115 smart00166 UBX Domain present 97.7 0.00042 9E-09 41.7 7.7 69 77-145 5-78 (80)
116 PF08817 YukD: WXG100 protein 97.7 0.00011 2.4E-09 44.2 4.9 67 79-145 5-78 (79)
117 smart00166 UBX Domain present 97.7 0.00031 6.8E-09 42.3 6.6 68 2-69 6-78 (80)
118 cd01772 SAKS1_UBX SAKS1-like U 97.5 0.0012 2.6E-08 39.6 7.6 68 77-145 5-77 (79)
119 KOG0013 Uncharacterized conser 97.5 0.0002 4.3E-09 50.2 4.6 64 9-72 155-218 (231)
120 KOG0013 Uncharacterized conser 97.5 0.00028 6.1E-09 49.5 5.1 64 85-148 155-218 (231)
121 COG5417 Uncharacterized small 97.5 0.0011 2.5E-08 38.7 6.6 66 4-69 10-80 (81)
122 cd01772 SAKS1_UBX SAKS1-like U 97.4 0.0011 2.4E-08 39.9 6.9 67 2-69 6-77 (79)
123 cd01773 Faf1_like1_UBX Faf1 ik 97.4 0.0023 5E-08 38.6 7.6 70 77-147 6-80 (82)
124 cd01771 Faf1_UBX Faf1 UBX doma 97.4 0.0027 5.9E-08 38.2 7.9 70 76-146 4-78 (80)
125 KOG1639 Steroid reductase requ 97.3 0.00039 8.6E-09 50.0 4.5 70 1-70 1-77 (297)
126 cd01774 Faf1_like2_UBX Faf1 ik 97.3 0.0031 6.7E-08 38.5 7.8 70 76-146 4-83 (85)
127 cd01767 UBX UBX (ubiquitin reg 97.3 0.0015 3.3E-08 39.0 6.4 64 2-66 4-72 (77)
128 cd01767 UBX UBX (ubiquitin reg 97.3 0.0035 7.6E-08 37.4 7.9 64 77-141 3-71 (77)
129 PF10302 DUF2407: DUF2407 ubiq 97.3 0.00095 2.1E-08 41.7 5.4 49 88-136 13-65 (97)
130 cd01770 p47_UBX p47-like ubiqu 97.3 0.0031 6.8E-08 37.9 7.3 67 77-143 5-75 (79)
131 cd01770 p47_UBX p47-like ubiqu 97.2 0.0026 5.6E-08 38.3 6.7 64 2-65 6-73 (79)
132 COG5417 Uncharacterized small 97.2 0.0055 1.2E-07 35.9 7.2 67 79-145 9-80 (81)
133 PF14533 USP7_C2: Ubiquitin-sp 97.2 0.01 2.2E-07 42.5 10.3 102 12-115 35-161 (213)
134 cd01773 Faf1_like1_UBX Faf1 ik 97.1 0.0052 1.1E-07 37.1 7.2 69 2-71 7-80 (82)
135 PRK06437 hypothetical protein; 97.0 0.01 2.2E-07 34.4 7.7 59 85-152 9-67 (67)
136 PF12436 USP7_ICP0_bdg: ICP0-b 97.0 0.011 2.4E-07 43.3 9.2 106 15-120 89-223 (249)
137 KOG3206 Alpha-tubulin folding 97.0 0.0028 6.1E-08 44.5 5.7 73 2-74 3-83 (234)
138 KOG1639 Steroid reductase requ 96.9 0.0021 4.6E-08 46.4 5.1 68 78-145 2-76 (297)
139 cd01774 Faf1_like2_UBX Faf1 ik 96.9 0.0089 1.9E-07 36.4 7.2 67 2-69 6-82 (85)
140 cd01771 Faf1_UBX Faf1 UBX doma 96.9 0.0087 1.9E-07 36.0 6.9 68 2-70 6-78 (80)
141 KOG4583 Membrane-associated ER 96.5 0.0009 2E-08 50.2 0.8 72 2-73 11-88 (391)
142 PF09379 FERM_N: FERM N-termin 96.5 0.034 7.3E-07 33.1 7.6 58 5-62 1-65 (80)
143 cd06409 PB1_MUG70 The MUG70 pr 96.5 0.018 3.8E-07 35.1 6.1 44 2-45 2-48 (86)
144 PRK06437 hypothetical protein; 96.3 0.044 9.6E-07 31.8 7.0 61 4-73 4-64 (67)
145 PF09379 FERM_N: FERM N-termin 96.2 0.046 9.9E-07 32.5 7.1 68 81-148 1-75 (80)
146 KOG3206 Alpha-tubulin folding 96.2 0.015 3.4E-07 40.9 5.5 59 89-147 15-80 (234)
147 KOG4583 Membrane-associated ER 96.2 0.0024 5.2E-08 48.0 1.5 60 76-135 9-72 (391)
148 PF11620 GABP-alpha: GA-bindin 96.1 0.022 4.7E-07 34.4 5.0 61 89-149 5-65 (88)
149 cd00754 MoaD Ubiquitin domain 96.0 0.054 1.2E-06 32.1 6.6 60 88-152 17-80 (80)
150 PF12754 Blt1: Cell-cycle cont 96.0 0.0018 3.9E-08 48.3 0.0 77 77-153 79-182 (309)
151 cd06406 PB1_P67 A PB1 domain i 95.8 0.051 1.1E-06 32.6 5.8 37 12-48 12-48 (80)
152 cd06407 PB1_NLP A PB1 domain i 95.8 0.1 2.2E-06 31.6 7.1 46 1-47 1-47 (82)
153 PF15044 CLU_N: Mitochondrial 95.8 0.032 7E-07 33.2 4.8 55 93-147 1-57 (76)
154 cd06409 PB1_MUG70 The MUG70 pr 95.8 0.038 8.3E-07 33.7 5.2 43 80-122 4-49 (86)
155 cd06406 PB1_P67 A PB1 domain i 95.6 0.09 1.9E-06 31.5 6.1 38 88-125 12-49 (80)
156 KOG4261 Talin [Cytoskeleton] 95.5 0.077 1.7E-06 44.4 7.5 101 10-113 12-121 (1003)
157 PF14836 Ubiquitin_3: Ubiquiti 95.5 0.18 3.8E-06 30.9 7.2 63 11-74 14-82 (88)
158 PRK06488 sulfur carrier protei 95.4 0.14 3.1E-06 29.2 6.5 64 1-75 1-64 (65)
159 PRK08364 sulfur carrier protei 95.3 0.14 2.9E-06 29.9 6.4 53 12-73 15-67 (70)
160 PRK08364 sulfur carrier protei 95.3 0.28 6.1E-06 28.5 8.0 56 88-152 15-70 (70)
161 PF11620 GABP-alpha: GA-bindin 95.3 0.09 2E-06 31.7 5.4 61 12-72 4-64 (88)
162 PRK06488 sulfur carrier protei 95.3 0.18 4E-06 28.8 6.7 60 85-152 6-65 (65)
163 cd00565 ThiS ThiaminS ubiquiti 95.1 0.16 3.4E-06 29.1 6.1 61 85-152 5-65 (65)
164 PF10790 DUF2604: Protein of U 95.1 0.18 3.9E-06 28.8 5.9 66 85-150 4-73 (76)
165 PF15044 CLU_N: Mitochondrial 95.0 0.031 6.6E-07 33.3 3.0 57 17-73 1-59 (76)
166 cd00754 MoaD Ubiquitin domain 94.9 0.14 3E-06 30.3 5.8 60 11-75 16-79 (80)
167 TIGR01683 thiS thiamine biosyn 94.8 0.27 5.8E-06 28.0 6.4 61 85-152 4-64 (64)
168 smart00666 PB1 PB1 domain. Pho 94.7 0.27 5.8E-06 29.2 6.6 45 2-47 3-47 (81)
169 PF12754 Blt1: Cell-cycle cont 94.7 0.0088 1.9E-07 44.7 0.0 61 2-62 80-160 (309)
170 cd01760 RBD Ubiquitin-like dom 94.7 0.34 7.5E-06 28.5 6.7 44 80-123 3-46 (72)
171 PF14836 Ubiquitin_3: Ubiquiti 94.2 0.59 1.3E-05 28.6 7.3 65 87-152 14-84 (88)
172 smart00455 RBD Raf-like Ras-bi 94.2 0.24 5.1E-06 29.0 5.3 44 80-123 3-46 (70)
173 PF10790 DUF2604: Protein of U 93.8 0.4 8.6E-06 27.4 5.5 66 8-73 3-72 (76)
174 PF02597 ThiS: ThiS family; I 93.8 0.28 6.1E-06 28.7 5.3 63 88-152 13-77 (77)
175 cd06408 PB1_NoxR The PB1 domai 93.8 0.56 1.2E-05 28.6 6.5 53 2-58 4-56 (86)
176 smart00295 B41 Band 4.1 homolo 93.7 1 2.2E-05 31.4 9.0 73 76-148 3-83 (207)
177 PLN02799 Molybdopterin synthas 93.7 0.31 6.8E-06 29.1 5.4 70 1-75 2-81 (82)
178 cd06407 PB1_NLP A PB1 domain i 93.4 0.46 1E-05 28.7 5.7 64 85-148 8-81 (82)
179 PF02597 ThiS: ThiS family; I 93.3 0.72 1.6E-05 26.9 6.6 62 12-75 13-76 (77)
180 KOG0012 DNA damage inducible p 93.2 0.14 3.1E-06 39.1 4.0 75 1-75 1-79 (380)
181 PRK07440 hypothetical protein; 93.1 0.8 1.7E-05 26.7 6.4 61 85-152 10-70 (70)
182 COG2104 ThiS Sulfur transfer p 93.1 0.94 2E-05 26.3 6.5 60 86-152 9-68 (68)
183 PRK05659 sulfur carrier protei 93.1 0.87 1.9E-05 25.9 6.4 61 85-152 6-66 (66)
184 cd01760 RBD Ubiquitin-like dom 93.0 0.55 1.2E-05 27.6 5.5 45 3-47 2-46 (72)
185 TIGR01682 moaD molybdopterin c 93.0 1.1 2.4E-05 26.6 7.1 60 88-152 17-80 (80)
186 PLN02799 Molybdopterin synthas 92.9 0.71 1.5E-05 27.6 6.2 61 87-152 19-82 (82)
187 smart00666 PB1 PB1 domain. Pho 92.8 0.64 1.4E-05 27.5 5.9 40 85-124 9-48 (81)
188 TIGR01687 moaD_arch MoaD famil 92.7 0.93 2E-05 27.4 6.6 62 87-152 16-88 (88)
189 PRK06083 sulfur carrier protei 92.7 0.87 1.9E-05 27.6 6.2 61 85-152 24-84 (84)
190 PRK05863 sulfur carrier protei 92.5 0.92 2E-05 25.9 6.0 60 85-152 6-65 (65)
191 smart00455 RBD Raf-like Ras-bi 92.3 0.84 1.8E-05 26.6 5.6 45 3-47 2-46 (70)
192 PF14453 ThiS-like: ThiS-like 92.3 1.1 2.3E-05 25.1 5.7 54 1-70 1-54 (57)
193 PRK05659 sulfur carrier protei 92.0 1.4 2.9E-05 25.1 6.4 64 1-74 1-64 (66)
194 PRK07696 sulfur carrier protei 91.9 1.5 3.2E-05 25.3 6.5 61 85-152 6-67 (67)
195 TIGR01682 moaD molybdopterin c 91.9 1.3 2.7E-05 26.3 6.3 59 12-75 17-79 (80)
196 cd06411 PB1_p51 The PB1 domain 91.8 1.2 2.6E-05 26.6 5.9 35 12-46 8-42 (78)
197 PRK05863 sulfur carrier protei 91.7 1.3 2.8E-05 25.3 5.9 63 1-74 1-63 (65)
198 PRK08053 sulfur carrier protei 91.6 1.6 3.4E-05 25.0 6.6 61 85-152 6-66 (66)
199 PF02196 RBD: Raf-like Ras-bin 91.5 0.95 2.1E-05 26.5 5.3 45 79-123 3-47 (71)
200 TIGR01687 moaD_arch MoaD famil 91.2 2.2 4.7E-05 25.8 7.0 61 11-75 16-87 (88)
201 smart00295 B41 Band 4.1 homolo 91.2 2.3 4.9E-05 29.6 8.0 61 2-62 5-72 (207)
202 PF00564 PB1: PB1 domain; Int 91.0 1.4 3E-05 26.2 5.9 44 3-47 4-48 (84)
203 KOG2982 Uncharacterized conser 90.7 0.5 1.1E-05 35.9 4.3 54 92-145 353-414 (418)
204 KOG4250 TANK binding protein k 90.7 0.72 1.6E-05 38.5 5.6 47 3-49 316-363 (732)
205 KOG2086 Protein tyrosine phosp 90.7 0.71 1.5E-05 35.7 5.2 66 2-67 307-376 (380)
206 cd00565 ThiS ThiaminS ubiquiti 90.5 1.4 2.9E-05 25.1 5.3 60 9-75 5-64 (65)
207 cd05992 PB1 The PB1 domain is 90.0 2.6 5.6E-05 24.8 6.5 45 2-47 2-47 (81)
208 TIGR01683 thiS thiamine biosyn 89.9 2.1 4.5E-05 24.3 5.7 60 9-75 4-63 (64)
209 cd01818 TIAM1_RBD Ubiquitin do 89.9 1.4 3E-05 26.1 4.8 49 81-129 4-52 (77)
210 PF10209 DUF2340: Uncharacteri 89.5 0.96 2.1E-05 29.4 4.4 55 93-147 22-107 (122)
211 cd06396 PB1_NBR1 The PB1 domai 89.5 1.9 4.1E-05 26.0 5.4 35 2-37 2-38 (81)
212 cd06411 PB1_p51 The PB1 domain 89.4 0.93 2E-05 27.0 4.0 37 88-124 8-44 (78)
213 KOG2086 Protein tyrosine phosp 89.3 1 2.2E-05 34.9 5.1 67 77-143 306-376 (380)
214 PF14453 ThiS-like: ThiS-like 89.0 1.9 4.1E-05 24.1 4.8 48 90-148 9-56 (57)
215 TIGR02958 sec_mycoba_snm4 secr 88.8 1.8 3.9E-05 34.6 6.5 72 2-74 4-82 (452)
216 PF08337 Plexin_cytopl: Plexin 88.6 2.1 4.5E-05 35.0 6.6 64 11-74 202-291 (539)
217 PRK06944 sulfur carrier protei 88.5 3 6.5E-05 23.5 6.8 60 85-152 6-65 (65)
218 PF02196 RBD: Raf-like Ras-bin 88.4 3.5 7.5E-05 24.1 7.6 52 3-54 3-56 (71)
219 KOG2689 Predicted ubiquitin re 88.1 2 4.3E-05 31.9 5.7 69 76-144 210-283 (290)
220 PRK06083 sulfur carrier protei 87.9 3.7 8.1E-05 24.9 6.0 59 9-74 24-82 (84)
221 KOG4572 Predicted DNA-binding 87.8 1.4 3E-05 37.6 5.3 62 85-146 3-68 (1424)
222 cd01787 GRB7_RA RA (RAS-associ 87.4 3.4 7.4E-05 25.1 5.6 40 3-42 5-44 (85)
223 PF14451 Ub-Mut7C: Mut7-C ubiq 87.1 4.6 0.0001 24.3 6.1 52 86-146 22-74 (81)
224 cd06408 PB1_NoxR The PB1 domai 87.1 4.4 9.4E-05 24.7 5.9 46 85-133 10-55 (86)
225 cd06398 PB1_Joka2 The PB1 doma 86.9 2.9 6.3E-05 25.7 5.2 65 85-149 8-88 (91)
226 PRK06944 sulfur carrier protei 86.8 3.9 8.5E-05 23.0 6.7 64 1-75 1-64 (65)
227 KOG4250 TANK binding protein k 86.8 3.5 7.5E-05 34.7 7.0 41 85-125 323-363 (732)
228 cd06396 PB1_NBR1 The PB1 domai 86.5 3.1 6.6E-05 25.1 5.0 36 84-121 7-44 (81)
229 cd01775 CYR1_RA Ubiquitin doma 86.2 6.1 0.00013 24.6 6.4 68 3-70 5-85 (97)
230 cd01787 GRB7_RA RA (RAS-associ 86.2 2.8 6E-05 25.5 4.7 67 78-144 4-81 (85)
231 PF00564 PB1: PB1 domain; Int 86.1 5.1 0.00011 23.6 6.2 39 85-123 9-48 (84)
232 KOG2982 Uncharacterized conser 86.1 1.9 4.1E-05 32.9 4.8 55 15-69 352-414 (418)
233 KOG0012 DNA damage inducible p 85.9 1.4 3.1E-05 33.9 4.1 61 85-145 11-73 (380)
234 cd05992 PB1 The PB1 domain is 85.8 3.7 8.1E-05 24.1 5.3 40 85-124 8-48 (81)
235 PRK08053 sulfur carrier protei 85.6 4.9 0.00011 22.9 7.0 64 1-74 1-64 (66)
236 PF00788 RA: Ras association ( 85.4 5.5 0.00012 23.8 6.1 41 3-43 5-51 (93)
237 cd01777 SNX27_RA Ubiquitin dom 85.4 2.2 4.9E-05 26.0 4.1 41 77-117 2-42 (87)
238 PRK07696 sulfur carrier protei 85.3 5.2 0.00011 23.0 6.6 64 1-74 1-65 (67)
239 cd06410 PB1_UP2 Uncharacterize 85.3 6.1 0.00013 24.6 6.1 39 6-45 18-56 (97)
240 PF10209 DUF2340: Uncharacteri 85.2 1.9 4E-05 28.0 3.9 55 17-71 22-107 (122)
241 KOG0007 Splicing factor 3a, su 85.1 0.35 7.6E-06 37.2 0.6 49 8-56 290-339 (341)
242 PTZ00380 microtubule-associate 84.8 1.4 3E-05 28.6 3.2 45 91-135 45-89 (121)
243 PRK07440 hypothetical protein; 84.2 6.2 0.00013 22.9 6.3 59 9-74 10-68 (70)
244 cd06398 PB1_Joka2 The PB1 doma 84.1 7.6 0.00016 23.9 7.2 44 3-47 3-52 (91)
245 cd06410 PB1_UP2 Uncharacterize 83.7 5.3 0.00011 24.9 5.3 44 82-126 18-63 (97)
246 TIGR02958 sec_mycoba_snm4 secr 83.5 7.3 0.00016 31.3 7.4 69 79-148 5-80 (452)
247 PF14533 USP7_C2: Ubiquitin-sp 82.9 1.4 3.1E-05 31.5 3.0 30 10-39 132-161 (213)
248 KOG3439 Protein conjugation fa 82.7 6.3 0.00014 25.1 5.3 37 13-49 47-83 (116)
249 PRK11840 bifunctional sulfur c 82.5 7.3 0.00016 29.8 6.6 61 85-152 6-66 (326)
250 PF02017 CIDE-N: CIDE-N domain 81.8 6.5 0.00014 23.5 5.0 48 97-147 21-70 (78)
251 cd01777 SNX27_RA Ubiquitin dom 81.6 5.6 0.00012 24.3 4.7 41 2-42 3-43 (87)
252 cd01764 Urm1 Urm1-like ubuitin 81.3 3.4 7.4E-05 25.5 3.8 57 91-152 23-94 (94)
253 PF14451 Ub-Mut7C: Mut7-C ubiq 81.0 7.3 0.00016 23.4 5.1 53 10-71 22-75 (81)
254 KOG2689 Predicted ubiquitin re 80.7 6.1 0.00013 29.4 5.5 68 2-69 212-284 (290)
255 PTZ00380 microtubule-associate 80.3 2.1 4.6E-05 27.8 2.7 46 13-58 43-88 (121)
256 cd01817 RGS12_RBD Ubiquitin do 79.9 10 0.00022 22.4 7.2 44 81-124 4-47 (73)
257 cd01818 TIAM1_RBD Ubiquitin do 79.6 10 0.00023 22.5 5.4 42 4-45 3-44 (77)
258 cd01768 RA RA (Ras-associating 79.5 11 0.00023 22.5 6.1 28 10-37 12-39 (87)
259 cd01817 RGS12_RBD Ubiquitin do 79.5 10 0.00022 22.3 5.7 43 5-47 4-46 (73)
260 cd01775 CYR1_RA Ubiquitin doma 79.2 13 0.00028 23.2 6.0 43 78-120 4-47 (97)
261 PF08337 Plexin_cytopl: Plexin 79.0 6 0.00013 32.4 5.5 64 86-149 201-290 (539)
262 cd01768 RA RA (Ras-associating 78.4 10 0.00023 22.6 5.4 35 86-120 12-48 (87)
263 PF00788 RA: Ras association ( 77.7 9.8 0.00021 22.7 5.2 32 88-119 18-51 (93)
264 PF00276 Ribosomal_L23: Riboso 77.3 8 0.00017 23.7 4.6 40 11-50 21-61 (91)
265 smart00144 PI3K_rbd PI3-kinase 77.1 16 0.00034 23.1 8.4 71 3-73 20-105 (108)
266 PF14732 UAE_UbL: Ubiquitin/SU 77.0 9.4 0.0002 23.2 4.8 51 96-146 8-67 (87)
267 COG5100 NPL4 Nuclear pore prot 77.0 11 0.00023 29.9 6.0 71 1-72 1-79 (571)
268 COG2104 ThiS Sulfur transfer p 77.0 12 0.00026 21.7 6.3 64 2-73 2-65 (68)
269 PRK11840 bifunctional sulfur c 76.9 11 0.00025 28.8 6.1 66 1-76 1-66 (326)
270 PRK05738 rplW 50S ribosomal pr 76.9 7.2 0.00016 24.0 4.3 40 10-49 20-60 (92)
271 TIGR03636 L23_arch archaeal ri 76.6 7.3 0.00016 23.2 4.1 33 11-43 15-47 (77)
272 KOG2561 Adaptor protein NUB1, 75.8 1.8 3.9E-05 34.4 1.7 59 14-72 53-111 (568)
273 PF00276 Ribosomal_L23: Riboso 75.4 8.1 0.00018 23.7 4.3 40 86-125 20-60 (91)
274 PF11069 DUF2870: Protein of u 75.0 5.2 0.00011 24.9 3.2 36 118-153 3-39 (98)
275 PF02505 MCR_D: Methyl-coenzym 74.3 11 0.00023 25.6 4.8 45 12-60 76-121 (153)
276 TIGR03260 met_CoM_red_D methyl 74.0 11 0.00024 25.4 4.8 45 12-60 75-119 (150)
277 PF08825 E2_bind: E2 binding d 73.9 17 0.00037 22.0 5.8 57 15-72 1-71 (84)
278 PRK14548 50S ribosomal protein 73.9 9 0.00019 23.2 4.1 34 10-43 21-54 (84)
279 PF03671 Ufm1: Ubiquitin fold 73.6 16 0.00034 21.5 5.1 58 89-146 18-76 (76)
280 smart00314 RA Ras association 73.5 17 0.00037 21.8 6.2 30 10-39 15-44 (90)
281 KOG2507 Ubiquitin regulatory p 72.9 9.2 0.0002 30.4 4.8 76 75-150 313-393 (506)
282 PF02192 PI3K_p85B: PI3-kinase 72.8 6.7 0.00015 23.4 3.3 23 13-35 2-24 (78)
283 PF12436 USP7_ICP0_bdg: ICP0-b 71.7 15 0.00032 27.0 5.6 35 10-44 189-223 (249)
284 KOG3439 Protein conjugation fa 71.1 22 0.00048 22.7 5.4 36 89-124 47-82 (116)
285 PF14847 Ras_bdg_2: Ras-bindin 70.5 24 0.00053 22.3 6.0 36 3-38 3-38 (105)
286 KOG2561 Adaptor protein NUB1, 70.3 1.3 2.8E-05 35.3 -0.2 57 91-147 54-110 (568)
287 PF02991 Atg8: Autophagy prote 70.1 12 0.00027 23.6 4.2 46 90-135 36-82 (104)
288 cd01766 Ufm1 Urm1-like ubiquit 69.8 20 0.00044 21.1 6.2 62 90-151 19-81 (82)
289 cd06397 PB1_UP1 Uncharacterize 69.3 16 0.00035 21.9 4.3 39 85-123 8-46 (82)
290 smart00314 RA Ras association 69.1 22 0.00048 21.3 5.5 36 85-120 14-51 (90)
291 COG0089 RplW Ribosomal protein 68.7 16 0.00034 22.7 4.3 33 10-42 21-53 (94)
292 PF10787 YfmQ: Uncharacterised 67.9 22 0.00048 23.8 5.1 90 16-105 20-123 (149)
293 COG5100 NPL4 Nuclear pore prot 67.6 28 0.00061 27.6 6.4 69 78-147 2-78 (571)
294 PF09469 Cobl: Cordon-bleu ubi 67.4 3.8 8.3E-05 24.4 1.4 35 105-139 2-39 (79)
295 cd01611 GABARAP Ubiquitin doma 66.9 14 0.00031 23.6 4.1 59 90-148 44-106 (112)
296 KOG4598 Putative ubiquitin-spe 66.8 11 0.00024 32.1 4.3 58 88-147 878-941 (1203)
297 PRK05738 rplW 50S ribosomal pr 66.6 20 0.00044 22.0 4.6 39 86-124 20-59 (92)
298 cd01776 Rin1_RA Ubiquitin doma 66.1 17 0.00038 21.9 4.0 42 88-129 15-61 (87)
299 PRK11130 moaD molybdopterin sy 66.0 25 0.00055 20.8 6.8 52 96-152 25-81 (81)
300 KOG4598 Putative ubiquitin-spe 65.3 21 0.00046 30.5 5.6 97 12-110 878-992 (1203)
301 KOG4572 Predicted DNA-binding 65.2 10 0.00022 32.8 3.9 52 9-60 3-56 (1424)
302 smart00144 PI3K_rbd PI3-kinase 64.6 33 0.00072 21.7 7.1 65 86-150 28-106 (108)
303 cd01611 GABARAP Ubiquitin doma 64.2 15 0.00033 23.5 3.8 44 15-58 45-89 (112)
304 PF02991 Atg8: Autophagy prote 64.2 16 0.00034 23.1 3.8 44 15-58 37-81 (104)
305 CHL00030 rpl23 ribosomal prote 64.2 16 0.00036 22.6 3.8 33 10-42 19-51 (93)
306 PF06622 SepQ: SepQ protein; 64.1 56 0.0012 24.1 8.9 84 17-102 137-223 (305)
307 smart00266 CAD Domains present 64.1 21 0.00045 21.1 4.1 38 96-133 18-57 (74)
308 smart00143 PI3K_p85B PI3-kinas 63.7 11 0.00023 22.6 2.9 23 13-35 2-24 (78)
309 PF08783 DWNN: DWNN domain; I 63.6 28 0.00061 20.5 5.8 33 4-36 2-36 (74)
310 KOG0007 Splicing factor 3a, su 62.2 3.9 8.5E-05 31.5 1.0 50 83-132 289-339 (341)
311 PF00794 PI3K_rbd: PI3-kinase 62.2 36 0.00078 21.2 7.7 70 2-71 18-101 (106)
312 cd01615 CIDE_N CIDE_N domain, 62.2 23 0.0005 21.2 4.1 38 96-133 20-59 (78)
313 PF11834 DUF3354: Domain of un 61.9 12 0.00026 21.8 2.8 43 97-145 26-68 (69)
314 PF06234 TmoB: Toluene-4-monoo 61.8 34 0.00073 20.8 5.6 59 90-148 18-84 (85)
315 PF14847 Ras_bdg_2: Ras-bindin 61.5 39 0.00084 21.4 6.1 36 79-114 3-38 (105)
316 PRK08453 fliD flagellar cappin 59.9 44 0.00095 28.4 6.7 86 8-93 135-236 (673)
317 KOG2507 Ubiquitin regulatory p 58.2 23 0.0005 28.3 4.5 82 2-85 316-402 (506)
318 KOG4146 Ubiquitin-like protein 53.3 52 0.0011 20.4 7.5 82 70-152 8-101 (101)
319 PF01376 Enterotoxin_b: Heat-l 52.9 24 0.00052 21.2 3.0 31 3-33 38-68 (102)
320 KOG1364 Predicted ubiquitin re 52.8 14 0.00031 28.5 2.6 65 2-66 279-349 (356)
321 TIGR03636 L23_arch archaeal ri 52.7 41 0.00088 20.0 4.1 35 86-120 14-48 (77)
322 cd06536 CIDE_N_ICAD CIDE_N dom 52.6 37 0.0008 20.4 3.8 38 96-133 20-61 (80)
323 PRK01777 hypothetical protein; 52.4 54 0.0012 20.3 7.0 53 88-149 18-77 (95)
324 PRK12280 rplW 50S ribosomal pr 51.7 45 0.00097 22.8 4.6 39 10-48 22-61 (158)
325 cd06539 CIDE_N_A CIDE_N domain 51.3 40 0.00088 20.1 3.8 38 96-133 20-59 (78)
326 cd01766 Ufm1 Urm1-like ubiquit 50.9 50 0.0011 19.5 5.4 62 13-74 18-80 (82)
327 PF00794 PI3K_rbd: PI3-kinase 50.0 61 0.0013 20.2 6.3 72 77-148 17-102 (106)
328 cd06397 PB1_UP1 Uncharacterize 49.3 57 0.0012 19.6 5.8 43 3-46 3-45 (82)
329 PF09138 Urm1: Urm1 (Ubiquitin 49.0 30 0.00064 21.6 3.2 79 70-152 3-96 (96)
330 cd01612 APG12_C Ubiquitin-like 48.0 62 0.0013 19.6 4.5 35 14-48 19-53 (87)
331 PRK14548 50S ribosomal protein 48.0 52 0.0011 19.9 4.1 35 86-120 21-55 (84)
332 cd01666 TGS_DRG_C TGS_DRG_C: 47.1 59 0.0013 19.1 4.5 34 1-34 2-38 (75)
333 KOG2660 Locus-specific chromos 45.7 23 0.0005 27.1 2.7 47 89-135 166-214 (331)
334 cd06538 CIDE_N_FSP27 CIDE_N do 45.6 58 0.0013 19.5 3.9 37 96-133 20-58 (79)
335 cd01776 Rin1_RA Ubiquitin doma 45.5 68 0.0015 19.4 4.4 43 11-53 14-61 (87)
336 CHL00030 rpl23 ribosomal prote 45.3 60 0.0013 20.1 4.1 39 86-124 19-58 (93)
337 PF03931 Skp1_POZ: Skp1 family 44.7 24 0.00051 19.7 2.1 32 1-32 1-32 (62)
338 cd05736 Ig2_Follistatin_like S 44.6 42 0.00091 19.0 3.3 20 108-127 6-25 (76)
339 PF10407 Cytokin_check_N: Cdc1 44.5 66 0.0014 18.9 6.4 25 11-35 3-27 (73)
340 PTZ00191 60S ribosomal protein 44.5 50 0.0011 22.2 3.9 33 10-42 82-114 (145)
341 PF13699 DUF4157: Domain of un 44.4 46 0.001 19.7 3.5 46 100-145 4-49 (79)
342 PF04023 FeoA: FeoA domain; I 44.1 38 0.00082 19.3 3.1 37 54-91 26-62 (74)
343 PF04110 APG12: Ubiquitin-like 44.0 74 0.0016 19.4 4.6 36 13-48 18-53 (87)
344 COG0299 PurN Folate-dependent 43.6 54 0.0012 23.3 4.1 55 63-123 132-187 (200)
345 COG0089 RplW Ribosomal protein 42.0 81 0.0017 19.6 4.3 61 85-145 20-90 (94)
346 KOG3483 Uncharacterized conser 41.7 75 0.0016 18.8 5.1 62 91-152 31-93 (94)
347 PF04126 Cyclophil_like: Cyclo 41.5 27 0.0006 22.5 2.3 29 1-30 1-29 (120)
348 PF02824 TGS: TGS domain; Int 40.8 65 0.0014 17.8 3.6 58 3-69 1-58 (60)
349 PF13180 PDZ_2: PDZ domain; PD 39.6 75 0.0016 18.4 3.9 42 108-149 28-71 (82)
350 KOG3076 5'-phosphoribosylglyci 39.6 57 0.0012 23.2 3.7 22 90-111 161-182 (206)
351 KOG3391 Transcriptional co-rep 39.3 32 0.0007 22.9 2.3 27 124-150 112-138 (151)
352 KOG2660 Locus-specific chromos 39.2 25 0.00054 26.9 2.1 47 13-59 166-214 (331)
353 PF08299 Bac_DnaA_C: Bacterial 38.0 17 0.00036 21.0 0.8 20 98-117 1-20 (70)
354 cd01782 AF6_RA_repeat1 Ubiquit 38.0 1.1E+02 0.0024 19.6 6.2 37 1-37 24-62 (112)
355 PRK11872 antC anthranilate dio 37.8 1.8E+02 0.004 22.2 9.1 25 2-26 4-28 (340)
356 PF11816 DUF3337: Domain of un 37.6 91 0.002 23.9 5.0 59 14-72 251-327 (331)
357 cd06537 CIDE_N_B CIDE_N domain 37.6 88 0.0019 18.8 3.8 37 96-133 20-58 (81)
358 PF11816 DUF3337: Domain of un 36.4 1.5E+02 0.0033 22.7 6.1 62 90-151 251-330 (331)
359 PRK12280 rplW 50S ribosomal pr 35.1 99 0.0021 21.2 4.3 39 86-124 22-61 (158)
360 COG4055 McrD Methyl coenzyme M 34.9 1.5E+02 0.0031 20.2 5.1 49 12-65 84-133 (165)
361 cd06404 PB1_aPKC PB1 domain is 34.5 1.1E+02 0.0023 18.6 5.5 38 9-46 8-46 (83)
362 PF06234 TmoB: Toluene-4-monoo 34.5 1.1E+02 0.0024 18.6 6.6 59 13-71 17-83 (85)
363 PF02563 Poly_export: Polysacc 33.7 44 0.00096 19.7 2.2 55 55-111 7-68 (82)
364 KOG1364 Predicted ubiquitin re 33.7 55 0.0012 25.4 3.1 65 78-142 279-349 (356)
365 cd01816 Raf_RBD Ubiquitin doma 33.3 1.1E+02 0.0023 18.1 4.7 40 3-42 2-41 (74)
366 cd05762 Ig8_MLCK Eighth immuno 31.9 68 0.0015 19.5 3.0 18 111-128 26-43 (98)
367 PF08756 YfkB: YfkB-like domai 30.8 1E+02 0.0022 20.8 3.6 83 19-103 11-100 (153)
368 KOG1654 Microtubule-associated 30.6 88 0.0019 20.1 3.2 44 90-133 48-92 (116)
369 COG1918 FeoA Fe2+ transport sy 30.4 54 0.0012 19.3 2.2 23 130-152 25-47 (75)
370 cd01783 DAGK_delta_RA Ubiquiti 30.2 1.4E+02 0.0031 18.6 4.1 32 89-120 19-53 (97)
371 cd05748 Ig_Titin_like Immunogl 30.1 76 0.0017 17.7 2.8 20 109-128 8-27 (74)
372 cd05864 Ig2_VEGFR-2 Second imm 29.5 73 0.0016 18.1 2.6 22 108-129 6-27 (70)
373 PF09358 UBA_e1_C: Ubiquitin-a 29.4 1E+02 0.0022 20.1 3.5 25 15-39 37-61 (125)
374 PRK09555 feoA ferrous iron tra 29.0 66 0.0014 18.8 2.4 23 130-152 24-46 (74)
375 PF14044 NETI: NETI protein 29.0 73 0.0016 17.8 2.3 19 15-33 2-20 (57)
376 PLN02593 adrenodoxin-like ferr 29.0 1.6E+02 0.0035 18.8 4.7 29 1-29 1-29 (117)
377 COG1977 MoaD Molybdopterin con 28.6 1.3E+02 0.0029 17.8 4.5 54 95-152 26-84 (84)
378 COG1453 Predicted oxidoreducta 28.4 1.4E+02 0.003 23.7 4.5 69 85-154 142-210 (391)
379 PRK00529 elongation factor P; 28.0 1.7E+02 0.0037 20.4 4.7 44 52-95 84-127 (186)
380 smart00760 Bac_DnaA_C Bacteria 27.9 35 0.00076 18.8 1.0 20 98-117 1-20 (60)
381 PF03147 FDX-ACB: Ferredoxin-f 27.8 1.2E+02 0.0026 18.3 3.6 41 87-127 8-50 (94)
382 TIGR00038 efp translation elon 27.7 1.5E+02 0.0032 20.7 4.4 22 74-95 105-126 (184)
383 cd05746 Ig4_Peroxidasin Fourth 27.0 1.1E+02 0.0024 16.9 3.1 21 108-128 6-26 (69)
384 PRK05841 flgE flagellar hook p 27.0 86 0.0019 26.4 3.5 36 2-37 250-294 (603)
385 PTZ00490 Ferredoxin superfamil 26.9 1.4E+02 0.003 20.1 3.9 25 2-26 37-61 (143)
386 PF09631 Sen15: Sen15 protein; 26.7 73 0.0016 19.8 2.4 50 13-64 45-94 (101)
387 cd04976 Ig2_VEGFR Second immun 26.6 92 0.002 17.5 2.7 22 108-129 6-27 (71)
388 PRK02135 hypothetical protein; 26.5 86 0.0019 22.4 2.9 55 57-111 42-96 (201)
389 PRK13011 formyltetrahydrofolat 25.6 1.2E+02 0.0026 22.8 3.8 23 89-111 238-260 (286)
390 PRK08453 fliD flagellar cappin 25.5 2.7E+02 0.0059 23.9 6.1 43 85-127 136-188 (673)
391 TIGR00655 PurU formyltetrahydr 25.3 1.3E+02 0.0028 22.6 3.9 23 89-111 233-255 (280)
392 COG2080 CoxS Aerobic-type carb 25.0 1.3E+02 0.0027 20.6 3.4 28 1-29 2-29 (156)
393 cd05874 Ig6_NrCAM Sixth immuno 24.7 1.5E+02 0.0032 17.0 3.5 21 107-127 5-25 (77)
394 PF06251 Caps_synth_GfcC: Caps 24.1 1.9E+02 0.0041 20.8 4.5 84 61-147 116-203 (229)
395 PF03658 Ub-RnfH: RnfH family 24.0 1.8E+02 0.0038 17.6 4.5 57 88-149 15-74 (84)
396 PRK05841 flgE flagellar hook p 24.0 1.1E+02 0.0023 25.9 3.5 38 76-113 248-294 (603)
397 PF08154 NLE: NLE (NUC135) dom 23.8 1.5E+02 0.0032 16.7 6.1 51 2-52 3-59 (65)
398 KOG4147 Uncharacterized conser 23.7 24 0.00053 22.4 -0.1 19 128-146 93-111 (127)
399 cd01778 RASSF1_RA Ubiquitin-li 23.4 2E+02 0.0043 18.0 5.2 37 7-43 13-49 (96)
400 PF13439 Glyco_transf_4: Glyco 23.3 90 0.002 20.2 2.6 27 100-127 148-174 (177)
401 cd05857 Ig2_FGFR Second immuno 23.1 1.6E+02 0.0034 16.8 3.5 18 111-128 20-37 (85)
402 cd05852 Ig5_Contactin-1 Fifth 23.1 1.1E+02 0.0024 17.3 2.7 19 110-128 11-29 (73)
403 cd04978 Ig4_L1-NrCAM_like Four 22.8 1.4E+02 0.0031 16.5 3.1 19 110-128 11-29 (76)
404 PF14085 DUF4265: Domain of un 22.6 2.2E+02 0.0047 18.2 6.1 57 52-111 17-78 (117)
405 PF01187 MIF: Macrophage migra 22.5 1.1E+02 0.0023 19.4 2.7 24 23-46 76-99 (114)
406 PRK13552 frdB fumarate reducta 22.5 1.7E+02 0.0036 21.4 3.9 24 11-34 24-47 (239)
407 PRK13010 purU formyltetrahydro 22.4 1.5E+02 0.0032 22.4 3.7 23 89-111 242-264 (289)
408 cd05868 Ig4_NrCAM Fourth immun 21.8 1.2E+02 0.0027 17.2 2.7 21 107-127 8-28 (76)
409 cd05484 retropepsin_like_LTR_2 21.7 1.1E+02 0.0025 18.1 2.6 43 8-50 7-53 (91)
410 cd05875 Ig6_hNeurofascin_like 21.7 1.7E+02 0.0037 16.7 3.3 21 107-127 5-25 (77)
411 PF05402 PqqD: Coenzyme PQQ sy 21.6 62 0.0013 18.0 1.3 24 93-116 26-49 (68)
412 TIGR03028 EpsE polysaccharide 21.6 3.2E+02 0.007 19.7 5.3 53 58-110 1-58 (239)
413 TIGR03027 pepcterm_export puta 21.5 2.6E+02 0.0057 18.8 4.6 51 59-110 1-57 (165)
414 PF09581 Spore_III_AF: Stage I 21.5 83 0.0018 21.7 2.1 26 95-120 162-187 (188)
415 PF04921 XAP5: XAP5, circadian 21.4 2.9E+02 0.0063 20.4 4.9 58 2-59 100-167 (239)
416 PF12949 HeH: HeH/LEM domain; 21.4 70 0.0015 15.9 1.3 15 95-109 2-16 (35)
417 PF13670 PepSY_2: Peptidase pr 21.1 1.9E+02 0.0041 16.9 3.6 20 2-21 57-76 (83)
418 PF02120 Flg_hook: Flagellar h 21.1 1.9E+02 0.004 16.8 3.6 40 67-106 17-57 (85)
419 cd05747 Ig5_Titin_like M5, fif 21.0 1.4E+02 0.003 17.6 2.9 15 112-126 30-44 (92)
420 KOG3309 Ferredoxin [Energy pro 21.0 1.7E+02 0.0036 20.0 3.3 29 1-29 44-72 (159)
421 TIGR00824 EIIA-man PTS system, 20.8 2.4E+02 0.0051 17.9 4.7 35 11-45 29-64 (116)
422 PF01282 Ribosomal_S24e: Ribos 20.7 1.8E+02 0.004 17.4 3.3 26 95-120 11-36 (84)
423 COG1901 Uncharacterized conser 20.7 1.9E+02 0.0042 20.5 3.7 53 56-108 41-93 (197)
424 PF03671 Ufm1: Ubiquitin fold 20.6 2E+02 0.0043 17.0 6.4 57 13-69 18-75 (76)
425 COG5131 URM1 Ubiquitin-like pr 20.1 2.3E+02 0.005 17.5 6.2 67 86-152 17-96 (96)
426 PF07984 DUF1693: Domain of un 20.0 1E+02 0.0022 23.8 2.4 39 4-44 18-56 (320)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.91 E-value=6.5e-24 Score=134.33 Aligned_cols=96 Identities=35% Similarity=0.591 Sum_probs=91.7
Q ss_pred cccccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccC
Q 031706 57 ADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYN 136 (154)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~ 136 (154)
.-|++.+-+++++.+++.+.|.++|+...|+++.+++++++||++||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~ 87 (103)
T cd01802 8 PFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87 (103)
T ss_pred CccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcC
Confidence 34567777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEeecCC
Q 031706 137 IEGGSVLHLVLALRGG 152 (154)
Q Consensus 137 i~~~~~i~l~~~~~gg 152 (154)
|+++++|++.++++||
T Consensus 88 I~~~stL~l~~~l~GG 103 (103)
T cd01802 88 ISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCEEEEEEecCCC
Confidence 9999999999999998
No 2
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.87 E-value=6.3e-22 Score=118.65 Aligned_cols=74 Identities=28% Similarity=0.374 Sum_probs=70.3
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|.++|+. ++++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|++||
T Consensus 1 mqi~vk~--~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRA--QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEEC--CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 5678887 4688999999999999999999999999999999999999999999999999999999999999998
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.87 E-value=4.1e-22 Score=119.47 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+++++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++||++++++++++.++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 4
>PTZ00044 ubiquitin; Provisional
Probab=99.86 E-value=2.3e-21 Score=116.90 Aligned_cols=76 Identities=49% Similarity=0.800 Sum_probs=74.2
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|.++|++.+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+++++++|++.++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.86 E-value=1.4e-21 Score=117.16 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+||.. +++++++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++++++++++++++.++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999974 789999999999999999999999999999999999999999999999999999999999987754
No 6
>PTZ00044 ubiquitin; Provisional
Probab=99.86 E-value=2.2e-21 Score=116.96 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+++++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.++++|++.++..++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887653
No 7
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.86 E-value=3.5e-21 Score=115.43 Aligned_cols=74 Identities=26% Similarity=0.515 Sum_probs=72.0
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|+|++..|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|++++++++.++++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999998
No 8
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.85 E-value=7.5e-21 Score=114.58 Aligned_cols=76 Identities=63% Similarity=0.993 Sum_probs=73.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++|+++++++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998
No 9
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.85 E-value=4.5e-21 Score=115.72 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCE-EEEE-EcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~-~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+. ++++ +++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+.++++|++++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6895 8999999999999999999999999999999999999999999999999999998865
No 10
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.85 E-value=4.8e-21 Score=121.23 Aligned_cols=76 Identities=51% Similarity=0.763 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.++++|++.++..++
T Consensus 28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 11
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.85 E-value=8.4e-21 Score=113.79 Aligned_cols=74 Identities=35% Similarity=0.594 Sum_probs=71.2
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
|.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++.+
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~~ 74 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRPP 74 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998854
No 12
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.84 E-value=1.2e-20 Score=113.72 Aligned_cols=76 Identities=86% Similarity=1.265 Sum_probs=73.8
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|.+.|+..+|+++.++++++.||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++++|++|+++++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.84 E-value=1.3e-20 Score=113.49 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=72.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||++||++|++..|+|++.|+|+|+|+.|+|+.+|++|++.+|++|++..+..++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 14
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.84 E-value=6.4e-21 Score=113.44 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|+|+|++..|+.+.+++++++||++||++|++..|+|+++|+|+|.|+.|+|+.+|++||+.+|++||+..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.84 E-value=2.4e-20 Score=112.76 Aligned_cols=78 Identities=22% Similarity=0.461 Sum_probs=74.4
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGNL 154 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~~ 154 (154)
.|.++|+...|+.+.+++++++||++||++|+++.++|+++|+|+|+|+.|+|+ +|++||+++|++|+++..++||.+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~~ 78 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGLM 78 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccCC
Confidence 378999999999999999999999999999999999999999999999999998 999999999999999999999963
No 16
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.84 E-value=1.3e-20 Score=113.60 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++|++.+|++|++..+..++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 17
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.83 E-value=1.4e-20 Score=113.80 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=71.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+...|+.+++++++++||++||++|++..++|+++|+|+|.|+.|+|+ +|++||+++|++|+++....++
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999998 9999999999999999887665
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.83 E-value=1.7e-20 Score=112.38 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=70.5
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|++++|+++++++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++||+++++++++..+..++
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999887653
No 19
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.82 E-value=8.5e-20 Score=110.25 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCC--CCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+ |+++|+|+|+|+.|+|+.+|++||+++|++|++.++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999988764
No 20
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.81 E-value=8.6e-20 Score=108.81 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
|+|+|+..+|+.+++++++++||.+||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|+++++..+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998753
No 21
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.81 E-value=4.3e-20 Score=109.17 Aligned_cols=69 Identities=36% Similarity=0.587 Sum_probs=66.1
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
+.|+..+|+++++++++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+++++++||+.+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 367889999999999999999999999999999999999999999999999999999999999999875
No 22
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.81 E-value=1.8e-19 Score=108.68 Aligned_cols=74 Identities=32% Similarity=0.578 Sum_probs=69.7
Q ss_pred eeeEEeecCCce-EEEe-eCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 77 TMIKVKTLTGKE-IEID-IEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~g~~-~~~~-v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
|.|+|++..|++ +.++ +++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|+|+++++|++++|+.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 678999999997 6885 8999999999999999999999999999999999999999999999999999999863
No 23
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.80 E-value=1.1e-19 Score=107.74 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.2
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
|+|+..+|+.+++++++++||+++|++|++..|+|++.|+|+|+|+.|+|+.+|++|++++++++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 5789999999999999999999999999999999999999999999999999999999999999998764
No 24
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.80 E-value=3.4e-19 Score=106.00 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=67.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
|.+.|++..|+.+.+++++++||++||++|++..|+|+++|+|+|.|+.|+|+.+|++||+++|++|++..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 67889999999999999999999999999999999999999999999999999999999999999999864
No 25
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.80 E-value=2.6e-19 Score=105.87 Aligned_cols=69 Identities=28% Similarity=0.591 Sum_probs=66.1
Q ss_pred EEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
.|+..+|+++.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|.+|+|+++++|+++++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~~ 70 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIVN 70 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEeC
Confidence 467889999999999999999999999999999999999999999999999999999999999999874
No 26
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.80 E-value=3.2e-19 Score=107.35 Aligned_cols=70 Identities=30% Similarity=0.639 Sum_probs=67.6
Q ss_pred cCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+++++++|+++++++||+
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg~ 74 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGGR 74 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999999985
No 27
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.79 E-value=4.5e-19 Score=105.13 Aligned_cols=70 Identities=34% Similarity=0.666 Sum_probs=67.2
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
++|++..|+++.+++++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|+|+++++++++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 4688999999999999999999999999999999999999999999999999999999999999999875
No 28
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.79 E-value=2.2e-19 Score=109.12 Aligned_cols=73 Identities=32% Similarity=0.431 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEE--EEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L--~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|++..|+|+++|+| .|+|+.|+|+.+|++||+.+|++|+++++.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 7899999999999999999999999999999999999999999 889999999999999999999999998874
No 29
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.79 E-value=7.9e-19 Score=103.81 Aligned_cols=68 Identities=56% Similarity=0.962 Sum_probs=65.1
Q ss_pred EeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 6 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+.+|+.+.+++++++||.+||++|++..++|++.|+|+|+|+.|+|+.+|++|++.+|++|++..++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999998775
No 30
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.78 E-value=1.5e-18 Score=104.83 Aligned_cols=74 Identities=38% Similarity=0.698 Sum_probs=70.6
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCC--CCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
|.++|++.+|+++.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|++++|++|+++++.+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~~ 76 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSKP 76 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEecC
Confidence 678999999999999999999999999999999999 99999999999999999999999999999999998754
No 31
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.78 E-value=9e-19 Score=104.12 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
|+|+|++.+|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++||+++|++|+++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 68999999997 589999999999999999999999999999999999999999999999999999998764
No 32
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.78 E-value=1.4e-18 Score=102.78 Aligned_cols=69 Identities=52% Similarity=0.943 Sum_probs=65.8
Q ss_pred eecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 82 ~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
++.+|+.+.+++++++||++||++|++.+++|++.|+|+|+|+.|+|+.+|++|+|++|++|+++++.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999999998864
No 33
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3.7e-20 Score=113.96 Aligned_cols=77 Identities=61% Similarity=0.962 Sum_probs=74.1
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
|.++++...|+++++++.+++||..+|++|....|+|++.|+|+|+|+.|+|+.||++|+++..++|+++.+++||.
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~ 77 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI 77 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC
Confidence 35778889999999999999999999999999999999999999999999999999999999999999999999995
No 34
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.77 E-value=2.4e-18 Score=102.54 Aligned_cols=72 Identities=43% Similarity=0.667 Sum_probs=68.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
|.++|+..+|+++.+++++++||++||++|++.+|+|++.|+|.|+|+.|+|+.+|++|++++|++++++.|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 578899999999999999999999999999999999999999999999999999999999999999999864
No 35
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.76 E-value=1.6e-18 Score=103.77 Aligned_cols=71 Identities=24% Similarity=0.267 Sum_probs=63.5
Q ss_pred CEEEEEeCCCCEEE--EEEcCCCcHHHHHHHHHhHhC--CCCCceEEEEcceEeecCccccccc--cccccceeeee
Q 031706 1 MQIFVKTLTGKTIT--LEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~--~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~--i~~~~~i~l~~ 71 (154)
|.|+||+++|+.+. +++++++||.+||++|++..+ .|+++|+|+|.|+.|.|+.+|++|. +.++.+||+++
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 57999999999855 555899999999999999874 5589999999999999999999996 99999999986
No 36
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.76 E-value=3.5e-18 Score=103.81 Aligned_cols=72 Identities=29% Similarity=0.444 Sum_probs=69.6
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEE--EECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRL--IYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l--~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
|.++|+...|+++.++++++.||++||++|++..|+|+++|+| .|+|+.|+|+.+|++||+++|++|+++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 7899999999999999999999999999999999999999999 78999999999999999999999999998
No 37
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=7e-19 Score=96.99 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
|.|.|+++.|+.+.++++|+++|..+|++++++.||||.+|+|+|.|+.+.|+.+-++|++..|+.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999874
No 38
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.76 E-value=2.1e-18 Score=102.45 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.0
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecC-ccccccccccccceeee
Q 031706 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (154)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~ 70 (154)
|+|+.. +|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+ .+|++|++++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578899 899999999999999999999999999999999999999999987 58999999999999874
No 39
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.76 E-value=1.2e-17 Score=103.02 Aligned_cols=78 Identities=23% Similarity=0.492 Sum_probs=75.1
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..+.|.|+..+|+.+.+.|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+.+|+++++++|+++++++||
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 347888999999999999999999999999999999999999999999999999999999999999999999999998
No 40
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.75 E-value=2.7e-18 Score=103.35 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=65.4
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
++|+++++++++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999987653
No 41
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.74 E-value=1.1e-17 Score=99.47 Aligned_cols=70 Identities=37% Similarity=0.463 Sum_probs=65.6
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
.++|++..|+ ..+++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++||++++++|++++|
T Consensus 2 ~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 2 KVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred EEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 5778888887 489999999999999999999999999999999999999999999999999999999875
No 42
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.74 E-value=5.5e-18 Score=100.71 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 68999986 89999999999999999999999999999999999999999999999999999999998763
No 43
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.74 E-value=7.2e-18 Score=100.70 Aligned_cols=69 Identities=23% Similarity=0.427 Sum_probs=64.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE---cceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
|+|.|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|++++|+.|+++
T Consensus 1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 6788985 7889999999999999999999999999999999996 8999999999999999999999775
No 44
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3e-18 Score=112.79 Aligned_cols=77 Identities=60% Similarity=0.939 Sum_probs=74.5
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
|.|+|+...++++.+++.+++||..+|++|++.+|||+++|+++|.|+.|+|+.+|++|+|+..++|+++++++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999994
No 45
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.73 E-value=2e-17 Score=98.15 Aligned_cols=68 Identities=32% Similarity=0.588 Sum_probs=63.3
Q ss_pred eEEeec-CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCC-CcccccCCCCCCEEEEE
Q 031706 79 IKVKTL-TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD-KTARDYNIEGGSVLHLV 146 (154)
Q Consensus 79 i~v~~~-~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~-~~L~~~~i~~~~~i~l~ 146 (154)
++|++. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|++++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467888 899999999999999999999999999999999999999999987 68999999999999873
No 46
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.71 E-value=5.5e-17 Score=100.01 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=72.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|++.+|+.+.++|.+++|+..||++++++.|+|++.|+|+|+|+.|+++.|+++|++.+|++|++..+..+|
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999887654
No 47
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.2e-18 Score=106.14 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=73.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+++++...|++.+++++|++||..+|+.|....|+|++.|+|+|+|+.|+|..|+++||++..+||+++.+..++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999998876
No 48
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.69 E-value=1.1e-16 Score=95.11 Aligned_cols=70 Identities=26% Similarity=0.424 Sum_probs=65.4
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
+.+.|+.. |+.+.+++++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|++|++++|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 35778885 88999999999999999999999999999999999999999999999999999999999874
No 49
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.69 E-value=1.2e-16 Score=95.63 Aligned_cols=71 Identities=25% Similarity=0.244 Sum_probs=63.1
Q ss_pred eeeEEeecCCceE--EEeeCCcchHHHHHHHHhhhcC--CCCcceEEEECCeecCCCCcccccC--CCCCCEEEEEE
Q 031706 77 TMIKVKTLTGKEI--EIDIEPTDTIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYN--IEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~g~~~--~~~v~~~~tV~~LK~~i~~~~g--i~~~~q~l~~~g~~L~d~~~L~~~~--i~~~~~i~l~~ 147 (154)
+.+.|++++++.+ .+++++++||++||++|++..+ .|+++|+|+|+|+.|+|+.+|++|. +.++.+||++.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 6789999999884 4555899999999999998875 4589999999999999999999996 99999999974
No 50
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.1e-17 Score=108.81 Aligned_cols=77 Identities=95% Similarity=1.314 Sum_probs=74.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecce
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (154)
|+|+|+.+.|++..+++.+++||..+|++|+..+|||+++|+|+|.|+.|+|..+|+||+|+..++++++++..++.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988763
No 51
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.68 E-value=2.5e-16 Score=94.08 Aligned_cols=69 Identities=22% Similarity=0.328 Sum_probs=63.4
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEE---CCeecCCCCcccccCCCCCCEEEEEE
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY---AGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~---~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.+.|+. .|+++.+++++++||++||++|++.+|+|+++|+|+| +|+.+.|+.+|++|++++|+.|.++.
T Consensus 2 ~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 2 PVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred EEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 455665 8889999999999999999999999999999999996 89999999999999999999998874
No 52
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.67 E-value=2.5e-16 Score=91.52 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCcccccccccccc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~ 65 (154)
|+|+|+..+ +.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++|++.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 799999998 7899999999999999999999999999999999999999999999999999875
No 53
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.1e-16 Score=88.31 Aligned_cols=70 Identities=84% Similarity=1.209 Sum_probs=66.6
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
|.+.|+++.|+.+.++++++++|..+|+.++++.|+||.+|||+|.|+.+.|+.+-.+|++.-||.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 4577889999999999999999999999999999999999999999999999999999999999999874
No 54
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.64 E-value=6.3e-16 Score=117.81 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhC---CCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+||+.+|+.+.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+.+|++|+|+++++|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999888764
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.63 E-value=7.9e-16 Score=91.99 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=58.0
Q ss_pred eCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEee-cCccccccccc-cccceeeee
Q 031706 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (154)
Q Consensus 7 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~-d~~~L~~~~i~-~~~~i~l~~ 71 (154)
...|.++++++++++||++||++|++.+|+|++.|+| |.|+.|. |+.+|++||+. +|+++++.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3467899999999999999999999999999999999 9998885 66899999998 889998764
No 56
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.60 E-value=4.3e-15 Score=88.83 Aligned_cols=65 Identities=28% Similarity=0.413 Sum_probs=59.2
Q ss_pred eecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecC-CCCcccccCCC-CCCEEEEEE
Q 031706 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTARDYNIE-GGSVLHLVL 147 (154)
Q Consensus 82 ~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~-d~~~L~~~~i~-~~~~i~l~~ 147 (154)
+...|.++.+++++++||++||++|++++|+|++.|+| |.|+.|. |+.+|++|+++ +|+++++.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34578899999999999999999999999999999999 9999885 77999999998 889999875
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.59 E-value=6.4e-15 Score=85.49 Aligned_cols=64 Identities=50% Similarity=0.826 Sum_probs=59.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGS 141 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~ 141 (154)
|.+.|+..+ ..+.++++++.||++||++|++.+|+|+++|+|+|+|+.|.|+.+|++|++++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 467888888 6889999999999999999999999999999999999999999999999999875
No 58
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.57 E-value=5.3e-15 Score=87.38 Aligned_cols=53 Identities=28% Similarity=0.504 Sum_probs=49.1
Q ss_pred CcchHHHHHHHHhhhc--CCC-CcceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 95 PTDTIERIKERVEEKE--GIP-PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 95 ~~~tV~~LK~~i~~~~--gi~-~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.++||.+||++|+++. |++ +++|+|+|.|+.|+|+.+|++|+|++|++|+++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4789999999999995 574 9999999999999999999999999999999985
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.55 E-value=1.7e-14 Score=109.99 Aligned_cols=73 Identities=38% Similarity=0.724 Sum_probs=69.8
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcC---CCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG---IPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~g---i~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
|.|+||+..|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|++++.|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 67899999999999999999999999999999998 99999999999999999999999999999999998764
No 60
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.55 E-value=3.8e-15 Score=88.01 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHhHh--CCC-CCceEEEEcceEeecCccccccccccccceeeee
Q 031706 19 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 19 ~~~tV~~lK~~i~~~~--~i~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
.++||.+||++|+++. |++ +++|+|+|.|+.|+|+.+|++|||++|++||++.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 3689999999999995 575 9999999999999999999999999999999874
No 61
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.53 E-value=2.7e-14 Score=84.01 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.1
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|+..+|+.+.+.+++++||++||++|++.+|+|+++|+|.|+|+.|+|+.+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6777899999999999999999999999999999999999999999999999999999999998764
No 62
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.52 E-value=6.1e-14 Score=83.43 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC-CceEEEEcceEeecCccccccccccccceeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|+|+|+..+|+.+.+.+.+++++..|++++.+..|+|+ +..+|.|+|+.|+++.|++++++.+|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999998763
No 63
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.51 E-value=1.4e-14 Score=91.17 Aligned_cols=74 Identities=24% Similarity=0.358 Sum_probs=63.1
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCcHHHHHHHHHhHh-----CCC--CCceEEEEcceEeecCccccccc------cccccc
Q 031706 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKE-----GIP--PDQQRLIFAGKQLEDGRTLADYN------IQKEST 66 (154)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~-----~i~--~~~q~L~~~g~~L~d~~~L~~~~------i~~~~~ 66 (154)
+.|.++..+|..+ +..+++++||.+||++|++.+ ++| +++|+|+|+|+.|+|+.+|++|+ +....|
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 3577888888554 688899999999999999555 445 99999999999999999999999 666789
Q ss_pred eeeeeeee
Q 031706 67 LHLVLRLR 74 (154)
Q Consensus 67 i~l~~~~~ 74 (154)
+|+++++.
T Consensus 85 mHvvlr~~ 92 (113)
T cd01814 85 MHVVVQPP 92 (113)
T ss_pred EEEEecCC
Confidence 99998875
No 64
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.51 E-value=2.3e-14 Score=110.06 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
++|+||+.++ .+.+.|..+.||.+||+.|...+++++++++|+|.|++|+|+.+|..|||.+|.|||++++..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 4799999887 899999999999999999999999999999999999999999999999999999999999864
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.51 E-value=1.2e-13 Score=81.22 Aligned_cols=67 Identities=61% Similarity=0.999 Sum_probs=62.9
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
|+..+|+.+.+.++++.||++||++|++.+|+|+++|+|.|+|+.|+|+.+|.+|++.+++.|+++.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5566788999999999999999999999999999999999999999999999999999999999875
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.50 E-value=6e-14 Score=85.93 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=57.1
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeec-Cccccccccccccceeeeeee
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~i~l~~~~ 73 (154)
..+++|++++||++||..|.+.+++||.+|+|+|+|+.|.| .++|++||+.++++|.+.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 46789999999999999999999999999999999999865 469999999999999988754
No 67
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.47 E-value=1.3e-13 Score=86.84 Aligned_cols=75 Identities=28% Similarity=0.320 Sum_probs=62.2
Q ss_pred eeeEEeecCCceE-EEeeCCcchHHHHHHHHhhhc-----CCC--CcceEEEECCeecCCCCcccccC------CCCCCE
Q 031706 77 TMIKVKTLTGKEI-EIDIEPTDTIERIKERVEEKE-----GIP--PVQQRLIYAGKQLADDKTARDYN------IEGGSV 142 (154)
Q Consensus 77 ~~i~v~~~~g~~~-~~~v~~~~tV~~LK~~i~~~~-----gi~--~~~q~l~~~g~~L~d~~~L~~~~------i~~~~~ 142 (154)
+.+..+..+|..+ +..+++++||++||++|++.+ ++| +++|+|+|.|+.|+|++||++|+ +....+
T Consensus 5 ~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~T 84 (113)
T cd01814 5 IEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVIT 84 (113)
T ss_pred EEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceE
Confidence 3455566677654 578889999999999999555 455 99999999999999999999999 777789
Q ss_pred EEEEEeecC
Q 031706 143 LHLVLALRG 151 (154)
Q Consensus 143 i~l~~~~~g 151 (154)
+||++|...
T Consensus 85 mHvvlr~~~ 93 (113)
T cd01814 85 MHVVVQPPL 93 (113)
T ss_pred EEEEecCCC
Confidence 999998653
No 68
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.46 E-value=2e-13 Score=83.69 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=57.7
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecC-CCCcccccCCCCCCEEEEEEeec
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
...+.|++++||.+||.+|.+.+++||.+|+|.++|+.|. |++||++||+.+++.|++.+..+
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~LlideP 79 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADEP 79 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence 4568899999999999999999999999999999999886 78899999999999999988643
No 69
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.45 E-value=1.9e-13 Score=100.35 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhC--CCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+||++.|..|++++.|++||.++|.+|+...| .|++.|+|+|+|+.|.|+.++.+|++.+++.|.+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 89999999999999999999999999999999999 999999999999999999999999999999888877654
No 70
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.41 E-value=1.1e-12 Score=78.04 Aligned_cols=71 Identities=39% Similarity=0.735 Sum_probs=65.0
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCC-cceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~-~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
|.+.|+..+|+.+.+.+.+++++..|++..++..++|+ +.++|.|.|+.|+++.|++++++++|++|++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 56888899999999999999999999999999999999 999999999999999999999999999999874
No 71
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.39 E-value=2.2e-12 Score=78.85 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=58.7
Q ss_pred EEEEEeCC-CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE-Ecce-----Ee-ecCccccccccccccceeeeee
Q 031706 2 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~-g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~-----~L-~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
.|.|.+.. ....+.++++++||.+||++++..+|+||+.|+|. |.+. .| +|+.+|++|++.+|.+||+.-.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 56666643 34455669999999999999999999999999995 7776 45 5777999999999999998754
No 72
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.38 E-value=1.1e-12 Score=100.94 Aligned_cols=73 Identities=34% Similarity=0.613 Sum_probs=68.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
+.|+||+.++ .+.+.|..+.||.+||++|.+.+++|+++++|+|.||.|+|..+|..|||++|.|||++++..
T Consensus 16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 6688888877 889999999999999999999999999999999999999999999999999999999999864
No 73
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.32 E-value=1.2e-11 Score=76.25 Aligned_cols=71 Identities=27% Similarity=0.535 Sum_probs=57.3
Q ss_pred EEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc----c---eEe-ecCccccccccccccceeeee
Q 031706 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G---KQL-EDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~----g---~~L-~d~~~L~~~~i~~~~~i~l~~ 71 (154)
+|+|.+... ...+.++++++||++||.+++..+|+|++.|+|.+. + ..+ +|..+|.+||+.+|++|++.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 567776654 488999999999999999999999999999999976 1 223 467799999999999998874
Q ss_pred e
Q 031706 72 R 72 (154)
Q Consensus 72 ~ 72 (154)
.
T Consensus 83 ~ 83 (87)
T PF14560_consen 83 T 83 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 74
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.29 E-value=1.1e-11 Score=91.25 Aligned_cols=74 Identities=32% Similarity=0.632 Sum_probs=70.1
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcC--CCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~g--i~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
|.+++|++.++++.+++.+++||.++|++|+...| .|.+.|+|+|+|+.|.|+.++.+|++.+++-|-+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 57899999999999999999999999999999999 899999999999999999999999999999998888654
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.28 E-value=3.9e-11 Score=73.36 Aligned_cols=70 Identities=23% Similarity=0.411 Sum_probs=57.4
Q ss_pred eEEeecC-CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCe-----ec-CCCCcccccCCCCCCEEEEEEe
Q 031706 79 IKVKTLT-GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK-----QL-ADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 79 i~v~~~~-g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~-----~L-~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
+.|.+.. .......++++.||++||++++..+|+|++.|+|. |.++ .| +|..+|++|++++|++||+.-.
T Consensus 4 v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 4 VNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred EEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 4444432 34455669999999999999999999999999996 7777 35 6889999999999999999754
No 76
>PLN02560 enoyl-CoA reductase
Probab=99.19 E-value=5.3e-11 Score=88.92 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.1
Q ss_pred CEEEEEeCCCCEE---EEEEcCCCcHHHHHHHHHhHhCC-CCCceEEEEc---c----eEeecCccccccccccccceee
Q 031706 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 1 m~v~v~~~~g~~~---~~~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~~~---g----~~L~d~~~L~~~~i~~~~~i~l 69 (154)
|+|+|+..+|+.+ ++++++++||++||++|+++.++ ++++|+|.+. | ..|+|+.+|+++|+++|+++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999998888886 79999999999999999999986 8999999983 3 3788999999999999998755
Q ss_pred e
Q 031706 70 V 70 (154)
Q Consensus 70 ~ 70 (154)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 4
No 77
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.19 E-value=9.3e-11 Score=73.70 Aligned_cols=68 Identities=25% Similarity=0.271 Sum_probs=60.0
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCC-------CCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNI-------EGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i-------~~~~~i~l~~~~~gg 152 (154)
...++.+++.++.||.+||++|+.....||++|+|+..+..|+|++||++||+ ++.+++-+.+|...|
T Consensus 10 ~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~ 84 (119)
T cd01788 10 HKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDD 84 (119)
T ss_pred cceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCC
Confidence 44568899999999999999999999999999999966778999999999999 668888888886444
No 78
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=99.18 E-value=9.1e-11 Score=73.76 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=62.0
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCcccccccc-------ccccceeeeee
Q 031706 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-------~~~~~i~l~~~ 72 (154)
|.+++.....+ ++.+++.+++||.+||++|+.....||+.|+|+..+..|+|+++|++||+ +..+++-+.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 56777666554 47788999999999999999999999999999977789999999999999 55677777666
Q ss_pred e
Q 031706 73 L 73 (154)
Q Consensus 73 ~ 73 (154)
.
T Consensus 81 ~ 81 (119)
T cd01788 81 S 81 (119)
T ss_pred c
Confidence 4
No 79
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.18 E-value=4.3e-10 Score=66.32 Aligned_cols=74 Identities=59% Similarity=0.961 Sum_probs=68.5
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+.+....|++..+.+.+..++..+|.+|+...|+|+..|++.+.|+.|+|+.++.+|+|..++++++..+++++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~~ 75 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRGG 75 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 34556789999999999999999999999999999999999999999999999999999999999999998753
No 80
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=99.18 E-value=1.3e-10 Score=71.52 Aligned_cols=70 Identities=27% Similarity=0.480 Sum_probs=55.6
Q ss_pred eeEEeecCC--ceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEEC-C---e---ec-CCCCcccccCCCCCCEEEEEE
Q 031706 78 MIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA-G---K---QL-ADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 78 ~i~v~~~~g--~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~-g---~---~L-~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.+.|..... ......++.+.||++||++++..+|+|++.|+|.+. . . .+ +|..+|.+||+.+|++|++.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 345555444 477889999999999999999999999999999965 1 1 23 479999999999999999864
No 81
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.12 E-value=5.5e-10 Score=71.44 Aligned_cols=73 Identities=30% Similarity=0.500 Sum_probs=55.4
Q ss_pred EEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhC-------CCCCceEEEEcceEeecCcccccccccccc------ce
Q 031706 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------TL 67 (154)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~-------i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~------~i 67 (154)
.|.++..+|. .-++.+++++||++||+.|...+. ..++..||+|.|+.|+|+.+|+++.+..++ ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 5777788998 788999999999999999987652 235678999999999999999999987666 56
Q ss_pred eeeeeee
Q 031706 68 HLVLRLR 74 (154)
Q Consensus 68 ~l~~~~~ 74 (154)
|+++++.
T Consensus 84 Hlvvrp~ 90 (111)
T PF13881_consen 84 HLVVRPN 90 (111)
T ss_dssp EEEE-SS
T ss_pred EEEecCC
Confidence 6666653
No 82
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.10 E-value=8.9e-10 Score=64.92 Aligned_cols=72 Identities=83% Similarity=1.130 Sum_probs=66.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
+++....|+.+.+.+.+..++..+|.+|+...|+|++.|++.+.|+.|+|+.++.+|+|..++++++..+..
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 467778899999999999999999999999999999999999999999999999999999999999887654
No 83
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=99.07 E-value=3e-10 Score=68.55 Aligned_cols=69 Identities=29% Similarity=0.434 Sum_probs=44.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc---eEe--ecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~~L--~d~~~L~~~~i~~~~~i~l~ 70 (154)
|-|.|++.+| .+.+++++++|+.+|+++|++..++|.+.|.|+.+- ..+ .+..+|+++|+++|+.|++.
T Consensus 5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 6788999887 688899999999999999999999999999887542 344 46779999999999998764
No 84
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.6e-10 Score=94.35 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=70.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
.|.||+++.++.++.|...+||.+||+.|.++.+|+.+.|||+|.|+.|.|++++.+|++ +|-+||++-|+..+
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 488999999999999999999999999999999999999999999999999999999999 99999999986543
No 85
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.03 E-value=4.1e-09 Score=67.43 Aligned_cols=73 Identities=34% Similarity=0.531 Sum_probs=54.4
Q ss_pred eeEEeecCCc-eEEEeeCCcchHHHHHHHHhhhcC-------CCCcceEEEECCeecCCCCcccccCCCCCC------EE
Q 031706 78 MIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEG-------IPPVQQRLIYAGKQLADDKTARDYNIEGGS------VL 143 (154)
Q Consensus 78 ~i~v~~~~g~-~~~~~v~~~~tV~~LK~~i~~~~g-------i~~~~q~l~~~g~~L~d~~~L~~~~i~~~~------~i 143 (154)
.+..+..+|. ...+.+++++||++||+.|.+.+. ..++.+||+|.|+.|+|+.+|+++++..+. ++
T Consensus 4 ~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vm 83 (111)
T PF13881_consen 4 ELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVM 83 (111)
T ss_dssp EEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEE
T ss_pred EEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEE
Confidence 4445556888 778999999999999999987773 246778999999999999999999988766 57
Q ss_pred EEEEeec
Q 031706 144 HLVLALR 150 (154)
Q Consensus 144 ~l~~~~~ 150 (154)
||+++-.
T Consensus 84 Hlvvrp~ 90 (111)
T PF13881_consen 84 HLVVRPN 90 (111)
T ss_dssp EEEE-SS
T ss_pred EEEecCC
Confidence 7776543
No 86
>PLN02560 enoyl-CoA reductase
Probab=99.02 E-value=1.1e-09 Score=81.96 Aligned_cols=69 Identities=25% Similarity=0.512 Sum_probs=59.5
Q ss_pred eeeEEeecCCceE---EEeeCCcchHHHHHHHHhhhcCC-CCcceEEEEC---C----eecCCCCcccccCCCCCCEEEE
Q 031706 77 TMIKVKTLTGKEI---EIDIEPTDTIERIKERVEEKEGI-PPVQQRLIYA---G----KQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~~~g~~~---~~~v~~~~tV~~LK~~i~~~~gi-~~~~q~l~~~---g----~~L~d~~~L~~~~i~~~~~i~l 145 (154)
|.|.|+..+|+.+ +++++++.||++||++|+++.++ ++++|+|.+. | +.|.|+++|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 4577777778776 79999999999999999999986 8999999973 3 3788999999999999998765
No 87
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=99.00 E-value=3e-09 Score=61.78 Aligned_cols=72 Identities=28% Similarity=0.404 Sum_probs=63.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc---c--eEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g--~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
++|+|+..++..+++.|+|..+|..+|++|....+++- .|+|.|. | ..|.+..+|++|||-.+-.|.++.+.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 58999999999999999999999999999999999988 8999996 2 56899999999999888887776543
No 88
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.99 E-value=1.1e-09 Score=65.79 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=53.5
Q ss_pred EEEEEeCC-CCEEEEEE-cCCCcHHHHHHHHHhHhC-CCCCceEEE--EcceEeecCccccccccccccceee
Q 031706 2 QIFVKTLT-GKTITLEV-ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~-g~~~~~~v-~~~~tV~~lK~~i~~~~~-i~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~i~l 69 (154)
+|.++..+ .....+++ +++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|++||+.+|++|++
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 45555554 33322344 588999999999999876 589999996 6789999999999999999998865
No 89
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.92 E-value=2.3e-09 Score=64.70 Aligned_cols=71 Identities=27% Similarity=0.493 Sum_probs=43.9
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEEC---Ceec--CCCCcccccCCCCCCEEEEE
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA---GKQL--ADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~---g~~L--~d~~~L~~~~i~~~~~i~l~ 146 (154)
..|.+.|++.+| +..+++++++|+++|+++|++..++|...+.|..+ ..++ .++.+|+++|++.|+.||+.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 346788888777 66789999999999999999999999999888632 2245 47899999999999999874
No 90
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=6.4e-09 Score=86.37 Aligned_cols=74 Identities=36% Similarity=0.554 Sum_probs=69.8
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
.+.||+++.++.++.+...+||.++|..|.+...|+.+.||++|.|+.|.|++++.+|+| +|-+||++-|-+=|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 478999999999999999999999999999999999999999999999999999999999 99999999876544
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.85 E-value=1.2e-08 Score=61.31 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=46.7
Q ss_pred CCcchHHHHHHHHhhhcC-CCCcceEEE--ECCeecCCCCcccccCCCCCCEEEE
Q 031706 94 EPTDTIERIKERVEEKEG-IPPVQQRLI--YAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 94 ~~~~tV~~LK~~i~~~~g-i~~~~q~l~--~~g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
+++.||.+||..|++..+ +++++|+|. +.|+.|.|+.+|.+||+.+|++||+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 477899999999999876 589999986 7899999999999999999999886
No 92
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.74 E-value=4.6e-08 Score=55.32 Aligned_cols=67 Identities=46% Similarity=0.666 Sum_probs=59.7
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|+..+|....+.+.+++|+.++|+++.++.|.+++.+.|+++|..+.+...+.++++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3444688889999999999999999999999999999999999999888888899999999998763
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.72 E-value=1.2e-07 Score=53.58 Aligned_cols=64 Identities=39% Similarity=0.626 Sum_probs=58.4
Q ss_pred cCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.++....+.+.+..|+.++|+.++++.|++++.+.|.++|..+.+...+.++++.++++|++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3677888889999999999999999999999999999999999988888899999999998864
No 94
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3.2e-07 Score=56.57 Aligned_cols=77 Identities=21% Similarity=0.429 Sum_probs=71.7
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
+.+.|+..++....+.|..+.+...|+..-+++.|++.+..|+.|+|+.+.+..|-++.+..+++.|.++....||.
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 45666676788889999999999999999999999999999999999999999999999999999999999999985
No 95
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4e-07 Score=56.13 Aligned_cols=75 Identities=17% Similarity=0.442 Sum_probs=68.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
++.|+..++....+.|..+++...|+.+..+..|++.+..+++|+|+.+....|-.+++..+|+.|.+.....++
T Consensus 22 ~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 22 NLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 567777677888999999999999999999999999999999999999999999999999999999988776655
No 96
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=2.4e-08 Score=56.33 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=60.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
++.+...-|+...+...+++||+++|..|+.++|..++...|--.+....|.-+|++|.+.+|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 456666778999999999999999999999999999998877766678899999999999999877654
No 97
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=5.7e-08 Score=54.82 Aligned_cols=68 Identities=25% Similarity=0.348 Sum_probs=59.6
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
+.++..-|+...+.+.+.+||+++|+.|++.+|-.++...|.-.+....|+-+|++|.|.+|..+++.
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 34445568889999999999999999999999999999888866778899999999999999988775
No 98
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.46 E-value=1.7e-06 Score=50.41 Aligned_cols=69 Identities=23% Similarity=0.378 Sum_probs=58.6
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEEC---Ce--ecCCCCcccccCCCCCCEEEEEE
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA---GK--QLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~---g~--~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
++.|+..+.....+.|+|..+|..+|++|....+++- .|+|.|. |+ .|.+..+|++|||-.+-.|.++=
T Consensus 2 qVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 2 QVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred EEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 5677887888899999999999999999999999876 8899863 32 57899999999998888777653
No 99
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=4.1e-07 Score=70.30 Aligned_cols=71 Identities=24% Similarity=0.427 Sum_probs=64.3
Q ss_pred EEEEeCCCCEEEEE-EcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 3 IFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 3 v~v~~~~g~~~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|.|+ +.|+.+.++ ++.++|+..||+++...+|+||++|++.+.|..+.|+-.+....|++|.+++++-...
T Consensus 6 v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e 77 (473)
T KOG1872|consen 6 VIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAE 77 (473)
T ss_pred Eeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecccc
Confidence 5666 578889988 9999999999999999999999999999999999999899999999999998886543
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.4e-06 Score=63.19 Aligned_cols=73 Identities=34% Similarity=0.636 Sum_probs=62.0
Q ss_pred CEEEEEeC-CC--CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeee-eee
Q 031706 1 MQIFVKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 73 (154)
Q Consensus 1 m~v~v~~~-~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~-~~~ 73 (154)
|.+.|... .| ..+++.|+.+++|.+||+-+++..|+|+++.+++|.|+.|+++.++....+..-+.+|++ .++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 56777654 12 447889999999999999999999999999999999999999999998888778887776 444
No 101
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=98.30 E-value=6.7e-06 Score=55.60 Aligned_cols=77 Identities=27% Similarity=0.418 Sum_probs=59.4
Q ss_pred eeeEEeecCC----ceEEEeeCCcchHHHHHHHHhhhcCCCCcce-EEEE-CCeec--CCCCcccccCCCCC----CEEE
Q 031706 77 TMIKVKTLTG----KEIEIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIY-AGKQL--ADDKTARDYNIEGG----SVLH 144 (154)
Q Consensus 77 ~~i~v~~~~g----~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q-~l~~-~g~~L--~d~~~L~~~~i~~~----~~i~ 144 (154)
++|.|.+.+| .++.+.++++.||.+|+..|....++|...+ .|.. .++.+ .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 4678889898 5888999999999999999999999988884 4443 34444 45555665554433 4899
Q ss_pred EEEeecCCC
Q 031706 145 LVLALRGGN 153 (154)
Q Consensus 145 l~~~~~gg~ 153 (154)
+.++++||+
T Consensus 81 l~~rl~GGK 89 (162)
T PF13019_consen 81 LSLRLRGGK 89 (162)
T ss_pred EEEeccCCC
Confidence 999999996
No 102
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.22 E-value=2.2e-06 Score=52.33 Aligned_cols=54 Identities=26% Similarity=0.261 Sum_probs=46.7
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEE-CC-eecCCCCcccccCCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-AG-KQLADDKTARDYNIE 138 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~-~g-~~L~d~~~L~~~~i~ 138 (154)
...++.++.+++.||.+||.+++....-|+++|+|.. .. ..|+|+++|+++|..
T Consensus 10 ~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 10 HKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred cceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 3456888999999999999999999999999999985 43 478999999999653
No 103
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=98.22 E-value=2.1e-06 Score=52.41 Aligned_cols=62 Identities=29% Similarity=0.439 Sum_probs=51.4
Q ss_pred CEEEEEeCCC-CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc--eEeecCccccccccc
Q 031706 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNIQ 62 (154)
Q Consensus 1 m~v~v~~~~g-~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g--~~L~d~~~L~~~~i~ 62 (154)
|.++++.... .++.++..++.||.+||.+++....-|++.|+|+.-. +.|+|..+|++.|..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4556655544 4577899999999999999999999999999999733 678999999999863
No 104
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.19 E-value=8.8e-06 Score=46.97 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=47.0
Q ss_pred ecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEE
Q 031706 83 TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 83 ~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
..+++...+.+.++.++.++-+..++++|++++...|.|+++.++-+.++.-.|+.+|+.+++
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 357888999999999999999999999999999999999999999999999999999999875
No 105
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3.4e-06 Score=62.44 Aligned_cols=60 Identities=28% Similarity=0.620 Sum_probs=55.4
Q ss_pred ceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 031706 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
..++++|+.+.+|.+||+.++.+.|+|+++.+++|.|++|.++.++..+.+...+.++++
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 347788999999999999999999999999999999999999999999988888888877
No 106
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.9e-06 Score=64.07 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=63.4
Q ss_pred eEEeecCCceEEEe-eCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecC
Q 031706 79 IKVKTLTGKEIEID-IEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 79 i~v~~~~g~~~~~~-v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
+.|+- .|+.+.++ ++.++|+..||+++...+|+||++|++.++|+.+.|+-.+....|++|.+++|+.....
T Consensus 6 v~VKW-~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~ 78 (473)
T KOG1872|consen 6 VIVKW-GGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEA 78 (473)
T ss_pred Eeeee-cCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccccc
Confidence 44443 77788877 89999999999999999999999999999999999998899999999999999876543
No 107
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1e-05 Score=48.86 Aligned_cols=75 Identities=17% Similarity=0.379 Sum_probs=66.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
.+.|...+|..+.+.|..+++...|..+..+..|-..+..|++|+|+.++.+.+-.+++..+++.|.++....++
T Consensus 26 nLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 26 NLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred ceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 456666788999999999999999999999999999999999999999999999999999999998877655443
No 108
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=98.04 E-value=2.4e-05 Score=45.15 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=46.5
Q ss_pred eCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceee
Q 031706 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 7 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (154)
..+++.+.+.+.|++++.++-+..-+++|++++.-.|.|+++.++-+.++.-.|+.+|+++.+
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 467899999999999999999999999999999999999999999999999999999998764
No 109
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.96 E-value=3.6e-05 Score=46.36 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=47.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCc------eEEE-EcceEeecCccccccccccccceee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~------q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l 69 (154)
+|+|...+|+.+.+.++.+.+|.+|...+.+..+.+... ..|. -+|..|+++.+|+++++.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 466766556889999999999999999999988764322 2333 4588999999999999999999875
No 110
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1.9e-05 Score=47.77 Aligned_cols=77 Identities=23% Similarity=0.406 Sum_probs=69.8
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
+.+.|...+|.++.+.+..+.+...|....+++.|-..+..|+.|+|+.++-++|-.+++...++.|.++....||.
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 55666667889999999999999999999999999999999999999999999999999999999998888777773
No 111
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.85 E-value=5e-05 Score=47.44 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=44.8
Q ss_pred EEEEeCCC-CEEEEEEc--CCCcHHHHHHHHHhHhC--CCCCceEEEEcceEeecCcccccc
Q 031706 3 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 59 (154)
Q Consensus 3 v~v~~~~g-~~~~~~v~--~~~tV~~lK~~i~~~~~--i~~~~q~L~~~g~~L~d~~~L~~~ 59 (154)
|.|++.++ ..+.++++ .++||..||..|.+..+ ..-.+++|+|+|+.|.|...|+.-
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 56776663 44677777 78999999999999984 445668999999999998876654
No 112
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.85 E-value=0.0002 Score=43.23 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=57.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCc-eEEE--EcceEeecC--ccccccccccccceeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~--~~g~~L~d~--~~L~~~~i~~~~~i~l~ 70 (154)
.|.|+.++|+.+.-.+.+++||.+|.+.|......+... ..|. |-.+.+.++ .+|++.|+.+++++++.
T Consensus 8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 588999999999999999999999999999888776664 6665 445666544 59999999999988653
No 113
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.80 E-value=0.00023 Score=42.95 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=57.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcc-eEEE--ECCeecCCC--CcccccCCCCCCEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRLI--YAGKQLADD--KTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-q~l~--~~g~~L~d~--~~L~~~~i~~~~~i~l 145 (154)
..|.|+.++|+.+.-.+..++|+.+|.+-|......+... +.|. |..+.+.+. .+|.+.|+.++++|.|
T Consensus 7 ~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v 80 (82)
T PF00789_consen 7 VRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIV 80 (82)
T ss_dssp EEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEE
Confidence 5677888999999999999999999999998887776665 7776 677777643 6999999999999876
No 114
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.74 E-value=0.00027 Score=47.90 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=55.0
Q ss_pred CEEEEEeCCC----CEEEEEEcCCCcHHHHHHHHHhHhCCCCCce-EEEEc-ceEe--ecCcccccccccccc----cee
Q 031706 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKES----TLH 68 (154)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~~~-g~~L--~d~~~L~~~~i~~~~----~i~ 68 (154)
|+|+|.+.+| .++.+.+++++||.+|+..|....++|+..| .|.+. ++.+ .++..++++.-.+.+ +++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 7899999999 5888999999999999999999999999885 34443 4455 445566666544333 455
Q ss_pred eeeeeec
Q 031706 69 LVLRLRG 75 (154)
Q Consensus 69 l~~~~~~ 75 (154)
+..+..|
T Consensus 81 l~~rl~G 87 (162)
T PF13019_consen 81 LSLRLRG 87 (162)
T ss_pred EEEeccC
Confidence 5555544
No 115
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.71 E-value=0.00042 Score=41.74 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=56.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLAD---DKTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~d---~~~L~~~~i~~~~~i~l 145 (154)
..|.|+.++|+.+.-.+..++|+.+|.+-+....+.....+.|. |..+.+.+ +.+|.+.|+.+.+++.+
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 46778889999999999999999999999976667666777786 66777753 57999999988888765
No 116
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.68 E-value=0.00011 Score=44.16 Aligned_cols=67 Identities=24% Similarity=0.397 Sum_probs=46.5
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCc------ceEEE-ECCeecCCCCcccccCCCCCCEEEE
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV------QQRLI-YAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~------~q~l~-~~g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
+.|...+|+.+.+.++.+.+|++|...+.+..+.+.. ..+|. .+|..|+++.+|+++||.+|+.+++
T Consensus 5 Vtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 5 VTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 4444444688899999999999999999988876322 23454 5788999999999999999999876
No 117
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.66 E-value=0.00031 Score=42.28 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=54.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEeec---Cccccccccccccceee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l 69 (154)
+|.||.++|+.+...+..++|+.+|.+.+....+.+.....|. |-.+.+.+ +.+|.+.|+.+++++.+
T Consensus 6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 5889999999999999999999999999976666665566665 44566653 46999999988887754
No 118
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.51 E-value=0.0012 Score=39.65 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=55.2
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecCC---CCcccccCCCCCCEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLAD---DKTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~d---~~~L~~~~i~~~~~i~l 145 (154)
..|.|+.++|+.+.-.++.++|+.+|.+-|....+-+ ..+.|+ |..+.+.+ +.+|.+.|+.+.+++.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 4577888899999889999999999999998665433 556676 77887753 58999999999988865
No 119
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.0002 Score=50.18 Aligned_cols=64 Identities=28% Similarity=0.428 Sum_probs=57.3
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
.++.+.+.+..-+|+.++|.+++...|+.+..|+++|+|..+-|...|..+++..|....+.+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 4566888888999999999999999999999999999999999999999999999977655544
No 120
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.00028 Score=49.45 Aligned_cols=64 Identities=27% Similarity=0.456 Sum_probs=56.6
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
.++.+.+.+..-+|+.++|..+++..|+++..|+|+++|+.+.|...|.+|++..|....+.+.
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 4566788888899999999999999999999999999999999999999999999966555443
No 121
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.46 E-value=0.0011 Score=38.70 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=54.6
Q ss_pred EEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC-----CceEEEEcceEeecCccccccccccccceee
Q 031706 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-----~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (154)
-++..+|.++.+.++...++..|-.-+.+...++. ...+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 10 D~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 10 DFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 34566899999999999999999999988776532 3456667889999999999999999998765
No 122
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.45 E-value=0.0011 Score=39.86 Aligned_cols=67 Identities=16% Similarity=0.324 Sum_probs=53.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEeec---Cccccccccccccceee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~d---~~~L~~~~i~~~~~i~l 69 (154)
+|.|+.++|+.+.-.++.++|+.++.+.|....+-+ ....|. |-.+.+.+ +.+|.+.|+.+.+++.+
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 578999999999999999999999999998765433 335555 44566653 46999999999888865
No 123
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.37 E-value=0.0023 Score=38.64 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=59.4
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecC---CCCcccccCCCCCCEEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~---d~~~L~~~~i~~~~~i~l~~ 147 (154)
-.|.|+.++|+...-.+..++++.+|-.-+.. .|.+++.+.|+ |..+.+. .+.||.+.|+.+..++.|--
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 45788899999999999999999999999988 57888999998 6677663 35799999999999987743
No 124
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.36 E-value=0.0027 Score=38.24 Aligned_cols=70 Identities=19% Similarity=0.248 Sum_probs=58.4
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecC---CCCcccccCCCCCCEEEEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~---d~~~L~~~~i~~~~~i~l~ 146 (154)
...|.++.++|....-.+..++++.+|-.-+... |.++..++|. |..+.+. .+.+|.+.|+.+..+|.|-
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 3567888899999999999999999999999874 7788888887 7777664 3679999999999888763
No 125
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=97.32 E-value=0.00039 Score=50.04 Aligned_cols=70 Identities=29% Similarity=0.419 Sum_probs=52.1
Q ss_pred CEEEEEeCCCC-EEE-EEEcCCCcHHHHHHHHHhHh-CCCCCceEEEE----cceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGK-TIT-LEVESSDTIDNVKAKIQDKE-GIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~-~~~-~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~~----~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
|+|++.+.++. ... ...+...|+.|++.++.+.. .+.+.++++.+ .|+.+-|+.+|++|+..+|++|.+-
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 78899877653 333 56778899999997776554 56675554443 4899999999999999999877543
No 126
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.32 E-value=0.0031 Score=38.46 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=56.4
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecC--------CCCcccccCCCCCCEEEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA--------DDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~--------d~~~L~~~~i~~~~~i~l 145 (154)
...|.++.++|+.+.-.+..++|+.+|..-|.. .+..++.+.|. |..+.+. .+.||.+.|+.+...+.|
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 356788889999998899999999999999964 45566888888 4447774 367999999998888765
Q ss_pred E
Q 031706 146 V 146 (154)
Q Consensus 146 ~ 146 (154)
-
T Consensus 83 ~ 83 (85)
T cd01774 83 Q 83 (85)
T ss_pred e
Confidence 3
No 127
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.31 E-value=0.0015 Score=38.96 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=49.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEee---cCccccccccccccc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKEST 66 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~L~~~~i~~~~~ 66 (154)
+|.|+.++|+.+.-.+..++||.+|.+.|.....- .....|. |-.+.+. .+.+|++.|+.+...
T Consensus 4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~ 72 (77)
T cd01767 4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVV 72 (77)
T ss_pred EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccceE
Confidence 58899999999999999999999999999876543 3445555 3346664 467999999985443
No 128
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.30 E-value=0.0035 Score=37.35 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=50.7
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecC---CCCcccccCCCCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGS 141 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~---d~~~L~~~~i~~~~ 141 (154)
..|.|+.++|+.+.-.+..++|+.+|.+-|.....- ...+.|. |..+.+. .+.+|.+.|+.+..
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~ 71 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEV 71 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCccce
Confidence 357788899999999999999999999999765443 5566776 6667765 48899999998543
No 129
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=97.28 E-value=0.00095 Score=41.71 Aligned_cols=49 Identities=29% Similarity=0.411 Sum_probs=38.5
Q ss_pred eEEEeeC--CcchHHHHHHHHhhhcC--CCCcceEEEECCeecCCCCcccccC
Q 031706 88 EIEIDIE--PTDTIERIKERVEEKEG--IPPVQQRLIYAGKQLADDKTARDYN 136 (154)
Q Consensus 88 ~~~~~v~--~~~tV~~LK~~i~~~~g--i~~~~q~l~~~g~~L~d~~~L~~~~ 136 (154)
...+++. .+.||..||++|.+..+ ..-.+++|+|+|+.|.|+..|...-
T Consensus 13 Dl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 13 DLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred CceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhhh
Confidence 3566666 68899999999998884 3455679999999999988776543
No 130
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.26 E-value=0.0031 Score=37.87 Aligned_cols=67 Identities=13% Similarity=0.291 Sum_probs=53.0
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCC-CCcceEEE--ECCeecC-CCCcccccCCCCCCEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI-PPVQQRLI--YAGKQLA-DDKTARDYNIEGGSVL 143 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi-~~~~q~l~--~~g~~L~-d~~~L~~~~i~~~~~i 143 (154)
..|.|+.++|+.+...++.++||++|.+-+....+- ....+.|. |..+.+. ++.||.+.|+.+...+
T Consensus 5 t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 5 TSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 467888999999999999999999999999876543 23556675 6777775 4889999999875443
No 131
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.23 E-value=0.0026 Score=38.26 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=49.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCC-CCceEEE--EcceEeec-Ccccccccccccc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKES 65 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~--~~g~~L~d-~~~L~~~~i~~~~ 65 (154)
+|.|+.++|+.+.-.+..++||++|.+.|....+-+ .....|. |-.+.+.+ +.||++.|+.+..
T Consensus 6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 588999999999999999999999999999876432 2345565 45666654 6699999988644
No 132
>COG5417 Uncharacterized small protein [Function unknown]
Probab=97.16 E-value=0.0055 Score=35.87 Aligned_cols=67 Identities=19% Similarity=0.349 Sum_probs=54.5
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCC---C--cceEEEECCeecCCCCcccccCCCCCCEEEE
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP---P--VQQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~---~--~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
+-.+..+|.++.+.++...++..|-..+.+...+. . ...+..-+++.|.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 34456789999999999999999988887777642 2 2346667889999999999999999999876
No 133
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=97.15 E-value=0.01 Score=42.49 Aligned_cols=102 Identities=22% Similarity=0.322 Sum_probs=55.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCC---ceEEE--Ecce---EeecCccccccccccccceeeeeee------e---
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R--- 74 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~---~q~L~--~~g~---~L~d~~~L~~~~i~~~~~i~l~~~~------~--- 74 (154)
.+.+-++.+.||.||.+.+.++.+++.+ ..+++ ++++ .+..+..+.+. .+...+.+-.-+ .
T Consensus 35 ~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~~ 112 (213)
T PF14533_consen 35 EYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDES 112 (213)
T ss_dssp EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT-
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhccccc
Confidence 4778899999999999999999998765 33433 4454 45666677665 222222222111 0
Q ss_pred -cceeeEEeec-------CCceEEEeeCCcchHHHHHHHHhhhcCCCCc
Q 031706 75 -GGTMIKVKTL-------TGKEIEIDIEPTDTIERIKERVEEKEGIPPV 115 (154)
Q Consensus 75 -~~~~i~v~~~-------~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~ 115 (154)
+...|.|... .|-.+.+.|.+.+|+.++|++|++++|++-.
T Consensus 113 ~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 113 EGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp -TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred ccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 1233444332 3556778899999999999999999998743
No 134
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.11 E-value=0.0052 Score=37.12 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=56.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEe---ecCccccccccccccceeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L---~d~~~L~~~~i~~~~~i~l~~ 71 (154)
+|.|+.++|+...-.+..++++.+|-..+.. .|.+++...|+ |--+.+ +.+.+|.+.|+.+.+++.+.-
T Consensus 7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 5889999999999999999999999999998 57788888887 334544 334699999999999886643
No 135
>PRK06437 hypothetical protein; Provisional
Probab=97.01 E-value=0.01 Score=34.43 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+++...+++++..||.+|-+.+ ++++....+..+|+.+. .++-+++|+.|.++-..-||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 5566778888888999988754 78888888889999886 56678899999887766665
No 136
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=96.96 E-value=0.011 Score=43.33 Aligned_cols=106 Identities=17% Similarity=0.349 Sum_probs=74.1
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc------eEeecCccccccccccccceeeeeeeec-------------
Q 031706 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------- 75 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g------~~L~d~~~L~~~~i~~~~~i~l~~~~~~------------- 75 (154)
+-|+.+++|++|-..|.+..|.|++..-++|.- ..++...++....+.+|+.|.+......
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 558899999999999999999999888888752 4467888999999999999987774421
Q ss_pred -------ceeeEEeec---CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 76 -------GTMIKVKTL---TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 76 -------~~~i~v~~~---~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
.+.|.++.. .+..+.+.++...|-.+|-++|+++.+++|+..+|.
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 245555442 345788999999999999999999999999999997
No 137
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0028 Score=44.47 Aligned_cols=73 Identities=15% Similarity=0.273 Sum_probs=55.8
Q ss_pred EEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE-Ecc-----eEee-cCccccccccccccceeeeeee
Q 031706 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 2 ~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g-----~~L~-d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
+|.|.+.... ....+.+++.||.++|.+++..+|.+++.+.|. |.| ..|+ ++..|..|...+|-.||++-..
T Consensus 3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~ 82 (234)
T KOG3206|consen 3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSN 82 (234)
T ss_pred EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecC
Confidence 4555543322 245678999999999999999999999999986 544 3454 4569999999999999988654
Q ss_pred e
Q 031706 74 R 74 (154)
Q Consensus 74 ~ 74 (154)
.
T Consensus 83 ~ 83 (234)
T KOG3206|consen 83 A 83 (234)
T ss_pred c
Confidence 3
No 138
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=96.95 E-value=0.0021 Score=46.40 Aligned_cols=68 Identities=24% Similarity=0.415 Sum_probs=47.2
Q ss_pred eeEEeecCC-ceEE-EeeCCcchHHHHHHHHhhhc-CCCCcceEEE----ECCeecCCCCcccccCCCCCCEEEE
Q 031706 78 MIKVKTLTG-KEIE-IDIEPTDTIERIKERVEEKE-GIPPVQQRLI----YAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 78 ~i~v~~~~g-~~~~-~~v~~~~tV~~LK~~i~~~~-gi~~~~q~l~----~~g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
.|++.+.++ ...+ ...+.+.|+.|+++.+.++. .+.+.++++. -+|+.+-|+.+|++|+..++.+|++
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 444444433 2333 55677899999997775544 5666444443 5689999999999999999977654
No 139
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.93 E-value=0.0089 Score=36.43 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=53.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc--eEee--------cCccccccccccccceee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g--~~L~--------d~~~L~~~~i~~~~~i~l 69 (154)
+|.|+.++|+.+.-.+..++||.+|...|... +..+....|..+= +.+. .+.||++.|+.+..++.+
T Consensus 6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 68899999999999999999999999999654 4455677777543 5664 356999999998877754
No 140
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.89 E-value=0.0087 Score=36.04 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=55.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEee---cCccccccccccccceeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~L~~~~i~~~~~i~l~ 70 (154)
+|.|+.++|+...-.+..++++.+|-..+... |.++...+|. |--+.+. .+.+|.+.|+.+.+++.+-
T Consensus 6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 68899999999999999999999999999875 7777777776 3345553 3469999999988887653
No 141
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0009 Score=50.16 Aligned_cols=72 Identities=25% Similarity=0.389 Sum_probs=53.8
Q ss_pred EEEEEeCCCCE--EEEEEcCCCcHHHHHHHHHhHhC-CC-CCceEEEEcceEeecCcccccccccc--ccceeeeeee
Q 031706 2 QIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYNIQK--ESTLHLVLRL 73 (154)
Q Consensus 2 ~v~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~-i~-~~~q~L~~~g~~L~d~~~L~~~~i~~--~~~i~l~~~~ 73 (154)
.+.+|..+.+. ..+..+..+||++||..++...- -| +.+|||+|.|+.|.|...+.+.-.+. ...+|+++..
T Consensus 11 ~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcns 88 (391)
T KOG4583|consen 11 TLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNS 88 (391)
T ss_pred EEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 46778877644 55667788999999999988753 22 45799999999999999998876543 3356666654
No 142
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=96.52 E-value=0.034 Score=33.09 Aligned_cols=58 Identities=26% Similarity=0.347 Sum_probs=47.0
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC-CceEEEE----cc--eEeecCccccccccc
Q 031706 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQ 62 (154)
Q Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~----~g--~~L~d~~~L~~~~i~ 62 (154)
|+.++|...++++++++|+.+|-+.|.++.++.. +..-|.+ +| ..|+.++++.++...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 5678999999999999999999999999999763 3356777 12 568888899988766
No 143
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=96.46 E-value=0.018 Score=35.13 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=38.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC---CceEEEE
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 45 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~---~~q~L~~ 45 (154)
...++.++|+.+.+.+.|++.+.+|++.|.++.|+.. +...|.|
T Consensus 2 ~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 2 AFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred cEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 4578899999999999999999999999999999887 3555555
No 144
>PRK06437 hypothetical protein; Provisional
Probab=96.31 E-value=0.044 Score=31.75 Aligned_cols=61 Identities=16% Similarity=0.318 Sum_probs=46.1
Q ss_pred EEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
.++..+++...++++...||.+|-+. .+++++..-+..+|..+. .++-+++|++|.+..-.
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVF 64 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecc
Confidence 34443556678888899999998766 478888888889999886 56677889999776543
No 145
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=96.25 E-value=0.046 Score=32.50 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=49.5
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCC-CcceEEEE----CC--eecCCCCcccccCCCCCCEEEEEEe
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIY----AG--KQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~-~~~q~l~~----~g--~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
|..++|....+.++++.|+.+|-++|++..++. .+-.-|.+ +| .-|+.+++|.++.........+.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 456789999999999999999999999999985 33445666 22 1367788999998873444334443
No 146
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.015 Score=40.86 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=49.2
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECC-----eec-CCCCcccccCCCCCCEEEEEE
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAG-----KQL-ADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g-----~~L-~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.....+.+.|++++|.+++-.+|.+++.+.|. |.+ ..| +++..|..|...+|..||++-
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD 80 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVID 80 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEe
Confidence 34567788999999999999999999999987 554 134 467889999999999999874
No 147
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0024 Score=47.96 Aligned_cols=60 Identities=25% Similarity=0.384 Sum_probs=47.2
Q ss_pred ceeeEEeecCC--ceEEEeeCCcchHHHHHHHHhhhcCC--CCcceEEEECCeecCCCCccccc
Q 031706 76 GTMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 76 ~~~i~v~~~~g--~~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~q~l~~~g~~L~d~~~L~~~ 135 (154)
.+.+.++..+. +...+..+...||++||..++..+-- -..+|||+|.||.|.|+.+|.+.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 35566777655 45667777889999999999988752 25679999999999999988765
No 148
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=96.14 E-value=0.022 Score=34.38 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=42.3
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
+...++-..++..||..++++.++..+...+...+..|+++++|-+.+++-...+.+.+-.
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi 65 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQI 65 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEE
Confidence 3345566778999999999999999999999988888999999999999888877776543
No 149
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=95.99 E-value=0.054 Score=32.15 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=46.1
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCC----CCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGI----PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi----~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...+++++..||.+|.+.+...++- ......+..+|+... .+.-+++|+.|.++=..-||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 4567777788999999999877542 334566778898876 35578899999998887776
No 150
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=95.99 E-value=0.0018 Score=48.26 Aligned_cols=77 Identities=23% Similarity=0.508 Sum_probs=0.0
Q ss_pred eeeEEeecCCceEEEeeC---C--cchHHHHHHHHhh----------hcCCCCcceE-----EEECCeecCCCCcccccC
Q 031706 77 TMIKVKTLTGKEIEIDIE---P--TDTIERIKERVEE----------KEGIPPVQQR-----LIYAGKQLADDKTARDYN 136 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~---~--~~tV~~LK~~i~~----------~~gi~~~~q~-----l~~~g~~L~d~~~L~~~~ 136 (154)
+.|.+++..+..+.+.+. + +.+|.++|..+++ .+++|.+.++ |.|+.+++.|+++|.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 344455555554443322 2 5799999999999 8899999999 999999999999988775
Q ss_pred CC-------CCCEEEEEEeecCCC
Q 031706 137 IE-------GGSVLHLVLALRGGN 153 (154)
Q Consensus 137 i~-------~~~~i~l~~~~~gg~ 153 (154)
-. .+.++++.+...||.
T Consensus 159 ~~~~~~l~~~~~~vE~gvMVlGGa 182 (309)
T PF12754_consen 159 ADSESRLLSGGKEVEFGVMVLGGA 182 (309)
T ss_dssp ------------------------
T ss_pred hcccchhccCCceEEEEEEEECCc
Confidence 44 577888888888874
No 151
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.85 E-value=0.051 Score=32.60 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcce
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 48 (154)
++.++++++.+..+|.++|.++.++|++...|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8899999999999999999999999999999999643
No 152
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=95.81 E-value=0.1 Score=31.57 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=37.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC-CceEEEEcc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 47 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~g 47 (154)
|+|.+.. +|..+.+.++++.+..+|++.|.++.++.. ....|.|..
T Consensus 1 ~~vK~~~-~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 1 VRVKATY-GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred CEEEEEe-CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 4555653 678899999999999999999999999875 566677753
No 153
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.80 E-value=0.032 Score=33.22 Aligned_cols=55 Identities=27% Similarity=0.381 Sum_probs=45.8
Q ss_pred eCCcchHHHHHHHHhhhcC-CCCcceEEEECCeecCCCCcccccC-CCCCCEEEEEE
Q 031706 93 IEPTDTIERIKERVEEKEG-IPPVQQRLIYAGKQLADDKTARDYN-IEGGSVLHLVL 147 (154)
Q Consensus 93 v~~~~tV~~LK~~i~~~~g-i~~~~q~l~~~g~~L~d~~~L~~~~-i~~~~~i~l~~ 147 (154)
|.++++|.++++-+..... .....+.|.++|..|++...|++.. +++++.+.+.-
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 4678999999999987765 4677788999999999988888874 88899988764
No 154
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=95.78 E-value=0.038 Score=33.68 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=37.3
Q ss_pred EEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCC---cceEEEEC
Q 031706 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP---VQQRLIYA 122 (154)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~---~~q~l~~~ 122 (154)
..+.+.|+++.+.+.+++.+.+|++.|.++.|+.. ....|.|-
T Consensus 4 K~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 4 KFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred EeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 34577999999999999999999999999999876 57788774
No 155
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=95.56 E-value=0.09 Score=31.54 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=34.7
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCee
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ 125 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~ 125 (154)
++.+.+++..+..+|.++|+++.++|+++.+|.|+.+.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 78889999999999999999999999999999997653
No 156
>KOG4261 consensus Talin [Cytoskeleton]
Probab=95.52 E-value=0.077 Score=44.39 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=81.1
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhC---CCCCceEEEEc------ceEeecCccccccccccccceeeeeeeecceeeE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~~~------g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
+-..++.+.|+++|.|--..|.+++. .-++...|+.. |-+|+..++|.+|-+.+++++...-+. -.+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccce
Confidence 45578999999999998888877653 22555566542 578999999999999999998655443 3577
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCC
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~ 113 (154)
++.++|..-++.++.+.+|.+|---|+.+.||.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igIt 121 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGIT 121 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCcc
Confidence 888999888999999999999999999999873
No 157
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=95.45 E-value=0.18 Score=30.89 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE-c---c-eEee-cCccccccccccccceeeeeeee
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-A---G-KQLE-DGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~---g-~~L~-d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
..++..++..+||+.+...+.+.+.| ...-||.- . + ..|. .+.|+.+.++.+|-+|.+-.+..
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 46788899999999999999999999 44567653 2 2 3464 45699999999999886665543
No 158
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.38 E-value=0.14 Score=29.24 Aligned_cols=64 Identities=16% Similarity=0.344 Sum_probs=42.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|++ +|+.+.+ +..|+.+|.+.+ +++++...+-.++..+. .....+.-+++|+.|.+.....|
T Consensus 1 m~i~~---Ng~~~~~---~~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~G 64 (65)
T PRK06488 1 MKLFV---NGETLQT---EATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQG 64 (65)
T ss_pred CEEEE---CCeEEEc---CcCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccC
Confidence 45554 5666665 346899988765 56665556667887765 33445677889999987754443
No 159
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.34 E-value=0.14 Score=29.91 Aligned_cols=53 Identities=9% Similarity=0.153 Sum_probs=39.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
...++++.+.||.+|-+.+ ++++..-.+..+|.... .+.-+++|+.|.+....
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~V 67 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPVV 67 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEccc
Confidence 5677888899999998775 66776666778888874 35567889988776443
No 160
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=95.31 E-value=0.28 Score=28.55 Aligned_cols=56 Identities=21% Similarity=0.306 Sum_probs=43.4
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...+++++..|+.+|.+.+ ++++....+..+|+.+.. +.-+++|+.|.++-..-||
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 4567778888999998766 677777777799998853 5568899999887766665
No 161
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=95.28 E-value=0.09 Score=31.74 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=43.3
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
.+...++-..+++.||..++.+.+++-+.-.++..+..|+++++|.+.+++-...+.+.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 3456678889999999999999999999999999987899999999999987777766543
No 162
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=95.26 E-value=0.18 Score=28.79 Aligned_cols=60 Identities=12% Similarity=0.291 Sum_probs=44.1
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.+.+ + ..|+.+|.+.+ ++++....+-.+++.+. ....++.-+++|+.|.++-..-||
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEeccCC
Confidence 5666555 3 35899888765 56666666778998775 344667789999999998888777
No 163
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=95.11 E-value=0.16 Score=29.07 Aligned_cols=61 Identities=20% Similarity=0.397 Sum_probs=45.1
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+. ++++...|+.+|.+.+ ++++....+..+|+.+.. ....+.-+++|++|.++-..-||
T Consensus 5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPR-SEWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 3444 4556677999998866 467778888899987753 33455678999999998887776
No 164
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=95.06 E-value=0.18 Score=28.75 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=47.9
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhc---CCCCcceEEE-ECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKE---GIPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~---gi~~~~q~l~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
+|+...++-..+....-..++--+.+ |.|++.-.|. -+|..++-++.+.+||+.++-++++.++.-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKAG 73 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKAG 73 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeecc
Confidence 56666666666665555555544444 4688887776 578889989999999999999988877653
No 165
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.05 E-value=0.031 Score=33.31 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=43.5
Q ss_pred EcCCCcHHHHHHHHHhHhC-CCCCceEEEEcceEeecCccccccc-cccccceeeeeee
Q 031706 17 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLRL 73 (154)
Q Consensus 17 v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~~g~~L~d~~~L~~~~-i~~~~~i~l~~~~ 73 (154)
|+++++|.++++.+..... ..-....|.++|..|++...++++. +++++++.+...+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5688999999999987654 4445567889999998888888774 6777777666543
No 166
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=94.92 E-value=0.14 Score=30.32 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=42.1
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCC----CCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
....++++.+.||.+|.+.+....+- ......+..+|+..+ .+.-+++|++|.+.....|
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~G 79 (80)
T cd00754 16 DEEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSG 79 (80)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCC
Confidence 34667777789999999999887532 223445667777765 4556888999987765443
No 167
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=94.79 E-value=0.27 Score=28.04 Aligned_cols=61 Identities=20% Similarity=0.385 Sum_probs=44.4
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.+ +++...|+.+|.+.+ ++++....+..+|+.+.. ....++-+++|+.|.++-..-||
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~-~~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPR-SEWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCceecCCCCEEEEEEeccCC
Confidence 45444 455667899998855 566777777799987742 23456679999999998887776
No 168
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=94.72 E-value=0.27 Score=29.25 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=37.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
+|.++. +|..+.+.++++.|..+|+.+|.+..+.+.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 455554 667889999999999999999999999887777888863
No 169
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=94.69 E-value=0.0088 Score=44.68 Aligned_cols=61 Identities=20% Similarity=0.472 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEEc---C--CCcHHHHHHHHHh----------HhCCCCCceE-----EEEcceEeecCcccccccc
Q 031706 2 QIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNI 61 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~---~--~~tV~~lK~~i~~----------~~~i~~~~q~-----L~~~g~~L~d~~~L~~~~i 61 (154)
.|++|+..+..+.+.+. + +++|.++|..+++ .+++|.+..+ |+|+-+++.|.++|.+..-
T Consensus 80 tV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~ 159 (309)
T PF12754_consen 80 TVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLA 159 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHh
Confidence 45666666655555433 2 5789999999999 8899999888 9999999989899888754
Q ss_pred c
Q 031706 62 Q 62 (154)
Q Consensus 62 ~ 62 (154)
.
T Consensus 160 ~ 160 (309)
T PF12754_consen 160 D 160 (309)
T ss_dssp -
T ss_pred c
Confidence 3
No 170
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=94.65 E-value=0.34 Score=28.48 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=39.1
Q ss_pred EEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECC
Q 031706 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g 123 (154)
.|..++|+...+.+.+..|+.++-.+++++-|+.++...+...|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45577999999999999999999999999999999999887554
No 171
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=94.24 E-value=0.59 Score=28.59 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=45.1
Q ss_pred ceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-EC---C-eecC-CCCcccccCCCCCCEEEEEEeecCC
Q 031706 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YA---G-KQLA-DDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~---g-~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..++..++..+||+.+...+++.+.| ....||- +. + ..|. .+.|+.+.++.+|..|-+=-|-..|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 35667889999999999999999999 6667775 22 1 2454 5679999999999999887777666
No 172
>smart00455 RBD Raf-like Ras-binding domain.
Probab=94.17 E-value=0.24 Score=28.97 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=39.5
Q ss_pred EEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECC
Q 031706 80 KVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 80 ~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g 123 (154)
.|..++|+...+.+.+..|+.++-..++++.|+.++...+...|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 34567899999999999999999999999999999999998755
No 173
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=93.82 E-value=0.4 Score=27.36 Aligned_cols=66 Identities=23% Similarity=0.475 Sum_probs=50.6
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHhHhC---CCCCceEEE-EcceEeecCccccccccccccceeeeeee
Q 031706 8 LTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~---i~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
.+|+...++..++...--..++--+.+| -|++.-.|. -+|..++-++.+.+||+.++-++.+.++.
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 3678888888888887776666655543 577766665 45889999999999999999998877653
No 174
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=93.79 E-value=0.28 Score=28.70 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=49.2
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCC--CCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...+.+....||.+|.+.+..+..- ......+..+|+...+ ...+.-+++|++|.++=..-||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5567788899999999999877631 2366778899998877 3666778999999988777766
No 175
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=93.75 E-value=0.56 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.282 Sum_probs=38.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~ 58 (154)
+|.+.. +|....+.++++.+..+|.++|..+.++. ...++-|... .|..++++
T Consensus 4 kVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~s 56 (86)
T cd06408 4 RVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMGD 56 (86)
T ss_pred EEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCccccC
Confidence 344442 67899999999999999999999999985 4555666544 34444443
No 176
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=93.74 E-value=1 Score=31.41 Aligned_cols=73 Identities=25% Similarity=0.317 Sum_probs=50.1
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcc-eEEEEC---C---eecCCCCcccccCCC-CCCEEEEEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIYA---G---KQLADDKTARDYNIE-GGSVLHLVL 147 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-q~l~~~---g---~~L~d~~~L~~~~i~-~~~~i~l~~ 147 (154)
+..+.|..++|....+.++++.|+.++...++.+.|++... .-|.+- + .-++...++.+.... ....+++..
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 35677888899999999999999999999999999995422 244321 1 235556666666554 234555444
Q ss_pred e
Q 031706 148 A 148 (154)
Q Consensus 148 ~ 148 (154)
|
T Consensus 83 r 83 (207)
T smart00295 83 K 83 (207)
T ss_pred E
Confidence 3
No 177
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=93.69 E-value=0.31 Score=29.14 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=43.5
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCcHHHHHHHHHhHhC-CCC--CceEEEEcceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~-i~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
|+|+|+... | ....++++.+.||.+|.+.+..... ... ..-.+..+++... .+.-+++|++|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEe
Confidence 566666442 3 4567888889999999999976541 111 1113445666543 34457789999776
Q ss_pred eeeec
Q 031706 71 LRLRG 75 (154)
Q Consensus 71 ~~~~~ 75 (154)
....|
T Consensus 77 PpvsG 81 (82)
T PLN02799 77 PPISG 81 (82)
T ss_pred CCCCC
Confidence 54443
No 178
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=93.38 E-value=0.46 Score=28.68 Aligned_cols=64 Identities=16% Similarity=0.317 Sum_probs=46.5
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCC-cceEEEECCee-----cCCCCcccc----cCCCCCCEEEEEEe
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIYAGKQ-----LADDKTARD----YNIEGGSVLHLVLA 148 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~-~~q~l~~~g~~-----L~d~~~L~~----~~i~~~~~i~l~~~ 148 (154)
+|..+.+.++++.+..+|+++|+++.++.. ..+.|.|...+ |..+.-|.+ |.....++|.+.+.
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v~ 81 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLVH 81 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEee
Confidence 667888999999999999999999999865 67888886543 222233444 45556667766654
No 179
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=93.35 E-value=0.72 Score=26.90 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=46.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCC--CCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
...+.+....||.+|.+++.....- ....-.+..+|+...+ .-.+.-+++|++|.+.....|
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 5677888999999999999877621 2255677788988877 356677889999988765443
No 180
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=93.25 E-value=0.14 Score=39.10 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=61.6
Q ss_pred CEEEEEeC--CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecC--ccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~--~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~--~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|.++|-.. ....+.+.+..+-....|+..++...|++....-|+|+++.+.+. ..+.++|+..++.+.+..+...
T Consensus 1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 45555443 456688899999999999999999999999999999999998655 5899999999999987766543
No 181
>PRK07440 hypothetical protein; Provisional
Probab=93.14 E-value=0.8 Score=26.68 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=46.1
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+. .++.+..|+.+|-+ ..++++....+-.+|+.+. .....+.-+++|+.|.++--.-||
T Consensus 10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~-r~~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILH-RQFWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeC-HHHcCceecCCCCEEEEEEEecCC
Confidence 4554 45566778888876 4467888888889998875 334667789999999998887776
No 182
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=93.12 E-value=0.94 Score=26.31 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=45.9
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|+. ++++...|+++|-+. .+++++......+|..+..+ ...+.-+++|+.|.++-..-||
T Consensus 9 g~~--~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 9 GKE--VEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred CEE--EEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 444 556666899998874 57888888888999988633 3566778899999998877776
No 183
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=93.07 E-value=0.87 Score=25.93 Aligned_cols=61 Identities=20% Similarity=0.385 Sum_probs=44.6
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.+ ++++..|+.+|-.. .++++....+.++|..+.. ....+.-+++|++|.++--.-||
T Consensus 6 NG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r-~~~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 6 NGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPR-SQHASTALREGDVVEIVHALGGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 45543 55667788888764 5788888888899977653 23556678999999998877776
No 184
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=93.04 E-value=0.55 Score=27.62 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.2
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
+.|-.++|+.-.+.+.|+.|+.|+-+++-++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 467778999999999999999999999999999999888887654
No 185
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=93.02 E-value=1.1 Score=26.55 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=43.8
Q ss_pred eEEEeeCCc-chHHHHHHHHhhhcC-C--CCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 88 EIEIDIEPT-DTIERIKERVEEKEG-I--PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~-~tV~~LK~~i~~~~g-i--~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...++++.. .||.+|++.+.++.+ + ......+..+++...+ +.-+++|+.|.++=..-||
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 346778766 899999999988864 1 1233466688887764 4578899999888777666
No 186
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.92 E-value=0.71 Score=27.57 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=41.9
Q ss_pred ceEEEeeCCcchHHHHHHHHhhhcC-CCC--cceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 87 KEIEIDIEPTDTIERIKERVEEKEG-IPP--VQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~~~g-i~~--~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
....++++...|+++|.+.+..... +.. ....+..+++... .++-+++|++|.++=..-||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCCCCCC
Confidence 3466778788899999999976652 111 1234557887764 34567899999887776665
No 187
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=92.81 E-value=0.64 Score=27.55 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=35.1
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~ 124 (154)
++....+.+++..|..+|+.+|+++.+.+.....|.|...
T Consensus 9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De 48 (81)
T smart00666 9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE 48 (81)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence 5677889999999999999999999999888888888754
No 188
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=92.74 E-value=0.93 Score=27.39 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=43.6
Q ss_pred ceEEEeeCCcchHHHHHHHHhhhcCC------C-----CcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 87 KEIEIDIEPTDTIERIKERVEEKEGI------P-----PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~~~gi------~-----~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
....++++ ..||.+|.+.+.+++.- . .....+..+|+....... .-+++|+.|.++=..-||
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 34566676 78999999999877641 0 123566688887654321 568899999988777776
No 189
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=92.70 E-value=0.87 Score=27.63 Aligned_cols=61 Identities=13% Similarity=0.306 Sum_probs=46.5
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.+ ++++..|+.+|-+. .++++....+-.+|..+. ....+++-+++|+.|.++--.-||
T Consensus 24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEecCC
Confidence 55554 45666788888775 478888888889998884 445777889999999998877776
No 190
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=92.49 E-value=0.92 Score=25.93 Aligned_cols=60 Identities=17% Similarity=0.322 Sum_probs=43.2
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.+ ++++..|+.+|-.. .++++....+.+++..+..+. .+.+ +++|+.|.++--.-||
T Consensus 6 NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 6 NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 45554 44566788877664 578888889999998775322 3345 8999999988777776
No 191
>smart00455 RBD Raf-like Ras-binding domain.
Probab=92.28 E-value=0.84 Score=26.64 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=40.1
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
..|-.++|+...+.+.|+.|+.|+-+.+-++.|+.++.-.++..|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 356678999999999999999999999999999999888888755
No 192
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=92.27 E-value=1.1 Score=25.13 Aligned_cols=54 Identities=19% Similarity=0.307 Sum_probs=38.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
|+|+|. | ..+++..++|+.+||.++... .=.++++|-+..++..| ++|+.|.+.
T Consensus 1 M~I~vN---~--k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L-----~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKVN---E--KEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIEL-----KEGDEVFLI 54 (57)
T ss_pred CEEEEC---C--EEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCcccc-----CCCCEEEEE
Confidence 556553 3 467788899999999997653 22678999887766554 457777554
No 193
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=92.03 E-value=1.4 Score=25.10 Aligned_cols=64 Identities=17% Similarity=0.322 Sum_probs=43.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+| +|+ .++++...|+.++-+. .+++++..-+..+|..+... .-.+.-+++|++|.+..-..
T Consensus 1 m~i~v---NG~--~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~-~~~~~~l~~gD~vei~~~vg 64 (66)
T PRK05659 1 MNIQL---NGE--PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRS-QHASTALREGDVVEIVHALG 64 (66)
T ss_pred CEEEE---CCe--EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHH-HcCcccCCCCCEEEEEEEec
Confidence 45544 555 4466678898887765 57888888888888777543 23445578899998765443
No 194
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=91.95 E-value=1.5 Score=25.30 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=44.5
Q ss_pred CCceEEEeeCCc-chHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPT-DTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~-~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.+ +++.. .||.+|-+ ..++++....+-++++.+.. ...+++-+++|+.|.++--.-||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~----~l~~~~~~vav~vN~~iv~r-~~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLT----HLELDNKIVVVERNKDILQK-DDHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHH----HcCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEecCC
Confidence 55554 44444 57887776 35778888888899988753 34667779999999998877776
No 195
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=91.91 E-value=1.3 Score=26.33 Aligned_cols=59 Identities=15% Similarity=0.262 Sum_probs=39.6
Q ss_pred EEEEEEcCC-CcHHHHHHHHHhHhC-CC--CCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 12 TITLEVESS-DTIDNVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 12 ~~~~~v~~~-~tV~~lK~~i~~~~~-i~--~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
...++++.+ .||.+|.+.+.+... .- .....+..+++...+ +.-+++|++|.+.....|
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsG 79 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSG 79 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCC
Confidence 457888877 899999999988763 10 122345566666553 456788999877755443
No 196
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=91.78 E-value=1.2 Score=26.58 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~ 46 (154)
++.+.+.+..+..+|..+|.++...+++.-+|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 57788999999999999999999999999999995
No 197
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=91.68 E-value=1.3 Score=25.30 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=42.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+| +|+.+ +++.+.|+.+|-+. .++++...-+.+++..+..+.- ..+ +++||+|.+..-..
T Consensus 1 m~i~v---NG~~~--~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~~-~~~-L~~gD~ieIv~~Vg 63 (65)
T PRK05863 1 MIVVV---NEEQV--EVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSDW-ATK-LRDGARLEVVTAVQ 63 (65)
T ss_pred CEEEE---CCEEE--EcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhHh-hhh-cCCCCEEEEEeecc
Confidence 45554 56544 44567888887765 5788888888899987754332 235 89999998765433
No 198
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=91.58 E-value=1.6 Score=24.97 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=43.5
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.+ ++....|+.+|.+.+ +.+.....+-.+++.+. ....++.-+++|+.|.++-..-||
T Consensus 6 Ng~~~--~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~-r~~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 6 NDQPM--QCAAGQTVHELLEQL----NQLQPGAALAINQQIIP-REQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeC-hHHcCccccCCCCEEEEEEEccCC
Confidence 45554 445667899888754 55556677778998774 333566678999999998887776
No 199
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=91.49 E-value=0.95 Score=26.46 Aligned_cols=45 Identities=20% Similarity=0.321 Sum_probs=36.1
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECC
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g 123 (154)
+.|..++|+...+.+.+..|+.+.-..+.++.|+.++...+...|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456678999999999999999999999999999999888776443
No 200
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=91.18 E-value=2.2 Score=25.76 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=39.6
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCC------C-----CCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i------~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
....++++ ..||.+|.+.+.+...- . .....+..+|+..+.+.. ..+++|++|.+.....|
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 44667776 89999999999877531 0 112445567766544321 56788999987765443
No 201
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=91.17 E-value=2.3 Score=29.65 Aligned_cols=61 Identities=30% Similarity=0.388 Sum_probs=43.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC-ceEEEEc---c---eEeecCccccccccc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G---KQLEDGRTLADYNIQ 62 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~---g---~~L~d~~~L~~~~i~ 62 (154)
.+.|..++|....+.+++++|+.++.+.+.++.|++.. .--|.+. + ..++...++.+....
T Consensus 5 ~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 5 VLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred EEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 57788899999999999999999999999999999531 1233332 1 345555555555443
No 202
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=91.04 E-value=1.4 Score=26.22 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=35.0
Q ss_pred EEEEeCCCCEEE-EEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 3 IFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~~g~~~~-~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
|.+.. +|.... +.+..+.+..+|+.+|++..+.+.....|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 4 VKVRY-GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEE-CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 44444 444555 899999999999999999999998888888853
No 203
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.5 Score=35.91 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=43.6
Q ss_pred eeCCcchHHHHHHHHhhhcCCCCcceEEEEC---Ce-----ecCCCCcccccCCCCCCEEEE
Q 031706 92 DIEPTDTIERIKERVEEKEGIPPVQQRLIYA---GK-----QLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 92 ~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~---g~-----~L~d~~~L~~~~i~~~~~i~l 145 (154)
-+.-.-||.+++..+..+.|+.+.+++|++- |+ .+.-+..|.+|.|++|+.+-+
T Consensus 353 ~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 353 LICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred EEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 3445669999999999999999999999863 33 234567899999999998765
No 204
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=90.72 E-value=0.72 Score=38.54 Aligned_cols=47 Identities=21% Similarity=0.476 Sum_probs=39.8
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceE
Q 031706 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (154)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 49 (154)
|+|-.. ++..+.+-++++.|...++++|++.+|+|.+.|.|+|.|..
T Consensus 316 vhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 316 VHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred eEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 444433 45678889999999999999999999999999999999754
No 205
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=90.68 E-value=0.71 Score=35.74 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=51.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCC-CCCceEEEE--cceEeecC-ccccccccccccce
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF--AGKQLEDG-RTLADYNIQKESTL 67 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i-~~~~q~L~~--~g~~L~d~-~~L~~~~i~~~~~i 67 (154)
.|.|+..+|......++.+.||.+++..|.....- +...+.|.. --+.|.|+ .||++-|+.+-..+
T Consensus 307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 47888899999999999999999999999988754 344566663 35778654 59999998765433
No 206
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=90.53 E-value=1.4 Score=25.11 Aligned_cols=60 Identities=20% Similarity=0.386 Sum_probs=41.2
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
+|+ .++++...||.+|.+.+ +++++...+..+|+....+ .-.++-+++|++|.+.....|
T Consensus 5 Ng~--~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~G 64 (65)
T cd00565 5 NGE--PREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGG 64 (65)
T ss_pred CCe--EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 454 45556788999998875 4677777777888876443 233456888999977755443
No 207
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=90.03 E-value=2.6 Score=24.78 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=34.8
Q ss_pred EEEEEeCCCCEEEEEEc-CCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 2 QIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
.|.++. +|....+.++ .+.+..+|+++|.+..+.+.....+.|..
T Consensus 2 ~vK~~~-~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 2 RVKVKY-GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cEEEEe-cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 455554 4577888888 89999999999999999886555666643
No 208
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=89.94 E-value=2.1 Score=24.27 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=40.3
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
+|+. ++++.+.|+.+|.+.+ +++++...+..+|..+..+ .-.++-+++||.|.+.....|
T Consensus 4 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~G 63 (64)
T TIGR01683 4 NGEP--VEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGG 63 (64)
T ss_pred CCeE--EEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccC
Confidence 5554 4456778999998874 5667666677888876432 234466889999977754433
No 209
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=89.87 E-value=1.4 Score=26.12 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=38.9
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCC
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~ 129 (154)
|-.++|+...+.+.+..|+.++-+..+++.++.|+..-|..+-..++|.
T Consensus 4 V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 4 VCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence 4467889999999999999999999999999998887665433334443
No 210
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=89.53 E-value=0.96 Score=29.36 Aligned_cols=55 Identities=22% Similarity=0.376 Sum_probs=37.9
Q ss_pred eCC-cchHHHHHHHHhhhc----CCC------CcceEEEEC----------------C-eec---CCCCcccccCCCCCC
Q 031706 93 IEP-TDTIERIKERVEEKE----GIP------PVQQRLIYA----------------G-KQL---ADDKTARDYNIEGGS 141 (154)
Q Consensus 93 v~~-~~tV~~LK~~i~~~~----gi~------~~~q~l~~~----------------g-~~L---~d~~~L~~~~i~~~~ 141 (154)
|+. +.||.+|++.+.+.. |++ .+.+++++. . ..| +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 789999988876654 343 233444422 1 245 678899999999999
Q ss_pred EEEEEE
Q 031706 142 VLHLVL 147 (154)
Q Consensus 142 ~i~l~~ 147 (154)
.|.++-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 988764
No 211
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=89.51 E-value=1.9 Score=25.96 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=29.2
Q ss_pred EEEEEeCCCCEEEEEEcC--CCcHHHHHHHHHhHhCCC
Q 031706 2 QIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~--~~tV~~lK~~i~~~~~i~ 37 (154)
+|.+. -+|....+.+++ +.+..+|++.+....+++
T Consensus 2 ~vKat-y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 2 NLKVT-YNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred EEEEE-ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 34443 367888999999 779999999999999999
No 212
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=89.44 E-value=0.93 Score=27.05 Aligned_cols=37 Identities=5% Similarity=0.139 Sum_probs=32.4
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~ 124 (154)
++.+.+.+-.+.++|..+|+++...+++..+|.|...
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~ 44 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAP 44 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCC
Confidence 4567788888999999999999999999999998643
No 213
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=89.28 E-value=1 Score=34.88 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=51.7
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCc-ceEEE--ECCeecC-CCCcccccCCCCCCEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLI--YAGKQLA-DDKTARDYNIEGGSVL 143 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~q~l~--~~g~~L~-d~~~L~~~~i~~~~~i 143 (154)
-.|.|+..+|......++.+.||.+++..|+..-.-.+. .+.|. |.-++|. ++.||++-|+.+...+
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 457888999999999999999999999999876554333 44444 6678776 6889999998775443
No 214
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=89.05 E-value=1.9 Score=24.12 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=35.3
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
.+++....|+.+||.++.... =.++++|-...++. -+++|+.|.+.-|
T Consensus 9 ~~~~~~~~tl~~lr~~~k~~~------DI~I~NGF~~~~d~-----~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKPDA------DIVILNGFPTKEDI-----ELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCCCC------CEEEEcCcccCCcc-----ccCCCCEEEEEeC
Confidence 356777889999999886532 25789999887655 5668888877643
No 215
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=88.82 E-value=1.8 Score=34.64 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=54.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCC----CCCc--eEEE-EcceEeecCccccccccccccceeeeeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQ--QRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i----~~~~--q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
+|+|...+ +...+.++.+.+|.||--.+-+..+- +... -.|. -+|.+|+.+.+|.+.++.||+.+++.....
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~~ 82 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPASA 82 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCCC
Confidence 46666543 45778889999999999999887753 2222 2333 467899999999999999999999887544
No 216
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=88.55 E-value=2.1 Score=35.02 Aligned_cols=64 Identities=36% Similarity=0.526 Sum_probs=41.7
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHh--CCC------CCceEEEEc----ce-EeecC-------------ccccccccccc
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~-~L~d~-------------~~L~~~~i~~~ 64 (154)
..+.+.|-..+||.++|++|-... +.| ++..-|-|. |. .|.|. .||+.|++.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 558899999999999999996553 333 233344332 22 45443 35999999999
Q ss_pred cceeeeeeee
Q 031706 65 STLHLVLRLR 74 (154)
Q Consensus 65 ~~i~l~~~~~ 74 (154)
+++.+..+..
T Consensus 282 a~vaLv~k~~ 291 (539)
T PF08337_consen 282 ATVALVPKQH 291 (539)
T ss_dssp EEEEEEES--
T ss_pred ceEEEeeccc
Confidence 9998888764
No 217
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=88.51 E-value=3 Score=23.51 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=40.6
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+. +++++..|+.+|.+.+. ++ ....+..+|+.... ....+.-+++|++|.++-..-||
T Consensus 6 Ng~~--~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~-~~~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 6 NQQT--LSLPDGATVADALAAYG----AR-PPFAVAVNGDFVAR-TQHAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred CCEE--EECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCc-hhcccccCCCCCEEEEEeeccCC
Confidence 4554 45566779999988663 33 23566688887642 22445568899999998888777
No 218
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=88.39 E-value=3.5 Score=24.06 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=39.1
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc--eEeecCc
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGR 54 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g--~~L~d~~ 54 (154)
+.|.-++|+.-.+.+.++.|+.|.-..+-++.|+.++.-.++..| +.++-+.
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 567788999999999999999999999999999999877766554 4454433
No 219
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.12 E-value=2 Score=31.85 Aligned_cols=69 Identities=10% Similarity=0.193 Sum_probs=54.3
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecC---CCCcccccCCCCCCEEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLH 144 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~---d~~~L~~~~i~~~~~i~ 144 (154)
.-.+.|+.++|+++...+.+..|...++.-+.-..+...+.+.|. |..+.+. -.++|...++-+.+++.
T Consensus 210 ~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~li 283 (290)
T KOG2689|consen 210 QCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLI 283 (290)
T ss_pred ceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchhee
Confidence 356788899999999999999999999999999888766666554 4444443 36789999988887764
No 220
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=87.89 E-value=3.7 Score=24.86 Aligned_cols=59 Identities=8% Similarity=0.175 Sum_probs=41.0
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
||+. .+++.+.||.+|-+. .++++...-+-.+|..+. ...-+++-+++||.|.+.--..
T Consensus 24 NG~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVp-r~~w~~t~L~egD~IEIv~~Vg 82 (84)
T PRK06083 24 NDQS--IQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVP-RSEWQSTVLSSGDAISLFQAIA 82 (84)
T ss_pred CCeE--EEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeC-HHHcCcccCCCCCEEEEEEEec
Confidence 5553 444667788887765 467877777778998874 3345667789999998775443
No 221
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=87.79 E-value=1.4 Score=37.64 Aligned_cols=62 Identities=18% Similarity=0.359 Sum_probs=48.6
Q ss_pred CCceEEEeeCC-cchHHHHHHHHhhhcCCCCcceEEE-ECCeecCCCCcccccCC--CCCCEEEEE
Q 031706 85 TGKEIEIDIEP-TDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDYNI--EGGSVLHLV 146 (154)
Q Consensus 85 ~g~~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~L~d~~~L~~~~i--~~~~~i~l~ 146 (154)
.|++..++... ..|+++||.+|+...|..+.++.+. -+|..+..++.|.+|.- ++.+-|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 57777777765 5799999999999999999999888 45667888888988873 344455554
No 222
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=87.39 E-value=3.4 Score=25.11 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=33.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
|.|-..+|.+..+.|+..+|++++-+.+..+.+...+.-.
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W 44 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSW 44 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCe
Confidence 5667789999999999999999999999999886654433
No 223
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=87.09 E-value=4.6 Score=24.26 Aligned_cols=52 Identities=21% Similarity=0.411 Sum_probs=40.4
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCeecCCCCcccccCCCCCCEEEEE
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
+..+...+++..||.++-+ ..|+|....-++ .||+...- +|-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEE
Confidence 4567788888989988766 569999998776 78887653 4678899988775
No 224
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=87.05 E-value=4.4 Score=24.72 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=36.1
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCccc
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTAR 133 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~ 133 (154)
.|....+.++++.+..+|..+|.++.++. ...++.|... .|-.|+.
T Consensus 10 ~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 10 QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 56788899999999999999999999985 5667777665 4444443
No 225
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=86.88 E-value=2.9 Score=25.75 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=43.5
Q ss_pred CCceEEEeeCC-----cchHHHHHHHHhhhcCCCC-cceEEEECCe-----ecCCCCccccc-----CCCCCCEEEEEEe
Q 031706 85 TGKEIEIDIEP-----TDTIERIKERVEEKEGIPP-VQQRLIYAGK-----QLADDKTARDY-----NIEGGSVLHLVLA 148 (154)
Q Consensus 85 ~g~~~~~~v~~-----~~tV~~LK~~i~~~~gi~~-~~q~l~~~g~-----~L~d~~~L~~~-----~i~~~~~i~l~~~ 148 (154)
+|....+.++. +.+..+|+++|++.+++++ ....|.|... .|.++.-|.++ .-+...++.+.++
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 45556666664 6899999999999999987 6677778654 23333333332 3335677777765
Q ss_pred e
Q 031706 149 L 149 (154)
Q Consensus 149 ~ 149 (154)
+
T Consensus 88 ~ 88 (91)
T cd06398 88 V 88 (91)
T ss_pred E
Confidence 4
No 226
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=86.85 E-value=3.9 Score=23.01 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=39.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+| +|+ .+++++..|+.+|-+.+. ++ ....+..+|...... .-.+.-+++|++|.+.....|
T Consensus 1 m~i~v---Ng~--~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~-~~~~~~L~~gD~vei~~~v~G 64 (65)
T PRK06944 1 MDIQL---NQQ--TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVART-QHAARALAAGDRLDLVQPVAG 64 (65)
T ss_pred CEEEE---CCE--EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCch-hcccccCCCCCEEEEEeeccC
Confidence 45544 455 455667889999988763 33 234556777765432 123344788999987754433
No 227
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=86.83 E-value=3.5 Score=34.70 Aligned_cols=41 Identities=24% Similarity=0.488 Sum_probs=37.0
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCee
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ 125 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~ 125 (154)
++..+.+.++++.|...++..|...+|+|.+.|.|.+.|..
T Consensus 323 ~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 323 QATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred cceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 55668899999999999999999999999999999998763
No 228
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=86.46 E-value=3.1 Score=25.08 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=30.1
Q ss_pred cCCceEEEeeCC--cchHHHHHHHHhhhcCCCCcceEEEE
Q 031706 84 LTGKEIEIDIEP--TDTIERIKERVEEKEGIPPVQQRLIY 121 (154)
Q Consensus 84 ~~g~~~~~~v~~--~~tV~~LK~~i~~~~gi~~~~q~l~~ 121 (154)
.+|.+..+.+++ +.+..+|++.+..+.+++ ...+.|
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 367788888988 779999999999999999 555555
No 229
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=86.24 E-value=6.1 Score=24.61 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=44.8
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC-Cc-eEEEEcc---eEeecC-cc-------ccccccccccceee
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQ-QRLIFAG---KQLEDG-RT-------LADYNIQKESTLHL 69 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~-q~L~~~g---~~L~d~-~~-------L~~~~i~~~~~i~l 69 (154)
|.|-..++...++.++.++||.++-..+.+++.++. +. |-++..| +.|... +. |...|-.+.|.++.
T Consensus 5 IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~~l~RvL~p~ErPl~IqkrlL~q~GY~~~D~l~~ 84 (97)
T cd01775 5 IRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKHDLSRVLRPTEKPLLIQKRLLLQVGYEERDRIED 84 (97)
T ss_pred EEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEECCeeeecCCcCCcHHHHHHHHHHcCCCCCCcHHH
Confidence 455566777788999999999999999999998766 33 3333333 445432 22 45555555555544
Q ss_pred e
Q 031706 70 V 70 (154)
Q Consensus 70 ~ 70 (154)
.
T Consensus 85 l 85 (97)
T cd01775 85 I 85 (97)
T ss_pred h
Confidence 3
No 230
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=86.21 E-value=2.8 Score=25.50 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=44.9
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcce-EEE-EC-----CeecCCCCcc----cccCCCCCCEEE
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQ-RLI-YA-----GKQLADDKTA----RDYNIEGGSVLH 144 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q-~l~-~~-----g~~L~d~~~L----~~~~i~~~~~i~ 144 (154)
.+.|...+|....+.|++..|++++-+.+..+.+...+.- .|. .. .+.++|+..+ +..+..+...++
T Consensus 4 vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~ 81 (85)
T cd01787 4 VVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLF 81 (85)
T ss_pred EEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEE
Confidence 3556678999999999999999999999999998754432 333 11 2345665543 333444444443
No 231
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=86.11 E-value=5.1 Score=23.64 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=32.5
Q ss_pred CCceEE-EeeCCcchHHHHHHHHhhhcCCCCcceEEEECC
Q 031706 85 TGKEIE-IDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 85 ~g~~~~-~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g 123 (154)
++.... +.+....+..+|+.+|++.++.+....++.|..
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344444 888888899999999999999998888888864
No 232
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.06 E-value=1.9 Score=32.88 Aligned_cols=55 Identities=13% Similarity=0.201 Sum_probs=43.4
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc---ceE-----eecCccccccccccccceee
Q 031706 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQ-----LEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~-----L~d~~~L~~~~i~~~~~i~l 69 (154)
..|+-.-||.|+|..+..+.|+.+.+++|+|- |+. .+.+..|-.|+|.+|+.+.+
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeee
Confidence 44555679999999999999999999999973 332 33456788899999998754
No 233
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=85.87 E-value=1.4 Score=33.89 Aligned_cols=61 Identities=18% Similarity=0.279 Sum_probs=51.4
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCC--CCcccccCCCCCCEEEE
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLAD--DKTARDYNIEGGSVLHL 145 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d--~~~L~~~~i~~~~~i~l 145 (154)
..+.+.+.+...-....|+...+..+|++.+...++|+++.+.+ +..+..+|...++.+.+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~l 73 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLAL 73 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEec
Confidence 44567777877888899999999999999999999999998864 57899999999988543
No 234
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=85.85 E-value=3.7 Score=24.08 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=32.7
Q ss_pred CCceEEEeeC-CcchHHHHHHHHhhhcCCCCcceEEEECCe
Q 031706 85 TGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 85 ~g~~~~~~v~-~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~ 124 (154)
+|....+.++ .+.|..+|+++|+++.+.+.....+.|...
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~ 48 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDE 48 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCC
Confidence 3567778888 888999999999999998876777777653
No 235
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=85.60 E-value=4.9 Score=22.90 Aligned_cols=64 Identities=13% Similarity=0.202 Sum_probs=40.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+| +|+.+ ++..+.|+.+|-+.+ +.+.....+-.++..+.. ..-+++-+++|+.|.+.....
T Consensus 1 m~i~v---Ng~~~--~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r-~~w~~~~L~~gD~Ieii~~v~ 64 (66)
T PRK08053 1 MQILF---NDQPM--QCAAGQTVHELLEQL----NQLQPGAALAINQQIIPR-EQWAQHIVQDGDQILLFQVIA 64 (66)
T ss_pred CEEEE---CCeEE--EcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeCh-HHcCccccCCCCEEEEEEEcc
Confidence 55555 55544 456678999988763 445555666788887742 233445588899997765443
No 236
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=85.45 E-value=5.5 Score=23.85 Aligned_cols=41 Identities=29% Similarity=0.280 Sum_probs=32.0
Q ss_pred EEEEeCCCC----EEEEEEcCCCcHHHHHHHHHhHhCCC--CCceEE
Q 031706 3 IFVKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIP--PDQQRL 43 (154)
Q Consensus 3 v~v~~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~--~~~q~L 43 (154)
|.|-..++. ..++.|++++|+.++-+++.++++++ ++.-.|
T Consensus 5 lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 5 LRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 445555666 78899999999999999999999983 333455
No 237
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=85.44 E-value=2.2 Score=25.99 Aligned_cols=41 Identities=10% Similarity=0.259 Sum_probs=35.6
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcce
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQ 117 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q 117 (154)
..+.|-.++|..+.+++..+++..++-+.++++.|+|.+-+
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 34566677899999999999999999999999999987665
No 238
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=85.32 E-value=5.2 Score=22.97 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=42.3
Q ss_pred CEEEEEeCCCCEEEEEEcCC-CcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+| +|+.+ +++.+ .||.+|-+. .+++++..-+-+++..+..+ .-.++-+++|+.|.+.--..
T Consensus 1 m~I~v---NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~Vg 65 (67)
T PRK07696 1 MNLKI---NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVG 65 (67)
T ss_pred CEEEE---CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEec
Confidence 45554 56644 45554 678877654 57777777777888887543 34556688999998765443
No 239
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=85.27 E-value=6.1 Score=24.65 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.1
Q ss_pred EeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE
Q 031706 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 6 ~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 45 (154)
+-.+|++..+.|+.+.+..+|+.++.+..+++.. ..|.|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 3447888999999999999999999999998876 56655
No 240
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=85.24 E-value=1.9 Score=28.04 Aligned_cols=55 Identities=20% Similarity=0.442 Sum_probs=37.0
Q ss_pred EcC-CCcHHHHHHHHHhHh----CCCCC------ceEEEEc----------------c-eEe---ecCcccccccccccc
Q 031706 17 VES-SDTIDNVKAKIQDKE----GIPPD------QQRLIFA----------------G-KQL---EDGRTLADYNIQKES 65 (154)
Q Consensus 17 v~~-~~tV~~lK~~i~~~~----~i~~~------~q~L~~~----------------g-~~L---~d~~~L~~~~i~~~~ 65 (154)
|+. ++||.+|++.+.+.. |++|- ..++++. . ..| +++.+|.++|+.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 776 899999998887653 45442 2344432 1 355 567789999998888
Q ss_pred ceeeee
Q 031706 66 TLHLVL 71 (154)
Q Consensus 66 ~i~l~~ 71 (154)
.|.+..
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 876554
No 241
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=85.06 E-value=0.35 Score=37.16 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=42.6
Q ss_pred CCCCEEEEEEc-CCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccc
Q 031706 8 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (154)
Q Consensus 8 ~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L 56 (154)
.+|....+.+. .+..+..+|.++....+++++.|++.+.|..+.|..++
T Consensus 290 ~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 46777777777 77889999999999999999999999999999887544
No 242
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=84.80 E-value=1.4 Score=28.64 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=35.4
Q ss_pred EeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCccccc
Q 031706 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~ 135 (154)
+-|+.+.||+++...|..+.+++++...|..++.....+.++++.
T Consensus 45 llVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 45 LALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHH
Confidence 368999999999999999999999986666677655566666543
No 243
>PRK07440 hypothetical protein; Provisional
Probab=84.20 E-value=6.2 Score=22.90 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=41.0
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
+|+. .++....||.+|-+. .++++...-+-.+|..+.. ..-.+.-+++|+.|.+.--..
T Consensus 10 NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r-~~w~~~~L~~gD~IEIv~~v~ 68 (70)
T PRK07440 10 NGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHR-QFWEQTQVQPGDRLEIVTIVG 68 (70)
T ss_pred CCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCH-HHcCceecCCCCEEEEEEEec
Confidence 5654 556678899987764 5677777777788888753 234556688899997765443
No 244
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=84.14 E-value=7.6 Score=23.89 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=33.2
Q ss_pred EEEEeCCCCEEEEEEcC-----CCcHHHHHHHHHhHhCCCC-CceEEEEcc
Q 031706 3 IFVKTLTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~-----~~tV~~lK~~i~~~~~i~~-~~q~L~~~g 47 (154)
|.+.. +|....+.++. +.+..+|+++|.+.+.+++ ....|.|..
T Consensus 3 vKv~y-~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 3 VKVKY-GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred EEEEe-CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 44443 56677788874 7999999999999999987 555666753
No 245
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=83.66 E-value=5.3 Score=24.92 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=34.8
Q ss_pred eecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeec
Q 031706 82 KTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQL 126 (154)
Q Consensus 82 ~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L 126 (154)
+..+|.+..+.|+.+.+..+|++++++..+++.. +.+. ..+..+
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~edl 63 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQLPDEDL 63 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCc
Confidence 4557889999999999999999999999998765 4444 345544
No 246
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=83.54 E-value=7.3 Score=31.30 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=51.5
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCC------CCcceEEE-ECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI------PPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi------~~~~q~l~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
++|... .+...+-++.+..+.+|--.+-+..+- .+....|. ..|.+++.+.+|.+.+|.+|+.+++.-+
T Consensus 5 VtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 5 VTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 344443 344677788889999999888777653 23344555 5778999999999999999999988754
No 247
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=82.91 E-value=1.4 Score=31.46 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCC
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~ 39 (154)
|-.|.+.|.++.|..++|++|++++|++..
T Consensus 132 GiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 132 GIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp EEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred CCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 456888999999999999999999999853
No 248
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=82.68 E-value=6.3 Score=25.13 Aligned_cols=37 Identities=5% Similarity=0.186 Sum_probs=32.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceE
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~ 49 (154)
-.+.|++++|++.+-..+.+..+++++++-++|-+.-
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 4578999999999999999999999999998886543
No 249
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=82.48 E-value=7.3 Score=29.83 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=47.5
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+. +++.+..|+.+|-+. .+++++...+.+||+.+. .....++-+++|+.|.++--.-||
T Consensus 6 NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVp-r~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 6 NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVP-RSEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECC-HHHcCccccCCCCEEEEEEEecCC
Confidence 4554 455667788888764 478888888889999884 344677789999999999888888
No 250
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=81.80 E-value=6.5 Score=23.49 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=33.3
Q ss_pred chHHHHHHHHhhhcCCCCcceEEEE--CCeecCCCCcccccCCCCCCEEEEEE
Q 031706 97 DTIERIKERVEEKEGIPPVQQRLIY--AGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 97 ~tV~~LK~~i~~~~gi~~~~q~l~~--~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.+..+|+.+.++..+++....+|.. .|..++|+.-+... +..+..|++
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L 70 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLL 70 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEE
Confidence 5899999999999999987777775 67777766444322 444554444
No 251
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=81.60 E-value=5.6 Score=24.26 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=37.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
++.|--++|....+++..+++-.++=+++.++.|+|.+...
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 56777789999999999999999999999999999987664
No 252
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=81.26 E-value=3.4 Score=25.55 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=35.2
Q ss_pred EeeCCcchHHHHHHHHhhhcCCCCcce-------------EEEECCeecCCCCcc--cccCCCCCCEEEEEEeecCC
Q 031706 91 IDIEPTDTIERIKERVEEKEGIPPVQQ-------------RLIYAGKQLADDKTA--RDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~gi~~~~q-------------~l~~~g~~L~d~~~L--~~~~i~~~~~i~l~~~~~gg 152 (154)
+......||.+|-+.+++.+. .... .+..||+.. ..+ .++-+++|+.|.++=..-||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~~di---~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLINDTDW---ELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECCccc---cccCCcccCCCCcCEEEEECCCCCC
Confidence 334356799999999987762 2222 222344322 223 35678999999887766665
No 253
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=80.96 E-value=7.3 Score=23.42 Aligned_cols=53 Identities=21% Similarity=0.414 Sum_probs=40.0
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE-EcceEeecCccccccccccccceeeee
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
+..+...++...||.++-+. .|+|.....++ -||+.-+- +|-+++|++|.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 45678889999999998776 79998887766 57776543 36677899887654
No 254
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.69 E-value=6.1 Score=29.39 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=51.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE--cceEe-ec--Cccccccccccccceee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQL-ED--GRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L-~d--~~~L~~~~i~~~~~i~l 69 (154)
.+.|+.++|.++..++....+..++...|.-..+...+...|.- --..+ +| .++|..+++-+.+++.+
T Consensus 212 rlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 212 RLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred EEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 47889999999999999999999999999998887665444432 12223 22 34888888888877643
No 255
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=80.25 E-value=2.1 Score=27.83 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=32.7
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccc
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 58 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~ 58 (154)
..+-|+.+.||+++...|.++.+++++..-|+.++.......++++
T Consensus 43 KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 43 HFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 3346899999999999999999999987333344444444445443
No 256
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=79.95 E-value=10 Score=22.39 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=38.0
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~ 124 (154)
|..++|+.-.+.+.+-.|+.++-.++.++-|++++...++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 34578888899999999999999999999999999988875553
No 257
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=79.62 E-value=10 Score=22.46 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=36.4
Q ss_pred EEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE
Q 031706 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 45 (154)
.|-.++|+...+.+.++.|+.++-+..-+..+..|+.--|..
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 356789999999999999999999999999999988765554
No 258
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=79.48 E-value=11 Score=22.50 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=26.0
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCC
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 37 (154)
+...++.|+.++|..++-..+.++.++.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 6678899999999999999999999987
No 259
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=79.47 E-value=10 Score=22.32 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=37.9
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
|--+||..-.+.+.|..||.|.-.++-++.|++++.-.++..|
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g 46 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVG 46 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEec
Confidence 4567899899999999999999999999999999888877665
No 260
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=79.20 E-value=13 Score=23.21 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=34.5
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCC-cceEEE
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLI 120 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~-~~q~l~ 120 (154)
.+.|-..++...++.++.+.||+++-..+.++..++. .++++.
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 3455556777788999999999999999999998865 666666
No 261
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=79.04 E-value=6 Score=32.44 Aligned_cols=64 Identities=27% Similarity=0.468 Sum_probs=41.2
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhc--CCC------CcceEEEEC----Ce-ecCCC-------------CcccccCCCC
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA----GK-QLADD-------------KTARDYNIEG 139 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~q~l~~~----g~-~L~d~-------------~~L~~~~i~~ 139 (154)
...+.+.|-.++||.++|++|-+.. +.| +++.-|-|. |+ .|.|. +||+.|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3457888999999999999984332 222 455555432 22 34432 3699999999
Q ss_pred CCEEEEEEee
Q 031706 140 GSVLHLVLAL 149 (154)
Q Consensus 140 ~~~i~l~~~~ 149 (154)
|+++-++-+.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999888775
No 262
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=78.40 E-value=10 Score=22.55 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=30.0
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCC--CcceEEE
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIP--PVQQRLI 120 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~--~~~q~l~ 120 (154)
+...++.|+.++|..++-..+.++.+++ +.++.|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6667899999999999999999999986 6666666
No 263
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=77.73 E-value=9.8 Score=22.71 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=28.3
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCC--CCcceEE
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGI--PPVQQRL 119 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~q~l 119 (154)
...+.|+.++|+.++-+.+.+++++ .+..+.|
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L 51 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCL 51 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEE
Confidence 6789999999999999999999998 5666777
No 264
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=77.29 E-value=8 Score=23.72 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=33.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE-EEEcceEe
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQL 50 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g~~L 50 (154)
..+++.|+++.|=.++|+.+++.+|+++...+ +.+.|+.-
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~k 61 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKK 61 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCce
Confidence 57899999999999999999999999987765 44667643
No 265
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=77.09 E-value=16 Score=23.14 Aligned_cols=71 Identities=28% Similarity=0.303 Sum_probs=45.9
Q ss_pred EEEEeCC-CCEEEEEEcCCCcHHHHHHHHHhHh----C--CCCC-ceEEEEcce--EeecCccccccc-----cccccce
Q 031706 3 IFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGK--QLEDGRTLADYN-----IQKESTL 67 (154)
Q Consensus 3 v~v~~~~-g~~~~~~v~~~~tV~~lK~~i~~~~----~--i~~~-~q~L~~~g~--~L~d~~~L~~~~-----i~~~~~i 67 (154)
|.|...+ ...+++.+++++++.+|.+.+-.+. + -+++ +-.|--.|+ .|..+..|.+|. ++.|..+
T Consensus 20 v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~ 99 (108)
T smart00144 20 IVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREP 99 (108)
T ss_pred EEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCc
Confidence 3344333 3568999999999999998886652 1 2222 445555664 366777787776 4667777
Q ss_pred eeeeee
Q 031706 68 HLVLRL 73 (154)
Q Consensus 68 ~l~~~~ 73 (154)
++.+..
T Consensus 100 ~L~L~~ 105 (108)
T smart00144 100 HLVLMT 105 (108)
T ss_pred eEEEEe
Confidence 766543
No 266
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=77.02 E-value=9.4 Score=23.21 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=28.8
Q ss_pred cchHHHHHHHHh-hhcCCCC-c---ceEEEECCee----cCCCCcccccCCCCCCEEEEE
Q 031706 96 TDTIERIKERVE-EKEGIPP-V---QQRLIYAGKQ----LADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 96 ~~tV~~LK~~i~-~~~gi~~-~---~q~l~~~g~~----L~d~~~L~~~~i~~~~~i~l~ 146 (154)
..|+.+|-++|. .+.|... + ..+++|.... -...++|+++||.+|+.+.+.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 569999999874 4566432 1 2345554432 235788999999999988764
No 267
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=77.00 E-value=11 Score=29.87 Aligned_cols=71 Identities=23% Similarity=0.262 Sum_probs=53.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhC--CCCCceEEEEc----ceE--eecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~q~L~~~----g~~--L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
|-+.+++.+| ...+++.++++.+.|-.++-.-.. .+|+...+.-+ |.. +..+.++.+.|+++|..+++...
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~ys 79 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEYS 79 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEec
Confidence 6788888877 478999999999999998876653 45555555432 332 34567999999999999988873
No 268
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=76.97 E-value=12 Score=21.67 Aligned_cols=64 Identities=17% Similarity=0.353 Sum_probs=43.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
.+++.. +|+ +++++...|+.+|-+. .+++++.--...+|.....+ .-++.-+++|+.|.++--.
T Consensus 2 ~m~i~~-ng~--~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v 65 (68)
T COG2104 2 PMTIQL-NGK--EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVV 65 (68)
T ss_pred cEEEEE-CCE--EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEee
Confidence 344443 354 5666667999998766 67788777788999887532 2355667788888766443
No 269
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=76.92 E-value=11 Score=28.79 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=47.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+| ||+ .+++..+.||.+|-+. .+++++..-+.+||..+.. ..-.++-+++|+.|.+..-..||
T Consensus 1 M~I~V---NGk--~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr-~~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 1 MRIRL---NGE--PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR-SEYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred CEEEE---CCE--EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH-HHcCccccCCCCEEEEEEEecCC
Confidence 55554 555 4556677899888765 5788888888899988742 34456678999999888766555
No 270
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=76.86 E-value=7.2 Score=24.03 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=33.5
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE-EEEcceE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g~~ 49 (154)
...+.+.|+++.|=.++|+++++.+++++...+ +...|+.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~ 60 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCce
Confidence 468999999999999999999999999987765 4455554
No 271
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=76.62 E-value=7.3 Score=23.19 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEE
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L 43 (154)
..+.+.|+++.|=.++|++++..+++.+...+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 579999999999999999999999998876553
No 272
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.76 E-value=1.8 Score=34.43 Aligned_cols=59 Identities=24% Similarity=0.264 Sum_probs=50.6
Q ss_pred EEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
.++.+.+.|-++|...|.++.|++.+..+.+-+|+.++-..+|.+-|++.+....+...
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 45566677889999999999999999999999999999999999999988776655443
No 273
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=75.41 E-value=8.1 Score=23.69 Aligned_cols=40 Identities=25% Similarity=0.478 Sum_probs=34.5
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCee
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQ 125 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~ 125 (154)
...+.+.|+...|=.++|+.++..+|+++...+.. +.|+.
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 35789999999999999999999999999888665 66664
No 274
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=75.00 E-value=5.2 Score=24.94 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=26.5
Q ss_pred EEEECCeecCCCCccccc-CCCCCCEEEEEEeecCCC
Q 031706 118 RLIYAGKQLADDKTARDY-NIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 118 ~l~~~g~~L~d~~~L~~~-~i~~~~~i~l~~~~~gg~ 153 (154)
.|-|.|++|..+.+|++| |-.+-+.|.+-+..+|++
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g~g 39 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRGQG 39 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCCCC
Confidence 466899999999999999 234555666666666654
No 275
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=74.30 E-value=11 Score=25.56 Aligned_cols=45 Identities=29% Similarity=0.425 Sum_probs=34.2
Q ss_pred EEEEEEcC-CCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccc
Q 031706 12 TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60 (154)
Q Consensus 12 ~~~~~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~ 60 (154)
.+.+++.. .+.+..+++..++.+-++-+ +..|+.+....|++||-
T Consensus 76 ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhh
Confidence 47788887 77888888888887644332 34699999999999984
No 276
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=74.01 E-value=11 Score=25.36 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=34.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccc
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~ 60 (154)
.+.+++...+.+.++++...+.+-++-+ +..|+.+....|+.||-
T Consensus 75 rI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 75 RIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDYI 119 (150)
T ss_pred EEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhhh
Confidence 4677777888899999888887754432 34588899999999984
No 277
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=73.94 E-value=17 Score=21.99 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=39.8
Q ss_pred EEEcCCCcHHHHHHHHHhHhCC-------CCCceEEEEcce-Ee------ecCccccccccccccceeeeee
Q 031706 15 LEVESSDTIDNVKAKIQDKEGI-------PPDQQRLIFAGK-QL------EDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i-------~~~~q~L~~~g~-~L------~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
+++++++|+.+|-+.+.+.-.+ ..+...|++.+- .| +-+++|.+. +.+|+.|.+.-.
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~VtD~ 71 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVTDP 71 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEEET
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEECC
Confidence 5789999999999999887322 234456666542 12 235688998 889998877543
No 278
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=73.94 E-value=9 Score=23.23 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L 43 (154)
...+.+.|++..+=.++|++++..+|+.+..-+-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3679999999999999999999999998876553
No 279
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=73.61 E-value=16 Score=21.46 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=43.0
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCCCCcceEEEE-CCeecCCCCcccccCCCCCCEEEEE
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-AGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~-~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
..+.|+++.....+-+-.++.+.+|+....++. .|--++..++...-.++.|+.+.++
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 447788888788888888889999988888875 4667888888888888888887663
No 280
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=73.45 E-value=17 Score=21.79 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=26.9
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCC
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~ 39 (154)
+...++.|+.++|+.++-..+.++.+++.+
T Consensus 15 ~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 15 GTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 667889999999999999999999998753
No 281
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=72.91 E-value=9.2 Score=30.37 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=60.1
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecCC---CCcccccCCCCCCEEEEEEee
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLAD---DKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~d---~~~L~~~~i~~~~~i~l~~~~ 149 (154)
....+.|+.++|..+.-.++.++-...++.-+.+.-++....+.|- |..++..+ .++|.+..+.+...+.|+=+-
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 4467788888999988888888889999999998888888888775 66666542 678999999888887665443
Q ss_pred c
Q 031706 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
+
T Consensus 393 r 393 (506)
T KOG2507|consen 393 R 393 (506)
T ss_pred C
Confidence 3
No 282
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=72.79 E-value=6.7 Score=23.42 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.8
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhC
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEG 35 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~ 35 (154)
++++++.++|+.++|+.+.+...
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 57889999999999999987653
No 283
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=71.67 E-value=15 Score=26.98 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 44 (154)
+..|.+.++..+|-.+|-++|+++.+++|...+|+
T Consensus 189 ~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 189 DPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp ---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 35799999999999999999999999999988887
No 284
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=71.11 E-value=22 Score=22.72 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=30.7
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~ 124 (154)
....|++++|++.+-..+.+..+++.+++-+.|=+.
T Consensus 47 ~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~ 82 (116)
T KOG3439|consen 47 SKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNN 82 (116)
T ss_pred ceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcC
Confidence 457789999999999999999999999987776443
No 285
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=70.48 E-value=24 Score=22.31 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.3
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 38 (154)
++|-..+|.+..+.|..-.+-.++|.++-+++|.+.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566677999999999999999999999999999887
No 286
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.31 E-value=1.3 Score=35.25 Aligned_cols=57 Identities=19% Similarity=0.160 Sum_probs=47.1
Q ss_pred EeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
+..+-.-|-.+|...|+++.|++-...+.+.+|+.++-.+||.+.|++.+..+.+.+
T Consensus 54 ~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~ 110 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAV 110 (568)
T ss_pred hhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHh
Confidence 334445577899999999999999999999999999999999999998776554443
No 287
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=70.07 E-value=12 Score=23.61 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=33.0
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcc-eEEEECCeecCCCCccccc
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~-q~l~~~g~~L~d~~~L~~~ 135 (154)
.+-|+.+.||+++...|..+..++++. .-|+.++.....+.++++.
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~el 82 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGEL 82 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHHH
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHHH
Confidence 345788999999999999999997665 4555677556667776653
No 288
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=69.75 E-value=20 Score=21.10 Aligned_cols=62 Identities=18% Similarity=0.239 Sum_probs=50.5
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCeecCCCCcccccCCCCCCEEEEEEeecC
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
.+.|+++.....+-+-.++.+++|+....++ -.|--++..++-...-++.|+.+.++=|-|=
T Consensus 19 vlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrv 81 (82)
T cd01766 19 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRV 81 (82)
T ss_pred EEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccC
Confidence 4678888878888888889999998887766 5677788889999889999999988876653
No 289
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=69.30 E-value=16 Score=21.93 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=32.4
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g 123 (154)
+|.+..+.++..-|-+.|+++|+..+.+|+...-+.|-.
T Consensus 8 ~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiD 46 (82)
T cd06397 8 LGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYID 46 (82)
T ss_pred CCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEc
Confidence 566677777778899999999999999999887777743
No 290
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=69.08 E-value=22 Score=21.28 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCC--CcceEEE
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIP--PVQQRLI 120 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~--~~~q~l~ 120 (154)
++...++.|..++|+.++-..+.++.+++ +..+.|+
T Consensus 14 ~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 14 GGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred CCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 46677899999999999999999999985 4566666
No 291
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=68.65 E-value=16 Score=22.71 Aligned_cols=33 Identities=15% Similarity=0.265 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
...+.+.|++++|=.++|+++++.+|+-+..-.
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVN 53 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVN 53 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 467999999999999999999999998877654
No 292
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=67.86 E-value=22 Score=23.76 Aligned_cols=90 Identities=17% Similarity=0.274 Sum_probs=58.8
Q ss_pred EEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCcc------------ccccccccccceeeeeeeecceeeEEee
Q 031706 16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGTMIKVKT 83 (154)
Q Consensus 16 ~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~------------L~~~~i~~~~~i~l~~~~~~~~~i~v~~ 83 (154)
+.-|+.-|..|-.+.+-.-....+.-.+.++|+.|+++.. |..|.+.+|+.=...-...++-++.+.+
T Consensus 20 t~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~t 99 (149)
T PF10787_consen 20 TSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDT 99 (149)
T ss_pred ecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEe
Confidence 3346667777777777666667777788999999987653 6667777777643444445566777777
Q ss_pred cCCce-EEEeeCC-cchHHHHHHH
Q 031706 84 LTGKE-IEIDIEP-TDTIERIKER 105 (154)
Q Consensus 84 ~~g~~-~~~~v~~-~~tV~~LK~~ 105 (154)
..|+. +.+.+-+ .+-|.-+|+.
T Consensus 100 KkGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 100 KKGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred ccCcceeEEEEEecccHHHHHHHh
Confidence 76653 5544433 4456666654
No 293
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=67.56 E-value=28 Score=27.63 Aligned_cols=69 Identities=19% Similarity=0.347 Sum_probs=50.2
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcC--CCCcceEEEEC----Cee--cCCCCcccccCCCCCCEEEEEE
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG--IPPVQQRLIYA----GKQ--LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~g--i~~~~q~l~~~----g~~--L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.+.+++..| +..+++.++++.+.|-.++-.-.. ..|++..+.-+ |.. +..++++.+.|+..|..+++-.
T Consensus 2 i~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 2 IFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred eEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 345666566 567899999999999888866554 45666666522 221 3467899999999999999876
No 294
>PF09469 Cobl: Cordon-bleu ubiquitin-like domain; InterPro: IPR019025 The Cordon-bleu protein domain is highly conserved among vertebrates. The sequence contains three repeated lysine, arginine, and proline-rich regions, the KKRAP motif. The exact function of the protein is unknown but it is thought to be involved in mid-brain neural tube closure. It is expressed specifically in the node []. ; PDB: 2DAJ_A.
Probab=67.41 E-value=3.8 Score=24.36 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=21.7
Q ss_pred HHhhhcCCCCcceEEE---ECCeecCCCCcccccCCCC
Q 031706 105 RVEEKEGIPPVQQRLI---YAGKQLADDKTARDYNIEG 139 (154)
Q Consensus 105 ~i~~~~gi~~~~q~l~---~~g~~L~d~~~L~~~~i~~ 139 (154)
.|+++..+.|+...|. ..+.+|+=.++|.++||.+
T Consensus 2 ~IC~KCEfdp~htvLLrD~~s~e~LdLsKSLndlGirE 39 (79)
T PF09469_consen 2 AICEKCEFDPEHTVLLRDYQSGEELDLSKSLNDLGIRE 39 (79)
T ss_dssp HHHHHTT--TTSEEEES-SS---B--TTS-HHHHT-SE
T ss_pred ccccccccCcceEEEeecCCCCCcccccccHHHhhHHH
Confidence 4788889999998887 3567898899999999964
No 295
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=66.91 E-value=14 Score=23.64 Aligned_cols=59 Identities=8% Similarity=0.069 Sum_probs=39.3
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcc-eEEEECCeecCCCCcccccC---CCCCCEEEEEEe
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIYAGKQLADDKTARDYN---IEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~-q~l~~~g~~L~d~~~L~~~~---i~~~~~i~l~~~ 148 (154)
.+-|+.+.||+++...|..+..++++. ..|..++.....+.++++.- -.++.-+|+...
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys 106 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYS 106 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEe
Confidence 356999999999999999999987766 45555664444555554432 123556666554
No 296
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.81 E-value=11 Score=32.10 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=43.0
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEE----CCeec--CCCCcccccCCCCCCEEEEEE
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY----AGKQL--ADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~----~g~~L--~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.+.+.|+...+++.+|++|++..++|.+++++.. +|..+ .++.+|... -++.+|.+-+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~L 941 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKL 941 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEe
Confidence 4678899999999999999999999999998873 23333 356667643 4566655543
No 297
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=66.64 E-value=20 Score=22.02 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=33.7
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCe
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~ 124 (154)
...+.+.|+...|=.++|+.++..+++++...+-. ..|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 56889999999999999999999999999888665 5554
No 298
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=66.14 E-value=17 Score=21.94 Aligned_cols=42 Identities=26% Similarity=0.261 Sum_probs=33.3
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCC-CCcceEEE--ECCe--ecCCC
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGI-PPVQQRLI--YAGK--QLADD 129 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi-~~~~q~l~--~~g~--~L~d~ 129 (154)
.-++.|.+..|..+|-...+.+.++ .|++..|+ .+|. .|.|+
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 3568899999999999999999998 78888776 3444 45544
No 299
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=65.97 E-value=25 Score=20.76 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=33.5
Q ss_pred cchHHHHHHHHhhhcC-----CCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 96 TDTIERIKERVEEKEG-----IPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~g-----i~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..||.+|++.+.++.. ......+...|++.... +.-+++|+.|-++=+.-||
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 4799999999987762 11222344455543322 3468899999877666665
No 300
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=65.26 E-value=21 Score=30.51 Aligned_cols=97 Identities=18% Similarity=0.244 Sum_probs=60.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE----cceEe--ecCccccccccccccceeeee--ee-ecc--eeeE
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVL--RL-RGG--TMIK 80 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~----~g~~L--~d~~~L~~~~i~~~~~i~l~~--~~-~~~--~~i~ 80 (154)
.+.+.|+...++..+|+.|++..+++.+..+++- +|..+ .++.+|+.+- ++.+|.+.+ .+ .+. +.|+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~~--~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGAF--QSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhhc--ccceEEEEecCcCCCCceeeEEE
Confidence 4668889999999999999999999999988873 23333 3556777654 444444332 22 122 2222
Q ss_pred -EeecCCce------EEEeeCCcchHHHHHHHHhhhc
Q 031706 81 -VKTLTGKE------IEIDIEPTDTIERIKERVEEKE 110 (154)
Q Consensus 81 -v~~~~g~~------~~~~v~~~~tV~~LK~~i~~~~ 110 (154)
.+.....+ +..-+..+.|+++.|..+-+..
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L 992 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRML 992 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHH
Confidence 11222211 3344677899999988765443
No 301
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=65.24 E-value=10 Score=32.80 Aligned_cols=52 Identities=21% Similarity=0.408 Sum_probs=42.1
Q ss_pred CCCEEEEEEcC-CCcHHHHHHHHHhHhCCCCCceEEEEcce-EeecCccccccc
Q 031706 9 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADYN 60 (154)
Q Consensus 9 ~g~~~~~~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-~L~d~~~L~~~~ 60 (154)
.|...+++... ..|+.+||.+|++..|+....|.++-+|. -+..++.|..|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 46777777764 46899999999999999999999987654 466677888776
No 302
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=64.65 E-value=33 Score=21.66 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=44.5
Q ss_pred CceEEEeeCCcchHHHHHHHHhhh----cC--CCCc-ceEEEECCe--ecCCCCcccccC-----CCCCCEEEEEEeec
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEK----EG--IPPV-QQRLIYAGK--QLADDKTARDYN-----IEGGSVLHLVLALR 150 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~----~g--i~~~-~q~l~~~g~--~L~d~~~L~~~~-----i~~~~~i~l~~~~~ 150 (154)
...+++.++++.|+.+|.+.+-.+ .+ -+++ ++.|...|+ -|..+.+|.+|. +..|..+++.+..+
T Consensus 28 ~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~~ 106 (108)
T smart00144 28 QQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMTL 106 (108)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEec
Confidence 456889999999999998877554 11 2333 677777776 355667777763 46777888777643
No 303
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=64.21 E-value=15 Score=23.52 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=31.3
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcce-EeecCccccc
Q 031706 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLAD 58 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-~L~d~~~L~~ 58 (154)
+-|+.+.||+++...|.+...++++.--.+|-+. ....+.++++
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~ 89 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQ 89 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHH
Confidence 4589999999999999999998887644445443 3344445443
No 304
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=64.19 E-value=16 Score=23.13 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=29.2
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCCceE-EEEcceEeecCccccc
Q 031706 15 LEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLAD 58 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g~~L~d~~~L~~ 58 (154)
+-|+.+.||+++...|.+...++++.=- |+.++.....+.++++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 3478899999999999999999886422 3345544455556554
No 305
>CHL00030 rpl23 ribosomal protein L23
Probab=64.17 E-value=16 Score=22.55 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
...+.+.|+++.|=.++|++|+..+++.+..-.
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VN 51 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVN 51 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 467999999999999999999999998876654
No 306
>PF06622 SepQ: SepQ protein; InterPro: IPR009532 This family consists of several enterobacterial SepQ proteins from Escherichia coli and Citrobacter rodentium. The function of this family is unclear.
Probab=64.15 E-value=56 Score=24.07 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=50.8
Q ss_pred EcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEee--cCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeC
Q 031706 17 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIE 94 (154)
Q Consensus 17 v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~--d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~ 94 (154)
|--++|+..|...+.+-...-+.+|.|+|.|-... .+.++....+.+|-++........+-...+ .++..+.+...
T Consensus 137 Vlfdwp~~~L~~li~D~wq~~~~sqtl~~q~glv~GWtry~ltqL~vGDgLRl~~aad~k~~~CWLw--i~~Pq~yIKLs 214 (305)
T PF06622_consen 137 VLFDWPVQSLQYLINDNWQLVPHSQTLFFQGGLVPGWTRYPLTQLRVGDGLRLYHAADSKERCCWLW--INNPQAYIKLS 214 (305)
T ss_pred EEEeCcHHHHHHHHhhhhhccccccceeeecccccceeccceeEeecCCcEEEEeecccccCcEEEE--EcCceEEEEEc
Confidence 33578999999999998888889999999875432 234555555555555555544444433333 23333444433
Q ss_pred C-cchHHHH
Q 031706 95 P-TDTIERI 102 (154)
Q Consensus 95 ~-~~tV~~L 102 (154)
+ +.+|.++
T Consensus 215 DeNl~IqdV 223 (305)
T PF06622_consen 215 DENLMIQDV 223 (305)
T ss_pred cCCcchhhh
Confidence 2 3455555
No 307
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=64.05 E-value=21 Score=21.11 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=29.5
Q ss_pred cchHHHHHHHHhhhcCCCCcceEEE--ECCeecCCCCccc
Q 031706 96 TDTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKTAR 133 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~d~~~L~ 133 (154)
..+..+|+.+.++..+++....++. -.|.+++|+.-+.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~ 57 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQ 57 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHh
Confidence 4588999999999999986666665 4788887765444
No 308
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=63.70 E-value=11 Score=22.56 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhC
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEG 35 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~ 35 (154)
+.++++.++|+.++|+.+.+...
T Consensus 2 i~l~v~~~aTl~~IK~~lw~~A~ 24 (78)
T smart00143 2 VTLRVLREATLSTIKHELFKQAR 24 (78)
T ss_pred eeEEccccccHHHHHHHHHHHHH
Confidence 46889999999999999987653
No 309
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=63.60 E-value=28 Score=20.52 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=21.2
Q ss_pred EEEeCCC-CEEEEEEc-CCCcHHHHHHHHHhHhCC
Q 031706 4 FVKTLTG-KTITLEVE-SSDTIDNVKAKIQDKEGI 36 (154)
Q Consensus 4 ~v~~~~g-~~~~~~v~-~~~tV~~lK~~i~~~~~i 36 (154)
+-|..+. ..-.+.++ ...+|++||..|.++.+.
T Consensus 2 ~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 2 HYKFKSQKDYDTITFDGTSISVFDLKREIIEKKKL 36 (74)
T ss_dssp EEEETT-SSEEEEEESSSEEEHHHHHHHHHHHHT-
T ss_pred eEEecccCCccEEEECCCeeEHHHHHHHHHHHhCC
Confidence 3444443 34557776 357999999999776654
No 310
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=62.24 E-value=3.9 Score=31.48 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=43.2
Q ss_pred ecCCceEEEeeC-CcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcc
Q 031706 83 TLTGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTA 132 (154)
Q Consensus 83 ~~~g~~~~~~v~-~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L 132 (154)
..+|....+.+. .+..+..+|.++....+++++-|.+.+.|..+.|+.++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 457888888877 67889999999999999999999999999999887544
No 311
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=62.23 E-value=36 Score=21.23 Aligned_cols=70 Identities=23% Similarity=0.392 Sum_probs=41.5
Q ss_pred EEEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhH--hCCCCC----ceEEEEcce--EeecCccccccc-----cccccce
Q 031706 2 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKESTL 67 (154)
Q Consensus 2 ~v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~--~~i~~~----~q~L~~~g~--~L~d~~~L~~~~-----i~~~~~i 67 (154)
.|.|... ++..+++.++.++|+.+|-+.+-.+ .+..+. +-.|--.|. -|..+..|.+|. +..+..+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 4556665 4577999999999999998888766 222221 345555663 466777888886 3444445
Q ss_pred eeee
Q 031706 68 HLVL 71 (154)
Q Consensus 68 ~l~~ 71 (154)
++.+
T Consensus 98 ~L~L 101 (106)
T PF00794_consen 98 HLVL 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 312
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=62.23 E-value=23 Score=21.15 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=28.9
Q ss_pred cchHHHHHHHHhhhcCCCCcceEEE--ECCeecCCCCccc
Q 031706 96 TDTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKTAR 133 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~d~~~L~ 133 (154)
..+..+|+.+.+++.++|....++. -.|.+++|+.-+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~ 59 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQ 59 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHh
Confidence 4588999999999999976666665 4688887765444
No 313
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=61.90 E-value=12 Score=21.80 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=29.6
Q ss_pred chHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEE
Q 031706 97 DTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 97 ~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
+|+.+|.+..++++|+++ ...+.-.|-+++|=. -|.+|+.+++
T Consensus 26 ~SleeLl~ia~~kfg~~~-~~v~~~dgaeIdDI~-----~IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFSA-TKVLNEDGAEIDDID-----VIRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCCc-eEEEcCCCCEEeEEE-----EEEcCCEEEE
Confidence 699999999999999973 333445555555432 2567777776
No 314
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=61.84 E-value=34 Score=20.81 Aligned_cols=59 Identities=14% Similarity=0.322 Sum_probs=40.9
Q ss_pred EEeeCCcchHHHHHHHHhhhc-C--CCC--c-ceEEEECC--eecCCCCcccccCCCCCCEEEEEEe
Q 031706 90 EIDIEPTDTIERIKERVEEKE-G--IPP--V-QQRLIYAG--KQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~-g--i~~--~-~q~l~~~g--~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
-+.|+..+|..++-++++... | +++ . ..++.++| ..+..+.++++-||.+-..|.+...
T Consensus 18 Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 18 LVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 367888999999999986544 3 332 2 45666888 7889999999999999999988763
No 315
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=61.51 E-value=39 Score=21.40 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=27.4
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCC
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP 114 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~ 114 (154)
+.+-..+|++..++|....+-.+++.++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 445567999999999999999999999999999866
No 316
>PRK08453 fliD flagellar capping protein; Validated
Probab=59.90 E-value=44 Score=28.45 Aligned_cols=86 Identities=20% Similarity=0.291 Sum_probs=47.9
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHhHhC--C--------CCCceEEEEcceEeec------Cccccccccccccceeeee
Q 031706 8 LTGKTITLEVESSDTIDNVKAKIQDKEG--I--------PPDQQRLIFAGKQLED------GRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~--i--------~~~~q~L~~~g~~L~d------~~~L~~~~i~~~~~i~l~~ 71 (154)
.+|+.+.++|+..+|+.+|.++|-...+ + ..+..+|.+.+...-. ..+|++-.+..|.--.+..
T Consensus 135 ~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~~~ 214 (673)
T PRK08453 135 TQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLVDG 214 (673)
T ss_pred ECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcCCCceEEEeccccccccCCcccccccc
Confidence 3689999999999999999999984332 1 1113455554433211 1233333343333111111
Q ss_pred eeecceeeEEeecCCceEEEee
Q 031706 72 RLRGGTMIKVKTLTGKEIEIDI 93 (154)
Q Consensus 72 ~~~~~~~i~v~~~~g~~~~~~v 93 (154)
.-.+...|.++..+|+.+.+.+
T Consensus 215 ~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 215 SGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccceeeeeccCCccccccc
Confidence 2234467778777787664443
No 317
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=58.19 E-value=23 Score=28.27 Aligned_cols=82 Identities=12% Similarity=0.249 Sum_probs=59.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEee---cCccccccccccccceeeeeeeecc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
++.|+.++|..|+-.++.++-+..++..+.+..++......|- |--+... -.++|.++.+.+...+.++.+..
T Consensus 316 rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~r-- 393 (506)
T KOG2507|consen 316 RLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKKR-- 393 (506)
T ss_pred EEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecCC--
Confidence 5789999999999999999999999999998777766655553 4444442 24589999999988876665544
Q ss_pred eeeEEeecC
Q 031706 77 TMIKVKTLT 85 (154)
Q Consensus 77 ~~i~v~~~~ 85 (154)
....++...
T Consensus 394 ~t~s~~gss 402 (506)
T KOG2507|consen 394 ATVSQRGSS 402 (506)
T ss_pred cceEEecCc
Confidence 344444433
No 318
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.33 E-value=52 Score=20.36 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=45.0
Q ss_pred eeeeecceeeEEeecCCceEEEeeC-CcchHHHHHHHHhhhcCCCCcceEEEECCee-------cC--CCCcc--cccCC
Q 031706 70 VLRLRGGTMIKVKTLTGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRLIYAGKQ-------LA--DDKTA--RDYNI 137 (154)
Q Consensus 70 ~~~~~~~~~i~v~~~~g~~~~~~v~-~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~-------L~--d~~~L--~~~~i 137 (154)
-++..++..+......-...++++. ...||++|-..+...+--.+++ -++.+|.. ++ |..-| .+|.+
T Consensus 8 kvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~-lFi~~gsvrpGii~lINd~DWEllekedy~l 86 (101)
T KOG4146|consen 8 KVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDS-LFIHHGSVRPGIIVLINDMDWELLEKEDYPL 86 (101)
T ss_pred EEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcc-eEeeCCcCcCcEEEEEeccchhhhcccccCc
Confidence 3444455444333222222334433 3569999988887754332323 33344431 11 22222 47889
Q ss_pred CCCCEEEEEEeecCC
Q 031706 138 EGGSVLHLVLALRGG 152 (154)
Q Consensus 138 ~~~~~i~l~~~~~gg 152 (154)
++|+.|.++-.+-||
T Consensus 87 edgD~ivfiSTlHGg 101 (101)
T KOG4146|consen 87 EDGDHIVFISTLHGG 101 (101)
T ss_pred ccCCEEEEEEeccCC
Confidence 999999998888887
No 319
>PF01376 Enterotoxin_b: Heat-labile enterotoxin beta chain; InterPro: IPR001835 Escherichia coli heat-labile enterotoxin is a bacterial protein toxin with an AB5 multimer structure, in which the B pentamer has a membrane-binding function and the A chain (IPR001144 from INTERPRO) is needed for enzymatic activity []. The B subunits are arranged as a donut-shaped pentamer, each subunit participating in ~30 hydrogen bonds and 6 salt bridges with its two neighbours []. The A subunit has a less well-defined secondary structure. It predominantly interacts with the pentamer via the C-terminal A2 fragment, which runs through the charged central pore of the B subunits. A putative catalytic residue in the A1 fragment (Glu112) lies close to a hydrophobic region, which packs two loops together. It is thought that this region might be important for catalysis and membrane translocation [].; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1LTA_D 2XRS_O 1LTS_E 1LTT_H 1TET_P 1JQY_Y 1PZI_D 1DJR_E 1EEF_D 1LTB_E ....
Probab=52.94 E-value=24 Score=21.22 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhH
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~ 33 (154)
+.+...+|.+|.++|+.+.-+..-|..|+..
T Consensus 38 ~iitf~ngatfqvevpgsqhi~sqkk~ierm 68 (102)
T PF01376_consen 38 VIITFKNGATFQVEVPGSQHIDSQKKAIERM 68 (102)
T ss_dssp EEEEETTS-EEEE--SSTTSTTTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCCccchhhhHHHHHHH
Confidence 4566789999999999998887777777654
No 320
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=52.76 E-value=14 Score=28.47 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=50.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHh-CCCCCceEEEEcc---eEee--cCccccccccccccc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLIFAG---KQLE--DGRTLADYNIQKEST 66 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~~~g---~~L~--d~~~L~~~~i~~~~~ 66 (154)
.|.||.++|+.....+.++++|.-|=.-++.+. |.+-+..+|+.+= +.|. .+.|+.++||.+-.+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 378999999888888899999999888887665 5666777888654 4443 466999999988775
No 321
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=52.68 E-value=41 Score=20.00 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=31.1
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
...+.+.|+...|=.++|+.++..+++.+...+..
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~ 48 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTL 48 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 35889999999999999999999999998887665
No 322
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=52.61 E-value=37 Score=20.40 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=27.7
Q ss_pred cchHHHHHHHHhhhcCCCCcc--eEEE--ECCeecCCCCccc
Q 031706 96 TDTIERIKERVEEKEGIPPVQ--QRLI--YAGKQLADDKTAR 133 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~~~--q~l~--~~g~~L~d~~~L~ 133 (154)
..+..+|+.+.++...++... .++. -.|.+++|+.-+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEeyF~ 61 (80)
T cd06536 20 ASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDEDYFL 61 (80)
T ss_pred cCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHHHHh
Confidence 458899999999999998432 4544 5788887765444
No 323
>PRK01777 hypothetical protein; Validated
Probab=52.41 E-value=54 Score=20.28 Aligned_cols=53 Identities=9% Similarity=0.134 Sum_probs=36.7
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCCc-------ceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPPV-------QQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~-------~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
...+++++..||.++-... |++.. .-.+..+|+...- +.-+++|++|.++-.+
T Consensus 18 ~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~-----d~~L~dGDRVeIyrPL 77 (95)
T PRK01777 18 LQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKL-----TDVLRDGDRVEIYRPL 77 (95)
T ss_pred EEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCC-----CCcCCCCCEEEEecCC
Confidence 3678899999999987754 55433 2345566776643 3467899999987654
No 324
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=51.66 E-value=45 Score=22.84 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=32.4
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE-Ecce
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK 48 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~ 48 (154)
...+.|.|+++.|=.++|.+|+..+|+.+...+-+ ..|+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 36799999999999999999999999998776543 4443
No 325
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=51.31 E-value=40 Score=20.12 Aligned_cols=38 Identities=8% Similarity=0.126 Sum_probs=28.5
Q ss_pred cchHHHHHHHHhhhcCCCCcceEEE--ECCeecCCCCccc
Q 031706 96 TDTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKTAR 133 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~d~~~L~ 133 (154)
..+..+|+.+.++..+++....+|. -.|..++++.-+.
T Consensus 20 A~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~ 59 (78)
T cd06539 20 ASSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQ 59 (78)
T ss_pred ecCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHh
Confidence 3488999999999999986555554 5788887765444
No 326
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=50.95 E-value=50 Score=19.48 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=46.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE-cceEeecCccccccccccccceeeeeeee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
..+.|+.++....+-....+++.+|+..--++- .|.=+....+-...-++.|+.+.+..|.+
T Consensus 18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDr 80 (82)
T cd01766 18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDR 80 (82)
T ss_pred eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeeccccc
Confidence 346788888888888888888999987665554 45556777787787788888887776543
No 327
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=49.96 E-value=61 Score=20.15 Aligned_cols=72 Identities=22% Similarity=0.373 Sum_probs=43.9
Q ss_pred eeeEEeec-CCceEEEeeCCcchHHHHHHHHhhh--cCC----CCcceEEEECCe--ecCCCCcccccC-----CCCCCE
Q 031706 77 TMIKVKTL-TGKEIEIDIEPTDTIERIKERVEEK--EGI----PPVQQRLIYAGK--QLADDKTARDYN-----IEGGSV 142 (154)
Q Consensus 77 ~~i~v~~~-~g~~~~~~v~~~~tV~~LK~~i~~~--~gi----~~~~q~l~~~g~--~L~d~~~L~~~~-----i~~~~~ 142 (154)
+.+.|... .+..+++.++.+.|+.+|-+.+-.+ .+. +.+++.|...|. -|..+.+|.+|. +..+..
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 34444444 5567889999999999998887555 222 122677777775 466778888874 355666
Q ss_pred EEEEEe
Q 031706 143 LHLVLA 148 (154)
Q Consensus 143 i~l~~~ 148 (154)
+++.+.
T Consensus 97 ~~L~Lv 102 (106)
T PF00794_consen 97 PHLVLV 102 (106)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 666554
No 328
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=49.31 E-value=57 Score=19.63 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=34.5
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~ 46 (154)
..++ .+|.+..+.++..-+-..|++++...+.+|+...-+.|-
T Consensus 3 fKv~-~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYi 45 (82)
T cd06397 3 FKSS-FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYI 45 (82)
T ss_pred EEEE-eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEE
Confidence 4454 366777788887889999999999999999877777774
No 329
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=49.00 E-value=30 Score=21.58 Aligned_cols=79 Identities=18% Similarity=0.353 Sum_probs=39.5
Q ss_pred eeeeecceeeEEeecCCceEEEeeC---CcchHHHHHHHHhhhcCCCCcceEEEECCee--------cC--CCCcc--cc
Q 031706 70 VLRLRGGTMIKVKTLTGKEIEIDIE---PTDTIERIKERVEEKEGIPPVQQRLIYAGKQ--------LA--DDKTA--RD 134 (154)
Q Consensus 70 ~~~~~~~~~i~v~~~~g~~~~~~v~---~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~--------L~--d~~~L--~~ 134 (154)
.+...++..+... +.+.+.++++ ...|+++|-..+++..--+ +-.++..+.. .+ |..-+ .+
T Consensus 3 ~vEF~GGlE~Lf~--~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~--r~elF~~~~~vrPGILvLINd~DwEl~g~~~ 78 (96)
T PF09138_consen 3 TVEFSGGLELLFG--NQKKHKVSLPSDGEPATIKDLIDYLRDNLLKE--RPELFLEGGSVRPGILVLINDADWELLGEED 78 (96)
T ss_dssp EEEEETTCGGGTT--T-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SS--GHHHHBSSSSB-TTEEEEETTCEHHHHTCCC
T ss_pred EEEEcCcHHHHhC--CceeEEEEcCCCCCCcCHHHHHHHHHHhccCC--CHhHEecCCeEcCcEEEEEcCccceeecCcc
Confidence 3445555555433 3355666666 5679999988887643221 1112111111 11 11112 35
Q ss_pred cCCCCCCEEEEEEeecCC
Q 031706 135 YNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 135 ~~i~~~~~i~l~~~~~gg 152 (154)
|-+++|++|.++-.+-||
T Consensus 79 y~l~~~D~I~FiSTLHGG 96 (96)
T PF09138_consen 79 YVLKDGDNITFISTLHGG 96 (96)
T ss_dssp SB--TTEEEEEEETTT--
T ss_pred eEcCCCCEEEEEccCCCC
Confidence 899999999998888777
No 330
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=47.98 E-value=62 Score=19.64 Aligned_cols=35 Identities=3% Similarity=0.255 Sum_probs=27.2
Q ss_pred EEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcce
Q 031706 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 48 (154)
.+.|+.+.|++++...|+++.+++++.--.+|-+.
T Consensus 19 kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn 53 (87)
T cd01612 19 VFKISATQSFQAVIDFLRKRLKLKASDSLFLYINN 53 (87)
T ss_pred EEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECC
Confidence 45699999999999999999998876544444443
No 331
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.96 E-value=52 Score=19.93 Aligned_cols=35 Identities=17% Similarity=0.168 Sum_probs=31.4
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
...+.+.|++..+=.++|+.++..+++.+...+..
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~ 55 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTL 55 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeE
Confidence 46889999999999999999999999998888665
No 332
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=47.12 E-value=59 Score=19.14 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=23.7
Q ss_pred CEEEEEeCCCC---EEEEEEcCCCcHHHHHHHHHhHh
Q 031706 1 MQIFVKTLTGK---TITLEVESSDTIDNVKAKIQDKE 34 (154)
Q Consensus 1 m~v~v~~~~g~---~~~~~v~~~~tV~~lK~~i~~~~ 34 (154)
|+|+-|..++. .-++.+..++||.|+-.+|....
T Consensus 2 irvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di 38 (75)
T cd01666 2 IRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDL 38 (75)
T ss_pred EEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHH
Confidence 35555654432 24577888999999999998643
No 333
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=45.71 E-value=23 Score=27.13 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=38.7
Q ss_pred EEEeeCCcchHHHHHHHHhhhcC-C-CCcceEEEECCeecCCCCccccc
Q 031706 89 IEIDIEPTDTIERIKERVEEKEG-I-PPVQQRLIYAGKQLADDKTARDY 135 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~g-i-~~~~q~l~~~g~~L~d~~~L~~~ 135 (154)
-.+.++...||.+||.-+..+.+ + +..+..+++++..|.+..||.+.
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 34778889999999999999999 4 56666888998889998888743
No 334
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=45.61 E-value=58 Score=19.51 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=26.6
Q ss_pred cchHHHHHHHHhhhcCCCCcceEE--EECCeecCCCCccc
Q 031706 96 TDTIERIKERVEEKEGIPPVQQRL--IYAGKQLADDKTAR 133 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~~~q~l--~~~g~~L~d~~~L~ 133 (154)
..+..+|+.+.++..+++. ..+| .-.|.+++|+.-+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~-~~~lvL~eDGT~Vd~EeyF~ 58 (79)
T cd06538 20 ADSLEDLLNKVLDALLLDC-ISSLVLDEDGTGVDTEEFFQ 58 (79)
T ss_pred cCCHHHHHHHHHHHcCCCC-ccEEEEecCCcEEccHHHHh
Confidence 4588999999999999953 3444 35788887765444
No 335
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=45.54 E-value=68 Score=19.44 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCC-CCceEEEE--cc--eEeecC
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF--AG--KQLEDG 53 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~-~~~q~L~~--~g--~~L~d~ 53 (154)
...++.|.|.+|..+|-..+++++.+. |+.-.|++ +| ..|.|+
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~vdg~~~qLadd 61 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLFVEETWQQLAPD 61 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEEECCcEEEcCcc
Confidence 447899999999999999999999964 66667663 34 345554
No 336
>CHL00030 rpl23 ribosomal protein L23
Probab=45.27 E-value=60 Score=20.06 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=32.6
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCe
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~ 124 (154)
...+.+.|+...|=.++|+.++..+++.+...+.. ..|+
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 46889999999999999999999999988887655 3443
No 337
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=44.70 E-value=24 Score=19.73 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=21.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHh
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 32 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~ 32 (154)
|.|.+.+.+|..|.++...-.--.-++..++.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~a~~S~~i~~ml~~ 32 (62)
T PF03931_consen 1 MYVKLVSSDGQEFEVSREAAKQSKTIKNMLED 32 (62)
T ss_dssp -EEEEEETTSEEEEEEHHHHTTSHHHHHHHHC
T ss_pred CEEEEEcCCCCEEEeeHHHHHHhHHHHHHHhh
Confidence 67899999999999885443334445555554
No 338
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=44.59 E-value=42 Score=18.98 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=11.8
Q ss_pred hhcCCCCcceEEEECCeecC
Q 031706 108 EKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 108 ~~~gi~~~~q~l~~~g~~L~ 127 (154)
...|.|+-...|..+|+.+.
T Consensus 6 ~v~g~P~p~v~W~k~~~~l~ 25 (76)
T cd05736 6 HAEGIPLPRLTWLKNGMDIT 25 (76)
T ss_pred EeeecCCCEEEEEECCEECC
Confidence 34455655666666666554
No 339
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=44.50 E-value=66 Score=18.94 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhC
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEG 35 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~ 35 (154)
+.|-.-..++.|+++|+..|.+++.
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~ 27 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFK 27 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHH
Confidence 3455667899999999999998875
No 340
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=44.49 E-value=50 Score=22.25 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
...+.+.|+...+=.++|++|++.+++.+....
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVN 114 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVN 114 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEE
Confidence 468999999999999999999999999876554
No 341
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=44.43 E-value=46 Score=19.74 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=32.3
Q ss_pred HHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEE
Q 031706 100 ERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 100 ~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
..++..++..+|.+.+..++..+...=.-...+..-.+.-|..|++
T Consensus 4 ~~~r~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G~~I~f 49 (79)
T PF13699_consen 4 ESIRSRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVGNDIYF 49 (79)
T ss_pred HHHHHHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEECCEEEE
Confidence 3678999999999999999988743222223344445677888876
No 342
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=44.09 E-value=38 Score=19.29 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=23.6
Q ss_pred ccccccccccccceeeeeeeecceeeEEeecCCceEEE
Q 031706 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (154)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~ 91 (154)
..|.++|+.+|+.|.+.-+...+-.+.++. ++..+.+
T Consensus 26 ~~L~~lGl~~G~~i~v~~~~~~~~~~~i~~-~~~~i~L 62 (74)
T PF04023_consen 26 RRLADLGLTPGSEITVIRKNPFGGPVVIKV-DGSRIAL 62 (74)
T ss_dssp HHHHHCT-STTEEEEEEEEETTSSEEEEEE-TTEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEc
Confidence 368899999999998886654444454544 3544443
No 343
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=44.04 E-value=74 Score=19.42 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=25.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcce
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 48 (154)
-.+.++.+.|++.+-..+.++.++.+++.-.+|-+.
T Consensus 18 ~k~kI~~~~~f~~vi~fLrk~Lk~~~~~slFlYin~ 53 (87)
T PF04110_consen 18 KKFKISASQTFATVIAFLRKKLKLKPSDSLFLYINN 53 (87)
T ss_dssp -EEEEETTSBTHHHHHHHHHHCT----SS-EEEEEE
T ss_pred cEEEECCCCchHHHHHHHHHHhCCccCCeEEEEEcC
Confidence 457899999999999999999998776666555443
No 344
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=43.59 E-value=54 Score=23.34 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=33.9
Q ss_pred cccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcC-CCCcceEEEECC
Q 031706 63 KESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG-IPPVQQRLIYAG 123 (154)
Q Consensus 63 ~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~g-i~~~~q~l~~~g 123 (154)
.|+|+|++-...++-++..+ ..+.+.+.+|...|.++|...+. +-|...+++..|
T Consensus 132 sG~TVH~V~e~vD~GpII~Q------~~Vpv~~~Dt~etl~~RV~~~Eh~lyp~~v~~~~~g 187 (200)
T COG0299 132 SGCTVHFVTEGVDTGPIIAQ------AAVPVLPGDTAETLEARVLEQEHRLYPLAVKLLAEG 187 (200)
T ss_pred cCcEEEEEccCCCCCCeEEE------EeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67788877654322222222 24778899999999999976654 344444444433
No 345
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=41.96 E-value=81 Score=19.59 Aligned_cols=61 Identities=21% Similarity=0.284 Sum_probs=42.3
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCee---------cCCCCcccccCCCCCCEEEE
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQ---------LADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~---------L~d~~~L~~~~i~~~~~i~l 145 (154)
....+.+.|++..|=-++|+.+++.+|+.+...+.. ..|+. +..+..-+.--+..|..|.+
T Consensus 20 ~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~k~~G~~~~~kka~V~l~~G~~i~~ 90 (94)
T COG0089 20 KENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGVKRIGLRKDYKKAYVTLKEGQSIDF 90 (94)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCcceEEeccccccCcccceeEEEccCCCEEee
Confidence 456889999999999999999999999988887654 44431 23333344444455555443
No 346
>KOG3483 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.67 E-value=75 Score=18.83 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=46.7
Q ss_pred EeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+.++++...-.+-+--++.+.+|+....++ ..|.-++..++-...-++.|+.+.++=|-+=|
T Consensus 31 ~svpestpftavlkfaaeefkvpaatsaiitndgiginpaq~agnvflkhgselr~iprdrvg 93 (94)
T KOG3483|consen 31 LSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 93 (94)
T ss_pred ecCCCCCchHHHHHHHHHHccCCccceeEEecCccccCccccccceeeccCCEEEeccccccC
Confidence 556777777677667778889998887776 45666777777777788999999888776544
No 347
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=41.55 E-value=27 Score=22.51 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=23.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHH
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKI 30 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i 30 (154)
|+|.+.. +++.+..++..+.|..+|.+++
T Consensus 1 mkI~i~i-~~~~~~a~L~d~~ta~~~~~~L 29 (120)
T PF04126_consen 1 MKIKITI-GGQEIEAELNDSPTARAFAAQL 29 (120)
T ss_dssp EEEEEEE-TTEEEEEEEETTHHHHHHHHC-
T ss_pred CeEEEEE-CCEEEEEEECCCHHHHHHHHhC
Confidence 7888876 5788999999998888888876
No 348
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=40.77 E-value=65 Score=17.82 Aligned_cols=58 Identities=12% Similarity=0.124 Sum_probs=35.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceee
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (154)
|+|..++|+... ++...|+.|+=..|....+-.. --=..+|+..+-+. .+++|+++.+
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~--~~A~Vng~~vdl~~-----~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRA--VAAKVNGQLVDLDH-----PLEDGDVVEI 58 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCE--EEEEETTEEEETTS-----BB-SSEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhe--eEEEEcCEECCCCC-----CcCCCCEEEE
Confidence 456668888665 7888999999999987753111 11225665554443 3455666654
No 349
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=39.63 E-value=75 Score=18.43 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=28.8
Q ss_pred hhcCCCCcceEEEECCeecCCCCccccc--CCCCCCEEEEEEee
Q 031706 108 EKEGIPPVQQRLIYAGKQLADDKTARDY--NIEGGSVLHLVLAL 149 (154)
Q Consensus 108 ~~~gi~~~~q~l~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~~ 149 (154)
++.|+.+.+.-+..+|+.+.+...+..+ ....|+++.+.+.-
T Consensus 28 ~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R 71 (82)
T PF13180_consen 28 AKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLR 71 (82)
T ss_dssp HHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEE
T ss_pred HHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEE
Confidence 3567888888888888888665554433 45678888777764
No 350
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=39.56 E-value=57 Score=23.16 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=18.3
Q ss_pred EEeeCCcchHHHHHHHHhhhcC
Q 031706 90 EIDIEPTDTIERIKERVEEKEG 111 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~g 111 (154)
.+.|.+.+|+.+|-+++...+.
T Consensus 161 ~v~V~~~Dt~esl~qrv~~aEH 182 (206)
T KOG3076|consen 161 AVPVIPGDTLESLEQRVHDAEH 182 (206)
T ss_pred eeeecCCCCHHHHHHHHHHHHH
Confidence 4778899999999999976664
No 351
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=39.28 E-value=32 Score=22.89 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.2
Q ss_pred eecCCCCcccccCCCCCCEEEEEEeec
Q 031706 124 KQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 124 ~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
+-.+|+++|+.++++-|+-|.+.+..+
T Consensus 112 Kg~ddnktL~~~kf~iGD~lDVaI~~p 138 (151)
T KOG3391|consen 112 KGIDDNKTLQQTKFEIGDYLDVAITPP 138 (151)
T ss_pred ccCCccchhhhCCccccceEEEEecCc
Confidence 456799999999999999999987654
No 352
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=39.18 E-value=25 Score=26.94 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=38.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhC-C-CCCceEEEEcceEeecCcccccc
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEG-I-PPDQQRLIFAGKQLEDGRTLADY 59 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~-i-~~~~q~L~~~g~~L~d~~~L~~~ 59 (154)
-.+.++...||.+||.-+..+.+ . +..+.-+++++..|.+..||.+.
T Consensus 166 ~fvrcsa~~Tv~hlkkfl~~k~~~~~~~~~idi~~~d~~l~~~~TLk~i 214 (331)
T KOG2660|consen 166 RFLRCSAAATVNHLKKFLRKKMDNLSNKSEIDILCEEELLGDYYTLKDI 214 (331)
T ss_pred ceEeccHHHHHHHHHHHHHHHhccccchhhheeecCCccccchhhhhhh
Confidence 45778888999999999999998 3 44455688888899999998854
No 353
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=38.04 E-value=17 Score=21.02 Aligned_cols=20 Identities=40% Similarity=0.353 Sum_probs=14.7
Q ss_pred hHHHHHHHHhhhcCCCCcce
Q 031706 98 TIERIKERVEEKEGIPPVQQ 117 (154)
Q Consensus 98 tV~~LK~~i~~~~gi~~~~q 117 (154)
|+.++.+.+++.+|+++++.
T Consensus 1 t~~~Ii~~Va~~~~v~~~~i 20 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVEDI 20 (70)
T ss_dssp -HHHHHHHHHHHTT--HHHH
T ss_pred CHHHHHHHHHHHHCCCHHHH
Confidence 67899999999999987664
No 354
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=37.98 E-value=1.1e+02 Score=19.60 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=29.4
Q ss_pred CEEEEEeCCCCE--EEEEEcCCCcHHHHHHHHHhHhCCC
Q 031706 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 1 m~v~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~~~i~ 37 (154)
|+.++...+++. -.+.|+.++|+.++.+.+-+++.+.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d 62 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPD 62 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhccc
Confidence 567777666644 4588999999999999999998754
No 355
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=37.82 E-value=1.8e+02 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~l 26 (154)
+|++...+|+...+++.++.|+-+.
T Consensus 4 ~v~~~~~~~~~~~~~~~~g~tlL~a 28 (340)
T PRK11872 4 KVALSFADGKTLFFPVGKDELLLDA 28 (340)
T ss_pred EEEEEecCCcEEEEEeCCCCcHHHH
Confidence 5667666888888999999998775
No 356
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=37.61 E-value=91 Score=23.95 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=41.6
Q ss_pred EEEEcCCCcHHHHHHHHHhHh--------------C-CCCCceEEEEcceEeecCccccccc---cccccceeeeee
Q 031706 14 TLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVLR 72 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~--------------~-i~~~~q~L~~~g~~L~d~~~L~~~~---i~~~~~i~l~~~ 72 (154)
.+..+.-..|..++..|.++. . .|.+...|+++|+.|+.+.||+... =+.+.-|.|..|
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR 327 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYR 327 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEE
Confidence 455555567888899988887 2 4566788999999999999887654 244444545544
No 357
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=37.57 E-value=88 Score=18.85 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=26.3
Q ss_pred cchHHHHHHHHhhhcCCCCcceEEE--ECCeecCCCCccc
Q 031706 96 TDTIERIKERVEEKEGIPPVQQRLI--YAGKQLADDKTAR 133 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~d~~~L~ 133 (154)
..+..+|+.+.++...++.. .+|. -.|..++++.-+.
T Consensus 20 A~sL~EL~~K~~~~L~~~~~-~~lvLeeDGT~Vd~EeyF~ 58 (81)
T cd06537 20 AASLQELLAKALETLLLSGV-LTLVLEEDGTAVDSEDFFE 58 (81)
T ss_pred ccCHHHHHHHHHHHhCCCCc-eEEEEecCCCEEccHHHHh
Confidence 34789999999999998632 4444 5677887665444
No 358
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=36.40 E-value=1.5e+02 Score=22.71 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=46.5
Q ss_pred EEeeCCcchHHHHHHHHhhhc--------------C-CCCcceEEEECCeecCCCCcccccC---CCCCCEEEEEEeecC
Q 031706 90 EIDIEPTDTIERIKERVEEKE--------------G-IPPVQQRLIYAGKQLADDKTARDYN---IEGGSVLHLVLALRG 151 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~--------------g-i~~~~q~l~~~g~~L~d~~~L~~~~---i~~~~~i~l~~~~~g 151 (154)
.+..+....|..++..|.++. . -|-+...|.++|..|..+.||+... .+.+..|.|..|..+
T Consensus 251 rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k~ 330 (331)
T PF11816_consen 251 RLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRKG 330 (331)
T ss_pred eecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEecC
Confidence 455555567888888888887 2 3455568889999999888876554 688888888888765
No 359
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=35.07 E-value=99 Score=21.19 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=33.3
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCe
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~ 124 (154)
...+.|.|++..|=.++|+.|+..+++.+...+.. ..|+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K 61 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKK 61 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCc
Confidence 35799999999999999999999999998888665 4443
No 360
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=34.94 E-value=1.5e+02 Score=20.15 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=31.7
Q ss_pred EEEEEEcCCC-cHHHHHHHHHhHhCCCCCceEEEEcceEeecCcccccccccccc
Q 031706 12 TITLEVESSD-TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (154)
Q Consensus 12 ~~~~~v~~~~-tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~ 65 (154)
.+.+++.+.+ ++..+++-..+..-+.. . ++-|+.+...-|+.|| ++.|.
T Consensus 84 ri~~eie~e~~~~e~ie~ic~e~lPf~y---~-v~vG~F~r~kpTVTDy-~KyG~ 133 (165)
T COG4055 84 RIILEIEDEDETMEKIEEICDEMLPFGY---E-VRVGKFTRRKPTVTDY-IKYGE 133 (165)
T ss_pred EEEEEecCcHhHHHHHHHHHHHhCCCce---e-eeeeeeeccCCcchhh-hhhCc
Confidence 4677777765 66666666655543222 2 3568889998999988 34444
No 361
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=34.51 E-value=1.1e+02 Score=18.56 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC-ceEEEEc
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA 46 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~ 46 (154)
+|..+...++++.|..+|.+++......+.. ...+.|-
T Consensus 8 ~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~ 46 (83)
T cd06404 8 NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWI 46 (83)
T ss_pred cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 6788889999999999999999999887653 3455553
No 362
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=34.49 E-value=1.1e+02 Score=18.62 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=40.9
Q ss_pred EEEEEcCCCcHHHHHHHHHhHh-C--CCC--C-ceEEEEcc--eEeecCccccccccccccceeeee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~-~--i~~--~-~q~L~~~g--~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
.-+.|+.++|..++=+++.... | +++ . ..++..+| ..+..+.++++-||.+-+.|.+..
T Consensus 17 ~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~ 83 (85)
T PF06234_consen 17 QLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRF 83 (85)
T ss_dssp EEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEE
Confidence 4578999999999999997653 4 322 2 35666888 889999999999999988877654
No 363
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=33.72 E-value=44 Score=19.74 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=25.5
Q ss_pred cccccccccccceeeeeeeecce--eeEEeecCCceE-----EEeeCCcchHHHHHHHHhhhcC
Q 031706 55 TLADYNIQKESTLHLVLRLRGGT--MIKVKTLTGKEI-----EIDIEPTDTIERIKERVEEKEG 111 (154)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~--~i~v~~~~g~~~-----~~~v~~~~tV~~LK~~i~~~~g 111 (154)
.-.+|-+.+||+|.+.+.....+ ...| ..+|... .+.+ ...|+.++++.|.++..
T Consensus 7 ~~~~y~l~pGD~l~i~v~~~~~l~~~~~V-~~dG~I~lP~iG~v~v-~G~T~~e~~~~I~~~l~ 68 (82)
T PF02563_consen 7 APPEYRLGPGDVLRISVFGWPELSGEYTV-DPDGTISLPLIGPVKV-AGLTLEEAEEEIKQRLQ 68 (82)
T ss_dssp HT------TT-EEEEEETT-HHHCCSEE---TTSEEEETTTEEEE--TT--HHHHHHHHHHHHT
T ss_pred CCCCCEECCCCEEEEEEecCCCcccceEE-CCCCcEeecccceEEE-CCCCHHHHHHHHHHHHH
Confidence 34678889999998887654333 2222 2345321 1333 35699999999987765
No 364
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=33.66 E-value=55 Score=25.41 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=48.0
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhc-CCCCcceEEEECC---eecC--CCCcccccCCCCCCE
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKE-GIPPVQQRLIYAG---KQLA--DDKTARDYNIEGGSV 142 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~-gi~~~~q~l~~~g---~~L~--d~~~L~~~~i~~~~~ 142 (154)
.|.||.++|+.....+-.+++|.-|-.-..... |-+-..++|...- +.|. .+.|+.++||.+..+
T Consensus 279 ~i~vR~pdG~R~qrkf~~sepv~ll~~~~~s~~dg~~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS~~ 349 (356)
T KOG1364|consen 279 SIQVRFPDGRRKQRKFLKSEPVQLLWSFCYSHMDGSDKKRFKLVQAIPASKTLDYGADATFKEAGLANSET 349 (356)
T ss_pred EEEEecCCccHHHHhhccccHHHHHHHHHHHhhcccccccceeeecccchhhhhccccchHHHhccCcccc
Confidence 378999999876666677888888877765544 4667777887543 4443 577999999998765
No 365
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=33.33 E-value=1.1e+02 Score=18.13 Aligned_cols=40 Identities=20% Similarity=0.197 Sum_probs=32.3
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
|.+..++.+.-.+++-|+.|+.+--.+.-+..|+.|+.=.
T Consensus 2 ir~~LPnqQrT~V~vrpG~tl~daL~KaLk~R~l~pe~C~ 41 (74)
T cd01816 2 IRVFLPNKQRTVVNVRPGMTLRDALAKALKVRGLQPECCA 41 (74)
T ss_pred eeEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCChhHeE
Confidence 4566677777889999999999988888889998875433
No 366
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=31.87 E-value=68 Score=19.50 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=9.4
Q ss_pred CCCCcceEEEECCeecCC
Q 031706 111 GIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 111 gi~~~~q~l~~~g~~L~d 128 (154)
|-|+-...|..+|+.|.+
T Consensus 26 G~p~p~v~W~kdg~~l~~ 43 (98)
T cd05762 26 GTQPITCTWMKFRKQIQE 43 (98)
T ss_pred ccCCCceEEEECCEEecC
Confidence 444445555555555543
No 367
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=30.84 E-value=1e+02 Score=20.76 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHHHhHhCCCCCceEEEEcceEe-------ecCccccccccccccceeeeeeeecceeeEEeecCCceEEE
Q 031706 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-------EDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (154)
Q Consensus 19 ~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L-------~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~ 91 (154)
+-.+..++|+.|.....+--.....+|+--+. +|...|+.. .....+.+.-.+.|.-.+.|...+|..+.-
T Consensus 11 ~vLsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfy~Cs~~eeD~~Ll~RL--~~~~NVTvRNDPDGRsRLNvNiFtGdviVT 88 (153)
T PF08756_consen 11 EVLSLDEMREAIHRLLDIRDPNVWMLFGTLPFYPCSDDEEDLALLKRL--RSEPNVTVRNDPDGRSRLNVNIFTGDVIVT 88 (153)
T ss_pred ccCCHHHHHHHHHHHHhccCCCeeEEecccccccCCCCHHHHHHHHHH--HhCCCCeeecCCCccceeeeeEecCCEEEe
Confidence 34688999999999999887777777764321 122233333 233334445556777788888888887776
Q ss_pred eeCCcchHHHHH
Q 031706 92 DIEPTDTIERIK 103 (154)
Q Consensus 92 ~v~~~~tV~~LK 103 (154)
++...-+++.++
T Consensus 89 DFgD~~~lgNI~ 100 (153)
T PF08756_consen 89 DFGDEPPLGNIQ 100 (153)
T ss_pred cCCCCCCccccc
Confidence 666555555554
No 368
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton]
Probab=30.64 E-value=88 Score=20.06 Aligned_cols=44 Identities=7% Similarity=0.100 Sum_probs=32.8
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCeecCCCCccc
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLADDKTAR 133 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~L~d~~~L~ 133 (154)
.+-|+...||+++-..|..+..+++++-.++ .++.....+.+++
T Consensus 48 KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfVn~~~p~ts~~ms 92 (116)
T KOG1654|consen 48 KYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFVNNTSPPTSATMS 92 (116)
T ss_pred eeeccccccHHHHHHHHHHHhccChhHeEEEEEcCcCCcchhhHH
Confidence 4568888999999999999999988877665 5565554444433
No 369
>COG1918 FeoA Fe2+ transport system protein A [Inorganic ion transport and metabolism]
Probab=30.35 E-value=54 Score=19.34 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=17.5
Q ss_pred CcccccCCCCCCEEEEEEeecCC
Q 031706 130 KTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+.|.+.|+.+|+.|.+.-+.+.|
T Consensus 25 ~RL~~mG~~~G~~i~vi~~aplg 47 (75)
T COG1918 25 RRLLSMGIVPGASITVVRKAPLG 47 (75)
T ss_pred HHHHHcCCCCCCEEEEEEecCCC
Confidence 45777788888888888777776
No 370
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=30.16 E-value=1.4e+02 Score=18.62 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=26.8
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCC---CCcceEEE
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGI---PPVQQRLI 120 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi---~~~~q~l~ 120 (154)
.++.|+.++|+.++-...-+++|. .+++++|.
T Consensus 19 ~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~Lv 53 (97)
T cd01783 19 VSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLI 53 (97)
T ss_pred EEEEecccchHHHHHHHHHHHhCcccCCccccEEE
Confidence 468899999999999999999996 45677775
No 371
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=30.09 E-value=76 Score=17.72 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=13.3
Q ss_pred hcCCCCcceEEEECCeecCC
Q 031706 109 KEGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 109 ~~gi~~~~q~l~~~g~~L~d 128 (154)
..|.|.-...|..+|+.+.+
T Consensus 8 ~~G~P~p~v~W~k~g~~l~~ 27 (74)
T cd05748 8 ISGRPTPTVTWSKDGKPLKL 27 (74)
T ss_pred EeeeCCCeEEEEECCEEcCC
Confidence 34666667777777777643
No 372
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=29.52 E-value=73 Score=18.08 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.0
Q ss_pred hhcCCCCcceEEEECCeecCCC
Q 031706 108 EKEGIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 108 ~~~gi~~~~q~l~~~g~~L~d~ 129 (154)
+..|.|.-...|..+|+.+..+
T Consensus 6 ~v~G~P~P~v~W~k~g~~l~~~ 27 (70)
T cd05864 6 KYYGYPPPEVKWYKNGQLIVLN 27 (70)
T ss_pred EEEEeCCCEEEEEECCEECCCC
Confidence 3457888888999999888654
No 373
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=29.35 E-value=1e+02 Score=20.07 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=18.7
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCC
Q 031706 15 LEVESSDTIDNVKAKIQDKEGIPPD 39 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i~~~ 39 (154)
++++.+.|+++|-+.++++.|..+.
T Consensus 37 ~~v~~~~Tl~~li~~~~~~~~lev~ 61 (125)
T PF09358_consen 37 IEVNGDMTLQELIDYFKEKYGLEVT 61 (125)
T ss_dssp EEEES--BHHHHHHHHHHTTS-EEE
T ss_pred EEEcCCCCHHHHHHHHHHHhCceEE
Confidence 5666689999999999999987764
No 374
>PRK09555 feoA ferrous iron transport protein A; Reviewed
Probab=29.02 E-value=66 Score=18.80 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=18.9
Q ss_pred CcccccCCCCCCEEEEEEeecCC
Q 031706 130 KTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+.|.+.|+.+|+.|.+.-+.+-|
T Consensus 24 ~rL~~mGl~pG~~V~v~~~aP~g 46 (74)
T PRK09555 24 QKLLSLGMLPGSSFNVVRVAPLG 46 (74)
T ss_pred HHHHHcCCCCCCEEEEEEECCCC
Confidence 56888899999999998888744
No 375
>PF14044 NETI: NETI protein
Probab=29.02 E-value=73 Score=17.77 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.6
Q ss_pred EEEcCCCcHHHHHHHHHhH
Q 031706 15 LEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~ 33 (154)
++|..+.||++--+++.+.
T Consensus 2 FeV~enETI~~CL~RM~~e 20 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKE 20 (57)
T ss_pred eeccCCCcHHHHHHHHHHc
Confidence 5788899999988888764
No 376
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=28.98 E-value=1.6e+02 Score=18.82 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=22.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
++|++...+|...++++.++.|+.+.-.+
T Consensus 1 ~~V~fi~~~G~~~~v~~~~G~tLl~a~~~ 29 (117)
T PLN02593 1 ISVTFVDKDGEERTVKAPVGMSLLEAAHE 29 (117)
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHH
Confidence 46777778899999999999888775433
No 377
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=28.62 E-value=1.3e+02 Score=17.83 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=32.3
Q ss_pred CcchHHHHHHHHhhhcC---CCCcceEEE--ECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 95 PTDTIERIKERVEEKEG---IPPVQQRLI--YAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 95 ~~~tV~~LK~~i~~~~g---i~~~~q~l~--~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...|+++|.+++.++.. .-.....++ .+...+.+. ++-+++|++|.++=+.-||
T Consensus 26 ~~~tv~~L~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~t~L~dGDeVa~~PPVsGG 84 (84)
T COG1977 26 VGATVGELEELLPKEGERWLLALEDNIVVNAANNEFLVGL----DTPLKDGDEVAFFPPVSGG 84 (84)
T ss_pred HHHHHHHHHHHHHhhhhhHHhccCccceEEeeeceeeccc----cccCCCCCEEEEeCCCCCC
Confidence 36799999999866654 222212211 233333322 3468899999887666665
No 378
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=28.42 E-value=1.4e+02 Score=23.66 Aligned_cols=69 Identities=22% Similarity=0.237 Sum_probs=42.2
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGNL 154 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~~ 154 (154)
.|+...+-++-..|...+++.+.+.. .+..+.++-|-...-......-.|.-+.|--|.++-+++||+|
T Consensus 142 eGkIr~~GFSfHgs~e~~~~iv~a~~-~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l 210 (391)
T COG1453 142 EGKIRNAGFSFHGSTEVFKEIVDAYP-WDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGL 210 (391)
T ss_pred cCcEEEeeecCCCCHHHHHHHHhcCC-cceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCc
Confidence 56666677777889999999887643 3333333333222211111333344456778889999999984
No 379
>PRK00529 elongation factor P; Validated
Probab=28.03 E-value=1.7e+02 Score=20.41 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=19.9
Q ss_pred cCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCC
Q 031706 52 DGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP 95 (154)
Q Consensus 52 d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~ 95 (154)
|..+-.++.+..+..=.....+..++.+.+...+++.+.++++.
T Consensus 84 D~etyeq~~l~~~~lg~~~~~L~eg~~v~v~~~~~~~i~v~lP~ 127 (186)
T PRK00529 84 DTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEPISVELPN 127 (186)
T ss_pred cCCCceeeEcCHHHhHHHHhhccCCCEEEEEEECCEEEEEECCC
Confidence 44455555554332111112234455555555566555555443
No 380
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=27.89 E-value=35 Score=18.85 Aligned_cols=20 Identities=45% Similarity=0.509 Sum_probs=16.7
Q ss_pred hHHHHHHHHhhhcCCCCcce
Q 031706 98 TIERIKERVEEKEGIPPVQQ 117 (154)
Q Consensus 98 tV~~LK~~i~~~~gi~~~~q 117 (154)
|+.++.+.+++.+|+++++.
T Consensus 1 ~~~~I~~~Va~~~~i~~~~i 20 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPEDL 20 (60)
T ss_pred CHHHHHHHHHHHhCCCHHHH
Confidence 46788999999999987774
No 381
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=27.80 E-value=1.2e+02 Score=18.31 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=29.9
Q ss_pred ceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecC
Q 031706 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA 127 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~ 127 (154)
+.+++.++...+..++.+.+....+--..+..++ |.|..+.
T Consensus 8 RDiS~~v~~~~~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~ 50 (94)
T PF03147_consen 8 RDISFVVPEDVPFADIEEVIRSAGGPLLESVELFDVYRGEKLP 50 (94)
T ss_dssp EEEEEEEETTS-HHHHHHHHHHHHTTTEEEEEEEEEEESTTSG
T ss_pred ccEEEEECCCCCHHHHHHHHHHhCccceeEEEEEEEEcCCCCC
Confidence 3577888888899999999988776556666665 7775554
No 382
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=27.71 E-value=1.5e+02 Score=20.72 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=11.8
Q ss_pred ecceeeEEeecCCceEEEeeCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEP 95 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~ 95 (154)
..++.+.+...+|+.+.++++.
T Consensus 105 ~eg~~v~v~~~~~~~i~v~lP~ 126 (184)
T TIGR00038 105 KENMEVSVTFYNGEPIGVELPN 126 (184)
T ss_pred CCCCEEEEEEECCEEEEEECCC
Confidence 3455555555566555555443
No 383
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=27.05 E-value=1.1e+02 Score=16.87 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=14.2
Q ss_pred hhcCCCCcceEEEECCeecCC
Q 031706 108 EKEGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 108 ~~~gi~~~~q~l~~~g~~L~d 128 (154)
...|.|.-...|..+|+.+..
T Consensus 6 ~~~g~P~p~i~W~k~g~~~~~ 26 (69)
T cd05746 6 SAQGDPEPTITWNKDGVQVTE 26 (69)
T ss_pred cceEeCCCEEEEEECCEECCC
Confidence 445667666788888877653
No 384
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=27.01 E-value=86 Score=26.39 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=26.7
Q ss_pred EEEEEeCCCCEEEEEEcCC---------CcHHHHHHHHHhHhCCC
Q 031706 2 QIFVKTLTGKTITLEVESS---------DTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~---------~tV~~lK~~i~~~~~i~ 37 (154)
.|+|+..+|+...+....+ -|+++||..|++++|..
T Consensus 250 ~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~ 294 (603)
T PRK05841 250 NITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLD 294 (603)
T ss_pred EEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhccccc
Confidence 5777877887755554433 47999999999988753
No 385
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=26.87 E-value=1.4e+02 Score=20.09 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=21.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNV 26 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~l 26 (154)
+|+|...+|...++++.+..|+-+.
T Consensus 37 ~I~~~~~dG~~~~v~~~~G~sLLea 61 (143)
T PTZ00490 37 KVCVKKRDGTHCDVEVPVGMSLMHA 61 (143)
T ss_pred EEEEEcCCCCEEEEEECCCccHHHH
Confidence 5778888899999999999998775
No 386
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=26.68 E-value=73 Score=19.75 Aligned_cols=50 Identities=12% Similarity=0.331 Sum_probs=27.0
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccc
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 64 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~ 64 (154)
+++......|+..+.+...+....+....+++. ...+++.|+-.|-+.+|
T Consensus 45 lP~~~~~~ls~~~i~~~f~~l~~~~~~~~ri~L--Aiv~~DsTiVYY~i~~G 94 (101)
T PF09631_consen 45 LPVPLTEKLSLEQIDEVFDSLPNPSGDPKRILL--AIVDDDSTIVYYKIHDG 94 (101)
T ss_dssp EEEETT-EEEHHHHHHHHHHHHHHCT---EEEE--EEE-TTS-EEEEEEE--
T ss_pred EeeccCCCcCHHHHHHHHHHhcccCCCCcEEEE--EEEcCCCCEEEEEEeCC
Confidence 345566677888888887766544433445544 34456777777766655
No 387
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=26.60 E-value=92 Score=17.48 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=15.6
Q ss_pred hhcCCCCcceEEEECCeecCCC
Q 031706 108 EKEGIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 108 ~~~gi~~~~q~l~~~g~~L~d~ 129 (154)
+..|.|+-...|..+|+.+.++
T Consensus 6 ~v~g~P~p~v~W~k~g~~l~~~ 27 (71)
T cd04976 6 KVKAYPPPEIQWYKNGKLISEK 27 (71)
T ss_pred EEEEeCCCEEEEEECCEECCCC
Confidence 3456776678888888887654
No 388
>PRK02135 hypothetical protein; Provisional
Probab=26.49 E-value=86 Score=22.40 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=35.4
Q ss_pred cccccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcC
Q 031706 57 ADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG 111 (154)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~g 111 (154)
-+.+++.+.++++++.-.......|+-.+.+...+.-++..+.+-+|+.+....+
T Consensus 42 lSh~iR~Dv~v~lvL~g~p~p~~tI~f~G~~lr~l~PDErs~a~~I~kAL~~~~~ 96 (201)
T PRK02135 42 LSHDIRRDVRVHLVLEGTPDPPKTIRFEGSELRRLNPDERSTAALIKKALDASEG 96 (201)
T ss_pred HhcCccCCeEEEEEEcCCCCCCeEEEEechhcccCCccHHHHHHHHHHHHhcccc
Confidence 3456788888888877555555555553433334555666788888888876643
No 389
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.63 E-value=1.2e+02 Score=22.83 Aligned_cols=23 Identities=9% Similarity=-0.005 Sum_probs=19.1
Q ss_pred EEEeeCCcchHHHHHHHHhhhcC
Q 031706 89 IEIDIEPTDTIERIKERVEEKEG 111 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~g 111 (154)
..+.+.+.+|..+|.+++.+.+.
T Consensus 238 ~~v~I~~~dt~~~L~~r~~~~E~ 260 (286)
T PRK13011 238 DVERVDHAYSPEDLVAKGRDVEC 260 (286)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 35889999999999999976554
No 390
>PRK08453 fliD flagellar capping protein; Validated
Probab=25.47 E-value=2.7e+02 Score=23.93 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=31.5
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcC-------C---CCcceEEEECCeecC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEG-------I---PPVQQRLIYAGKQLA 127 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~g-------i---~~~~q~l~~~g~~L~ 127 (154)
+|+++.++|+...|+.+|+.+|-...+ + ....++|...+...-
T Consensus 136 ~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG~~~~y~L~l~s~etG 188 (673)
T PRK08453 136 QGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTGGNDPYQLMINSKNTG 188 (673)
T ss_pred CCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecCCCccEEEEEeccCcC
Confidence 699999999999999999999974331 1 112477777666554
No 391
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=25.26 E-value=1.3e+02 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.1
Q ss_pred EEEeeCCcchHHHHHHHHhhhcC
Q 031706 89 IEIDIEPTDTIERIKERVEEKEG 111 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~g 111 (154)
..+.+.+++|..+|.+++.+.+.
T Consensus 233 ~~v~I~~~dt~~~L~~ri~~~E~ 255 (280)
T TIGR00655 233 DVVRVDHTDNVEDLIRAGRDIEK 255 (280)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999977654
No 392
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=25.00 E-value=1.3e+02 Score=20.63 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=21.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
|.|++. .||+.+.++++|.+++.++-..
T Consensus 2 ~~i~lt-vNG~~~~~~~~p~~~Ll~~LRd 29 (156)
T COG2080 2 MPITLT-VNGEPVELDVDPRTPLLDVLRD 29 (156)
T ss_pred CcEEEE-ECCeEEEEEeCCCChHHHHHHH
Confidence 345554 5899999999999998876543
No 393
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=24.69 E-value=1.5e+02 Score=16.97 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=15.8
Q ss_pred hhhcCCCCcceEEEECCeecC
Q 031706 107 EEKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 107 ~~~~gi~~~~q~l~~~g~~L~ 127 (154)
++..|-|+-...|..+|..+.
T Consensus 5 C~a~G~P~P~i~W~k~g~~l~ 25 (77)
T cd05874 5 CEAKGKPPPSFSWTRNGTHFD 25 (77)
T ss_pred eeCcccCCCeEEEEECCeECC
Confidence 455677888888888888774
No 394
>PF06251 Caps_synth_GfcC: Capsule biosynthesis GfcC; InterPro: IPR010425 This entry represents uncharacterised bacterial proteins that contain a central beta-grasp like domain related to the SLBB domain [].; PDB: 3P42_B.
Probab=24.09 E-value=1.9e+02 Score=20.77 Aligned_cols=84 Identities=10% Similarity=0.104 Sum_probs=34.6
Q ss_pred cccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCeecCC---CCcccccC
Q 031706 61 IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLAD---DKTARDYN 136 (154)
Q Consensus 61 i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~L~d---~~~L~~~~ 136 (154)
++.|+++.+.-++. .|.|-..-.....+...+..+|.+--...-...+-..+..-++ -+|....- -..-..+.
T Consensus 116 L~ggd~L~vP~rp~---~V~V~G~V~~p~~~~~~~g~sv~dYl~~~g~~~~Ad~s~v~VI~pdG~v~~~~~a~Wn~~~~~ 192 (229)
T PF06251_consen 116 LEGGDRLYVPPRPN---TVSVLGAVQNPTSVPYQPGLSVSDYLDSAGPTSGADKSRVYVIQPDGSVQKVPVAYWNNQHQE 192 (229)
T ss_dssp -ECEEEEE-----S---EEEEEESBTT-EEEE--TT--HHHHHTTS-B-TTB-SSEEEEE-TTS-EEEEE-STTT--EEE
T ss_pred CCCCcEEEECCCCC---EEEEEEccCCcceeeccCCCCHHHHHHhCCCccCCCcccEEEEeCCCcEEEcceehhccCCCC
Confidence 46677776655443 4555444445556667777777776654432222344454455 45554321 11122356
Q ss_pred CCCCCEEEEEE
Q 031706 137 IEGGSVLHLVL 147 (154)
Q Consensus 137 i~~~~~i~l~~ 147 (154)
+.+|++|+|=+
T Consensus 193 l~PG~~I~Vp~ 203 (229)
T PF06251_consen 193 LAPGATIYVPF 203 (229)
T ss_dssp --TT-EEEE-B
T ss_pred CCCCCEEEEcC
Confidence 88999998866
No 395
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=24.04 E-value=1.8e+02 Score=17.65 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=30.8
Q ss_pred eEEEeeCCcchHHHHHHH--H-hhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 88 EIEIDIEPTDTIERIKER--V-EEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~--i-~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
...++++...||.+--+. + ...-.+..+..++-..|+.... ++-+++|+.|++.-.+
T Consensus 15 ~~~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vGIfGk~~~~-----d~~L~~GDRVEIYRPL 74 (84)
T PF03658_consen 15 ILTLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVGIFGKLVKL-----DTVLRDGDRVEIYRPL 74 (84)
T ss_dssp EEEEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEEEEE-S--T-----T-B--TT-EEEEE-S-
T ss_pred EEEEECCCcCcHHHHHHHcCchhhCcccCcccceeeeeeeEcCC-----CCcCCCCCEEEEeccC
Confidence 466889999998876553 2 2223467777888766776653 3466799999987665
No 396
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=24.02 E-value=1.1e+02 Score=25.88 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=26.5
Q ss_pred ceeeEEeecCCceEE--EeeC----C---cchHHHHHHHHhhhcCCC
Q 031706 76 GTMIKVKTLTGKEIE--IDIE----P---TDTIERIKERVEEKEGIP 113 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~--~~v~----~---~~tV~~LK~~i~~~~gi~ 113 (154)
.+.+.++..+|++.. +... . -.|+++||.+|++++|+.
T Consensus 248 ~~~i~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~l~~~~~~~~~~~ 294 (603)
T PRK05841 248 KLNITIQKEDGKKEDFVFTYGDAEKGENQFKTLGDLKKLLKEKTGLD 294 (603)
T ss_pred eEEEEEecCCCcEEEEEEeecCccccCCceeechhhhhhhhhccccc
Confidence 356677777776644 4444 1 248999999999999854
No 397
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=23.80 E-value=1.5e+02 Score=16.70 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=34.0
Q ss_pred EEEEEeCCCC----EEEEEEcCCCcHHHHHHHHHhHh--CCCCCceEEEEcceEeec
Q 031706 2 QIFVKTLTGK----TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLED 52 (154)
Q Consensus 2 ~v~v~~~~g~----~~~~~v~~~~tV~~lK~~i~~~~--~i~~~~q~L~~~g~~L~d 52 (154)
+|.+.+..++ .-++.|+.+.|..+|-+.+.+.. .-.+-..-++.+|..+.+
T Consensus 3 ~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 3 QVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeec
Confidence 3455555552 24588999999999999998877 233334456667776654
No 398
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.73 E-value=24 Score=22.44 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=15.1
Q ss_pred CCCcccccCCCCCCEEEEE
Q 031706 128 DDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 128 d~~~L~~~~i~~~~~i~l~ 146 (154)
+.++|..|||.+...|.++
T Consensus 93 ~~ktL~~~GIenETEis~F 111 (127)
T KOG4147|consen 93 EDKTLKAAGIENETEISFF 111 (127)
T ss_pred ccchHHHhccCcchhhhhh
Confidence 5788999999988877543
No 399
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=23.45 E-value=2e+02 Score=17.97 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=30.8
Q ss_pred eCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEE
Q 031706 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 7 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L 43 (154)
.+.+..-.+.|+.++|+.++-+.+-+++.+.-+.+++
T Consensus 13 lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kF 49 (96)
T cd01778 13 LPKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKF 49 (96)
T ss_pred ccCCceeEEEEecCCcHHHHHHHHHHhheeccCCcce
Confidence 3467778899999999999999999999887666654
No 400
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=23.28 E-value=90 Score=20.19 Aligned_cols=27 Identities=33% Similarity=0.577 Sum_probs=14.3
Q ss_pred HHHHHHHhhhcCCCCcceEEEECCeecC
Q 031706 100 ERIKERVEEKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 100 ~~LK~~i~~~~gi~~~~q~l~~~g~~L~ 127 (154)
...++.+.+ .|+++++..++++|-..+
T Consensus 148 ~~~~~~l~~-~~~~~~ki~vI~ngid~~ 174 (177)
T PF13439_consen 148 ESTKDELIK-FGIPPEKIHVIYNGIDTD 174 (177)
T ss_dssp HHHHHHHHH-HT--SS-EEE----B-CC
T ss_pred HHHHHHHHH-hCCcccCCEEEECCccHH
Confidence 456777777 889999999999997653
No 401
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=23.14 E-value=1.6e+02 Score=16.78 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=9.6
Q ss_pred CCCCcceEEEECCeecCC
Q 031706 111 GIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 111 gi~~~~q~l~~~g~~L~d 128 (154)
|.|+-...|+.+|+.+.+
T Consensus 20 g~P~p~i~W~k~g~~l~~ 37 (85)
T cd05857 20 GNPTPTMRWLKNGKEFKQ 37 (85)
T ss_pred CCCCCEEEEEECCEECCC
Confidence 344445566666665543
No 402
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=23.14 E-value=1.1e+02 Score=17.32 Aligned_cols=19 Identities=11% Similarity=0.099 Sum_probs=10.9
Q ss_pred cCCCCcceEEEECCeecCC
Q 031706 110 EGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 110 ~gi~~~~q~l~~~g~~L~d 128 (154)
.|.|.-...|..+++.+.+
T Consensus 11 ~g~P~p~v~W~k~~~~l~~ 29 (73)
T cd05852 11 KAAPKPKFSWSKGTELLVN 29 (73)
T ss_pred ceeCCCEEEEEeCCEeccc
Confidence 4555556666666665543
No 403
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=22.83 E-value=1.4e+02 Score=16.51 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=11.3
Q ss_pred cCCCCcceEEEECCeecCC
Q 031706 110 EGIPPVQQRLIYAGKQLAD 128 (154)
Q Consensus 110 ~gi~~~~q~l~~~g~~L~d 128 (154)
.|.|.-...|.++|+.+.+
T Consensus 11 ~g~P~p~i~W~~~g~~~~~ 29 (76)
T cd04978 11 EGIPQPTITWRLNGVPIEE 29 (76)
T ss_pred eeeCCCEEEEEECCEECCC
Confidence 3555555667667766643
No 404
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=22.57 E-value=2.2e+02 Score=18.17 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=36.7
Q ss_pred cCccccccccccccceeeeeeeecceeeE---EeecCCceEEEeeCCcch--HHHHHHHHhhhcC
Q 031706 52 DGRTLADYNIQKESTLHLVLRLRGGTMIK---VKTLTGKEIEIDIEPTDT--IERIKERVEEKEG 111 (154)
Q Consensus 52 d~~~L~~~~i~~~~~i~l~~~~~~~~~i~---v~~~~g~~~~~~v~~~~t--V~~LK~~i~~~~g 111 (154)
++...-.+|+..||.|.+.... +.... ++..+..++.+-+.+... ..++.+.+.+ .|
T Consensus 17 ~n~Pf~a~glA~gDvV~~~~~~--g~~~~~~~v~~sGnsTiRv~~~~~~~~~~~~v~~~l~~-lG 78 (117)
T PF14085_consen 17 DNIPFFAYGLALGDVVRAEPDD--GELWFQKVVESSGNSTIRVIFDDPGPDDIEAVREELEA-LG 78 (117)
T ss_pred EecccccCCCCCCCEEEEEeCC--CeEEEEEEEecCCCEEEEEEEcCCcchhHHHHHHHHHH-cC
Confidence 3456778899999999777665 33333 233455677777766555 6777777764 44
No 405
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=22.50 E-value=1.1e+02 Score=19.36 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=17.7
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEc
Q 031706 23 IDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 23 V~~lK~~i~~~~~i~~~~q~L~~~ 46 (154)
-..|-+.++++.|+|+++.-+.|.
T Consensus 76 s~~i~~~l~~~LgIp~~Riyi~f~ 99 (114)
T PF01187_consen 76 SAAITEFLEEELGIPPDRIYINFH 99 (114)
T ss_dssp HHHHHHHHHHHHT--GGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcCceEEEEE
Confidence 455777888999999999888874
No 406
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=22.48 E-value=1.7e+02 Score=21.41 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.9
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHh
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKE 34 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~ 34 (154)
++|.++++++.||.++-..|.+..
T Consensus 24 ~~y~v~~~~~~tvLdaL~~Ik~~~ 47 (239)
T PRK13552 24 VTYQLEETPGMTLFIALNRIREEQ 47 (239)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcC
Confidence 347788889999999999998764
No 407
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.38 E-value=1.5e+02 Score=22.44 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=19.3
Q ss_pred EEEeeCCcchHHHHHHHHhhhcC
Q 031706 89 IEIDIEPTDTIERIKERVEEKEG 111 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~g 111 (154)
..+.|.+.+|..+|.+++.+.+.
T Consensus 242 ~~v~V~~~dt~e~L~~r~~~~E~ 264 (289)
T PRK13010 242 DVERVDHSYSPEDLVAKGRDVEC 264 (289)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999977664
No 408
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=21.80 E-value=1.2e+02 Score=17.16 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=14.3
Q ss_pred hhhcCCCCcceEEEECCeecC
Q 031706 107 EEKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 107 ~~~~gi~~~~q~l~~~g~~L~ 127 (154)
+...|.|.-...|..+|+.+.
T Consensus 8 C~a~G~P~P~i~W~k~g~~i~ 28 (76)
T cd05868 8 CRANGNPKPSISWLTNGVPIE 28 (76)
T ss_pred EEeeEeCCCeEEEEECCEEcc
Confidence 344566766778888887765
No 409
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=21.73 E-value=1.1e+02 Score=18.07 Aligned_cols=43 Identities=28% Similarity=0.552 Sum_probs=31.6
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC---CceEEE-EcceEe
Q 031706 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI-FAGKQL 50 (154)
Q Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~---~~q~L~-~~g~~L 50 (154)
.+|+.+.+.++..+++.=+-++...+.+.++ ..+++. ++|..+
T Consensus 7 Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~~v~~a~G~~~ 53 (91)
T cd05484 7 VNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKKRLRTATGTKL 53 (91)
T ss_pred ECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccEEEEecCCCEe
Confidence 3788899999999999999898888888653 333443 555543
No 410
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=21.71 E-value=1.7e+02 Score=16.70 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=15.6
Q ss_pred hhhcCCCCcceEEEECCeecC
Q 031706 107 EEKEGIPPVQQRLIYAGKQLA 127 (154)
Q Consensus 107 ~~~~gi~~~~q~l~~~g~~L~ 127 (154)
++..|.|.-...|..+|+.+.
T Consensus 5 C~~~G~P~P~v~W~k~g~~~~ 25 (77)
T cd05875 5 CEAKGNPVPTFQWTRNGKFFN 25 (77)
T ss_pred EeccccCCCEEEEEECCEEcc
Confidence 345677888888988888663
No 411
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.64 E-value=62 Score=18.02 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=16.1
Q ss_pred eCCcchHHHHHHHHhhhcCCCCcc
Q 031706 93 IEPTDTIERIKERVEEKEGIPPVQ 116 (154)
Q Consensus 93 v~~~~tV~~LK~~i~~~~gi~~~~ 116 (154)
++...|+.++-+.+++.++++++.
T Consensus 26 ~~g~~t~~ei~~~l~~~y~~~~~~ 49 (68)
T PF05402_consen 26 LDGPRTVEEIVDALAEEYDVDPEE 49 (68)
T ss_dssp --SSS-HHHHHHHHHHHTT--HHH
T ss_pred ccCCCCHHHHHHHHHHHcCCCHHH
Confidence 456679999999999999887753
No 412
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.59 E-value=3.2e+02 Score=19.74 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=31.0
Q ss_pred ccccccccceeeeeeeecceeeEEee-cCCce-EEE--eeC-CcchHHHHHHHHhhhc
Q 031706 58 DYNIQKESTLHLVLRLRGGTMIKVKT-LTGKE-IEI--DIE-PTDTIERIKERVEEKE 110 (154)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~~~~i~v~~-~~g~~-~~~--~v~-~~~tV~~LK~~i~~~~ 110 (154)
+|-+.+||+|.+.+-........+.. .+|.. +++ ++. ...|+.++.+.|..+.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l 58 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRL 58 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHH
Confidence 47788899888887654333332222 24432 211 122 3568999988887665
No 413
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=21.50 E-value=2.6e+02 Score=18.84 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=26.6
Q ss_pred cccccccceeeeeeeecceeeEEee-cCCce-EE----EeeCCcchHHHHHHHHhhhc
Q 031706 59 YNIQKESTLHLVLRLRGGTMIKVKT-LTGKE-IE----IDIEPTDTIERIKERVEEKE 110 (154)
Q Consensus 59 ~~i~~~~~i~l~~~~~~~~~i~v~~-~~g~~-~~----~~v~~~~tV~~LK~~i~~~~ 110 (154)
|-+.+||.+.+.+-........+.. .+|.. ++ +.+ .-.|+.++++.|.++.
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V~~dG~I~lP~iG~v~v-~G~T~~e~~~~I~~~l 57 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPVRPDGKITTPLVGDLVA-SGKTPTQLARDIEEKL 57 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEECCCCeEeecccCeEEE-CCCCHHHHHHHHHHHH
Confidence 3456777776666543333322222 23322 11 222 2458888888887665
No 414
>PF09581 Spore_III_AF: Stage III sporulation protein AF (Spore_III_AF); InterPro: IPR014245 This family represents the stage III sporulation protein AF (SpoIIIAF) of the bacterial endospore formation program, which exists in some but not all members of the Firmicutes (formerly called low-GC Gram-positives). The C-terminal region of these proteins is poorly conserved.
Probab=21.45 E-value=83 Score=21.70 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.4
Q ss_pred CcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 95 PTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 95 ~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
.+....++++.++..+|+|+++..+.
T Consensus 162 ~~~~~~~i~~~la~~~~i~~~~I~V~ 187 (188)
T PF09581_consen 162 DSEEEEEIKQYLADFYGISPEQIKVY 187 (188)
T ss_pred chHHHHHHHHHHHHHhCCCHHHeEEe
Confidence 45689999999999999999987764
No 415
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=21.36 E-value=2.9e+02 Score=20.35 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=38.9
Q ss_pred EEEEEeCCCCE--EEEEEcCCCcHHHHHHHHHhH--------hCCCCCceEEEEcceEeecCcccccc
Q 031706 2 QIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLEDGRTLADY 59 (154)
Q Consensus 2 ~v~v~~~~g~~--~~~~v~~~~tV~~lK~~i~~~--------~~i~~~~q~L~~~g~~L~d~~~L~~~ 59 (154)
.|..-..+|.. -.+.|...+||..+-++..+. ..+.+++.-++-++-++..+.++-++
T Consensus 100 ~I~fsywDGs~hrr~v~vKKGdtI~~FL~~~r~~l~~~f~el~~vsvd~LM~VkedlIiPHhy~FY~f 167 (239)
T PF04921_consen 100 EIPFSYWDGSGHRRTVRVKKGDTIWQFLEKCRKQLAKEFRELRRVSVDDLMYVKEDLIIPHHYTFYDF 167 (239)
T ss_pred EEEEEEECCCCCcceEEEcCCCCHHHHHHHHHHHHHHHhHHHHhcCHhheeeeccceeccCCceeeee
Confidence 34555566643 469999999999988887666 34666655555556666666666554
No 416
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=21.36 E-value=70 Score=15.88 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=10.0
Q ss_pred CcchHHHHHHHHhhh
Q 031706 95 PTDTIERIKERVEEK 109 (154)
Q Consensus 95 ~~~tV~~LK~~i~~~ 109 (154)
.+.||.+||..+.+.
T Consensus 2 ~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 2 KSLTVAQLKRILDEH 16 (35)
T ss_dssp TT--SHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 357899999988653
No 417
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=21.13 E-value=1.9e+02 Score=16.92 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=15.2
Q ss_pred EEEEEeCCCCEEEEEEcCCC
Q 031706 2 QIFVKTLTGKTITLEVESSD 21 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~ 21 (154)
+|.+...+|+.+.+.+++.+
T Consensus 57 ev~~~~~dG~~~ev~vD~~t 76 (83)
T PF13670_consen 57 EVEARDKDGKKVEVYVDPAT 76 (83)
T ss_pred EEEEEECCCCEEEEEEcCCC
Confidence 46667778888888888754
No 418
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=21.07 E-value=1.9e+02 Score=16.79 Aligned_cols=40 Identities=20% Similarity=0.327 Sum_probs=19.0
Q ss_pred eeeeeeeecceeeEEeecCCc-eEEEeeCCcchHHHHHHHH
Q 031706 67 LHLVLRLRGGTMIKVKTLTGK-EIEIDIEPTDTIERIKERV 106 (154)
Q Consensus 67 i~l~~~~~~~~~i~v~~~~g~-~~~~~v~~~~tV~~LK~~i 106 (154)
|.+.....|.+.+.++..++. ...+.++..++...|++.+
T Consensus 17 l~L~p~~LG~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~ 57 (85)
T PF02120_consen 17 LQLDPPELGSVEVKLRLQGGNLSVQFTAENPETKELLRQNL 57 (85)
T ss_dssp E--SSGGG--EEEEEEEETTEEEEEEE--SSHHHHHHHHTH
T ss_pred EEEcccccCcEEEEEEEeCCEEEEEEEECCHHHHHHHHHHH
Confidence 334444457778887776653 2445565555655554443
No 419
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=21.02 E-value=1.4e+02 Score=17.60 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=6.4
Q ss_pred CCCcceEEEECCeec
Q 031706 112 IPPVQQRLIYAGKQL 126 (154)
Q Consensus 112 i~~~~q~l~~~g~~L 126 (154)
.|.-...|..+|+.+
T Consensus 30 ~P~p~v~W~k~g~~l 44 (92)
T cd05747 30 EPAPTVTWMREGQII 44 (92)
T ss_pred cCCCEEEEEECCEEC
Confidence 333334444444444
No 420
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=20.97 E-value=1.7e+02 Score=20.04 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=23.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
++|++...+|....+...-.+||.++-..
T Consensus 44 i~Itfv~~dG~~~~i~g~vGdtlLd~ah~ 72 (159)
T KOG3309|consen 44 IKITFVDPDGEEIKIKGKVGDTLLDAAHE 72 (159)
T ss_pred EEEEEECCCCCEEEeeeecchHHHHHHHH
Confidence 46788888999999999999999886443
No 421
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=20.77 E-value=2.4e+02 Score=17.87 Aligned_cols=35 Identities=6% Similarity=0.189 Sum_probs=26.3
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhC-CCCCceEEEE
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIF 45 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~-i~~~~q~L~~ 45 (154)
....+.+.++++..++++++.+... ++.+++.+++
T Consensus 29 ~i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivl 64 (116)
T TIGR00824 29 NVGAVPFVPGENAETLQEKYNAALADLDTEEEVLFL 64 (116)
T ss_pred CeEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 4577889999999999999977654 5555666654
No 422
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=20.67 E-value=1.8e+02 Score=17.42 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=20.0
Q ss_pred CcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 95 PTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 95 ~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
++-+-.+++++|++.++++++...+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~ 36 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVF 36 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEE
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEe
Confidence 45678999999999999988776553
No 423
>COG1901 Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=1.9e+02 Score=20.49 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=32.0
Q ss_pred ccccccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhh
Q 031706 56 LADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE 108 (154)
Q Consensus 56 L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~ 108 (154)
+-+.++..+-++++++.-.......++........+.-++..+...+++.+.+
T Consensus 41 f~sh~~R~dV~v~lvL~G~p~ppktI~~~g~~~~~~~pdErs~a~~i~kAL~~ 93 (197)
T COG1901 41 FLSHGIRRDVVVYLVLLGPPDPPKTIRVEGSELRYLNPDERSLAILIKKALDA 93 (197)
T ss_pred HHhccccCceEEEEEEecCCCCCEEEEEEcccccccCcchHHHHHHHHHHHHh
Confidence 34567788888888886443333333333322223445556678888888877
No 424
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=20.63 E-value=2e+02 Score=16.96 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=41.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc-ceEeecCccccccccccccceee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-g~~L~d~~~L~~~~i~~~~~i~l 69 (154)
..+.|+.++....+-...++++.+|+..=-++.+ |.-+....+..+--++.|+.+.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 4578999998888888888889999877777654 66677777877777788887754
No 425
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.11 E-value=2.3e+02 Score=17.47 Aligned_cols=67 Identities=22% Similarity=0.361 Sum_probs=38.4
Q ss_pred CceEEEeeCC--cchHHHHHHHHhhhcCCCCcceEEEECCee------c---CCCCcccc--cCCCCCCEEEEEEeecCC
Q 031706 86 GKEIEIDIEP--TDTIERIKERVEEKEGIPPVQQRLIYAGKQ------L---ADDKTARD--YNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 86 g~~~~~~v~~--~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~------L---~d~~~L~~--~~i~~~~~i~l~~~~~gg 152 (154)
.+.+.+.++. ..+|+.+-..+..-..-|...-.+..+|.. | .|..-+.. |.+++|+.|.++-.+-||
T Consensus 17 qR~~el~~~~~e~~~vg~liD~~~~~i~~p~~~sifie~g~lrpGiI~LINd~DWeLleke~y~ledgDiIvfistlHGg 96 (96)
T COG5131 17 QREIELTREEVEGSSVGTLIDALRYFIYAPTRDSIFIEHGELRPGIICLINDMDWELLEKERYPLEDGDIIVFISTLHGG 96 (96)
T ss_pred ceeeEEEEcccCCcchhhHHHHHHHHHhCCccceeeecCCCCcccEEEEEcCccHhhhhcccccCCCCCEEEEEecccCC
Confidence 4444555443 457777766665522223333333344431 1 13444554 899999999988888776
No 426
>PF07984 DUF1693: Domain of unknown function (DUF1693) ; InterPro: IPR012937 This domain occurs in many hypothetical proteins. It also occurs in some prion-like proteins.
Probab=20.03 E-value=1e+02 Score=23.76 Aligned_cols=39 Identities=33% Similarity=0.512 Sum_probs=31.8
Q ss_pred EEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE
Q 031706 4 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (154)
Q Consensus 4 ~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 44 (154)
-|.. .|...++++.+.+-|..++.++++. ||++.+.+|.
T Consensus 18 ~Ihg-rgnfPTl~v~l~~LI~~Vr~~L~~~-GI~VkdVRLN 56 (320)
T PF07984_consen 18 PIHG-RGNFPTLEVRLKDLIQVVRDRLEER-GIPVKDVRLN 56 (320)
T ss_pred eecc-CCCceeEEeeHHHHHHHHHHHHHHc-CCCccceEEe
Confidence 3443 4577889999999999999999887 9999987765
Done!