Query 031706
Match_columns 154
No_of_seqs 266 out of 1810
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 06:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 2.3E-44 7.9E-49 245.3 18.9 153 1-153 3-158 (159)
2 3u30_A Ubiquitin, linear DI-ub 100.0 9.1E-44 3.1E-48 245.1 17.4 152 1-152 21-172 (172)
3 3b08_A Polyubiquitin-C, ubiqui 100.0 4E-42 1.4E-46 232.4 19.3 152 1-152 1-152 (152)
4 2kdi_A Ubiquitin, vacuolar pro 99.9 1.8E-24 6.3E-29 139.0 2.6 101 1-101 10-113 (114)
5 4fbj_B NEDD8; effector-HOST ta 99.9 6E-23 2.1E-27 126.3 9.2 77 77-153 1-77 (88)
6 3phx_B Ubiquitin-like protein 99.9 1.2E-22 4.2E-27 122.4 10.3 77 75-151 3-79 (79)
7 3phx_B Ubiquitin-like protein 99.9 1.5E-22 5.1E-27 122.1 8.9 75 1-75 5-79 (79)
8 1sif_A Ubiquitin; hydrophobic 99.9 1.6E-22 5.4E-27 124.4 9.1 80 75-154 8-87 (88)
9 4fbj_B NEDD8; effector-HOST ta 99.9 1.4E-22 4.9E-27 124.5 8.8 78 1-78 1-78 (88)
10 1yx5_B Ubiquitin; proteasome, 99.9 3.1E-22 1E-26 125.5 9.3 90 1-90 1-90 (98)
11 3plu_A Ubiquitin-like modifier 99.9 2.6E-22 9E-27 122.5 8.7 71 1-71 22-92 (93)
12 3dbh_I NEDD8; cell cycle, acti 99.9 2.9E-22 1E-26 123.1 8.9 79 74-152 10-88 (88)
13 1ndd_A NEDD8, protein (ubiquit 99.9 5.3E-22 1.8E-26 118.6 9.7 76 77-152 1-76 (76)
14 3n3k_B Ubiquitin; hydrolase, p 99.9 3.9E-22 1.3E-26 121.8 8.6 78 76-153 3-80 (85)
15 1wh3_A 59 kDa 2'-5'-oligoadeny 99.9 6.5E-22 2.2E-26 121.3 9.7 81 74-154 5-85 (87)
16 4eew_A Large proline-rich prot 99.9 5.8E-22 2E-26 121.8 9.1 88 60-148 1-88 (88)
17 3mtn_B UBA80, ubcep1, ubiquiti 99.9 8.7E-22 3E-26 120.2 9.7 78 76-153 3-80 (85)
18 4hcn_B Polyubiquitin, ubiquiti 99.9 6.2E-22 2.1E-26 124.0 9.3 78 75-152 21-98 (98)
19 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 9.9E-22 3.4E-26 122.7 9.9 78 76-153 1-78 (96)
20 3a9j_A Ubiquitin; protein comp 99.9 1.4E-21 4.7E-26 116.8 10.0 76 77-152 1-76 (76)
21 1ndd_A NEDD8, protein (ubiquit 99.9 9.2E-22 3.2E-26 117.5 9.0 76 1-76 1-76 (76)
22 2kk8_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 120.9 8.0 73 1-73 11-84 (84)
23 2ojr_A Ubiquitin; lanthide-bin 99.9 2.1E-21 7.1E-26 124.2 10.4 93 60-152 11-111 (111)
24 3a9j_A Ubiquitin; protein comp 99.9 1.7E-21 5.8E-26 116.3 9.3 76 1-76 1-76 (76)
25 2hj8_A Interferon-induced 17 k 99.9 6.5E-22 2.2E-26 121.6 7.5 79 75-153 3-81 (88)
26 2uyz_B Small ubiquitin-related 99.9 8.3E-22 2.8E-26 118.8 7.8 77 76-152 3-79 (79)
27 4hcn_B Polyubiquitin, ubiquiti 99.9 1.5E-21 5.1E-26 122.3 9.0 76 1-76 23-98 (98)
28 3dbh_I NEDD8; cell cycle, acti 99.9 1.1E-21 3.7E-26 120.5 8.0 76 1-76 13-88 (88)
29 1sif_A Ubiquitin; hydrophobic 99.9 1.9E-21 6.6E-26 119.5 8.7 76 1-76 10-85 (88)
30 3plu_A Ubiquitin-like modifier 99.9 3.1E-21 1.1E-25 117.8 9.5 77 71-147 16-92 (93)
31 3k9o_B Ubiquitin, UBB+1; E2-25 99.9 2.5E-21 8.5E-26 120.8 9.3 79 1-79 2-80 (96)
32 2kan_A Uncharacterized protein 99.9 2.4E-21 8.4E-26 120.3 9.1 79 74-153 13-92 (94)
33 3vdz_A Ubiquitin-40S ribosomal 99.9 3.6E-21 1.2E-25 123.1 10.1 78 75-152 34-111 (111)
34 3n3k_B Ubiquitin; hydrolase, p 99.9 1.7E-21 5.7E-26 118.9 8.1 76 1-76 4-79 (85)
35 1wy8_A NP95-like ring finger p 99.9 5.5E-21 1.9E-25 117.7 10.0 79 75-153 6-86 (89)
36 2uyz_B Small ubiquitin-related 99.9 1.5E-21 5.1E-26 117.6 7.3 76 1-76 4-79 (79)
37 1wyw_B Ubiquitin-like protein 99.9 2.1E-21 7.1E-26 121.4 8.2 79 74-152 19-97 (97)
38 3v6c_B Ubiquitin; structural g 99.9 2.8E-21 9.6E-26 119.5 8.4 73 1-73 18-90 (91)
39 2l7r_A Ubiquitin-like protein 99.9 2.4E-21 8.4E-26 120.2 8.1 77 74-152 17-93 (93)
40 3mtn_B UBA80, ubcep1, ubiquiti 99.9 3.6E-21 1.2E-25 117.4 8.6 76 1-76 4-79 (85)
41 2hj8_A Interferon-induced 17 k 99.8 2E-21 6.9E-26 119.4 7.0 76 1-76 5-80 (88)
42 4dwf_A HLA-B-associated transc 99.8 5.3E-21 1.8E-25 118.0 8.9 75 1-76 6-80 (90)
43 1uh6_A Ubiquitin-like 5; beta- 99.8 1.8E-21 6.2E-26 121.0 6.8 71 1-71 29-99 (100)
44 2lxa_A Ubiquitin-like protein 99.8 1.9E-21 6.3E-26 118.8 6.7 74 1-74 2-79 (87)
45 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 4.5E-21 1.6E-25 117.5 8.3 76 1-76 8-83 (87)
46 2faz_A Ubiquitin-like containi 99.8 5.5E-21 1.9E-25 114.9 8.3 73 1-73 3-77 (78)
47 3v6c_B Ubiquitin; structural g 99.8 1.1E-20 3.8E-25 116.8 9.6 77 74-150 15-91 (91)
48 4eew_A Large proline-rich prot 99.8 8.7E-21 3E-25 116.5 8.8 71 1-72 18-88 (88)
49 3vdz_A Ubiquitin-40S ribosomal 99.8 8.5E-21 2.9E-25 121.4 8.8 76 1-76 36-111 (111)
50 2kan_A Uncharacterized protein 99.8 8.4E-21 2.9E-25 117.9 8.5 75 1-76 16-91 (94)
51 1wy8_A NP95-like ring finger p 99.8 9.5E-21 3.2E-25 116.6 8.6 77 1-77 8-86 (89)
52 1yx5_B Ubiquitin; proteasome, 99.8 1.9E-20 6.4E-25 117.3 10.1 77 77-153 1-77 (98)
53 2dzi_A Ubiquitin-like protein 99.8 1.5E-20 5.1E-25 113.7 9.2 73 1-73 8-80 (81)
54 1we6_A Splicing factor, putati 99.8 9.2E-21 3.1E-25 121.2 8.5 81 73-153 24-108 (111)
55 1wyw_B Ubiquitin-like protein 99.8 6.2E-21 2.1E-25 119.2 7.3 76 1-76 22-97 (97)
56 2faz_A Ubiquitin-like containi 99.8 2.9E-20 9.8E-25 111.7 9.8 76 75-150 1-78 (78)
57 1uel_A HHR23B, UV excision rep 99.8 2.6E-20 8.8E-25 116.0 9.8 74 1-74 1-77 (95)
58 4dwf_A HLA-B-associated transc 99.8 2.4E-20 8.2E-25 115.0 9.4 77 75-152 4-80 (90)
59 3l0w_B Monoubiquitinated proli 99.8 2.3E-20 8E-25 127.5 10.0 77 77-153 1-77 (169)
60 3l0w_B Monoubiquitinated proli 99.8 2.5E-20 8.5E-25 127.4 10.1 82 1-82 1-82 (169)
61 1wgd_A Homocysteine-responsive 99.8 1.6E-20 5.3E-25 116.6 8.3 79 75-153 6-90 (93)
62 2kdi_A Ubiquitin, vacuolar pro 99.8 4.1E-20 1.4E-24 118.6 10.3 80 74-153 7-86 (114)
63 3q3f_A Ribonuclease/ubiquitin 99.8 9.4E-21 3.2E-25 130.9 7.6 82 1-82 106-187 (189)
64 2l7r_A Ubiquitin-like protein 99.8 1.3E-20 4.6E-25 116.8 7.6 74 1-76 20-93 (93)
65 2wyq_A HHR23A, UV excision rep 99.8 3.1E-20 1.1E-24 113.3 8.9 74 1-74 6-82 (85)
66 4a20_A Ubiquitin-like protein 99.8 2.1E-20 7.2E-25 116.5 8.1 73 1-73 20-96 (98)
67 3m62_B UV excision repair prot 99.8 1.1E-20 3.7E-25 119.9 6.9 74 1-74 2-75 (106)
68 3q3f_A Ribonuclease/ubiquitin 99.8 3.9E-20 1.3E-24 127.9 9.8 80 74-153 103-182 (189)
69 3b1l_X E3 ubiquitin-protein li 99.7 4.7E-22 1.6E-26 119.0 0.0 75 1-75 1-75 (76)
70 2bwf_A Ubiquitin-like protein 99.8 4.5E-20 1.5E-24 110.5 8.6 72 1-73 5-76 (77)
71 2kk8_A Uncharacterized protein 99.8 5E-20 1.7E-24 112.1 8.5 74 75-148 9-83 (84)
72 1wgd_A Homocysteine-responsive 99.8 3.5E-20 1.2E-24 115.0 7.6 76 1-76 8-89 (93)
73 1wju_A NEDD8 ultimate buster-1 99.8 4.4E-20 1.5E-24 114.8 7.8 74 78-152 17-94 (100)
74 2ojr_A Ubiquitin; lanthide-bin 99.8 8.8E-20 3E-24 116.7 9.4 76 1-76 36-111 (111)
75 1we7_A SF3A1 protein; structur 99.8 8.6E-20 2.9E-24 117.4 9.1 69 85-153 44-112 (115)
76 2dzi_A Ubiquitin-like protein 99.8 1.3E-19 4.5E-24 109.5 8.7 76 75-150 6-81 (81)
77 4ajy_B Transcription elongatio 99.8 1.2E-19 4E-24 115.5 8.3 75 1-75 1-83 (118)
78 1yqb_A Ubiquilin 3; structural 99.8 8.3E-20 2.8E-24 114.6 7.5 75 1-76 23-97 (100)
79 3b1l_X E3 ubiquitin-protein li 99.7 2E-21 6.7E-26 116.2 0.0 75 77-151 1-75 (76)
80 3rt3_B Ubiquitin-like protein 99.8 1.2E-19 4.2E-24 123.0 8.8 76 1-76 82-157 (159)
81 1wx8_A Riken cDNA 4931431F19; 99.8 6.3E-20 2.2E-24 114.4 6.7 75 1-76 18-92 (96)
82 1uh6_A Ubiquitin-like 5; beta- 99.8 1.1E-19 3.9E-24 112.9 7.6 71 77-147 29-99 (100)
83 1v2y_A 3300001G02RIK protein; 99.8 3.2E-20 1.1E-24 116.8 5.1 76 1-76 8-99 (105)
84 1yqb_A Ubiquilin 3; structural 99.8 2E-19 6.8E-24 112.9 8.7 79 74-153 20-98 (100)
85 1ttn_A DC-UBP, dendritic cell- 99.8 1E-19 3.6E-24 115.4 7.4 74 1-74 24-97 (106)
86 2fnj_B Transcription elongatio 99.8 1.1E-19 3.9E-24 116.0 7.6 73 1-73 1-81 (118)
87 1uel_A HHR23B, UV excision rep 99.8 4.5E-19 1.6E-23 110.3 10.2 76 77-152 1-79 (95)
88 2klc_A Ubiquilin-1; ubiquitin- 99.8 2.5E-19 8.7E-24 112.6 9.1 74 1-75 26-99 (101)
89 2wyq_A HHR23A, UV excision rep 99.8 5.9E-19 2E-23 107.6 10.3 77 74-150 3-82 (85)
90 3u5e_m 60S ribosomal protein L 99.8 3.4E-21 1.2E-25 126.2 0.3 77 77-153 1-77 (128)
91 1wju_A NEDD8 ultimate buster-1 99.8 1.5E-19 5E-24 112.4 7.5 72 2-74 17-92 (100)
92 1wx8_A Riken cDNA 4931431F19; 99.8 7.1E-20 2.4E-24 114.2 6.1 78 75-153 16-93 (96)
93 2fnj_B Transcription elongatio 99.8 1.6E-19 5.5E-24 115.3 7.6 75 77-152 1-83 (118)
94 2lxa_A Ubiquitin-like protein 99.8 1.2E-19 4.1E-24 110.8 6.6 73 77-149 2-78 (87)
95 4a20_A Ubiquitin-like protein 99.8 5.1E-19 1.8E-23 110.2 9.5 77 74-150 17-97 (98)
96 1j8c_A Ubiquitin-like protein 99.8 4.5E-19 1.5E-23 115.4 9.4 78 75-153 31-108 (125)
97 1we6_A Splicing factor, putati 99.8 1.3E-19 4.4E-24 115.9 6.7 76 1-76 28-107 (111)
98 1j8c_A Ubiquitin-like protein 99.8 4.3E-19 1.5E-23 115.5 9.3 75 1-76 33-107 (125)
99 3m62_B UV excision repair prot 99.8 3.3E-19 1.1E-23 113.1 8.5 74 77-150 2-75 (106)
100 1se9_A Ubiquitin family; ubiqu 99.8 6.4E-19 2.2E-23 113.7 9.9 80 74-153 14-107 (126)
101 4ajy_B Transcription elongatio 99.8 3.2E-19 1.1E-23 113.4 8.3 75 77-151 1-83 (118)
102 3u5e_m 60S ribosomal protein L 99.8 5.4E-21 1.8E-25 125.2 0.0 76 1-76 1-76 (128)
103 3u5c_f 40S ribosomal protein S 99.8 6.1E-21 2.1E-25 127.8 0.0 77 77-153 1-77 (152)
104 1v5o_A 1700011N24RIK protein; 99.8 3E-19 1E-23 112.5 7.7 76 1-76 8-88 (102)
105 1wx7_A Ubiquilin 3; ubiquitin- 99.8 3.9E-19 1.3E-23 112.8 8.0 75 1-76 18-92 (106)
106 1ttn_A DC-UBP, dendritic cell- 99.8 9.1E-19 3.1E-23 111.0 9.6 79 74-152 21-99 (106)
107 3m63_B Ubiquitin domain-contai 99.8 1.3E-19 4.5E-24 113.9 5.2 93 54-149 8-100 (101)
108 2bwf_A Ubiquitin-like protein 99.8 1.7E-18 5.9E-23 103.5 9.8 71 77-148 5-75 (77)
109 4dbg_A Ranbp-type and C3HC4-ty 99.8 9.9E-19 3.4E-23 109.5 8.9 73 1-73 25-100 (105)
110 1wx7_A Ubiquilin 3; ubiquitin- 99.8 7.6E-19 2.6E-23 111.4 8.4 78 75-153 16-93 (106)
111 1wgh_A Ubiquitin-like 3, HCG-1 99.8 1.1E-18 3.6E-23 111.7 9.0 74 1-74 17-100 (116)
112 2klc_A Ubiquilin-1; ubiquitin- 99.8 2.1E-18 7.1E-23 108.4 10.2 80 72-152 21-100 (101)
113 1v2y_A 3300001G02RIK protein; 99.8 2.2E-19 7.4E-24 113.0 5.5 77 76-152 7-99 (105)
114 1v5o_A 1700011N24RIK protein; 99.8 6.9E-19 2.4E-23 110.8 7.8 79 75-153 6-89 (102)
115 3u30_A Ubiquitin, linear DI-ub 99.8 1.8E-18 6E-23 118.7 10.5 79 74-152 18-96 (172)
116 3u5c_f 40S ribosomal protein S 99.8 1.5E-20 5E-25 126.0 0.0 76 1-76 1-76 (152)
117 1se9_A Ubiquitin family; ubiqu 99.8 1.1E-18 3.7E-23 112.7 8.5 76 1-76 17-106 (126)
118 3m63_B Ubiquitin domain-contai 99.8 1.8E-19 6.2E-24 113.2 4.7 71 1-72 29-99 (101)
119 2kdb_A Homocysteine-responsive 99.8 6.9E-19 2.4E-23 109.9 6.9 70 1-70 24-99 (99)
120 2gow_A HCG-1 protein, ubiquiti 99.8 9.7E-19 3.3E-23 113.3 7.7 75 1-75 18-102 (125)
121 1we7_A SF3A1 protein; structur 99.8 1.5E-18 5.1E-23 111.6 8.1 76 1-76 26-111 (115)
122 2daf_A FLJ35834 protein; hypot 99.8 1.6E-18 5.4E-23 109.7 7.7 76 2-77 17-93 (118)
123 2kd0_A LRR repeats and ubiquit 99.8 2.6E-18 8.7E-23 104.8 8.4 70 3-72 14-83 (85)
124 3b08_A Polyubiquitin-C, ubiqui 99.8 3.4E-18 1.1E-22 114.8 9.0 76 1-76 77-152 (152)
125 1v5t_A 8430435I17RIK protein; 99.8 1.3E-18 4.4E-23 107.2 6.4 73 1-74 8-84 (90)
126 1wgh_A Ubiquitin-like 3, HCG-1 99.8 7.5E-18 2.6E-22 107.7 10.1 80 73-152 13-102 (116)
127 1wgg_A Ubiquitin carboxyl-term 99.8 1.6E-18 5.4E-23 107.9 6.6 72 1-74 8-80 (96)
128 2gow_A HCG-1 protein, ubiquiti 99.8 5E-18 1.7E-22 110.0 8.7 77 76-152 17-103 (125)
129 1wxv_A BAG-family molecular ch 99.7 8.1E-18 2.8E-22 104.0 8.2 73 1-74 8-86 (92)
130 1x1m_A Ubiquitin-like protein 99.7 4.2E-18 1.4E-22 108.1 7.1 74 1-74 13-101 (107)
131 1wia_A Hypothetical ubiquitin- 99.7 6.1E-18 2.1E-22 105.2 7.4 72 1-75 8-80 (95)
132 4dbg_A Ranbp-type and C3HC4-ty 99.7 2.4E-17 8.2E-22 103.2 9.7 72 77-148 25-99 (105)
133 2kd0_A LRR repeats and ubiquit 99.7 3.3E-17 1.1E-21 99.8 8.6 70 79-148 14-83 (85)
134 2kjr_A CG11242; UBL, ubiquitin 99.7 2.3E-17 7.9E-22 102.2 7.8 70 1-70 16-93 (95)
135 2dzm_A FAS-associated factor 1 99.7 1.2E-17 4.1E-22 104.2 6.5 73 1-74 9-83 (100)
136 1v86_A DNA segment, CHR 7, way 99.7 4.7E-18 1.6E-22 105.6 4.4 71 1-73 18-88 (95)
137 2dzj_A Synaptic glycoprotein S 99.7 7.7E-18 2.6E-22 103.1 5.3 69 1-69 11-85 (88)
138 2kdb_A Homocysteine-responsive 99.7 1.6E-17 5.4E-22 103.7 6.7 72 75-146 22-99 (99)
139 4b6w_A Tubulin-specific chaper 99.7 2.2E-17 7.7E-22 100.5 6.3 72 2-73 4-84 (86)
140 1v5t_A 8430435I17RIK protein; 99.7 4.7E-17 1.6E-21 100.2 7.7 73 76-149 7-83 (90)
141 2xzm_9 RPS31E; ribosome, trans 99.7 9.9E-19 3.4E-23 120.2 0.1 72 77-153 1-72 (189)
142 1wia_A Hypothetical ubiquitin- 99.7 8E-17 2.7E-21 100.1 8.5 75 75-152 6-81 (95)
143 1x1m_A Ubiquitin-like protein 99.7 7E-17 2.4E-21 102.4 8.3 76 75-150 11-101 (107)
144 3ai5_A Yeast enhanced green fl 99.7 7.4E-17 2.5E-21 118.8 8.4 73 1-73 234-306 (307)
145 1wgg_A Ubiquitin carboxyl-term 99.7 5.8E-17 2E-21 100.8 6.4 72 76-149 7-79 (96)
146 3ai5_A Yeast enhanced green fl 99.7 2.2E-16 7.7E-21 116.3 10.3 78 73-150 230-307 (307)
147 2xzm_9 RPS31E; ribosome, trans 99.7 2.7E-18 9.1E-23 118.0 0.0 72 1-77 1-72 (189)
148 2daf_A FLJ35834 protein; hypot 99.7 1.8E-16 6.3E-21 100.2 8.3 73 77-149 16-89 (118)
149 2kj6_A Tubulin folding cofacto 99.7 1.2E-16 4.1E-21 99.3 7.3 71 2-72 16-95 (97)
150 4b6w_A Tubulin-specific chaper 99.7 2.2E-16 7.4E-21 96.1 7.7 66 85-150 13-85 (86)
151 2io1_B Small ubiquitin-related 99.7 3.4E-16 1.2E-20 96.8 8.6 78 76-153 7-84 (94)
152 1wxv_A BAG-family molecular ch 99.7 2.9E-16 1E-20 97.0 8.0 74 76-150 7-86 (92)
153 1t0y_A Tubulin folding cofacto 99.7 2.9E-16 1E-20 101.8 8.0 73 1-73 7-87 (122)
154 2dzm_A FAS-associated factor 1 99.7 1.4E-16 4.8E-21 99.4 5.7 75 76-150 8-83 (100)
155 2kjr_A CG11242; UBL, ubiquitin 99.7 5.3E-16 1.8E-20 96.1 8.2 72 76-147 15-94 (95)
156 1wf9_A NPL4 family protein; be 99.7 9.9E-17 3.4E-21 101.7 4.8 72 1-73 8-95 (107)
157 2io1_B Small ubiquitin-related 99.6 5.9E-16 2E-20 95.7 8.1 76 1-76 8-83 (94)
158 1v6e_A Cytoskeleton-associated 99.6 4.2E-16 1.5E-20 96.8 7.2 72 1-72 8-87 (95)
159 1oqy_A HHR23A, UV excision rep 99.6 2.3E-16 7.7E-21 119.2 7.1 75 1-75 8-86 (368)
160 1v86_A DNA segment, CHR 7, way 99.6 1.8E-16 6.3E-21 98.4 5.2 72 76-149 17-88 (95)
161 2dzj_A Synaptic glycoprotein S 99.6 4.1E-16 1.4E-20 95.4 6.5 70 76-145 10-85 (88)
162 1oqy_A HHR23A, UV excision rep 99.6 6.4E-16 2.2E-20 116.7 8.3 79 75-153 6-88 (368)
163 2io0_B Small ubiquitin-related 99.6 3E-15 1E-19 91.9 9.1 78 76-153 5-82 (91)
164 2kj6_A Tubulin folding cofacto 99.6 1.4E-15 4.7E-20 94.5 7.6 72 77-148 15-95 (97)
165 2io0_B Small ubiquitin-related 99.6 3.9E-15 1.3E-19 91.4 8.6 79 1-79 6-84 (91)
166 2d07_B Ubiquitin-like protein 99.6 7.9E-15 2.7E-19 90.5 8.9 77 76-152 17-93 (93)
167 2kzr_A Ubiquitin thioesterase 99.6 1.4E-15 4.8E-20 92.7 5.1 72 1-73 1-78 (86)
168 1wm3_A Ubiquitin-like protein 99.6 1.1E-14 3.8E-19 85.8 8.1 70 1-70 2-71 (72)
169 1v6e_A Cytoskeleton-associated 99.6 7.1E-15 2.4E-19 91.2 7.6 71 77-147 8-86 (95)
170 2d07_B Ubiquitin-like protein 99.6 1.2E-14 4.3E-19 89.6 8.4 76 1-76 18-93 (93)
171 1wz0_A Ubiquitin-like protein 99.6 1.2E-14 4.1E-19 91.2 7.5 79 75-153 23-101 (104)
172 1wf9_A NPL4 family protein; be 99.6 6.5E-15 2.2E-19 93.3 5.9 71 77-148 8-94 (107)
173 2eke_C Ubiquitin-like protein 99.5 3.1E-14 1.1E-18 89.5 8.3 77 75-152 30-106 (106)
174 1t0y_A Tubulin folding cofacto 99.5 3.1E-14 1E-18 92.2 8.4 72 77-148 7-86 (122)
175 1wz0_A Ubiquitin-like protein 99.5 2E-14 6.9E-19 90.2 7.1 76 1-76 25-100 (104)
176 3shq_A UBLCP1; phosphatase, hy 99.5 8.6E-15 2.9E-19 109.0 5.9 74 1-75 6-82 (320)
177 2k8h_A Small ubiquitin protein 99.5 2.1E-14 7.2E-19 90.9 6.2 78 1-78 27-104 (110)
178 2eke_C Ubiquitin-like protein 99.5 5.9E-14 2E-18 88.2 7.8 75 1-76 32-106 (106)
179 3a4r_A Nfatc2-interacting prot 99.5 7.7E-14 2.6E-18 83.5 7.9 70 1-70 8-78 (79)
180 2k8h_A Small ubiquitin protein 99.5 3E-14 1E-18 90.2 6.4 79 75-153 25-103 (110)
181 2kzr_A Ubiquitin thioesterase 99.5 6.2E-14 2.1E-18 85.4 6.2 71 77-148 1-77 (86)
182 1wm3_A Ubiquitin-like protein 99.5 2.3E-13 7.9E-18 80.1 8.3 70 77-146 2-71 (72)
183 3shq_A UBLCP1; phosphatase, hy 99.5 1.3E-13 4.4E-18 102.7 7.1 72 77-149 6-80 (320)
184 1wjn_A Tubulin-folding protein 99.4 3.7E-13 1.3E-17 83.7 8.0 72 2-73 11-93 (97)
185 3a4r_A Nfatc2-interacting prot 99.4 1.4E-12 4.8E-17 78.0 8.6 72 75-146 6-78 (79)
186 1wjn_A Tubulin-folding protein 99.3 5.2E-12 1.8E-16 78.5 8.1 74 77-150 10-94 (97)
187 3kyd_D Small ubiquitin-related 99.3 1.4E-11 4.7E-16 78.2 8.7 74 1-74 41-114 (115)
188 3kyd_D Small ubiquitin-related 99.2 6.6E-11 2.3E-15 75.0 9.1 76 76-151 40-115 (115)
189 3pge_A SUMO-modified prolifera 99.2 8.6E-11 2.9E-15 81.5 9.0 77 76-153 29-105 (200)
190 3tix_A Ubiquitin-like protein 99.2 7E-11 2.4E-15 80.6 7.1 77 76-153 57-133 (207)
191 3pge_A SUMO-modified prolifera 99.1 1.5E-10 5.2E-15 80.2 7.9 75 1-76 30-104 (200)
192 3tix_A Ubiquitin-like protein 99.1 1.3E-10 4.3E-15 79.4 6.9 76 1-77 58-133 (207)
193 3goe_A DNA repair protein RAD6 99.1 1.1E-09 3.8E-14 63.7 8.5 70 2-71 11-81 (82)
194 2pjh_A Protein NPL4, nuclear p 99.1 6.9E-11 2.4E-15 70.7 2.9 69 1-70 5-78 (80)
195 3v7o_A Minor nucleoprotein VP3 99.0 4E-11 1.4E-15 82.9 0.2 79 74-153 19-97 (227)
196 3v7o_A Minor nucleoprotein VP3 99.0 4.5E-11 1.6E-15 82.6 -0.3 78 1-79 22-99 (227)
197 3ivf_A Talin-1; FERM domain, c 99.0 7E-08 2.4E-12 73.3 17.2 143 2-148 5-167 (371)
198 3goe_A DNA repair protein RAD6 99.0 9.4E-09 3.2E-13 59.8 9.0 70 78-147 11-81 (82)
199 2pjh_A Protein NPL4, nuclear p 98.9 1.6E-09 5.4E-14 64.7 4.1 70 76-146 4-78 (80)
200 2jxx_A Nfatc2-interacting prot 98.8 2.1E-08 7.1E-13 61.8 7.9 70 1-70 26-96 (97)
201 4efo_A Serine/threonine-protei 98.7 1.1E-07 3.9E-12 57.9 8.2 58 3-60 15-75 (94)
202 2jxx_A Nfatc2-interacting prot 98.7 1.4E-07 4.8E-12 58.0 8.1 71 76-146 25-96 (97)
203 3uf8_A Ubiquitin-like protein 98.7 9.3E-08 3.2E-12 67.1 7.9 79 74-153 19-97 (209)
204 3ix6_A TS, tsase, thymidylate 98.6 3.4E-09 1.2E-13 79.4 -0.0 77 1-78 22-98 (360)
205 2al3_A TUG long isoform; TUG U 98.6 2.1E-07 7.2E-12 56.0 7.7 75 74-148 7-81 (90)
206 3uf8_A Ubiquitin-like protein 98.6 1.3E-07 4.5E-12 66.3 7.8 74 2-76 23-96 (209)
207 3ix6_A TS, tsase, thymidylate 98.6 5.3E-09 1.8E-13 78.4 0.0 79 73-152 18-96 (360)
208 2l76_A Nfatc2-interacting prot 98.6 2.7E-07 9.3E-12 56.0 7.2 71 1-72 22-92 (95)
209 2l76_A Nfatc2-interacting prot 98.5 1.1E-06 3.7E-11 53.4 8.6 71 77-148 22-92 (95)
210 2kc2_A Talin-1, F1; FERM, adhe 98.5 3.2E-07 1.1E-11 59.1 6.0 71 2-72 13-122 (128)
211 2al3_A TUG long isoform; TUG U 98.5 7.3E-07 2.5E-11 53.6 6.7 74 1-74 10-83 (90)
212 4efo_A Serine/threonine-protei 98.4 9E-07 3.1E-11 53.9 7.0 69 79-147 15-87 (94)
213 4da1_A Protein phosphatase 1K, 98.4 4.6E-08 1.6E-12 74.7 0.0 79 2-81 32-110 (389)
214 4da1_A Protein phosphatase 1K, 98.3 5.7E-08 1.9E-12 74.2 0.0 76 77-153 31-106 (389)
215 2kc2_A Talin-1, F1; FERM, adhe 98.3 8.9E-07 3.1E-11 57.0 5.1 71 78-148 13-122 (128)
216 2bps_A YUKD protein; ubiquitin 98.2 4.9E-06 1.7E-10 49.3 6.4 68 2-69 6-80 (81)
217 2bps_A YUKD protein; ubiquitin 98.0 1E-05 3.6E-10 47.9 5.0 63 83-145 13-80 (81)
218 3qx1_A FAS-associated factor 1 98.0 4.6E-05 1.6E-09 45.5 7.5 69 77-146 8-81 (84)
219 3qx1_A FAS-associated factor 1 98.0 6.3E-05 2.2E-09 44.9 7.9 68 2-70 9-81 (84)
220 2dzk_A UBX domain-containing p 97.7 0.00032 1.1E-08 44.0 7.9 71 2-72 15-90 (109)
221 2dzk_A UBX domain-containing p 97.7 0.00034 1.2E-08 43.8 8.1 71 77-147 14-89 (109)
222 1wj4_A KIAA0794 protein; UBX d 97.6 0.00024 8.3E-09 45.5 7.2 72 75-147 42-118 (124)
223 1wj4_A KIAA0794 protein; UBX d 97.6 0.00039 1.3E-08 44.6 8.0 69 2-71 45-118 (124)
224 2cr5_A Reproduction 8; UBX dom 97.2 0.0017 5.9E-08 40.5 6.8 69 77-146 24-96 (109)
225 2cr5_A Reproduction 8; UBX dom 97.0 0.0029 1E-07 39.5 6.6 70 2-72 25-98 (109)
226 2ylm_A Ubiquitin carboxyl-term 97.0 0.0051 1.7E-07 48.8 9.3 119 12-130 353-501 (530)
227 1s3s_G P47 protein; AAA ATPase 96.9 0.0039 1.3E-07 40.0 6.6 68 76-143 52-123 (127)
228 2l32_A Small archaeal modifier 96.9 0.0042 1.4E-07 36.0 6.1 66 1-76 1-66 (74)
229 2daj_A KIAA0977 protein, COBL- 96.8 0.0065 2.2E-07 35.8 6.5 69 77-148 11-82 (91)
230 1s3s_G P47 protein; AAA ATPase 96.8 0.0035 1.2E-07 40.3 5.8 66 2-67 54-123 (127)
231 4e71_A Plexin-B2, MM1; transme 96.7 0.011 3.6E-07 36.9 7.5 70 2-71 13-109 (111)
232 1ryj_A Unknown; beta/alpha pro 96.7 0.031 1.1E-06 31.8 9.4 67 76-152 4-70 (70)
233 3ivf_A Talin-1; FERM domain, c 96.6 0.024 8.3E-07 42.7 10.4 67 79-146 6-82 (371)
234 4a3p_A Ubiquitin carboxyl-term 96.6 0.007 2.4E-07 42.4 6.7 64 89-152 142-212 (217)
235 2l32_A Small archaeal modifier 96.5 0.01 3.5E-07 34.3 6.1 66 77-152 1-66 (74)
236 2juo_A GA-binding protein alph 96.5 0.012 4E-07 34.6 6.0 59 91-149 7-65 (89)
237 2r2o_A Plexin-B1; effector dom 96.4 0.018 6.1E-07 37.2 7.4 64 11-74 41-130 (138)
238 3jyu_A Ubiquitin carboxyl-term 96.4 0.019 6.4E-07 40.6 8.1 64 89-152 154-224 (231)
239 2ylm_A Ubiquitin carboxyl-term 96.3 0.032 1.1E-06 44.2 9.9 106 15-120 151-286 (530)
240 1ryj_A Unknown; beta/alpha pro 96.3 0.043 1.5E-06 31.2 7.7 63 1-73 5-67 (70)
241 2r2o_A Plexin-B1; effector dom 96.2 0.031 1E-06 36.1 7.4 64 86-149 40-129 (138)
242 1oey_A P67-PHOX, neutrophil cy 96.2 0.017 5.7E-07 34.2 5.6 45 1-47 6-50 (83)
243 2daj_A KIAA0977 protein, COBL- 96.1 0.011 3.9E-07 34.8 4.5 62 2-63 12-76 (91)
244 4a3p_A Ubiquitin carboxyl-term 96.0 0.025 8.4E-07 39.6 6.9 62 13-74 142-210 (217)
245 3jyu_A Ubiquitin carboxyl-term 95.9 0.038 1.3E-06 39.0 7.6 62 13-74 154-222 (231)
246 3h6n_A Plexin-D1; structural g 95.7 0.094 3.2E-06 33.4 7.9 65 9-73 15-105 (127)
247 4e71_A Plexin-B2, MM1; transme 95.7 0.078 2.7E-06 33.0 7.4 63 86-148 23-110 (111)
248 3kuz_A Plexin-C1; structural g 95.6 0.17 5.9E-06 32.0 8.8 60 11-70 39-124 (126)
249 1oey_A P67-PHOX, neutrophil cy 95.5 0.045 1.6E-06 32.3 5.5 39 86-124 13-51 (83)
250 3h6n_A Plexin-D1; structural g 95.4 0.26 8.8E-06 31.3 9.1 64 85-148 15-104 (127)
251 3rpf_C Molybdopterin convertin 95.4 0.099 3.4E-06 29.9 6.7 70 1-75 1-73 (74)
252 1vjk_A Molybdopterin convertin 95.3 0.23 8E-06 29.9 8.8 73 75-152 8-98 (98)
253 2juo_A GA-binding protein alph 95.3 0.086 2.9E-06 30.9 6.2 60 13-72 5-64 (89)
254 4e74_A Plexin-A4; RBD, structu 95.3 0.09 3.1E-06 33.0 6.7 63 11-73 27-115 (117)
255 1tyg_B YJBS; alpha beta barrel 95.2 0.11 3.7E-06 30.9 6.7 61 85-152 26-87 (87)
256 2kvr_A Ubiquitin carboxyl-term 94.9 0.036 1.2E-06 35.6 4.3 34 13-46 58-91 (130)
257 1vjk_A Molybdopterin convertin 94.9 0.27 9.1E-06 29.7 8.0 68 1-73 10-95 (98)
258 3rpf_C Molybdopterin convertin 94.6 0.22 7.7E-06 28.3 6.8 57 91-152 16-74 (74)
259 3kuz_A Plexin-C1; structural g 94.3 0.6 2E-05 29.6 9.1 61 87-147 39-125 (126)
260 1ef1_A Moesin; membrane, FERM 94.2 0.42 1.4E-05 34.6 9.1 72 77-149 2-79 (294)
261 2cu3_A Unknown function protei 94.0 0.25 8.6E-06 27.3 6.0 60 85-152 5-64 (64)
262 3po0_A Small archaeal modifier 93.7 0.49 1.7E-05 27.8 7.3 61 87-152 18-89 (89)
263 2kl0_A Putative thiamin biosyn 93.6 0.17 5.7E-06 29.0 4.8 65 1-76 1-65 (73)
264 1f0z_A THis protein; ubiquitin 93.6 0.16 5.6E-06 28.3 4.7 61 85-152 6-66 (66)
265 4e74_A Plexin-A4; RBD, structu 93.5 0.41 1.4E-05 30.0 6.8 63 86-148 26-114 (117)
266 1h4r_A Merlin; FERM, neurofibr 93.5 0.66 2.2E-05 33.9 9.2 74 75-149 21-99 (314)
267 2kvr_A Ubiquitin carboxyl-term 93.3 0.091 3.1E-06 33.7 3.7 32 89-120 58-89 (130)
268 2kl0_A Putative thiamin biosyn 93.1 0.19 6.6E-06 28.7 4.6 60 85-152 6-65 (73)
269 2q5w_D Molybdopterin convertin 93.1 0.24 8.3E-06 28.2 5.1 59 88-152 17-77 (77)
270 1fm0_D Molybdopterin convertin 93.1 0.37 1.3E-05 27.7 6.0 59 88-152 18-81 (81)
271 1f0z_A THis protein; ubiquitin 92.9 0.27 9.3E-06 27.3 5.0 59 9-74 6-64 (66)
272 2k5p_A THis protein, thiamine- 92.8 0.35 1.2E-05 28.0 5.5 66 1-76 1-69 (78)
273 1ef1_A Moesin; membrane, FERM 92.4 1 3.6E-05 32.4 8.8 70 1-71 2-77 (294)
274 1h4r_A Merlin; FERM, neurofibr 92.3 1.1 3.7E-05 32.7 8.8 69 2-71 24-97 (314)
275 2k5p_A THis protein, thiamine- 92.2 0.2 6.9E-06 29.0 3.9 62 85-153 6-70 (78)
276 3po0_A Small archaeal modifier 92.2 0.81 2.8E-05 26.8 6.7 60 11-75 18-88 (89)
277 1vd2_A Protein kinase C, IOTA 92.1 1 3.5E-05 26.8 6.9 40 9-48 14-54 (89)
278 2i1j_A Moesin; FERM, coiled-co 91.9 0.91 3.1E-05 36.3 8.6 74 76-150 4-83 (575)
279 3hm6_X Plexin-B1; structural g 91.9 0.9 3.1E-05 36.5 8.2 64 11-74 274-363 (644)
280 1vd2_A Protein kinase C, IOTA 91.7 1 3.5E-05 26.8 6.6 41 85-125 14-55 (89)
281 3dwg_C 9.5 kDa culture filtrat 91.6 1.1 3.8E-05 26.4 6.9 73 1-75 1-92 (93)
282 3ig3_A Plxna3 protein; plexin 91.6 1.2 4.2E-05 35.7 8.7 73 2-74 235-336 (627)
283 1tyg_B YJBS; alpha beta barrel 91.4 0.72 2.5E-05 27.3 5.8 59 9-74 26-85 (87)
284 3qij_A Protein 4.1; cytoskelet 91.2 0.97 3.3E-05 32.8 7.5 60 1-60 18-83 (296)
285 2i1j_A Moesin; FERM, coiled-co 90.8 1.6 5.5E-05 34.9 8.9 71 1-72 5-81 (575)
286 2cu3_A Unknown function protei 90.5 0.88 3E-05 25.0 5.3 59 8-74 4-62 (64)
287 1rws_A Hypothetical protein PF 90.0 0.1 3.5E-06 30.1 1.1 53 91-152 25-77 (77)
288 2kmm_A Guanosine-3',5'-BIS(dip 89.8 1.3 4.4E-05 24.7 5.8 62 1-71 1-62 (73)
289 2g1e_A Hypothetical protein TA 89.7 1.7 5.8E-05 25.3 6.5 61 91-152 19-90 (90)
290 4eut_A Serine/threonine-protei 89.7 1.7 5.7E-05 32.5 7.9 50 11-60 322-373 (396)
291 3dwg_C 9.5 kDa culture filtrat 89.7 2 6.8E-05 25.3 7.5 61 90-152 20-93 (93)
292 1rws_A Hypothetical protein PF 89.5 0.22 7.5E-06 28.7 2.3 52 14-74 24-75 (77)
293 2q5w_D Molybdopterin convertin 89.3 0.76 2.6E-05 26.1 4.5 58 11-74 16-75 (77)
294 1wgr_A Growth factor receptor- 89.1 1.1 3.8E-05 27.2 5.3 70 76-145 9-89 (100)
295 1fm0_D Molybdopterin convertin 89.1 1.1 3.6E-05 25.7 5.1 58 11-74 17-79 (81)
296 1wgk_A Riken cDNA 2900073H19 p 88.9 1.2 4E-05 27.8 5.5 74 1-76 12-108 (114)
297 3qij_A Protein 4.1; cytoskelet 88.9 1.6 5.5E-05 31.7 7.0 72 75-146 16-93 (296)
298 2kmc_A Fermitin family homolog 88.4 2.8 9.5E-05 25.3 7.8 70 77-146 20-97 (102)
299 1wgy_A RAP guanine nucleotide 88.4 2.9 0.0001 25.5 7.8 68 81-148 14-86 (104)
300 1wgr_A Growth factor receptor- 87.9 1.6 5.3E-05 26.6 5.4 68 3-70 12-90 (100)
301 3hm6_X Plexin-B1; structural g 87.5 4.2 0.00014 32.8 8.9 62 87-148 274-361 (644)
302 1wgy_A RAP guanine nucleotide 87.3 2.6 9E-05 25.7 6.1 69 5-73 14-87 (104)
303 3ig3_A Plxna3 protein; plexin 87.2 4.9 0.00017 32.3 9.1 64 86-149 246-335 (627)
304 1q1o_A Cell division control p 86.6 1.2 4.1E-05 27.0 4.3 28 10-37 22-49 (98)
305 2k9x_A Tburm1, uncharacterized 86.5 0.28 9.7E-06 30.4 1.5 75 1-77 5-103 (110)
306 3qa8_A MGC80376 protein; kinas 85.4 0.79 2.7E-05 37.4 4.0 51 9-59 320-371 (676)
307 1ip9_A BEM1 protein; ubiquitin 84.4 4.5 0.00015 23.7 6.4 34 9-44 20-53 (85)
308 4eut_A Serine/threonine-protei 83.9 3.4 0.00012 30.8 6.8 53 85-137 320-374 (396)
309 1wgk_A Riken cDNA 2900073H19 p 83.5 6 0.0002 24.5 8.4 62 88-152 31-108 (114)
310 2inc_C TOUB protein; DIIRON, 4 83.4 4.9 0.00017 23.4 7.5 59 90-148 16-82 (83)
311 2g1e_A Hypothetical protein TA 83.3 4.8 0.00016 23.3 6.0 59 14-73 18-87 (90)
312 3u52_E Phenol hydroxylase comp 83.0 6.5 0.00022 24.5 6.7 59 12-70 39-107 (119)
313 3onh_A Ubiquitin-activating en 81.6 6.5 0.00022 24.9 6.2 58 14-72 9-79 (127)
314 4gmv_A RAS-associated and plec 81.2 5.3 0.00018 28.9 6.5 55 3-57 34-95 (281)
315 1y8x_B Ubiquitin-activating en 81.0 2.3 8E-05 25.7 3.9 59 88-146 6-82 (98)
316 3u52_E Phenol hydroxylase comp 81.0 7.9 0.00027 24.1 6.5 60 87-146 38-107 (119)
317 1y8x_B Ubiquitin-activating en 80.7 7.2 0.00024 23.5 6.7 60 12-71 6-83 (98)
318 2hj1_A Hypothetical protein; s 79.4 4.7 0.00016 24.3 4.9 57 11-72 26-85 (97)
319 2l52_A Methanosarcina acetivor 79.4 7.8 0.00027 23.1 7.1 70 1-74 4-97 (99)
320 2v1y_A Phosphatidylinositol-4, 78.9 6.1 0.00021 24.3 5.3 32 3-34 22-53 (108)
321 3qa8_A MGC80376 protein; kinas 78.6 2.9 0.0001 34.1 4.9 51 85-135 320-371 (676)
322 1j0g_A Hypothetical protein 18 77.5 8.2 0.00028 22.3 6.2 65 89-153 26-91 (92)
323 3ge3_C Toluene-4-monooxygenase 77.2 8.5 0.00029 22.4 6.1 58 90-147 18-82 (84)
324 2kmc_A Fermitin family homolog 77.1 9.7 0.00033 23.0 8.5 71 2-72 21-99 (102)
325 2lgx_A Fermitin family homolog 77.0 2.5 8.6E-05 25.9 3.1 67 78-145 28-99 (112)
326 3onh_A Ubiquitin-activating en 76.2 7.6 0.00026 24.6 5.3 51 96-146 19-77 (127)
327 3r8s_T 50S ribosomal protein L 75.9 7.4 0.00025 23.2 5.0 39 10-48 27-66 (93)
328 2dhz_A RAP guanine nucleotide 75.0 8.5 0.00029 24.1 5.3 68 81-148 14-92 (120)
329 3au4_A Myosin-X; protein-prote 75.0 5.9 0.0002 31.3 5.7 45 1-45 217-263 (555)
330 3hk0_A Growth factor receptor- 74.8 7.3 0.00025 27.7 5.6 55 3-57 11-72 (256)
331 2hj1_A Hypothetical protein; s 74.0 8.5 0.00029 23.1 5.0 58 87-149 26-86 (97)
332 3hvz_A Uncharacterized protein 73.4 11 0.00036 21.6 5.5 61 2-71 7-67 (78)
333 1vq8_S 50S ribosomal protein L 72.5 6.5 0.00022 23.0 4.1 33 10-42 22-54 (85)
334 2dhz_A RAP guanine nucleotide 72.0 8.3 0.00028 24.2 4.7 66 7-72 16-92 (120)
335 2zjr_Q 50S ribosomal protein L 70.8 8.1 0.00028 23.1 4.3 36 13-48 25-61 (95)
336 2l52_A Methanosarcina acetivor 70.1 10 0.00036 22.5 4.8 56 96-152 27-99 (99)
337 3hk0_A Growth factor receptor- 69.8 9.9 0.00034 27.1 5.4 36 78-113 10-45 (256)
338 3tca_A Amyloid beta A4 precurs 69.7 16 0.00056 25.7 6.7 39 3-41 37-75 (291)
339 1pqs_A Cell division control p 69.5 5.4 0.00018 22.9 3.2 36 12-47 3-43 (77)
340 2eel_A Cell death activator CI 69.4 9.9 0.00034 22.6 4.4 49 97-148 28-78 (91)
341 3pvl_A Myosin VIIA isoform 1; 68.4 9.2 0.00031 31.1 5.5 45 1-45 264-309 (655)
342 3j21_T 50S ribosomal protein L 68.4 9.4 0.00032 22.4 4.2 33 10-42 23-55 (86)
343 2qjl_A URM1, ubiquitin-related 66.8 17 0.00059 21.5 6.9 24 11-34 20-45 (99)
344 1v8c_A MOAD related protein; r 66.6 19 0.00063 23.8 5.9 60 91-152 18-87 (168)
345 1q1o_A Cell division control p 66.0 8.4 0.00029 23.2 3.7 39 86-124 22-65 (98)
346 3au4_A Myosin-X; protein-prote 65.9 10 0.00036 29.9 5.3 46 76-121 216-263 (555)
347 2qjl_A URM1, ubiquitin-related 65.8 18 0.00062 21.4 7.7 65 87-152 20-99 (99)
348 3tve_T 50S ribosomal protein L 65.7 9.8 0.00033 22.6 3.9 39 11-49 22-61 (92)
349 4gmv_A RAS-associated and plec 63.2 14 0.00048 26.7 5.1 36 78-113 33-68 (281)
350 3pvl_A Myosin VIIA isoform 1; 62.7 21 0.00073 29.0 6.6 47 75-121 262-309 (655)
351 2zjd_A Microtubule-associated 62.0 22 0.00076 22.5 5.3 59 90-148 56-119 (130)
352 3h9d_A ATG8, microtubule-assoc 61.8 16 0.00055 22.8 4.6 59 90-148 51-113 (119)
353 3r8s_T 50S ribosomal protein L 61.7 23 0.00078 21.0 5.2 41 85-125 26-67 (93)
354 2c7h_A RBBP6, retinoblastoma-b 61.6 22 0.00075 20.8 7.2 41 3-43 9-51 (86)
355 2inc_C TOUB protein; DIIRON, 4 61.4 21 0.00073 20.7 7.6 59 13-71 15-81 (83)
356 2c7h_A RBBP6, retinoblastoma-b 60.5 23 0.00079 20.7 6.7 33 88-120 19-52 (86)
357 3ge3_C Toluene-4-monooxygenase 59.4 24 0.00081 20.5 6.2 59 13-71 17-82 (84)
358 2xcz_A Possible ATLS1-like lig 58.9 27 0.00091 21.0 5.3 80 23-122 20-100 (115)
359 3h9d_A ATG8, microtubule-assoc 57.9 25 0.00087 21.9 5.0 44 15-58 52-96 (119)
360 3m95_A Autophagy related prote 57.7 18 0.0006 22.8 4.2 59 90-148 56-118 (125)
361 3tca_A Amyloid beta A4 precurs 57.6 18 0.00061 25.5 4.9 40 77-116 35-74 (291)
362 4eku_A Protein-tyrosine kinase 56.0 25 0.00084 26.6 5.6 52 8-59 35-97 (392)
363 1ip9_A BEM1 protein; ubiquitin 56.0 28 0.00096 20.3 5.9 45 77-124 13-58 (85)
364 3tve_T 50S ribosomal protein L 55.3 28 0.00094 20.6 4.6 38 87-124 22-60 (92)
365 3e19_A FEOA; transcriptional r 55.2 14 0.00048 20.6 3.3 29 54-83 29-57 (77)
366 1f2r_I Inhibitor of caspase-ac 55.0 24 0.00082 21.3 4.3 40 96-135 36-79 (100)
367 4gdk_A Ubiquitin-like protein 54.6 26 0.00089 20.6 4.5 56 90-147 23-84 (91)
368 3lxf_A Ferredoxin; iron, iron- 54.6 18 0.00062 21.6 3.9 28 2-29 2-29 (104)
369 2v1y_A Phosphatidylinositol-4, 53.6 25 0.00084 21.6 4.3 60 78-137 21-94 (108)
370 3chb_D Cholera toxin; toxin/re 53.6 17 0.00059 21.1 3.3 31 3-33 39-69 (104)
371 1uiz_A MIF, macrophage migrati 52.7 35 0.0012 20.5 6.6 84 20-122 17-100 (115)
372 3kh0_A Ralgds, ralgef, RAL gua 52.7 42 0.0015 21.4 7.4 70 83-152 34-111 (140)
373 2zjd_A Microtubule-associated 52.6 41 0.0014 21.2 6.6 45 14-58 56-102 (130)
374 2cu1_A Mitogen-activated prote 52.5 36 0.0012 20.5 5.0 42 3-47 9-51 (103)
375 4gdk_A Ubiquitin-like protein 51.9 28 0.00097 20.5 4.3 45 13-57 22-68 (91)
376 1ef5_A RGL; RAS-binding domain 49.3 41 0.0014 20.3 4.7 68 84-151 28-103 (103)
377 2zjr_Q 50S ribosomal protein L 49.0 30 0.001 20.6 4.1 37 88-124 24-61 (95)
378 2os5_A Acemif; macrophage migr 48.7 43 0.0015 20.3 6.4 85 19-122 16-100 (119)
379 2r2q_A Gamma-aminobutyric acid 48.4 31 0.0011 21.0 4.2 46 90-135 47-93 (110)
380 2zkr_s 60S ribosomal protein L 48.3 26 0.00089 23.0 4.0 32 11-42 94-125 (156)
381 1wxm_A A-RAF proto-oncogene se 47.1 41 0.0014 19.6 4.6 42 3-44 10-51 (86)
382 4a17_R RPL23A, 60S ribosomal p 46.5 31 0.0011 22.4 4.1 33 10-42 87-119 (150)
383 2gcx_A FEOA, ferrous iron tran 46.2 22 0.00074 19.7 3.1 37 54-91 24-60 (75)
384 1rax_A Protein (RA-domain of R 45.6 51 0.0018 20.3 5.4 68 84-151 38-113 (115)
385 2bt6_A Adrenodoxin 1; rutheniu 45.3 31 0.0011 20.6 3.9 26 2-27 8-33 (108)
386 2al6_A Focal adhesion kinase 1 45.1 21 0.00071 26.7 3.7 54 5-58 12-76 (375)
387 1vq8_S 50S ribosomal protein L 44.9 41 0.0014 19.5 4.2 36 86-121 22-57 (85)
388 3u5e_X 60S ribosomal protein L 44.9 32 0.0011 22.2 3.9 32 11-42 80-111 (142)
389 2wkb_A Macrophage migration in 44.0 53 0.0018 20.1 6.7 80 24-123 21-101 (125)
390 2r2q_A Gamma-aminobutyric acid 43.9 49 0.0017 20.1 4.7 44 15-58 48-92 (110)
391 1eo6_A GATE-16, golgi-associat 43.9 37 0.0013 20.9 4.1 59 90-148 48-110 (117)
392 2k5l_A FEOA; structure, NESG, 42.8 23 0.0008 20.0 2.9 35 54-89 26-60 (81)
393 2h3j_A Hypothetical protein PA 41.6 16 0.00055 20.1 2.0 21 130-150 25-45 (75)
394 1ltr_D ETB-R2, heat-labIle ent 41.2 23 0.00079 20.8 2.6 31 3-33 38-68 (113)
395 2qwv_A UPF0217 protein VC_A105 40.7 87 0.003 21.5 6.1 54 58-111 49-103 (208)
396 2wlb_A ETP1-FD, electron trans 40.5 43 0.0015 19.7 4.0 28 2-29 5-32 (103)
397 4dxe_H ACP, acyl carrier prote 40.4 1.8 6.2E-05 26.1 -2.3 81 13-109 18-99 (101)
398 1eo6_A GATE-16, golgi-associat 40.2 59 0.002 20.0 4.6 45 14-58 48-93 (117)
399 2y5c_A Adrenodoxin-like protei 39.9 42 0.0014 20.0 3.9 26 2-27 7-32 (109)
400 2k4y_A FEOA-like protein; GFT 39.6 26 0.0009 20.1 2.8 34 55-89 30-63 (86)
401 1lfd_A Ralgds; RAL, effector i 39.4 57 0.002 19.1 6.0 67 83-149 12-86 (87)
402 2al6_A Focal adhesion kinase 1 38.8 30 0.001 25.8 3.6 54 81-134 12-76 (375)
403 3f5r_A FACT complex subunit PO 38.7 40 0.0014 22.9 3.9 49 74-122 82-130 (191)
404 3hrd_D Nicotinate dehydrogenas 38.5 30 0.001 22.7 3.2 26 2-28 5-30 (160)
405 3rui_B Autophagy-related prote 38.5 67 0.0023 19.8 4.7 44 14-57 50-94 (118)
406 4dxa_B KREV interaction trappe 38.3 33 0.0011 24.9 3.8 42 1-46 6-52 (322)
407 3m95_A Autophagy related prote 38.3 65 0.0022 20.2 4.6 45 14-58 56-101 (125)
408 1rm6_C 4-hydroxybenzoyl-COA re 37.9 51 0.0017 21.5 4.3 23 8-30 9-31 (161)
409 3w1s_C Ubiquitin-like protein 37.4 63 0.0021 19.0 5.5 54 90-147 26-84 (91)
410 2y3a_A Phosphatidylinositol-4, 36.9 50 0.0017 28.7 5.0 32 2-33 53-84 (1092)
411 3iz5_X 60S ribosomal protein L 36.7 36 0.0012 22.2 3.3 32 11-42 90-121 (152)
412 2lx9_A Ferrous iron transport 36.7 35 0.0012 19.5 3.0 28 55-82 25-52 (83)
413 1t3q_A Quinoline 2-oxidoreduct 36.1 34 0.0012 22.4 3.2 28 1-29 10-37 (168)
414 2lte_A Specialized acyl carrie 41.9 7.8 0.00027 23.3 0.0 72 22-109 27-98 (103)
415 1j0g_A Hypothetical protein 18 35.4 65 0.0022 18.6 6.2 63 12-74 25-88 (92)
416 1ffv_A CUTS, iron-sulfur prote 34.7 42 0.0014 22.0 3.5 27 2-29 5-31 (163)
417 1hfo_A Migration inhibitory fa 34.5 73 0.0025 18.9 6.6 82 22-122 18-99 (113)
418 1uwm_A Ferredoxin VI, FDVI; el 34.2 64 0.0022 19.0 4.1 26 2-27 2-27 (106)
419 1n62_A Carbon monoxide dehydro 34.2 53 0.0018 21.6 3.9 27 2-29 5-31 (166)
420 3hui_A Ferredoxin; cytochrome 34.0 67 0.0023 19.9 4.2 26 2-27 23-48 (126)
421 1jq4_A Methane monooxygenase c 33.5 61 0.0021 18.7 3.9 28 2-29 6-33 (98)
422 2c5l_C Phosphoinositide-specif 33.5 86 0.003 19.4 5.7 36 85-120 18-61 (117)
423 1xlq_A Putidaredoxin, PDX; [2F 33.4 63 0.0022 19.0 3.9 27 2-28 2-28 (106)
424 1dd4_C 50S ribosomal protein L 32.9 42 0.0014 16.5 2.5 16 24-39 19-34 (40)
425 1awd_A Ferredoxin; electron tr 32.7 59 0.002 18.7 3.7 76 1-79 1-85 (94)
426 3mhx_A Putative ferrous iron t 31.1 46 0.0016 18.9 2.9 20 55-74 30-49 (85)
427 1b44_D ETB-POL, protein (B-POL 31.0 31 0.001 20.8 2.1 31 3-33 38-68 (129)
428 3bbo_V Ribosomal protein L23; 30.5 20 0.00069 24.3 1.3 38 10-47 131-169 (198)
429 3he4_B Synzip5; heterodimeric 30.1 41 0.0014 16.3 2.1 14 20-33 2-15 (46)
430 2uzc_A Human pdlim5, PDZ and L 29.8 75 0.0026 17.6 3.9 45 108-153 41-87 (88)
431 1frr_A Ferredoxin I; electron 29.7 82 0.0028 17.9 6.6 27 2-29 3-29 (95)
432 1wfy_A Regulator of G-protein 29.3 98 0.0033 18.7 4.1 49 84-132 25-75 (104)
433 2nvu_B Maltose binding protein 29.3 1.3E+02 0.0046 24.7 6.4 59 88-146 713-789 (805)
434 3u2a_A Ggdef family protein; p 29.2 47 0.0016 20.2 2.7 16 138-153 79-94 (129)
435 2lu7_A Obscurin-like protein 1 28.6 66 0.0023 17.8 3.3 17 113-129 23-39 (84)
436 1ibx_B Chimera of IGG binding 28.3 27 0.00092 22.6 1.6 38 96-133 81-122 (145)
437 2k5f_A Ferrous iron transport 28.2 55 0.0019 19.6 3.0 35 55-90 26-60 (105)
438 1c1y_B Proto-onkogene serine/t 28.1 88 0.003 17.8 5.9 42 79-120 4-45 (77)
439 3p42_A Predicted protein; beta 28.0 86 0.0029 21.8 4.3 83 60-148 114-203 (236)
440 2j0j_A Focal adhesion kinase 1 27.3 1.6E+02 0.0056 23.5 6.4 54 5-58 12-76 (656)
441 3hhm_A Phosphatidylinositol-4, 27.3 90 0.0031 27.1 5.0 32 3-34 45-76 (1091)
442 4a6q_A Histone deacetylase com 27.2 34 0.0012 22.1 1.9 63 13-75 56-141 (143)
443 4dxa_B KREV interaction trappe 26.9 79 0.0027 22.8 4.2 34 77-114 6-41 (322)
444 2jrh_A Mitogen-activated prote 26.0 1.1E+02 0.0036 18.0 4.9 43 3-48 5-48 (94)
445 3euc_A Histidinol-phosphate am 26.0 71 0.0024 22.9 3.8 27 21-47 67-93 (367)
446 2nvu_B Maltose binding protein 25.8 2E+02 0.0067 23.8 6.7 60 12-71 713-790 (805)
447 2l05_A Serine/threonine-protei 25.4 1.1E+02 0.0038 18.1 6.0 44 77-120 18-61 (95)
448 2zkr_s 60S ribosomal protein L 24.9 1.1E+02 0.0038 20.0 4.1 35 86-120 93-127 (156)
449 1wz3_A Autophagy 12B, ATG12B, 24.7 98 0.0033 18.3 3.6 43 13-58 30-74 (96)
450 2i4s_A General secretion pathw 24.4 1.1E+02 0.0037 17.8 3.9 44 108-152 51-96 (105)
451 3knb_B Obscurin-like protein 1 23.4 38 0.0013 19.8 1.6 19 111-129 39-57 (107)
452 3f5r_A FACT complex subunit PO 23.2 73 0.0025 21.6 3.1 46 2-47 86-131 (191)
453 2c60_A Human mitogen-activated 23.0 1.3E+02 0.0045 18.1 5.4 42 3-47 32-74 (111)
454 2j0j_A Focal adhesion kinase 1 23.0 2.5E+02 0.0087 22.4 6.8 70 81-150 12-97 (656)
455 1rrb_A RAF-1 RBD, RAF proto-on 22.7 1.4E+02 0.0047 18.2 5.1 42 3-45 21-62 (107)
456 3cjl_A Domain of unknown funct 22.7 1.2E+02 0.0042 17.7 3.8 37 2-38 7-45 (88)
457 2he4_A Na(+)/H(+) exchange reg 22.5 1.1E+02 0.0038 17.0 4.3 46 107-152 41-88 (90)
458 1wmh_B Partitioning defective- 22.4 1.2E+02 0.0042 17.6 5.9 45 3-47 7-54 (86)
459 1iue_A Ferredoxin; electron tr 22.2 1.2E+02 0.0042 17.4 3.9 26 3-29 5-30 (98)
460 4i3s_G Outer domain of HIV-1 G 22.1 1.9E+02 0.0064 19.5 5.5 70 40-110 5-77 (190)
461 3b64_A Macrophage migration in 22.0 1.3E+02 0.0045 17.7 6.1 81 23-123 19-101 (112)
462 2npt_B Mitogen-activated prote 21.8 1.4E+02 0.0047 17.8 4.7 42 3-47 21-63 (100)
463 2ktr_A Sequestosome-1; autopha 21.4 1.5E+02 0.0052 18.3 4.8 28 97-124 57-85 (117)
464 2k0q_A Putative uncharacterize 21.2 47 0.0016 18.6 1.5 15 133-147 8-22 (74)
465 2i6v_A General secretion pathw 21.0 1.2E+02 0.0041 16.8 3.5 44 108-152 33-78 (87)
466 3khf_A Microtubule-associated 20.9 70 0.0024 18.3 2.4 43 31-73 47-91 (99)
467 2vsp_A PDZ domain-containing p 20.3 1.2E+02 0.0041 16.9 3.4 45 107-151 40-86 (91)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2.3e-44 Score=245.26 Aligned_cols=153 Identities=29% Similarity=0.416 Sum_probs=147.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE-E-cceEeecCccccccccccccceeeeee-eecce
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGT 77 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~-~g~~L~d~~~L~~~~i~~~~~i~l~~~-~~~~~ 77 (154)
|+|+|+.++|+.+++++++++||.+||++|++.+|+|+++|+|+ | +|+.|+|+.+|++|++.+|++|+++.+ .+++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 79999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=9.1e-44 Score=245.13 Aligned_cols=152 Identities=80% Similarity=1.158 Sum_probs=145.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeE
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++.+..+++.++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|+|||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=4e-42 Score=232.39 Aligned_cols=152 Identities=80% Similarity=1.158 Sum_probs=148.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeE
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+..+|+.+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..++|.+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.8e-24 Score=138.99 Aligned_cols=101 Identities=74% Similarity=1.030 Sum_probs=94.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeE
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
++|+|+.++|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..++.+++.++
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~ 89 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGG 89 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCS
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceee
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred Ee---ecCCceEEEeeCCcchHHH
Q 031706 81 VK---TLTGKEIEIDIEPTDTIER 101 (154)
Q Consensus 81 v~---~~~g~~~~~~v~~~~tV~~ 101 (154)
++ ...|+++.+++.+++||++
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 90 AADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp SCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred ccccccccCceEEEEeccccccCC
Confidence 87 4468888888888888753
No 5
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.89 E-value=6e-23 Score=126.25 Aligned_cols=77 Identities=83% Similarity=1.220 Sum_probs=72.4
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
|.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999996
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=122.43 Aligned_cols=77 Identities=26% Similarity=0.391 Sum_probs=74.9
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
+.|.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=122.06 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++++..|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999988753
No 8
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.88 E-value=1.6e-22 Score=124.36 Aligned_cols=80 Identities=59% Similarity=0.961 Sum_probs=70.2
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGNL 154 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~~ 154 (154)
.+|.+.|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||++
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~~ 87 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGL 87 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999974
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.88 E-value=1.4e-22 Score=124.54 Aligned_cols=78 Identities=55% Similarity=0.908 Sum_probs=72.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeeccee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 78 (154)
|+|+|++.+|+.+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++..++..
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999987754
No 10
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.88 E-value=3.1e-22 Score=125.47 Aligned_cols=90 Identities=81% Similarity=1.093 Sum_probs=74.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeE
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..++..+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EeecCCceEE
Q 031706 81 VKTLTGKEIE 90 (154)
Q Consensus 81 v~~~~g~~~~ 90 (154)
.++.+|+.-.
T Consensus 81 ~~~v~~~~~~ 90 (98)
T 1yx5_B 81 SSSVDKLAAA 90 (98)
T ss_dssp ----------
T ss_pred cccCCCchhh
Confidence 8887775533
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.88 E-value=2.6e-22 Score=122.54 Aligned_cols=71 Identities=23% Similarity=0.427 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|+|+|+++.|++++++++|++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999998863
No 12
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.88 E-value=2.9e-22 Score=123.09 Aligned_cols=79 Identities=81% Similarity=1.200 Sum_probs=76.3
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...|.++|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.87 E-value=5.3e-22 Score=118.57 Aligned_cols=76 Identities=84% Similarity=1.234 Sum_probs=72.1
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=3.9e-22 Score=121.77 Aligned_cols=78 Identities=56% Similarity=0.899 Sum_probs=72.5
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.|.++|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999996
No 15
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=6.5e-22 Score=121.33 Aligned_cols=81 Identities=27% Similarity=0.387 Sum_probs=77.4
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.+.|.++|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 031706 154 L 154 (154)
Q Consensus 154 ~ 154 (154)
.
T Consensus 85 ~ 85 (87)
T 1wh3_A 85 S 85 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=121.83 Aligned_cols=88 Identities=30% Similarity=0.499 Sum_probs=71.9
Q ss_pred ccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCC
Q 031706 60 NIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEG 139 (154)
Q Consensus 60 ~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~ 139 (154)
|..+++++++.++....|.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 355788898998888889999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEe
Q 031706 140 GSVLHLVLA 148 (154)
Q Consensus 140 ~~~i~l~~~ 148 (154)
|++|++++|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999876
No 17
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.87 E-value=8.7e-22 Score=120.16 Aligned_cols=78 Identities=59% Similarity=0.917 Sum_probs=75.1
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.|.++|+..+|+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|++||+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGG 80 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC-
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCC
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999999996
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6.2e-22 Score=124.03 Aligned_cols=78 Identities=59% Similarity=0.923 Sum_probs=75.2
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||
T Consensus 21 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp -CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 458899999999999999999999999999999999999999999999999999999999999999999999999998
No 19
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.87 E-value=9.9e-22 Score=122.65 Aligned_cols=78 Identities=62% Similarity=0.949 Sum_probs=73.8
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
+|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 488999999999999999999999999999999999999999999999999999999999999999999999999995
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.87 E-value=1.4e-21 Score=116.75 Aligned_cols=76 Identities=63% Similarity=0.993 Sum_probs=73.8
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++++|++|+++++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.87 E-value=9.2e-22 Score=117.52 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987654
No 22
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.87 E-value=5.2e-22 Score=120.90 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceE-eecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~-L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+++++++++||.+||++|++.+|+|+++|+|+|+|+. |+|+.+|++|++.+|++|++++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998753
No 23
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.86 E-value=2.1e-21 Score=124.24 Aligned_cols=93 Identities=53% Similarity=0.773 Sum_probs=83.1
Q ss_pred ccccccceeeeeee--------ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCc
Q 031706 60 NIQKESTLHLVLRL--------RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKT 131 (154)
Q Consensus 60 ~i~~~~~i~l~~~~--------~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~ 131 (154)
.+.+|+++++.... ...|.++|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~t 90 (111)
T 2ojr_A 11 GWIEGDELYIDTNNDGWIEGDELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 90 (111)
T ss_dssp SSCCGGGBCCCTTCSSSCCGGGSSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCB
T ss_pred ceecCCEEEEeecccccccCCCCCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCc
Confidence 35566666666543 2468999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEEEeecCC
Q 031706 132 ARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 132 L~~~~i~~~~~i~l~~~~~gg 152 (154)
|++|+++++++|++++|++||
T Consensus 91 L~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 91 LSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp TTTTTCCTTCEEEEEECCCC-
T ss_pred HHHcCCCCCCEEEEEEeCCCC
Confidence 999999999999999999998
No 24
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.86 E-value=1.7e-21 Score=116.35 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988764
No 25
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.86 E-value=6.5e-22 Score=121.61 Aligned_cols=79 Identities=27% Similarity=0.397 Sum_probs=71.7
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
..|.|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||+
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4588999999999999999999999999999999999999999999999999999999999999999999999999996
No 26
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.86 E-value=8.3e-22 Score=118.78 Aligned_cols=77 Identities=23% Similarity=0.476 Sum_probs=73.9
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
.|.++|++.+|+++.++|++++||.+||++++++.|+|+++|+|+|+|+.|+|+.+|++|+++++++|+++++++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999998
No 27
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.5e-21 Score=122.32 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++..+|
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988764
No 28
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.86 E-value=1.1e-21 Score=120.54 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=73.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..+|
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988764
No 29
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.9e-21 Score=119.48 Aligned_cols=76 Identities=87% Similarity=1.271 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988765
No 30
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.86 E-value=3.1e-21 Score=117.77 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=70.3
Q ss_pred eeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 71 LRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 71 ~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
......+.|+|++..|+++.+++++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++..
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999864
No 31
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.86 E-value=2.5e-21 Score=120.84 Aligned_cols=79 Identities=91% Similarity=1.229 Sum_probs=73.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMI 79 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i 79 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.++..++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999887654
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.86 E-value=2.4e-21 Score=120.31 Aligned_cols=79 Identities=23% Similarity=0.379 Sum_probs=75.2
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCC-CcccccCCCCCCEEEEEEeecCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD-KTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...|.|+|+...+ ++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|+++++|+++++++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 4568899999888 889999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred C
Q 031706 153 N 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 6
No 33
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.86 E-value=3.6e-21 Score=123.09 Aligned_cols=78 Identities=62% Similarity=0.951 Sum_probs=74.8
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 358899999999999999999999999999999999999999999999999999999999999999999999999998
No 34
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.86 E-value=1.7e-21 Score=118.93 Aligned_cols=76 Identities=80% Similarity=1.167 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998765
No 35
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=5.5e-21 Score=117.68 Aligned_cols=79 Identities=35% Similarity=0.550 Sum_probs=75.4
Q ss_pred cceeeEEeecCC-ceEEE-eeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 75 GGTMIKVKTLTG-KEIEI-DIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~g-~~~~~-~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..|.|+|+..+| +++.+ ++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 458999999999 69999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 031706 153 N 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 6
No 36
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.85 E-value=1.5e-21 Score=117.64 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=72.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|++.+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..||
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987764
No 37
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.85 E-value=2.1e-21 Score=121.38 Aligned_cols=79 Identities=23% Similarity=0.456 Sum_probs=76.1
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...|.|+|++.+|+++.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999999998
No 38
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.85 E-value=2.8e-21 Score=119.49 Aligned_cols=73 Identities=92% Similarity=1.257 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++|+++++.
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999875
No 39
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=120.17 Aligned_cols=77 Identities=27% Similarity=0.442 Sum_probs=72.0
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...|.|+|+. |+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4458899997 7899999999999999999999999999999999999999999999999999999999999999998
No 40
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=3.6e-21 Score=117.40 Aligned_cols=76 Identities=92% Similarity=1.254 Sum_probs=73.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|++.++++|++.++..++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988764
No 41
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=119.41 Aligned_cols=76 Identities=37% Similarity=0.616 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|++.+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..++
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999887755
No 42
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.85 E-value=5.3e-21 Score=117.98 Aligned_cols=75 Identities=33% Similarity=0.573 Sum_probs=71.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++ +|++|+++.+..++
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999 89999999987643
No 43
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.85 E-value=1.8e-21 Score=121.03 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|+|+|+++.|+.+++++++++||.+||++|++++|+|+++|+|+|.|+.|+|+.+|++|+|.++++|++..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999998864
No 44
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.9e-21 Score=118.83 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCEEEEEEc--CCCcHHHHHHHH-HhHhCCCCCceEEEEcceEeecCcccccccc-ccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~--~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~~ 74 (154)
|+|+||+.+|++++++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|++ .+|++|++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999988766 999999999999 9999999999999999999999999999999 7999999988753
No 45
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=4.5e-21 Score=117.54 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=73.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|++.++++|++..+..++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998765
No 46
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.85 E-value=5.5e-21 Score=114.86 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCEE-EEE-EcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~-~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+ .++ +++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 7999999999885 999 999999999999999999999999999999999999999999999999999998875
No 47
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.84 E-value=1.1e-20 Score=116.76 Aligned_cols=77 Identities=60% Similarity=0.952 Sum_probs=73.7
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
...|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999986
No 48
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.84 E-value=8.7e-21 Score=116.54 Aligned_cols=71 Identities=35% Similarity=0.627 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++ +|++||++.|
T Consensus 18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999 8999999864
No 49
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.84 E-value=8.5e-21 Score=121.36 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=72.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++++++.+|
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998764
No 50
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.84 E-value=8.4e-21 Score=117.89 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecC-ccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+| .+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|++++|++|+++.++.++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 6899999887 899999999999999999999999999999999999999999 99999999999999999998765
No 51
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=9.5e-21 Score=116.60 Aligned_cols=77 Identities=36% Similarity=0.619 Sum_probs=73.0
Q ss_pred CEEEEEeCCC-CEEEE-EEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecce
Q 031706 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 1 m~v~v~~~~g-~~~~~-~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (154)
|+|+|+..+| +.+.+ ++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.++++|++++++.++.
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 7899999999 79999 59999999999999999999999999999999999999999999999999999999987663
No 52
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.84 E-value=1.9e-20 Score=117.28 Aligned_cols=77 Identities=62% Similarity=0.981 Sum_probs=73.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
|.|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999985
No 53
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=113.65 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765
No 54
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.84 E-value=9.2e-21 Score=121.25 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=77.0
Q ss_pred eecceeeEEeec---CCceEEEeeCC-cchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 73 LRGGTMIKVKTL---TGKEIEIDIEP-TDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 73 ~~~~~~i~v~~~---~g~~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
..+.|.++|+.+ +|+.+.+++++ ++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 456789999998 88999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 031706 149 LRGGN 153 (154)
Q Consensus 149 ~~gg~ 153 (154)
++||+
T Consensus 104 ~~GGk 108 (111)
T 1we6_A 104 ERSGP 108 (111)
T ss_dssp SCCSS
T ss_pred cCCCC
Confidence 99997
No 55
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.84 E-value=6.2e-21 Score=119.23 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|++.+|+.+.++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|++.++++|+++++..||
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987764
No 56
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.84 E-value=2.9e-20 Score=111.68 Aligned_cols=76 Identities=28% Similarity=0.546 Sum_probs=71.5
Q ss_pred cceeeEEeecCCceE-EEe-eCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 75 GGTMIKVKTLTGKEI-EID-IEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~-~~~-v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
++|.++|+..+|+++ .++ +++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~~ 78 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQS 78 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECCC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 468999999999985 899 9999999999999999999999999999999999999999999999999999999864
No 57
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=2.6e-20 Score=116.01 Aligned_cols=74 Identities=30% Similarity=0.585 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhH---hCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 899999999999999999999999999999999 78999999999999999999999999999999999988753
No 58
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.83 E-value=2.4e-20 Score=115.01 Aligned_cols=77 Identities=34% Similarity=0.538 Sum_probs=73.2
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..|.|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+| +|++|+++++.+++
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 458899999999999999999999999999999999999999999999999999999999999 89999999999876
No 59
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.83 E-value=2.3e-20 Score=127.49 Aligned_cols=77 Identities=60% Similarity=0.948 Sum_probs=73.5
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
|.++|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|++||+
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999995
No 60
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.83 E-value=2.5e-20 Score=127.36 Aligned_cols=82 Identities=91% Similarity=1.232 Sum_probs=75.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeE
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++++|++||++++..++..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998775544
Q ss_pred Ee
Q 031706 81 VK 82 (154)
Q Consensus 81 v~ 82 (154)
|+
T Consensus 81 vk 82 (169)
T 3l0w_B 81 IK 82 (169)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 61
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.83 E-value=1.6e-20 Score=116.57 Aligned_cols=79 Identities=30% Similarity=0.461 Sum_probs=73.8
Q ss_pred cceeeEEeecCCc--eEEEeeCCcchHHHHHHHHhhhc--CCCCcceEEEECCeecCCCCccccc--CCCCCCEEEEEEe
Q 031706 75 GGTMIKVKTLTGK--EIEIDIEPTDTIERIKERVEEKE--GIPPVQQRLIYAGKQLADDKTARDY--NIEGGSVLHLVLA 148 (154)
Q Consensus 75 ~~~~i~v~~~~g~--~~~~~v~~~~tV~~LK~~i~~~~--gi~~~~q~l~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~ 148 (154)
..|.++|+..+++ ++.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|+++++|+++++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4588999998888 67788889999999999999999 9999999999999999999999999 9999999999999
Q ss_pred ecCCC
Q 031706 149 LRGGN 153 (154)
Q Consensus 149 ~~gg~ 153 (154)
++||+
T Consensus 86 ~~gg~ 90 (93)
T 1wgd_A 86 VKSGP 90 (93)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99995
No 62
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.1e-20 Score=118.62 Aligned_cols=80 Identities=58% Similarity=0.917 Sum_probs=76.8
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.+...++++..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999995
No 63
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.83 E-value=9.4e-21 Score=130.94 Aligned_cols=82 Identities=89% Similarity=1.183 Sum_probs=79.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeE
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIK 80 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~ 80 (154)
|+|+|+..+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+++++++|++++++.++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred Ee
Q 031706 81 VK 82 (154)
Q Consensus 81 v~ 82 (154)
|+
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 75
No 64
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=116.82 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++++++.+|
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7899997 8999999999999999999999999999999999999999999999999999999999999988764
No 65
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.83 E-value=3.1e-20 Score=113.26 Aligned_cols=74 Identities=30% Similarity=0.531 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhH---hCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|++. +|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.+..
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 789999999999999999999999999999998 89999999999999999999999999999999999988754
No 66
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.83 E-value=2.1e-20 Score=116.51 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEE--EEcCCCcHHHHHHHH-HhHhCCCCCceEEEEcceEeecCcccccccc-ccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~--~v~~~~tV~~lK~~i-~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~ 73 (154)
|+|+||+.+|+.+++ ++++++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 789999999998777 556999999999999 8888999999999999999999999999999 999999998864
No 67
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.1e-20 Score=119.92 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998754
No 68
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.82 E-value=3.9e-20 Score=127.86 Aligned_cols=80 Identities=61% Similarity=0.956 Sum_probs=77.3
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
...|.++|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~ 182 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 182 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999996
No 69
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.72 E-value=4.7e-22 Score=118.96 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988764
No 70
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.82 E-value=4.5e-20 Score=110.49 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+. +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+.+|++|++..+.
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 6889998 89999999999999999999999999999999999999999999999999999999999987653
No 71
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.82 E-value=5e-20 Score=112.07 Aligned_cols=74 Identities=27% Similarity=0.412 Sum_probs=71.0
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCee-cCCCCcccccCCCCCCEEEEEEe
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQ-LADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~-L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
.-|.++|+...|+++.+++++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|+|++|++|+++++
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 348899999999999999999999999999999999999999999999999 99999999999999999999876
No 72
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=3.5e-20 Score=114.99 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=70.8
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHhHh--CCCCCceEEEEcceEeecCcccccc--ccccccceeeeeeee
Q 031706 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~--~i~~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+ .+.+++++++||.+||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| ++.++++||++.+..
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 78999999988 56777779999999999999998 9999999999999999999999999 999999999999887
Q ss_pred cc
Q 031706 75 GG 76 (154)
Q Consensus 75 ~~ 76 (154)
++
T Consensus 88 gg 89 (93)
T 1wgd_A 88 SG 89 (93)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 73
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.82 E-value=4.4e-20 Score=114.77 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=67.5
Q ss_pred eeEEeecC----CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 78 MIKVKTLT----GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 78 ~i~v~~~~----g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
++.|+..+ ++++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|++|++| ++++++|.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 34455544 6789999999999999999999999999999999999999999999999999999999 88888885
No 74
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.82 E-value=8.8e-20 Score=116.66 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=72.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++.+++.+|
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988764
No 75
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.81 E-value=8.6e-20 Score=117.41 Aligned_cols=69 Identities=32% Similarity=0.583 Sum_probs=67.0
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 578899999999999999999999999999999999999999999999999999999999999999997
No 76
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=109.47 Aligned_cols=76 Identities=37% Similarity=0.578 Sum_probs=72.2
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
..|.++|+..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 4588999998999999999999999999999999999999999999999999999999999999999999999874
No 77
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.81 E-value=1.2e-19 Score=115.46 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=70.5
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCcccccccccc-------ccceeeeee
Q 031706 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~-------~~~i~l~~~ 72 (154)
|.|+++...++ ++.+++.+++||.+||++|+...|+|+++|+|+|+|+.|+|+++|++|||.+ +++|+++++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 78899888776 6889999999999999999999999999999999999999999999999999 999999998
Q ss_pred eec
Q 031706 73 LRG 75 (154)
Q Consensus 73 ~~~ 75 (154)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 744
No 78
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=8.3e-20 Score=114.63 Aligned_cols=75 Identities=35% Similarity=0.479 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 78999999886 7999999999999999999999999999999999999999999999999999999999887654
No 79
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.69 E-value=2e-21 Score=116.23 Aligned_cols=75 Identities=27% Similarity=0.511 Sum_probs=72.4
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
|.++|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|++++|+||
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 678899999999999999999999999999999999999999999999999999999999999999999999997
No 80
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.80 E-value=1.2e-19 Score=122.96 Aligned_cols=76 Identities=37% Similarity=0.616 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++++|++|++.+++.||
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999998775
No 81
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=6.3e-20 Score=114.43 Aligned_cols=75 Identities=28% Similarity=0.373 Sum_probs=71.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.+..++
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 68999998 8999999999999999999999999999999999999999999999999999999999999987654
No 82
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=1.1e-19 Score=112.90 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=68.7
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
|.|+|++..|+++.++|++++||.+||++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|+++++|+|..
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 88999999999999999999999999999999999999999999999999999999999999999999864
No 83
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=3.2e-20 Score=116.76 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC---------------ceEEEEcceEee-cCccccccccccc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~---------------~q~L~~~g~~L~-d~~~L~~~~i~~~ 64 (154)
|+|+|+.++|+.++++|++++||.+||++|++++++|+. .|+|+|+|+.|. |+.+|++|||++|
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999874 569999999996 6689999999999
Q ss_pred cceeeeeeeecc
Q 031706 65 STLHLVLRLRGG 76 (154)
Q Consensus 65 ~~i~l~~~~~~~ 76 (154)
++|+++.+..+.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999987654
No 84
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=2e-19 Score=112.89 Aligned_cols=79 Identities=28% Similarity=0.366 Sum_probs=74.2
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
...|.|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||.
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~p 98 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 98 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCSC
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCCC
Confidence 45588999998886 68999999999999999999999999999999999999999999999999999999999999984
No 85
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1e-19 Score=115.38 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.+..
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998754
No 86
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.80 E-value=1.1e-19 Score=115.97 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=68.3
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccc-------cccceeeeee
Q 031706 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~-------~~~~i~l~~~ 72 (154)
|+++|+...++ ++.+++++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|||. ++++|++.++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 78888887776 589999999999999999999999999999999999999999999999999 7999999998
Q ss_pred e
Q 031706 73 L 73 (154)
Q Consensus 73 ~ 73 (154)
.
T Consensus 81 ~ 81 (118)
T 2fnj_B 81 A 81 (118)
T ss_dssp S
T ss_pred C
Confidence 3
No 87
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=4.5e-19 Score=110.32 Aligned_cols=76 Identities=32% Similarity=0.627 Sum_probs=71.7
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhh---cCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEK---EGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~---~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|.|+|+..+|+.+.+++++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++.+.|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 678999999999999999999999999999999 7899999999999999999999999999999999999987654
No 88
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=112.62 Aligned_cols=74 Identities=32% Similarity=0.446 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..+..+
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 68999988 889999999999999999999999999999999999999999999999999999999999887653
No 89
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.80 E-value=5.9e-19 Score=107.57 Aligned_cols=77 Identities=34% Similarity=0.598 Sum_probs=70.9
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhh---cCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEK---EGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~---~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
+..|.++|+..+|+.+.+++++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+.+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 356899999999999999999999999999999997 89999999999999999999999999999999999998754
No 90
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.80 E-value=3.4e-21 Score=126.18 Aligned_cols=77 Identities=60% Similarity=0.934 Sum_probs=0.6
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
|.|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999996
No 91
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.80 E-value=1.5e-19 Score=112.42 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=64.9
Q ss_pred EEEEEeCC----CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 2 QIFVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 2 ~v~v~~~~----g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
.+.|+..+ ++.++++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|++|++| +++++.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lr 92 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELK 92 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCC
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEEC
Confidence 36677776 7789999999999999999999999999999999999999999999999999999999 444443
No 92
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.80 E-value=7.1e-20 Score=114.21 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=74.3
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
..|.|+|+.. |+++.+++++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||+
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSGP 93 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSCS
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 4488999988 88999999999999999999999999999999999999999999999999999999999999999985
No 93
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.80 E-value=1.6e-19 Score=115.26 Aligned_cols=75 Identities=23% Similarity=0.222 Sum_probs=67.4
Q ss_pred eeeEEeecCCc-eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCC-------CCCEEEEEEe
Q 031706 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIE-------GGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~-------~~~~i~l~~~ 148 (154)
|.++++...++ ++.++|.+++||.+||++|+.++|+|+++|+|+|+|+.|+|+++|++|+|+ ++++|++.+|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 34555555565 588999999999999999999999999999999999999999999999999 7999999999
Q ss_pred ecCC
Q 031706 149 LRGG 152 (154)
Q Consensus 149 ~~gg 152 (154)
.||
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 666
No 94
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.2e-19 Score=110.76 Aligned_cols=73 Identities=22% Similarity=0.404 Sum_probs=68.2
Q ss_pred eeeEEeecCCceEEEeeC--CcchHHHHHHHH-hhhcCCCCcceEEEECCeecCCCCcccccCC-CCCCEEEEEEee
Q 031706 77 TMIKVKTLTGKEIEIDIE--PTDTIERIKERV-EEKEGIPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~--~~~tV~~LK~~i-~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~ 149 (154)
|.|+|++..|+++.++++ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 789999999999888755 999999999999 9999999999999999999999999999999 799999998763
No 95
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.79 E-value=5.1e-19 Score=110.23 Aligned_cols=77 Identities=22% Similarity=0.402 Sum_probs=70.1
Q ss_pred ecceeeEEeecCCceEEE--eeCCcchHHHHHHHH-hhhcCCCCcceEEEECCeecCCCCcccccCC-CCCCEEEEEEee
Q 031706 74 RGGTMIKVKTLTGKEIEI--DIEPTDTIERIKERV-EEKEGIPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLAL 149 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~--~v~~~~tV~~LK~~i-~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~ 149 (154)
.+.|.|+|++.+|+.+.+ ++++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+++++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 456899999999998766 566999999999999 8888999999999999999999999999999 999999999875
Q ss_pred c
Q 031706 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
+
T Consensus 97 p 97 (98)
T 4a20_A 97 N 97 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.5e-19 Score=115.42 Aligned_cols=78 Identities=26% Similarity=0.321 Sum_probs=70.1
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
..|.|+|+.. |+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|.+|+|++|++|+++.+++||+
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 4588999988 88999999999999999999999999999999999999999999999999999999999999999985
No 97
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.79 E-value=1.3e-19 Score=115.92 Aligned_cols=76 Identities=33% Similarity=0.468 Sum_probs=72.3
Q ss_pred CEEEEEeC---CCCEEEEEEcC-CCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~---~g~~~~~~v~~-~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+.+ +|+.+.+++++ ++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.++..++
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999998 88999999998 999999999999999999999999999999999999999999999999999988765
No 98
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=4.3e-19 Score=115.51 Aligned_cols=75 Identities=31% Similarity=0.401 Sum_probs=68.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+.. |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+..++
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 68999998 8999999999999999999999999999999999999999999999999999999999999887654
No 99
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.3e-19 Score=113.06 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=70.0
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
|.|+|+..+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998754
No 100
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.79 E-value=6.4e-19 Score=113.71 Aligned_cols=80 Identities=29% Similarity=0.417 Sum_probs=72.6
Q ss_pred ecceeeEEeecCCceE-EEeeCCcchHHHHHHHH-----hhhcCCCC--cceEEEECCeecCCCCcccccCCCCC-----
Q 031706 74 RGGTMIKVKTLTGKEI-EIDIEPTDTIERIKERV-----EEKEGIPP--VQQRLIYAGKQLADDKTARDYNIEGG----- 140 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~-~~~v~~~~tV~~LK~~i-----~~~~gi~~--~~q~l~~~g~~L~d~~~L~~~~i~~~----- 140 (154)
...|.|.+++.+|+.+ .+++++++||.+||++| ++..|+|+ ++|+|+|.|+.|+|+.+|++|+|+.+
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 3568899999999888 79999999999999999 45667886 89999999999999999999999998
Q ss_pred -CEEEEEEeecCCC
Q 031706 141 -SVLHLVLALRGGN 153 (154)
Q Consensus 141 -~~i~l~~~~~gg~ 153 (154)
++++|+++++||+
T Consensus 94 v~tmhlVlrl~g~~ 107 (126)
T 1se9_A 94 VTTMHVIIQAPVTE 107 (126)
T ss_dssp CEEEEEEECCCSSC
T ss_pred cEEEEEEeccCCcc
Confidence 7899999999984
No 101
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.79 E-value=3.2e-19 Score=113.44 Aligned_cols=75 Identities=23% Similarity=0.213 Sum_probs=68.0
Q ss_pred eeeEEeecCCc-eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCC-------CCEEEEEEe
Q 031706 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEG-------GSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~-------~~~i~l~~~ 148 (154)
|.++++...++ ++.+++.+++||.+||++|+.+.|+|+++|+|+|.|+.|+|++||++|||++ +++|++++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 44566665555 7889999999999999999999999999999999999999999999999999 999999999
Q ss_pred ecC
Q 031706 149 LRG 151 (154)
Q Consensus 149 ~~g 151 (154)
..|
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 844
No 102
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.79 E-value=5.4e-21 Score=125.25 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|++.+|+++++++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++..+|
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988765
No 103
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.79 E-value=6.1e-21 Score=127.85 Aligned_cols=77 Identities=60% Similarity=0.948 Sum_probs=0.0
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
|.|+|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++++||+
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999995
No 104
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.79 E-value=3e-19 Score=112.48 Aligned_cols=76 Identities=20% Similarity=0.376 Sum_probs=70.3
Q ss_pred CEEEEEeCCC----CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecC-ccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g----~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+...+ +.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|++|++|++..+..+
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7899998754 6899999999999999999999999999999999999999887 6999999999999999988765
Q ss_pred c
Q 031706 76 G 76 (154)
Q Consensus 76 ~ 76 (154)
+
T Consensus 88 g 88 (102)
T 1v5o_A 88 G 88 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 105
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=3.9e-19 Score=112.76 Aligned_cols=75 Identities=35% Similarity=0.479 Sum_probs=70.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..+..++
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 78999998886 7999999999999999999999999999999999999999999999999999999999887654
No 106
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=9.1e-19 Score=111.03 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=74.6
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...|.|+|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++++.+.+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3458899999999999999999999999999999999999999999999999999999999999999999999988765
No 107
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.3e-19 Score=113.88 Aligned_cols=93 Identities=34% Similarity=0.602 Sum_probs=68.0
Q ss_pred ccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCccc
Q 031706 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTAR 133 (154)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~ 133 (154)
...++|.|. +|.++.......+.+.|+. +|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 457788774 5666665555557788887 8899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCEEEEEEee
Q 031706 134 DYNIEGGSVLHLVLAL 149 (154)
Q Consensus 134 ~~~i~~~~~i~l~~~~ 149 (154)
+|+|++|++|+++.+.
T Consensus 85 ~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 85 SYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp TTTCCTTEEEEECCCC
T ss_pred HCCCCCCCEEEEEeCC
Confidence 9999999999998764
No 108
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.78 E-value=1.7e-18 Score=103.52 Aligned_cols=71 Identities=38% Similarity=0.684 Sum_probs=68.1
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
|.++|+. +|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 7888998 8999999999999999999999999999999999999999999999999999999999999875
No 109
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.78 E-value=9.9e-19 Score=109.52 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=67.6
Q ss_pred CEEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCcccccccc-ccccceeeeeee
Q 031706 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~~ 73 (154)
|+|+|+...+ ..++++++|++||.+||++|++++|+||+.|||+|+|+.++|+.+|++||| .+|+++|+.+..
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6789999874 689999999999999999999999999999999999999999999999999 599999998753
No 110
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=7.6e-19 Score=111.42 Aligned_cols=78 Identities=28% Similarity=0.374 Sum_probs=73.4
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
..|.|+|+...++ +.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||.
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHRA 93 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCCS
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCCC
Confidence 4488899988886 68999999999999999999999999999999999999999999999999999999999999985
No 111
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=1.1e-18 Score=111.66 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHh------HhCC--CCCceEEEEcceEeecCccccccccccc--cceeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~------~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~--~~i~l~ 70 (154)
|+|+|++.+|+++++++++++||.+||++|++ .+++ |+++|+|+|.|+.|+|+.+|++|+|..+ .++|++
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999998 5575 6999999999999999999999999766 578888
Q ss_pred eeee
Q 031706 71 LRLR 74 (154)
Q Consensus 71 ~~~~ 74 (154)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8765
No 112
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=108.42 Aligned_cols=80 Identities=25% Similarity=0.317 Sum_probs=73.2
Q ss_pred eeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecC
Q 031706 72 RLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 72 ~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
.....|.|+|+.. |+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++.+++.
T Consensus 21 ~~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 21 GHPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp --CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 3445688999988 888999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 031706 152 G 152 (154)
Q Consensus 152 g 152 (154)
.
T Consensus 100 ~ 100 (101)
T 2klc_A 100 R 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=2.2e-19 Score=112.95 Aligned_cols=77 Identities=21% Similarity=0.355 Sum_probs=71.8
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCc---------------ceEEEECCeecC-CCCcccccCCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV---------------QQRLIYAGKQLA-DDKTARDYNIEG 139 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~---------------~q~l~~~g~~L~-d~~~L~~~~i~~ 139 (154)
.|.|+|+..+|+++.++|++++||++||++|+++.++|+. +|+|+|+|+.|. |+.+|++|+|++
T Consensus 7 ~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 7 GMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp SEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred cEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 4899999999999999999999999999999999999874 569999999996 779999999999
Q ss_pred CCEEEEEEeecCC
Q 031706 140 GSVLHLVLALRGG 152 (154)
Q Consensus 140 ~~~i~l~~~~~gg 152 (154)
|++|+++.+++|.
T Consensus 87 g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 87 RDEVSFIKKLGQK 99 (105)
T ss_dssp SEEEEEEECSCSC
T ss_pred CCEEEEEehhccC
Confidence 9999999999985
No 114
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.78 E-value=6.9e-19 Score=110.84 Aligned_cols=79 Identities=19% Similarity=0.393 Sum_probs=72.3
Q ss_pred cceeeEEeecCC----ceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCC-CcccccCCCCCCEEEEEEee
Q 031706 75 GGTMIKVKTLTG----KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD-KTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 75 ~~~~i~v~~~~g----~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~ 149 (154)
..|.|+|+...+ +++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|+|++|++|+++.+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 347888888644 7899999999999999999999999999999999999999977 69999999999999999999
Q ss_pred cCCC
Q 031706 150 RGGN 153 (154)
Q Consensus 150 ~gg~ 153 (154)
+||.
T Consensus 86 ~gg~ 89 (102)
T 1v5o_A 86 NVGL 89 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9983
No 115
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=118.68 Aligned_cols=79 Identities=61% Similarity=0.947 Sum_probs=75.8
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...|.++|+..+|+++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|+++++++||
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg 96 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeeccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999988
No 116
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.78 E-value=1.5e-20 Score=126.03 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++++.++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998776
No 117
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=112.68 Aligned_cols=76 Identities=26% Similarity=0.443 Sum_probs=68.7
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCcHHHHHHHHH-----hHhCCCC--CceEEEEcceEeecCccccccccccc------cc
Q 031706 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (154)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~-----~~~~i~~--~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (154)
|+|+|+..+|+.+ ++++++++||.+||++|+ ..+|+|+ ++|+|+|+|+.|+|+.+|++|+|..+ .+
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999888 799999999999999994 5567886 79999999999999999999999988 67
Q ss_pred eeeeeeeecc
Q 031706 67 LHLVLRLRGG 76 (154)
Q Consensus 67 i~l~~~~~~~ 76 (154)
+|+++++.++
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 8998888754
No 118
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.8e-19 Score=113.23 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=67.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
|+|+|++ +|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++||+++|++|+++.+
T Consensus 29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 4678887 8899999999999999999999999999999999999999999999999999999999998865
No 119
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=109.90 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=63.9
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHhH-hCCC-CCceEEEEcceEeecCcccccc--ccccccceeee
Q 031706 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~-~~i~-~~~q~L~~~g~~L~d~~~L~~~--~i~~~~~i~l~ 70 (154)
|+|+||.++|+ .+++++++++||.+||++|+++ .|+| +++|+|+|+|+.|+|+.+|++| +|.++++|+++
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 68999999987 6789999999999999999986 5665 5999999999999999999999 99999999874
No 120
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.77 E-value=9.7e-19 Score=113.33 Aligned_cols=75 Identities=24% Similarity=0.387 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHh------HhCC--CCCceEEEEcceEeecCcccccccccccc--ceeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~------~~~i--~~~~q~L~~~g~~L~d~~~L~~~~i~~~~--~i~l~ 70 (154)
|+|+|++.+|+++++++++++||.+||++|++ ++|+ |+++|+|+|+|+.|+|+.+|++|+|..++ +++++
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 67999999999999999999999999999998 6787 48999999999999999999999999766 67888
Q ss_pred eeeec
Q 031706 71 LRLRG 75 (154)
Q Consensus 71 ~~~~~ 75 (154)
+++.+
T Consensus 98 ~r~~~ 102 (125)
T 2gow_A 98 ARETL 102 (125)
T ss_dssp ECSCC
T ss_pred ecCCC
Confidence 87753
No 121
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.77 E-value=1.5e-18 Score=111.56 Aligned_cols=76 Identities=29% Similarity=0.577 Sum_probs=70.1
Q ss_pred CEEEEEeCC----------CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLT----------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~----------g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
++|.|+.++ |+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 357777763 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecc
Q 031706 71 LRLRGG 76 (154)
Q Consensus 71 ~~~~~~ 76 (154)
++..++
T Consensus 106 ~rl~GG 111 (115)
T 1we7_A 106 LKERSG 111 (115)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 998765
No 122
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=109.69 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=69.6
Q ss_pred EEEEE-eCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecce
Q 031706 2 QIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 2 ~v~v~-~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (154)
.|.|+ ..+|..++++++++.||.+||++++...++|++.|+|+|+|+.|.|+.+|++||+++|.+||++++...+.
T Consensus 17 tvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~ 93 (118)
T 2daf_A 17 TVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPD 93 (118)
T ss_dssp EEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTT
T ss_pred EEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCc
Confidence 45665 56788999999999999999999999999999999999999999999999999999999999999876543
No 123
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=2.6e-18 Score=104.75 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.2
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
..++..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3566678999999999999999999999999999999999999999999999999999999999988754
No 124
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.76 E-value=3.4e-18 Score=114.79 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|++.+|++|++..++.||
T Consensus 77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999988764
No 125
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.76 E-value=1.3e-18 Score=107.20 Aligned_cols=73 Identities=21% Similarity=0.408 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCEEEE-EEcCCCcHHHHHHHHHhHhCCCCCceEEE---EcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~-~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+. +|+.+.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+++....
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 7899996 7889999 99999999999999999999999999999 999999999999999999999999886543
No 126
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=7.5e-18 Score=107.73 Aligned_cols=80 Identities=26% Similarity=0.334 Sum_probs=70.6
Q ss_pred eecceeeEEeecCCceEEEeeCCcchHHHHHHHHhh------hcCC--CCcceEEEECCeecCCCCcccccCCCCC--CE
Q 031706 73 LRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE------KEGI--PPVQQRLIYAGKQLADDKTARDYNIEGG--SV 142 (154)
Q Consensus 73 ~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~------~~gi--~~~~q~l~~~g~~L~d~~~L~~~~i~~~--~~ 142 (154)
+...|.|+|++..|+++.++|++++||++||++|++ ++++ |+++|+|+|.|+.|+|+.+|++|+|+.+ ++
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 345689999999999999999999999999999998 5565 6999999999999999999999999866 57
Q ss_pred EEEEEeecCC
Q 031706 143 LHLVLALRGG 152 (154)
Q Consensus 143 i~l~~~~~gg 152 (154)
+||++|+.+.
T Consensus 93 lhLvlr~~~~ 102 (116)
T 1wgh_A 93 MHLVARETLP 102 (116)
T ss_dssp EEEEECSSCS
T ss_pred EEEEccCCCC
Confidence 8888887654
No 127
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=1.6e-18 Score=107.95 Aligned_cols=72 Identities=17% Similarity=0.287 Sum_probs=67.0
Q ss_pred CEEEEEeCCCCEE-EEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+. .|+.+ .+++++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|+|++|++|+++....
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 6899995 68899 6999999999999999999999999999999999999999 99999999999999887654
No 128
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.75 E-value=5e-18 Score=109.96 Aligned_cols=77 Identities=27% Similarity=0.352 Sum_probs=70.7
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhh------hcCC--CCcceEEEECCeecCCCCcccccCCCCCC--EEEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE------KEGI--PPVQQRLIYAGKQLADDKTARDYNIEGGS--VLHL 145 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~------~~gi--~~~~q~l~~~g~~L~d~~~L~~~~i~~~~--~i~l 145 (154)
.|.|.+++..|+++.+++++++||++||++|++ ++++ |+++|+|+|.|+.|+|+.+|++|+|+.++ ++++
T Consensus 17 ~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhl 96 (125)
T 2gow_A 17 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHL 96 (125)
T ss_dssp CEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEE
Confidence 478899999999999999999999999999998 6677 48999999999999999999999999776 7899
Q ss_pred EEeecCC
Q 031706 146 VLALRGG 152 (154)
Q Consensus 146 ~~~~~gg 152 (154)
++|++++
T Consensus 97 v~r~~~~ 103 (125)
T 2gow_A 97 VARETLP 103 (125)
T ss_dssp EECSCCS
T ss_pred EecCCCC
Confidence 9999876
No 129
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=8.1e-18 Score=104.03 Aligned_cols=73 Identities=23% Similarity=0.429 Sum_probs=66.8
Q ss_pred CEEEEEeCCCCEEEEEEcCC-----CcHHHHHHHHHhHhCCCCCceEEEEcceEeec-Cccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~-----~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d-~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|+|+|+. .|+.+.++++++ +||.+||++|++.+|+|+++|+|+|.|+.|.| +.+|++|++++|++|+++.+..
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 6899998 578899999995 99999999999999999999999999999988 5689999999999999987654
No 130
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=4.2e-18 Score=108.12 Aligned_cols=74 Identities=28% Similarity=0.401 Sum_probs=68.5
Q ss_pred CEEEEEeCCC---CEEEEEEcC---------CCcHHHHHHHHHhHh--CCCCCc-eEEEEcceEeecCcccccccccccc
Q 031706 1 MQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (154)
Q Consensus 1 m~v~v~~~~g---~~~~~~v~~---------~~tV~~lK~~i~~~~--~i~~~~-q~L~~~g~~L~d~~~L~~~~i~~~~ 65 (154)
|+|+||..++ +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|++++|+
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 6899999998 789999554 599999999999999 999999 9999999999999999999999999
Q ss_pred ceeeeeeee
Q 031706 66 TLHLVLRLR 74 (154)
Q Consensus 66 ~i~l~~~~~ 74 (154)
+|+++.+..
T Consensus 93 ~i~lv~~~~ 101 (107)
T 1x1m_A 93 TVHVLRKSW 101 (107)
T ss_dssp EEEEEESSC
T ss_pred EEEEEeCCC
Confidence 999988764
No 131
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=6.1e-18 Score=105.17 Aligned_cols=72 Identities=26% Similarity=0.389 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecC-ccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.. +++|+|+|+|+.|+|+ .+|++|++.+|++||++.+.+.
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 7899999999999999999999999999999987 8999999999999999 9999999999999999987653
No 132
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.73 E-value=2.4e-17 Score=103.21 Aligned_cols=72 Identities=22% Similarity=0.311 Sum_probs=66.1
Q ss_pred eeeEEeecCC--ceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCC-CCCCEEEEEEe
Q 031706 77 TMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNI-EGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g--~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i-~~~~~i~l~~~ 148 (154)
|.++|+...+ .++++++.+++||++||++|++++|+|++.|||+++|+.++|+.+|.+||| ++|+++++++.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 5677777764 689999999999999999999999999999999999999999999999999 69999999874
No 133
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=3.3e-17 Score=99.79 Aligned_cols=70 Identities=24% Similarity=0.457 Sum_probs=64.9
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
..++..+|+.+.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|++|++|+++..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 3455668999999999999999999999999999999999999999999999999999999999998764
No 134
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.3e-17 Score=102.24 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=62.0
Q ss_pred CEEEEEeCCCC--EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc--ce---Ee-ecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~--~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~--g~---~L-~d~~~L~~~~i~~~~~i~l~ 70 (154)
++|+|+..++. .+++++++++||.+||++|+..+|+|++.|+|+|. |+ .| +|+.+|++|++.+|++|+++
T Consensus 16 v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 16 IKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp EEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 36788876664 78999999999999999999999999999999998 44 34 88999999999999999886
No 135
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=104.21 Aligned_cols=73 Identities=19% Similarity=0.284 Sum_probs=66.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE--cceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|.++++.++|+.+++++++++||.+||++|++++||||++|+|++ .|+ |+|+.+|++|+|++|++++++....
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 556777789999999999999999999999999999999999986 555 8999999999999999999987754
No 136
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=4.7e-18 Score=105.63 Aligned_cols=71 Identities=20% Similarity=0.345 Sum_probs=64.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+ .+|+.+.+++++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|+++++++|+++...
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCSS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEecc
Confidence 578888 46889999999999999999999999999999999999999994 459999999999999988654
No 137
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-18 Score=103.10 Aligned_cols=69 Identities=23% Similarity=0.303 Sum_probs=63.3
Q ss_pred CEEEEEeCCCCEE--EE-EEcCCCcHHHHHHHHHhH-hCCCCCceEEEEc--ceEeecCccccccccccccceee
Q 031706 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQDK-EGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 1 m~v~v~~~~g~~~--~~-~v~~~~tV~~lK~~i~~~-~~i~~~~q~L~~~--g~~L~d~~~L~~~~i~~~~~i~l 69 (154)
|+|+|+++.|+.+ .+ ++++++||.+||++|++. .|+||++|+|+|. |+.|+|+.+|++|++.++++|++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 7899999988764 58 999999999999999995 8999999999976 89999999999999999999865
No 138
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=103.72 Aligned_cols=72 Identities=24% Similarity=0.348 Sum_probs=64.5
Q ss_pred cceeeEEeecCCc--eEEEeeCCcchHHHHHHHHhhh-cCCC-CcceEEEECCeecCCCCccccc--CCCCCCEEEEE
Q 031706 75 GGTMIKVKTLTGK--EIEIDIEPTDTIERIKERVEEK-EGIP-PVQQRLIYAGKQLADDKTARDY--NIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~g~--~~~~~v~~~~tV~~LK~~i~~~-~gi~-~~~q~l~~~g~~L~d~~~L~~~--~i~~~~~i~l~ 146 (154)
+.|.|+|+.++++ ++.+++++++||++||++|++. .|.| +++|+|+|+|+.|+|+.+|++| +|+++++|+|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 4588999999888 6789999999999999999986 4665 5999999999999999999999 99999999874
No 139
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.70 E-value=2.2e-17 Score=100.53 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=62.9
Q ss_pred EEEEEeC--CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE-------cceEeecCccccccccccccceeeeee
Q 031706 2 QIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~--~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-------~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
+|.|... +++.++.++++++||.+||++|+..+|+||+.|+|+| .|+.++|+.+|++|||++|++||++-+
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 4555533 4467889999999999999999999999999999997 478899999999999999999999865
Q ss_pred e
Q 031706 73 L 73 (154)
Q Consensus 73 ~ 73 (154)
.
T Consensus 84 ~ 84 (86)
T 4b6w_A 84 Q 84 (86)
T ss_dssp C
T ss_pred C
Confidence 4
No 140
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.70 E-value=4.7e-17 Score=100.15 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=68.1
Q ss_pred ceeeEEeecCCceEEE-eeCCcchHHHHHHHHhhhcCCCCcceEEE---ECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 76 GTMIKVKTLTGKEIEI-DIEPTDTIERIKERVEEKEGIPPVQQRLI---YAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~-~v~~~~tV~~LK~~i~~~~gi~~~~q~l~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
.|.++|+. .|+++.+ ++++++||.+||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+...
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 47888886 7889999 99999999999999999999999999999 99999999999999999999999998653
No 141
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.70 E-value=9.9e-19 Score=120.18 Aligned_cols=72 Identities=21% Similarity=0.292 Sum_probs=0.6
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
|.|+|++++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|+ ++++|+|++|++||+
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 678999999999999999999999999999999999999999999999999999998 999999999999996
No 142
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=8e-17 Score=100.10 Aligned_cols=75 Identities=28% Similarity=0.404 Sum_probs=69.8
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCC-CcccccCCCCCCEEEEEEeecCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADD-KTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..|.|+|+..+|+.+.++|++++||.+||++|++.+ +++|+|+|+|+.|+|+ .+|++|+|++|++|+++++.++.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 458899999999999999999999999999999987 8999999999999999 99999999999999999987653
No 143
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=7e-17 Score=102.44 Aligned_cols=76 Identities=25% Similarity=0.361 Sum_probs=69.1
Q ss_pred cceeeEEeecCC---ceEEEeeCC---------cchHHHHHHHHhhhc--CCCCcc-eEEEECCeecCCCCcccccCCCC
Q 031706 75 GGTMIKVKTLTG---KEIEIDIEP---------TDTIERIKERVEEKE--GIPPVQ-QRLIYAGKQLADDKTARDYNIEG 139 (154)
Q Consensus 75 ~~~~i~v~~~~g---~~~~~~v~~---------~~tV~~LK~~i~~~~--gi~~~~-q~l~~~g~~L~d~~~L~~~~i~~ 139 (154)
..|.|.|+..++ +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|+|++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 347899999888 788899554 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEeec
Q 031706 140 GSVLHLVLALR 150 (154)
Q Consensus 140 ~~~i~l~~~~~ 150 (154)
+++|+++.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998764
No 144
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.69 E-value=7.4e-17 Score=118.82 Aligned_cols=73 Identities=96% Similarity=1.295 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|+..+|+.+.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998875
No 145
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=5.8e-17 Score=100.84 Aligned_cols=72 Identities=17% Similarity=0.323 Sum_probs=66.2
Q ss_pred ceeeEEeecCCceE-EEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 76 GTMIKVKTLTGKEI-EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 76 ~~~i~v~~~~g~~~-~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
.|.+.|+. .|+++ .+++++++||.+||++|++.+|+|+++|+|+|+|+.|+|+ +|++|+|+++++|+|+...
T Consensus 7 ~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 7 GYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 37788885 78899 6999999999999999999999999999999999999999 9999999999999987653
No 146
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.68 E-value=2.2e-16 Score=116.27 Aligned_cols=78 Identities=60% Similarity=0.952 Sum_probs=72.1
Q ss_pred eecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 73 LRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 73 ~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
..+.|.|.|+..+|+++.+++++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++++|+|
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 356799999999999999999999999999999999999999999999999999999999999999999999999986
No 147
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.68 E-value=2.7e-18 Score=118.04 Aligned_cols=72 Identities=29% Similarity=0.410 Sum_probs=0.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecce
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (154)
|+|+|++++|++++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+.+|+ ++++|+|++++.++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 899999999999999999999999999999999999999999999999999999998 899999999988764
No 148
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=100.23 Aligned_cols=73 Identities=21% Similarity=0.343 Sum_probs=66.9
Q ss_pred eeeEEe-ecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 77 TMIKVK-TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~-~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
+.+.|+ ...++.+.++++++.||++||++++...++|++.|+|+|+|+.|.|+.||.+|||++|.+|||.++.
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 445555 4567889999999999999999999999999999999999999999999999999999999999875
No 149
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.68 E-value=1.2e-16 Score=99.31 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=62.1
Q ss_pred EEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc---eE----eecCccccccccccccceeeeee
Q 031706 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
.|+|+.... ..+++++++++||.+||++|+..+|+||+.|+|+|.| +. ++|+.+|++|++.+|++|+++-.
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 567776544 4789999999999999999999999999999999988 33 48899999999999999998753
No 150
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.67 E-value=2.2e-16 Score=96.15 Aligned_cols=66 Identities=29% Similarity=0.260 Sum_probs=59.9
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEEC-------CeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA-------GKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~-------g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
..+.+...+++++||.+||++|+..+|+|+++|+|+|. |+.++|+++|++|+|++|++|||+-+-|
T Consensus 13 ~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 13 RMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp SCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred CCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 45667899999999999999999999999999999974 7789999999999999999999987644
No 151
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=3.4e-16 Score=96.77 Aligned_cols=78 Identities=17% Similarity=0.344 Sum_probs=75.0
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.|.|.|+..+|+.+.+.|.+++++..|+++++++.|+|+++++|+|.|+.|.++.|+++|+++++++|+++++++||.
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 477888988999999999999999999999999999999999999999999999999999999999999999999995
No 152
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=2.9e-16 Score=96.97 Aligned_cols=74 Identities=22% Similarity=0.432 Sum_probs=66.9
Q ss_pred ceeeEEeecCCceEEEeeCCc-----chHHHHHHHHhhhcCCCCcceEEEECCeecCC-CCcccccCCCCCCEEEEEEee
Q 031706 76 GTMIKVKTLTGKEIEIDIEPT-----DTIERIKERVEEKEGIPPVQQRLIYAGKQLAD-DKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~-----~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d-~~~L~~~~i~~~~~i~l~~~~ 149 (154)
.|.|.|+. .++.+.++++++ +||.+||++|++.+|+|+++|+|+|+|+.|.| +.+|++|+|+++++|+++.+.
T Consensus 7 ~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 7 GLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp SEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred eEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 47888888 578889999985 99999999999999999999999999999998 668999999999999998764
Q ss_pred c
Q 031706 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 86 ~ 86 (92)
T 1wxv_A 86 N 86 (92)
T ss_dssp S
T ss_pred C
Confidence 3
No 153
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.66 E-value=2.9e-16 Score=101.77 Aligned_cols=73 Identities=14% Similarity=0.223 Sum_probs=63.2
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc---eE----eecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
|.|+|+..++. .+++++++++||.+||++|+..+|+|+++|+|+|.| +. ++|+.+|++||+.+|++||+...
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 35778776553 688999999999999999999999999999999987 42 47889999999999999998864
Q ss_pred e
Q 031706 73 L 73 (154)
Q Consensus 73 ~ 73 (154)
.
T Consensus 87 ~ 87 (122)
T 1t0y_A 87 T 87 (122)
T ss_dssp T
T ss_pred C
Confidence 3
No 154
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=99.37 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=66.0
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEE-CCeecCCCCcccccCCCCCCEEEEEEeec
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-AGKQLADDKTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~-~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 150 (154)
+|.+++....|+++.+++++++||++||++|++++||||++|+|++ .+..|+|+.+|++|+|++|++|+++++-.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCCCCCEEEEEecCC
Confidence 4666777779999999999999999999999999999999999985 44449999999999999999999977643
No 155
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.65 E-value=5.3e-16 Score=96.10 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=62.2
Q ss_pred ceeeEEeecCC--ceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEEC--Ce---ec-CCCCcccccCCCCCCEEEEEE
Q 031706 76 GTMIKVKTLTG--KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA--GK---QL-ADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 76 ~~~i~v~~~~g--~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~--g~---~L-~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.+.+.|+...+ ..+.+++++++||++||++|+..+|+|+++|+|+|. |+ .| +|+++|++|+|++|++|+|+-
T Consensus 15 ~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 15 FIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 35666766554 478899999999999999999999999999999987 45 44 899999999999999999863
No 156
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.65 E-value=9.9e-17 Score=101.71 Aligned_cols=72 Identities=21% Similarity=0.252 Sum_probs=65.8
Q ss_pred CEEEEEeCCCCEEEEEEc-CCCcHHHHHHHHHhHhCCCCCceEEEEcce-----------E----eecCccccccccccc
Q 031706 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-----------~----L~d~~~L~~~~i~~~ 64 (154)
|.|+|++.+|.. .++++ +++||.+||++|++.+++|+++|+|+|.++ . ++|+.+|++||+++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999965 79999 999999999999999999999999998887 3 578899999999999
Q ss_pred cceeeeeee
Q 031706 65 STLHLVLRL 73 (154)
Q Consensus 65 ~~i~l~~~~ 73 (154)
++||+....
T Consensus 87 ~~L~l~~~~ 95 (107)
T 1wf9_A 87 SMVYLAYEG 95 (107)
T ss_dssp CEEECCCSS
T ss_pred CEEEEEeCC
Confidence 999988764
No 157
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=5.9e-16 Score=95.70 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=73.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+..+|+.+.++|.+++++..|+++++++.|+|++.++|+|+|+.|+++.|+++|++.+|++|++..++.++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999998876
No 158
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=4.2e-16 Score=96.78 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=62.7
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc---eE----eecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
+.|+|+..+.. .+++++++++||.+||++|+..+|+|+++|+|+|.| +. ++|+.+|++|++.+|++||+...
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 35778776553 688999999999999999999999999999999986 43 58999999999999999988754
No 159
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.65 E-value=2.3e-16 Score=119.21 Aligned_cols=75 Identities=31% Similarity=0.561 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHh---HhCCCCCceEEEEcceEeecCccccccccccccce-eeeeeeec
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~---~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i-~l~~~~~~ 75 (154)
|+|+||..+|+.+.++|++++||.+||++|+. +.|+|+++|+|+|+|+.|+|+.+|++|+|++|++| +++.+..+
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999999999999999999999999999999 57799999999999999999999999999999999 66665543
No 160
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=1.8e-16 Score=98.41 Aligned_cols=72 Identities=21% Similarity=0.380 Sum_probs=64.9
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
.|.++|+. .++++.+++++++||.+||++|++.+|+|+++|+|+|+|+.|+| .+|++|+|+++++|+|+...
T Consensus 17 ~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 17 LVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred eEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 36777874 68899999999999999999999999999999999999999954 59999999999999997654
No 161
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.1e-16 Score=95.37 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=63.2
Q ss_pred ceeeEEeecCCceE--EE-eeCCcchHHHHHHHHhh-hcCCCCcceEEEEC--CeecCCCCcccccCCCCCCEEEE
Q 031706 76 GTMIKVKTLTGKEI--EI-DIEPTDTIERIKERVEE-KEGIPPVQQRLIYA--GKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 76 ~~~i~v~~~~g~~~--~~-~v~~~~tV~~LK~~i~~-~~gi~~~~q~l~~~--g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
.|.|+|++..|+.. .+ ++++++||.+||++|++ ..|+|+++|+|+|. |+.|+|+.+|++|+|+++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 38899999987664 58 89999999999999999 48999999999976 89999999999999999999875
No 162
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.63 E-value=6.4e-16 Score=116.72 Aligned_cols=79 Identities=35% Similarity=0.653 Sum_probs=73.5
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhh---hcCCCCcceEEEECCeecCCCCcccccCCCCCCEE-EEEEeec
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEE---KEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVL-HLVLALR 150 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~---~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i-~l~~~~~ 150 (154)
..|.|+|+..+|+++.++|++++||.+||++|+. +.|+|+++|+|+|+|+.|+|+++|.+|+|+++++| +++.+.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4588999999999999999999999999999999 67899999999999999999999999999999998 8888888
Q ss_pred CCC
Q 031706 151 GGN 153 (154)
Q Consensus 151 gg~ 153 (154)
+|.
T Consensus 86 ~~~ 88 (368)
T 1oqy_A 86 AGQ 88 (368)
T ss_dssp SSS
T ss_pred CCC
Confidence 874
No 163
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=3e-15 Score=91.93 Aligned_cols=78 Identities=17% Similarity=0.344 Sum_probs=75.0
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.+.|.|+..+|+.+.+.|.+++++..|++..+++.|+|++.++|+|.|+.|.++.|.++|++++|++|+++..++||.
T Consensus 5 ~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 477888888999999999999999999999999999999999999999999999999999999999999999999996
No 164
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.4e-15 Score=94.51 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=61.3
Q ss_pred eeeEEeecC--CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe---e----cCCCCcccccCCCCCCEEEEEE
Q 031706 77 TMIKVKTLT--GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK---Q----LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~--g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~---~----L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
+.+.|+... +..+.+++++++||++||++|+..+|+|+++|+|+|.|+ . ++|+++|++|+|++|++|+++-
T Consensus 15 v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 15 VHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 445555533 357889999999999999999999999999999999873 3 4899999999999999999875
Q ss_pred e
Q 031706 148 A 148 (154)
Q Consensus 148 ~ 148 (154)
.
T Consensus 95 ~ 95 (97)
T 2kj6_A 95 L 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=3.9e-15 Score=91.42 Aligned_cols=79 Identities=16% Similarity=0.399 Sum_probs=74.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMI 79 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i 79 (154)
|+|.|++.+|+.+.++|.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+++|++.+|++|++...+.+|-.+
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~~~ 84 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVYL 84 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCccc
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999988876443
No 166
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.59 E-value=7.9e-15 Score=90.51 Aligned_cols=77 Identities=17% Similarity=0.358 Sum_probs=70.9
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
.+.|.|+..+|+.+.+.|.+++++..|+...+++.|++++.++|+|.|+.|.++.|..+|++.+|++|+++++++||
T Consensus 17 ~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 17 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred eEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999998
No 167
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.59 E-value=1.4e-15 Score=92.72 Aligned_cols=72 Identities=24% Similarity=0.328 Sum_probs=63.6
Q ss_pred CEEEEEeCCCCEEEEE-EcCCCcHHHHHHHHHhHhCCCCCceEEEEcc--eEee---cCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE---DGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~-v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g--~~L~---d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|++.+|+. .++ +++++||.+||++|++.+|+|+++|+|+|++ +.++ |+.+|++||+.+|++|++....
T Consensus 1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 899999999954 577 9999999999999999999999999999873 6764 6789999999999999887553
No 168
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.58 E-value=1.1e-14 Score=85.75 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
|+|.|++.+|+.+.+++.+++++..|+++++++.|+|++.++|+|+|+.|.++.|+++|++.+|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5789999999999999999999999999999999999999999999999999999999999999999875
No 169
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=7.1e-15 Score=91.21 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=61.0
Q ss_pred eeeEEeecCCc-eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECC---ee----cCCCCcccccCCCCCCEEEEEE
Q 031706 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG---KQ----LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~g~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g---~~----L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
+.+.|+..... .+.+++++++||++||++|+..+|+|+++|+|+|.| +. ++|+++|++|+|++|++|++..
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 45666664443 688999999999999999999999999999999976 43 5899999999999999999875
No 170
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.57 E-value=1.2e-14 Score=89.62 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|.|.|+..+|+.+.+.|.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++..++.||
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 5688898899999999999999999999999999999999999999999999999999999999999999887654
No 171
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=1.2e-14 Score=91.25 Aligned_cols=79 Identities=15% Similarity=0.320 Sum_probs=75.1
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
..+.|.|+..+|+.+.+.|.+++++..|+...+++.|++++.++|+|.|+.|.++.|..+|+++++++|++++.++||.
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 3477888888999999999999999999999999999999999999999999999999999999999999999999996
No 172
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.55 E-value=6.5e-15 Score=93.30 Aligned_cols=71 Identities=23% Similarity=0.384 Sum_probs=64.7
Q ss_pred eeeEEeecCCceEEEeeC-CcchHHHHHHHHhhhcCCCCcceEEEECCe-----------e----cCCCCcccccCCCCC
Q 031706 77 TMIKVKTLTGKEIEIDIE-PTDTIERIKERVEEKEGIPPVQQRLIYAGK-----------Q----LADDKTARDYNIEGG 140 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~-~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~-----------~----L~d~~~L~~~~i~~~ 140 (154)
|.|.|++.+|+. .++++ +++||.+||++|++.+++|+++|+|++.++ . ++|+.+|++|+|++|
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999966 78999 999999999999999999999999998887 4 589999999999999
Q ss_pred CEEEEEEe
Q 031706 141 SVLHLVLA 148 (154)
Q Consensus 141 ~~i~l~~~ 148 (154)
++|||...
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998754
No 173
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.54 E-value=3.1e-14 Score=89.47 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=70.8
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..+.|.|+. +|+.+.+.|..++++..|++..+++.|++++.++|+|.|+.|.++.|.++|++++|++|++++.++||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 347788888 99999999999999999999999999999999999999999999999999999999999999999998
No 174
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.54 E-value=3.1e-14 Score=92.21 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=61.9
Q ss_pred eeeEEeecCCc-eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECC---e---e-cCCCCcccccCCCCCCEEEEEEe
Q 031706 77 TMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG---K---Q-LADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g---~---~-L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
+.+.|+...+. .+.+++++++||++||++|+..+|+|+++|+|+|.| + . ++|+.+|++|+|++|++|||+..
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 55666665443 688999999999999999999999999999999977 3 2 47999999999999999999864
No 175
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=2e-14 Score=90.22 Aligned_cols=76 Identities=16% Similarity=0.376 Sum_probs=72.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|.|+..+|+.+.+.|.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++...+.++
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999888765
No 176
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.53 E-value=8.6e-15 Score=109.02 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=66.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE---EcceEeecCccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|+|+|+. +|+.+++++++++||++||++|++.+|+||++|+|+ |.|+.|.|+.+|++|+|++|++|+++.....
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 5788885 789999999999999999999999999999999999 8999999999999999999999999876554
No 177
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.52 E-value=2.1e-14 Score=90.87 Aligned_cols=78 Identities=15% Similarity=0.396 Sum_probs=73.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeeccee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 78 (154)
|+|.|+..+|+.+.++|.+++++..|+++++++.|+|++.++|+|.|+.|.++.|+++|++.+|++|++...+.+++.
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~~ 104 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGLE 104 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC--
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCccc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999887753
No 178
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.51 E-value=5.9e-14 Score=88.19 Aligned_cols=75 Identities=13% Similarity=0.339 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|.|+. +|+.+.++|.+++++..|+++++++.|++++.++|+|+|+.|.++.|.++|++.+|++|++..++.||
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 5788898 99999999999999999999999999999999999999999999999999999999999999887653
No 179
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.51 E-value=7.7e-14 Score=83.54 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=66.7
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
|+|.|+..+|+ .+.+.|.+++++..|+++++++.|++++.++|+|+|+.|.++.|+++|++.+|++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 57899999996 89999999999999999999999999999999999999999999999999999999874
No 180
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.51 E-value=3e-14 Score=90.17 Aligned_cols=79 Identities=20% Similarity=0.405 Sum_probs=74.7
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
..+.|.|+..+|+.+.+.|.+++++..|+...+++.|++++.++|+|.|+.|.++.|.++|+++++++|++++.++||-
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 4478888888999999999999999999999999999999999999999999999999999999999999999999983
No 181
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.48 E-value=6.2e-14 Score=85.39 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=61.8
Q ss_pred eeeEEeecCCceEEEe-eCCcchHHHHHHHHhhhcCCCCcceEEEEC--CeecC---CCCcccccCCCCCCEEEEEEe
Q 031706 77 TMIKVKTLTGKEIEID-IEPTDTIERIKERVEEKEGIPPVQQRLIYA--GKQLA---DDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~-v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~--g~~L~---d~~~L~~~~i~~~~~i~l~~~ 148 (154)
|.+.|+..+|+.. +. +++++||.+||+.|++.+|+|+++|+|+|+ ++.+. |+.+|++|||.+|++|++...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 5788999999654 77 999999999999999999999999999976 47774 789999999999999987543
No 182
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.48 E-value=2.3e-13 Score=80.06 Aligned_cols=70 Identities=16% Similarity=0.355 Sum_probs=67.1
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
+.+.|+..+|+.+.+.+.+++++..|++..+++.|+|++.++|+|.|+.|.++.|.++|++++|++|+++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5678888899999999999999999999999999999999999999999999999999999999999986
No 183
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.45 E-value=1.3e-13 Score=102.67 Aligned_cols=72 Identities=28% Similarity=0.448 Sum_probs=64.9
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE---ECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI---YAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~---~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
+.+.|+. +|+++.+++++++||++||++|++.+|+|+++|+|+ |+|+.|+|+.+|++|+|++|++|+|+...
T Consensus 6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~ 80 (320)
T 3shq_A 6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGST 80 (320)
T ss_dssp EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccc
Confidence 5677885 789999999999999999999999999999999999 89999999999999999999999988653
No 184
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=3.7e-13 Score=83.72 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=61.4
Q ss_pred EEEEEe---CCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc-------eEe-ecCccccccccccccceeee
Q 031706 2 QIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~---~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-------~~L-~d~~~L~~~~i~~~~~i~l~ 70 (154)
+|+|+. .+|..+...+++++||++||.+|++.+|+|++.|+|.|.+ ..| +|..+|++|++.+|++|++.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 466665 4678899999999999999999999999999999999873 224 56779999999999999987
Q ss_pred eee
Q 031706 71 LRL 73 (154)
Q Consensus 71 ~~~ 73 (154)
...
T Consensus 91 d~~ 93 (97)
T 1wjn_A 91 WSG 93 (97)
T ss_dssp CCS
T ss_pred ecC
Confidence 643
No 185
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.42 E-value=1.4e-12 Score=78.00 Aligned_cols=72 Identities=17% Similarity=0.373 Sum_probs=67.6
Q ss_pred cceeeEEeecCCc-eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 031706 75 GGTMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~g~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
..+.|.|+..+|+ .+.+.|.+++++..|++..+++.|++++.++|+|.|+.|.++.|.++|++++|++|+++
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3477888888996 89999999999999999999999999999999999999999999999999999999986
No 186
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.34 E-value=5.2e-12 Score=78.45 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=61.3
Q ss_pred eeeEEee---cCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECC-------eec-CCCCcccccCCCCCCEEEE
Q 031706 77 TMIKVKT---LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG-------KQL-ADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 77 ~~i~v~~---~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g-------~~L-~d~~~L~~~~i~~~~~i~l 145 (154)
+.+.|+. .+++.+...++.+.||++||.+|++.+|+|+..|+|.|.+ ..| +|..+|++|++.+|++|+|
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 3444443 3677888999999999999999999999999999999763 124 6899999999999999999
Q ss_pred EEeec
Q 031706 146 VLALR 150 (154)
Q Consensus 146 ~~~~~ 150 (154)
...-+
T Consensus 90 ~d~~p 94 (97)
T 1wjn_A 90 RWSGP 94 (97)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 87543
No 187
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=1.4e-11 Score=78.18 Aligned_cols=74 Identities=16% Similarity=0.392 Sum_probs=69.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
++|.|+..+|....+.|.+++++..|+++..++.|++++.++|+|+|+.|.++.|.+++++.+|++|.+.....
T Consensus 41 I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~ 114 (115)
T 3kyd_D 41 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQC 114 (115)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeecc
Confidence 46788888899999999999999999999999999999999999999999999999999999999999987653
No 188
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.24 E-value=6.6e-11 Score=75.02 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=70.8
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
.+.|.|+..+|..+.+.|..++++..|+...+++.|+++..++|+|.|+.|.++.|..++++.+|++|+++....|
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 3567777888998999999999999999999999999999999999999999999999999999999999998765
No 189
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.20 E-value=8.6e-11 Score=81.48 Aligned_cols=77 Identities=23% Similarity=0.398 Sum_probs=71.9
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
-+.+.|+. +|+.+.+.|.+++++..|+...+++.|+++..+||+|.|+.+.++.|..++++.+|++|+++..+.||.
T Consensus 29 ~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 29 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred eEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 35666764 888999999999999999999999999999999999999999999999999999999999999999994
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.17 E-value=7e-11 Score=80.60 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=71.9
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
.+.|.|+. +|..+.+.|.+++++..|++..+++.|+++..++|+|.|+.|.++.|..++++.+|++|+++..+.||.
T Consensus 57 ~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 57 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred cEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35666753 888999999999999999999999999999999999999999999999999999999999999999995
No 191
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.14 E-value=1.5e-10 Score=80.23 Aligned_cols=75 Identities=13% Similarity=0.321 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
++|.|+ .+|....+.|.+++++..|+++..++.|+|++.++++|+|+.+.++.|.+++++.+|++|++...+.++
T Consensus 30 I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 30 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp EEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred EEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 367786 488999999999999999999999999999999999999999999999999999999999999988654
No 192
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.3e-10 Score=79.36 Aligned_cols=76 Identities=12% Similarity=0.291 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecce
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~ 77 (154)
+.|.|+ .+|..+.+.|.+++++..|+++..++.|++++.++++|+|+.|.++.|.+++++.+|++|++...+.++.
T Consensus 58 InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 58 INLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred EEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 357776 4889999999999999999999999999999999999999999999999999999999999999998774
No 193
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.08 E-value=1.1e-09 Score=63.67 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=64.4
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC-ceEEEEcceEeecCccccccccccccceeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
.+.+++.....+.+.+.++++|.+|-.+...+.|||++ ..+|.|.|..|+++.++.+|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45667777778999999999999999999999999999 89999999999999999999999999998764
No 194
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=99.06 E-value=6.9e-11 Score=70.70 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=58.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceE---e--ecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~---L--~d~~~L~~~~i~~~~~i~l~ 70 (154)
|.|.|++.+| .+.+++++++|+.+|+++|++.++++++.|.+.++..+ | .++.+|+++|+++|+.|++.
T Consensus 5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 6788999887 67889999999999999999999999999888765433 3 36779999999999999764
No 195
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.00 E-value=4e-11 Score=82.88 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=1.6
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
...|.+.| ..+|+.+.+.|.+++++..|++..+++.|++++.+++.|.|+.+.++.|.+++++++|++|+++..++||.
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 34466777 56888899999999999999999999999999999999999999999999999999999999999999996
No 196
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.98 E-value=4.5e-11 Score=82.61 Aligned_cols=78 Identities=13% Similarity=0.319 Sum_probs=2.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMI 79 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i 79 (154)
|.|.| ..+|+...++|.+++++..|+++..++.|++++.++++|+|+.+.++.|.+++++.+|++|++.....||..+
T Consensus 22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~~ 99 (227)
T 3v7o_A 22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLTL 99 (227)
T ss_dssp ---------------------------------------------------------------------------CCCH
T ss_pred EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCchH
Confidence 56777 6688889999999999999999999999999999999999999999999999999999999999999887543
No 197
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.97 E-value=7e-08 Score=73.26 Aligned_cols=143 Identities=20% Similarity=0.268 Sum_probs=111.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhC----CCCCceEEEE------cceEeecCccccccccccccceeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~----i~~~~q~L~~------~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
.+.|... +.+.++.+++++||.+....|.++.. .++++--|+. .|..|++.++|..|++.+|+.+....
T Consensus 5 ~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~ 83 (371)
T 3ivf_A 5 SLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK 83 (371)
T ss_dssp EEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC
Confidence 3455554 67789999999999999999977763 3577778888 46789999999999999999887765
Q ss_pred eeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCC-CcceEEEECC---------eecCCCCcccccCCCCCC
Q 031706 72 RLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIYAG---------KQLADDKTARDYNIEGGS 141 (154)
Q Consensus 72 ~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~-~~~q~l~~~g---------~~L~d~~~L~~~~i~~~~ 141 (154)
+. +.+.|..++|....+.++++.|+.++-..|+++.|+. .+..-|.+.. .-|+.++++.+.+.....
T Consensus 84 ~~---~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~ 160 (371)
T 3ivf_A 84 KQ---RPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHE 160 (371)
T ss_dssp CE---EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTC
T ss_pred ce---eEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCc
Confidence 54 5788999999999999999999999999999999984 4445555422 234556777777776666
Q ss_pred EEEEEEe
Q 031706 142 VLHLVLA 148 (154)
Q Consensus 142 ~i~l~~~ 148 (154)
++++.++
T Consensus 161 ~l~frvK 167 (371)
T 3ivf_A 161 TLLLRRK 167 (371)
T ss_dssp EEEEEEC
T ss_pred eEEEEEE
Confidence 7665443
No 198
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.96 E-value=9.4e-09 Score=59.79 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=64.3
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCc-ceEEEECCeecCCCCcccccCCCCCCEEEEEE
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLIYAGKQLADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
.+..++.....+.+.++++.+|..|-+.-+.+.|||++ ..+|.|.|..|..+.++++|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45566667778999999999999999999999999999 89999999999999999999999999999875
No 199
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.88 E-value=1.6e-09 Score=64.71 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=57.8
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe---ec--CCCCcccccCCCCCCEEEEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK---QL--ADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~---~L--~d~~~L~~~~i~~~~~i~l~ 146 (154)
.|.+.+++.+| ++.+++++++|+.+|+++|++.++++++.+.+.+... .+ .++.+|+++|++.|+.|++.
T Consensus 4 ~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 4 SIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred cEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 47788888887 6678899999999999999999999988877764433 23 37889999999999999863
No 200
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.83 E-value=2.1e-08 Score=61.79 Aligned_cols=70 Identities=13% Similarity=0.295 Sum_probs=64.4
Q ss_pred CEEEEEeCCCC-EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeee
Q 031706 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 1 m~v~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~ 70 (154)
+.|.|+..+|. .+.+.+.+++++..|..+..++.|++++..+++|.|..+.++.|.+++++.+|++|.+.
T Consensus 26 I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 26 LQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35778888884 78999999999999999999999999999999999999999999999999999999764
No 201
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.70 E-value=1.1e-07 Score=57.88 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=46.6
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEee--cCccccccc
Q 031706 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYN 60 (154)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~--d~~~L~~~~ 60 (154)
|+|-.. .+..+.+.+.+++||..+|++|++++|||++.|+|+|.|+.+. .......|.
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSC
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCC
Confidence 444444 4577899999999999999999999999999999999997654 444555554
No 202
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.67 E-value=1.4e-07 Score=58.05 Aligned_cols=71 Identities=14% Similarity=0.353 Sum_probs=64.9
Q ss_pred ceeeEEeecCCc-eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEE
Q 031706 76 GTMIKVKTLTGK-EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 76 ~~~i~v~~~~g~-~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
.+.|.|+..+|. .+.+.+..+++...|....+++.|++++..++.|.|..+..+.|..++++.+|++|.++
T Consensus 25 ~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 25 QLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 356677777884 78899999999999999999999999999999999999999999999999999999885
No 203
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.66 E-value=9.3e-08 Score=67.10 Aligned_cols=79 Identities=23% Similarity=0.387 Sum_probs=71.7
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
...+.+.|+. +++.+.+.+..+++...|++..|++.|++++.++++|.|+.+.++.+..+....++++|+++..+.||.
T Consensus 19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 3345666665 677888999999999999999999999999999999999999999999999999999999999999984
No 204
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.63 E-value=3.4e-09 Score=79.36 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=1.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeeccee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTM 78 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~ 78 (154)
+.|.|+. +|+...++|..++++..|+++..++.|++++.++++|+|+.+.++.|.+++++.+|++|++...+.++|.
T Consensus 22 I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 22 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMR 98 (360)
T ss_dssp ----------------------------------------------------------------------------CH
T ss_pred EEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHH
Confidence 3566776 6778899999999999999999999999999999999999999999999999999999999999888764
No 205
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.63 E-value=2.1e-07 Score=56.00 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=68.1
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
.++|.+.|-..+++...+.+.++.++.++-+..++++|+++++..|.|+++.++-+.++.-.|+.+|++++++-.
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 356788888889999999999999999999999999999999999999999999999999999999999998754
No 206
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.62 E-value=1.3e-07 Score=66.33 Aligned_cols=74 Identities=14% Similarity=0.332 Sum_probs=68.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
.|.|+. +|+...+++..++++..|+++.+++.|+|+++++++|.|+.+.++.+..++++.++++|.+.....++
T Consensus 23 ~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 23 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp EEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred EEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 466766 67788999999999999999999999999999999999999999999999999999999999887664
No 207
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.59 E-value=5.3e-09 Score=78.37 Aligned_cols=79 Identities=23% Similarity=0.373 Sum_probs=0.0
Q ss_pred eecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 73 LRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 73 ~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+..-+.+.|+. +|+.+.+.|..++++..|++..+++.|++++.+++.|.|+.+.++.|.+++++++|++|+++..+.||
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 33445666666 67788899999999999999999999999999999999999999999999999999999999999998
No 208
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.57 E-value=2.7e-07 Score=56.01 Aligned_cols=71 Identities=14% Similarity=0.294 Sum_probs=65.3
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
+.|.|+. +|....+.+..++....|.++..++.|++++..+++|.|..+.++.|.+++++.++++|.+...
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 3567774 7889999999999999999999999999999999999999999999999999999999988754
No 209
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.51 E-value=1.1e-06 Score=53.37 Aligned_cols=71 Identities=11% Similarity=0.339 Sum_probs=65.1
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
+.+.|+. +|....+.+..++....|....|++.|++++..++.|.|..+.++.|-++.+++++++|.+++-
T Consensus 22 IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence 5666664 6888999999999999999999999999999999999999999999999999999999998763
No 210
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.48 E-value=3.2e-07 Score=59.10 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=59.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC-------------------------------------ceEEE
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 44 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-------------------------------------~q~L~ 44 (154)
.+.|+.++|...++.|+.+.||++++..|.++.||+.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 37899999999999999999999999999999998854 34443
Q ss_pred E--cceEeecCccccccccccccceeeeee
Q 031706 45 F--AGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 45 ~--~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
. ...+|++..+|.++||.+++++.+..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 2 236889999999999999999866554
No 211
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.45 E-value=7.3e-07 Score=53.63 Aligned_cols=74 Identities=19% Similarity=0.204 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
|.|.|-..+++...+.+.|++++.++-+..-+++|+.+++-.|.|+++.++-...+.-.|+.+|+++.++....
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 67889999999999999999999999999999999999999999999999999999999999999998876543
No 212
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.44 E-value=9e-07 Score=53.91 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=51.7
Q ss_pred eEEeec-CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeec--CCCCcccccCC-CCCCEEEEEE
Q 031706 79 IKVKTL-TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQL--ADDKTARDYNI-EGGSVLHLVL 147 (154)
Q Consensus 79 i~v~~~-~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L--~d~~~L~~~~i-~~~~~i~l~~ 147 (154)
+.|-+. .+..+.+.+.+.+|+..+|++|++++|||+++|+|+|.|+.+ +.+..-..|.- ...+-|.++-
T Consensus 15 vHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 15 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp EEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred EEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 344333 567789999999999999999999999999999999999754 45555555543 3444555543
No 213
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.36 E-value=4.6e-08 Score=74.70 Aligned_cols=79 Identities=11% Similarity=0.297 Sum_probs=0.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeEE
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKV 81 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v 81 (154)
.|+|+. +|....+.|..+++...|+++..++.|++++.++++|+|+.+.++.|.+++++.+|++|.+...+.++..+.+
T Consensus 32 ~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~~~ 110 (389)
T 4da1_A 32 NLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLYF 110 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccccce
Confidence 456665 6677889999999999999999999999999999999999999999999999999999999998877655443
No 214
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=98.34 E-value=5.7e-08 Score=74.23 Aligned_cols=76 Identities=22% Similarity=0.403 Sum_probs=0.0
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
+.+.|+. ++....+.|..+++...|++..+++.|+++..+++.|+|+.+.++.|..++++.+|++|+++..+.||.
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 4455555 667788999999999999999999999999999999999999999999999999999999999999995
No 215
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.31 E-value=8.9e-07 Score=56.99 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=56.8
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCc-ceEEEE----------------------------------C
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLIY----------------------------------A 122 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~q~l~~----------------------------------~ 122 (154)
.+.|+.++|...++.|+.+.+|.+++..||.+.|++.. .+-|.. +
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999998643 233321 1
Q ss_pred ----CeecCCCCcccccCCCCCCEEEEEEe
Q 031706 123 ----GKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 123 ----g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
..-|+++.+|.++||.+++++.+..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 13457799999999999999766543
No 216
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.21 E-value=4.9e-06 Score=49.33 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=55.8
Q ss_pred EEEEEe--CCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC-----ceEEEEcceEeecCccccccccccccceee
Q 031706 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 2 ~v~v~~--~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-----~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l 69 (154)
.|++.. ..++.+.++++...||..|++.+.+..+++.. +.+..-.+..|.++..|++|++.+|+.+.+
T Consensus 6 ~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 6 DITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 455554 47899999999999999999999999987642 234445678899999999999999998865
No 217
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=98.01 E-value=1e-05 Score=47.88 Aligned_cols=63 Identities=11% Similarity=0.250 Sum_probs=53.6
Q ss_pred ecCCceEEEeeCCcchHHHHHHHHhhhcCCCCc-----ceEEEECCeecCCCCcccccCCCCCCEEEE
Q 031706 83 TLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-----QQRLIYAGKQLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 83 ~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-----~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l 145 (154)
...++.+.++++...||..|++.+.+..+++.. ..+..-++..|.++..|++|+|.+|+.|.+
T Consensus 13 ~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 13 HYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred ccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 457899999999999999999999999997542 234446778899999999999999999876
No 218
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.97 E-value=4.6e-05 Score=45.52 Aligned_cols=69 Identities=14% Similarity=0.307 Sum_probs=58.4
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeec---CCCCcccccCCCCCCEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQL---ADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L---~d~~~L~~~~i~~~~~i~l~ 146 (154)
..|.|+.++|+.+.-.+..++|+.+|..-|.. .+.++..+.|. |..+.+ +.+.+|.+.|+.+.++|.|-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 45778888999888889999999999999987 56778888888 667777 45789999999999988764
No 219
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.96 E-value=6.3e-05 Score=44.91 Aligned_cols=68 Identities=19% Similarity=0.369 Sum_probs=57.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEee---cCccccccccccccceeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~---d~~~L~~~~i~~~~~i~l~ 70 (154)
+|.|+.++|+.+.-.+..++||.+|.+.|.. .+.++....|. |-.+.+. .+.+|++.|+.+++++.+.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve 81 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE 81 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence 5889999999999999999999999999988 56777778887 3356673 4679999999999988764
No 220
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.67 E-value=0.00032 Score=43.96 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=59.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEee--c-Cccccccccccccceeeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d-~~~L~~~~i~~~~~i~l~~~ 72 (154)
+|.||.++|..+.-++..++||.+|.+.|....+.+.....|. |-.+.+. | +.+|++.|+.+.+++.+...
T Consensus 15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 5889999999999999999999999999999887776667776 4456675 3 56999999999988876654
No 221
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.67 E-value=0.00034 Score=43.82 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=60.2
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecC---CCCcccccCCCCCCEEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA---DDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~---d~~~L~~~~i~~~~~i~l~~ 147 (154)
..|.|+.++|..+.-.+..++|+.+|.+-|....+.+...+.|. |..+.+. .+++|.+.|+.+.+++.+.-
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~ 89 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLP 89 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEE
Confidence 56788889999999999999999999999998877777788887 6677775 37899999999988876654
No 222
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.63 E-value=0.00024 Score=45.54 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=60.1
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeec--C-CCCcccccCCCCCCEEEEEE
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQL--A-DDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L--~-d~~~L~~~~i~~~~~i~l~~ 147 (154)
....|.|+.++|..+.-.+..++||.+|..-|... +.++..+.|. |..+.+ . .+.+|.+.|+.+...|.|.-
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 34678889999999888999999999999999876 7777888887 677877 3 47899999999988876643
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.62 E-value=0.00039 Score=44.56 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=57.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEe--e-cCccccccccccccceeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L--~-d~~~L~~~~i~~~~~i~l~~ 71 (154)
+|.||.++|..+.-.+..++||.+|...|... +.++....|+ |-.+.+ . .+.+|.+.|+.+.+++.+..
T Consensus 45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 58899999999999999999999999999887 7777777777 446777 3 36799999999988886653
No 224
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.17 E-value=0.0017 Score=40.55 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=56.8
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE--ECCeecC--CCCcccccCCCCCCEEEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI--YAGKQLA--DDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~--~~g~~L~--d~~~L~~~~i~~~~~i~l~ 146 (154)
..|.|+.++|+.+.-.+..++||.+|..-|... +..+..+.|. |..+.+. .+.+|.+.|+.+..+|.|-
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 567788889998888899999999999999864 5566778886 6677775 5789999999999888664
No 225
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.99 E-value=0.0029 Score=39.47 Aligned_cols=70 Identities=19% Similarity=0.252 Sum_probs=55.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE--EcceEee--cCccccccccccccceeeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~--~~g~~L~--d~~~L~~~~i~~~~~i~l~~~ 72 (154)
+|.||.++|+.+.-.+..++||.+|...|... +..+....|. |-.+.+. .+.+|++.|+.+.+++.+...
T Consensus 25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~ 98 (109)
T 2cr5_A 25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK 98 (109)
T ss_dssp EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence 58899999999999999999999999999965 4555566666 3456665 467999999999988866543
No 226
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=96.97 E-value=0.0051 Score=48.75 Aligned_cols=119 Identities=13% Similarity=0.203 Sum_probs=76.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCC---CCceEEE--Ecce---EeecCccccccccccccceeeeeeee--------c
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------G 75 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~---~~~q~L~--~~g~---~L~d~~~L~~~~i~~~~~i~l~~~~~--------~ 75 (154)
.+.+.++.+.||+||-+.+.++.+++ ....+++ ++++ .+.++.+++..+-....++.+-.-+. +
T Consensus 353 ~~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~ 432 (530)
T 2ylm_A 353 EITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKEN 432 (530)
T ss_dssp EEEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCC
Confidence 46677889999999999999999987 3445654 5664 46677777655432233333322111 1
Q ss_pred ceeeEEee-------cCCceEEEeeCCcchHHHHHHHHhhhcCCCCc---ceE--EEECCe--ecCCCC
Q 031706 76 GTMIKVKT-------LTGKEIEIDIEPTDTIERIKERVEEKEGIPPV---QQR--LIYAGK--QLADDK 130 (154)
Q Consensus 76 ~~~i~v~~-------~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~---~q~--l~~~g~--~L~d~~ 130 (154)
.+.|.|.. ..|..+.+.+.+.+|+.++|++|++++|++-. ..+ ++-.++ .++|+.
T Consensus 433 ~~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d 501 (530)
T 2ylm_A 433 EMLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDE 501 (530)
T ss_dssp EEEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTT
T ss_pred cEEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCcc
Confidence 12233322 23667788899999999999999999999744 334 343343 466543
No 227
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.88 E-value=0.0039 Score=40.00 Aligned_cols=68 Identities=18% Similarity=0.338 Sum_probs=54.9
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhc-CCCCcceEEE--ECCeecCC-CCcccccCCCCCCEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKE-GIPPVQQRLI--YAGKQLAD-DKTARDYNIEGGSVL 143 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~-gi~~~~q~l~--~~g~~L~d-~~~L~~~~i~~~~~i 143 (154)
...|.|+..+|..+.-.+..++||.+|..-|.... +.+...+.|. |..+.+.| +.+|.+.|+.+...+
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 36788899999999999999999999999998753 3556677777 66788864 789999999885443
No 228
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.87 E-value=0.0042 Score=35.97 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=49.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+|+........++++++.||.+|-+. .|+|++.-....||+....+. +.+|+++.+.--..++
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 89999977445566899999999998765 789998887778898876555 2348888776554444
No 229
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.82 E-value=0.0065 Score=35.80 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=57.6
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEE---CCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY---AGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~---~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
+.+.|+....+...+.|++..+.++|--.|+++..+.|++..|.. .+.+|+-+++|.+|||++ +|.+-.
T Consensus 11 vRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~ 82 (91)
T 2daj_A 11 VRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDV 82 (91)
T ss_dssp EEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEEC
T ss_pred EEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecc
Confidence 456666777788889999999999999999999999999999884 456788899999999987 555433
No 230
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=96.78 E-value=0.0035 Score=40.27 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=52.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHh-CCCCCceEEE--EcceEeec-Cccccccccccccce
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 67 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-~i~~~~q~L~--~~g~~L~d-~~~L~~~~i~~~~~i 67 (154)
+|.|+..+|..+.-.+..++||.+|.+.|.... +.+.....|. |-.+.++| +.+|.+.|+.+...+
T Consensus 54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 588999999999999999999999999998864 3445566776 34677765 579999999875544
No 231
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.74 E-value=0.011 Score=36.92 Aligned_cols=70 Identities=36% Similarity=0.449 Sum_probs=47.0
Q ss_pred EEEEEeCC--CCEEEEEEcCCCcHHHHHHHHHhHh--CCC------CCceEEEEc----ceEeecC-------------c
Q 031706 2 QIFVKTLT--GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GKQLEDG-------------R 54 (154)
Q Consensus 2 ~v~v~~~~--g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~~L~d~-------------~ 54 (154)
.+++-..+ +..+.+.|-..+||.++|++|-... |.| ++...|-|. |+.|.|. .
T Consensus 13 tl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLN 92 (111)
T 4e71_A 13 TVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVN 92 (111)
T ss_dssp EEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCC
T ss_pred EEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEec
Confidence 34444332 4568899999999999999997553 444 344556652 3556542 3
Q ss_pred cccccccccccceeeee
Q 031706 55 TLADYNIQKESTLHLVL 71 (154)
Q Consensus 55 ~L~~~~i~~~~~i~l~~ 71 (154)
||+.|++.+|+++.+..
T Consensus 93 TL~HY~V~dgatl~l~~ 109 (111)
T 4e71_A 93 TLMHYNVRDGATLILSK 109 (111)
T ss_dssp BHHHHTCCTTCEEEEEE
T ss_pred chhhcCCCCCCEEEEEe
Confidence 69999999999997754
No 232
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.68 E-value=0.031 Score=31.76 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=49.0
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
.|.+.|+...+ ...++++...|+.+|.+.+ ++++....+..+|+.+..+. -+++|+.|.++-..-||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 36666665332 3356777778999999876 56677777779999887554 68899999888776666
No 233
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=96.62 E-value=0.024 Score=42.68 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=53.2
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcC----CCCcceEEEEC------CeecCCCCcccccCCCCCCEEEEE
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG----IPPVQQRLIYA------GKQLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~g----i~~~~q~l~~~------g~~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
+.|... +.+.++.++++.||.+....|.++.. .++++.-|.+. |.=|++.++|+.|++++++.|+..
T Consensus 6 ~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 6 LKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence 334443 66778999999999999999987774 36888888873 334788889999999999987765
No 234
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.57 E-value=0.007 Score=42.39 Aligned_cols=64 Identities=27% Similarity=0.410 Sum_probs=52.9
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCCCCc-ceEEE--E-CC--eecCC-CCcccccCCCCCCEEEEEEeecCC
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGIPPV-QQRLI--Y-AG--KQLAD-DKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi~~~-~q~l~--~-~g--~~L~d-~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+.+.++..+|+.+|++.++...++|++ ..||- + .+ ..|++ +.+|.++++.++..|.+-++...|
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 567789999999999999999999987 68876 2 22 35665 679999999999999999888776
No 235
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.54 E-value=0.01 Score=34.34 Aligned_cols=66 Identities=12% Similarity=0.308 Sum_probs=47.7
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
|.+.|+........+++++..||++|-+ ..|+|++......||+.+..+. +.+|++|.++--.-||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 4566666544455688999999999877 5689999987778998876544 3358999776555444
No 236
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=96.48 E-value=0.012 Score=34.60 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=51.2
Q ss_pred EeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
-.++-..++..||+.++++.+++.+...+...+..|+++++|.+.+++-...+.+.+-.
T Consensus 7 qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 7 QAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 34555678899999999999999999999988888999999999999988887776654
No 237
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.45 E-value=0.018 Score=37.18 Aligned_cols=64 Identities=30% Similarity=0.463 Sum_probs=45.7
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHh--CCCC------CceEEEEc----ce-EeecC-------------ccccccccccc
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~--~i~~------~~q~L~~~----g~-~L~d~-------------~~L~~~~i~~~ 64 (154)
..+++.|-..+||.++|++|-... |.|- ++.-|-|. |+ .|.|. .||+.|++.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 458899999999999999997664 4543 33455552 33 35553 27999999999
Q ss_pred cceeeeeeee
Q 031706 65 STLHLVLRLR 74 (154)
Q Consensus 65 ~~i~l~~~~~ 74 (154)
+++.+..+..
T Consensus 121 a~l~l~~~~~ 130 (138)
T 2r2o_A 121 ATVALVPCLT 130 (138)
T ss_dssp CEEEEEEC--
T ss_pred CEEEEEECCC
Confidence 9998877654
No 238
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=96.41 E-value=0.019 Score=40.61 Aligned_cols=64 Identities=27% Similarity=0.339 Sum_probs=53.6
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCCCCc-ceEEEE-C----CeecCC-CCcccccCCCCCCEEEEEEeecCC
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGIPPV-QQRLIY-A----GKQLAD-DKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi~~~-~q~l~~-~----g~~L~d-~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
++..++..+|+.+|++.++...+++++ ..||-. . ...|.| +.+|.++++.++..|.+=.+-..|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 456779999999999999999999997 688863 3 235664 689999999999999998887776
No 239
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=96.35 E-value=0.032 Score=44.18 Aligned_cols=106 Identities=8% Similarity=0.117 Sum_probs=85.6
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc------ceEee-cCcccccc--ccccccceeeeeeee-c---------
Q 031706 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DGRTLADY--NIQKESTLHLVLRLR-G--------- 75 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~------g~~L~-d~~~L~~~--~i~~~~~i~l~~~~~-~--------- 75 (154)
+-++.+++|.+|-..|.+..|+|++.-..+|. ...|+ .+.++.+. .+.+|+.|.+..... .
T Consensus 151 ~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~ 230 (530)
T 2ylm_A 151 IYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAK 230 (530)
T ss_dssp EEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecCCccccccCCCHH
Confidence 56889999999999999999999988777775 24466 57799999 999999987776533 1
Q ss_pred --------ceeeEEee---cCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 76 --------GTMIKVKT---LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 76 --------~~~i~v~~---~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
.+.+.++. .+...+.+.++...|-.++-++++++.+++|...|+.
T Consensus 231 ~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l~~dP~~lRf~ 286 (530)
T 2ylm_A 231 EYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRLNTDPMLLQFF 286 (530)
T ss_dssp HHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHHTSCGGGEEEE
T ss_pred HHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHhCCCchhEEEE
Confidence 13444443 2356689999999999999999999999999999886
No 240
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.27 E-value=0.043 Score=31.18 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=45.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|+|+|.... ....++++...||.+|.+.+ ++++....+..+|.....+. -+++|+.|.+....
T Consensus 5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V 67 (70)
T 1ryj_A 5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVI 67 (70)
T ss_dssp EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECT
T ss_pred EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEecc
Confidence 566666543 23567888889999999876 56666666778888876554 57789998776543
No 241
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.20 E-value=0.031 Score=36.10 Aligned_cols=64 Identities=28% Similarity=0.554 Sum_probs=45.6
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhc--CCC------CcceEEEE----CCe-ecCCC-------------CcccccCCCC
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIY----AGK-QLADD-------------KTARDYNIEG 139 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~q~l~~----~g~-~L~d~-------------~~L~~~~i~~ 139 (154)
...+++.|-.++||.++|++|-+.. |.| +++.-|-| .|+ .|.|. .||+.|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3568899999999999999995444 344 44556665 233 25442 3799999999
Q ss_pred CCEEEEEEee
Q 031706 140 GSVLHLVLAL 149 (154)
Q Consensus 140 ~~~i~l~~~~ 149 (154)
|+++.++-+.
T Consensus 120 ga~l~l~~~~ 129 (138)
T 2r2o_A 120 GATVALVPCL 129 (138)
T ss_dssp TCEEEEEEC-
T ss_pred CCEEEEEECC
Confidence 9999887653
No 242
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=96.15 E-value=0.017 Score=34.16 Aligned_cols=45 Identities=11% Similarity=0.187 Sum_probs=39.1
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
|.|.|... -++.++++++.+..+|.++|.++.++|++...|.|..
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 35666654 6899999999999999999999999999999999964
No 243
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.06 E-value=0.011 Score=34.76 Aligned_cols=62 Identities=13% Similarity=0.232 Sum_probs=53.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc---ceEeecCcccccccccc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 63 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~---g~~L~d~~~L~~~~i~~ 63 (154)
++.|.-..-+...+.|+|..++.+|--.|-++-.+.|+.-.|.-. +..|+-+++|.+|||++
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 456666666778899999999999999999999999998888854 46789999999999986
No 244
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=96.01 E-value=0.025 Score=39.60 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=50.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCC-ceEEEE-c--c--eEeec-Cccccccccccccceeeeeeee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A--G--KQLED-GRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~-~--g--~~L~d-~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
+++.++..+|+.+|++++.+.+++|++ ..||.. . + ..|++ +.+|.++++.++..|.+-.+..
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 567889999999999999999999997 577762 2 2 45665 4699999999999997777654
No 245
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=95.92 E-value=0.038 Score=39.02 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=50.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCC-ceEEEE-c----ceEeec-Cccccccccccccceeeeeeee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~-~----g~~L~d-~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
+++.++..+|+.+|++++.+.++++++ .-||.. . ...|.| +.+|.++++.++..|.+-.+..
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 557789999999999999999999997 578774 3 245665 5799999999999987776644
No 246
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.69 E-value=0.094 Score=33.35 Aligned_cols=65 Identities=26% Similarity=0.363 Sum_probs=46.6
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHh--CCC------CCceEEEEc----ce-EeecC-------------ccccccccc
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG-------------RTLADYNIQ 62 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~-~L~d~-------------~~L~~~~i~ 62 (154)
++..+++.+-..+||.++|++|-... +.| ++...|-|. |. .|.|. .||+.|++.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34568899999999999999997653 444 345566652 23 25441 369999999
Q ss_pred cccceeeeeee
Q 031706 63 KESTLHLVLRL 73 (154)
Q Consensus 63 ~~~~i~l~~~~ 73 (154)
+|+++.+..+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999877553
No 247
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.68 E-value=0.078 Score=32.98 Aligned_cols=63 Identities=29% Similarity=0.442 Sum_probs=43.6
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhc--CCC------CcceEEEEC----CeecCC-------------CCcccccCCCCC
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA----GKQLAD-------------DKTARDYNIEGG 140 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~q~l~~~----g~~L~d-------------~~~L~~~~i~~~ 140 (154)
+..+.+.|-.++||.++|++|-+.. |.| ++++.|-|. |+.|.| =+||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4567888889999999999985433 343 455667663 334443 246999999999
Q ss_pred CEEEEEEe
Q 031706 141 SVLHLVLA 148 (154)
Q Consensus 141 ~~i~l~~~ 148 (154)
+++.++-+
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99977643
No 248
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=95.60 E-value=0.17 Score=32.05 Aligned_cols=60 Identities=35% Similarity=0.548 Sum_probs=41.3
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhH----hCCCCC----ceEEEEc-c---eEeec----------C----ccccccccccc
Q 031706 11 KTITLEVESSDTIDNVKAKIQDK----EGIPPD----QQRLIFA-G---KQLED----------G----RTLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~----~~i~~~----~q~L~~~-g---~~L~d----------~----~~L~~~~i~~~ 64 (154)
..+++.+-..+||.++|++|-.. .|.|-+ ...|-|. | ..|.| . .||+.|++.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46889999999999999999533 466643 3445442 2 23332 1 25888999999
Q ss_pred cceeee
Q 031706 65 STLHLV 70 (154)
Q Consensus 65 ~~i~l~ 70 (154)
+++.+.
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998665
No 249
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=95.45 E-value=0.045 Score=32.26 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=35.7
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK 124 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~ 124 (154)
.-++.+.+++..+..+|.++|+++.++|++..+|.|+..
T Consensus 13 ~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 13 KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 368889999999999999999999999999999999764
No 250
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.38 E-value=0.26 Score=31.33 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=45.7
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhc--CCC------CcceEEEEC----Ce-ecCC-------------CCcccccCCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA----GK-QLAD-------------DKTARDYNIE 138 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~q~l~~~----g~-~L~d-------------~~~L~~~~i~ 138 (154)
++..+.+.|-.++||.++|++|-+.. +.| ++++.|-|. |+ .|.| -+||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 45568888889999999999985433 344 456677762 22 2443 1469999999
Q ss_pred CCCEEEEEEe
Q 031706 139 GGSVLHLVLA 148 (154)
Q Consensus 139 ~~~~i~l~~~ 148 (154)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999988754
No 251
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=95.35 E-value=0.099 Score=29.87 Aligned_cols=70 Identities=14% Similarity=0.305 Sum_probs=44.6
Q ss_pred CEEEEEeCCC-CEEEEEEcCCCcHHHHHHHHHhHhCCCC--CceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 1 m~v~v~~~~g-~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
|.|+|+.... +.-.+++ ...||.+|.+.+....++.. ..-.+..||....+ .+.-+++|++|.+.....|
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 7788886643 1134666 67899999999986533321 23445567766432 3456888999987765444
No 252
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=95.32 E-value=0.23 Score=29.93 Aligned_cols=73 Identities=21% Similarity=0.419 Sum_probs=47.2
Q ss_pred cceeeEEeecC------C-ceEEEeeCCcchHHHHHHHHhhhcC-C----------CCcceEEEECCeecCCCCcccccC
Q 031706 75 GGTMIKVKTLT------G-KEIEIDIEPTDTIERIKERVEEKEG-I----------PPVQQRLIYAGKQLADDKTARDYN 136 (154)
Q Consensus 75 ~~~~i~v~~~~------g-~~~~~~v~~~~tV~~LK~~i~~~~g-i----------~~~~q~l~~~g~~L~d~~~L~~~~ 136 (154)
+.|.+.|+... | ....+++++..||.+|.+.+..... + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 34555555532 3 3566788778899999999977642 1 1234567788887653 567
Q ss_pred CCCCCEEEEEEeecCC
Q 031706 137 IEGGSVLHLVLALRGG 152 (154)
Q Consensus 137 i~~~~~i~l~~~~~gg 152 (154)
+++|+.|.++=..-||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 8999999887666555
No 253
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=95.30 E-value=0.086 Score=30.92 Aligned_cols=60 Identities=18% Similarity=0.380 Sum_probs=51.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
+.-.++-..+++.||..++.+.|++-+.-.++..+..|+++.+|.+.+++-...+.+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvq 64 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQ 64 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEE
Confidence 445677788999999999999999999999999988899999999999987777766544
No 254
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.28 E-value=0.09 Score=33.04 Aligned_cols=63 Identities=32% Similarity=0.484 Sum_probs=44.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHh--CCCC------CceEEEEc-c---e-EeecC-------------ccccccccccc
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIFA-G---K-QLEDG-------------RTLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~--~i~~------~~q~L~~~-g---~-~L~d~-------------~~L~~~~i~~~ 64 (154)
..+.+.|-..+||.++|++|-... |.|. +...|-|. | + .|.|. .||+.|++.+|
T Consensus 27 ~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 106 (117)
T 4e74_A 27 PEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDG 106 (117)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTT
T ss_pred CceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCC
Confidence 448889999999999999997553 4543 34556552 2 2 35441 36999999999
Q ss_pred cceeeeeee
Q 031706 65 STLHLVLRL 73 (154)
Q Consensus 65 ~~i~l~~~~ 73 (154)
+++.+..+.
T Consensus 107 atl~l~~~~ 115 (117)
T 4e74_A 107 SVVALVSKQ 115 (117)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999887654
No 255
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=95.19 E-value=0.11 Score=30.91 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=44.5
Q ss_pred CCceEEEeeCCc-chHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPT-DTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~-~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+. +++++. .||.+|.+.+ ++++....+..||+.+.. ....+.-+++|+.|.++-..-||
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~-~~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK-ERYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG-GGTTTSBCCSSSEEEEEEECCC-
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh-hhcCCcCCCCCCEEEEEcccccC
Confidence 4554 455666 8999999876 566777777799987753 33556679999999988777666
No 256
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=94.93 E-value=0.036 Score=35.62 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.1
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~ 46 (154)
..+.|..++|+.+|+..|++..|+|+++|+|..-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 4678999999999999999999999999999864
No 257
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=94.87 E-value=0.27 Score=29.67 Aligned_cols=68 Identities=10% Similarity=0.247 Sum_probs=44.8
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCcHHHHHHHHHhHhC-C----------CCCceEEEEcceEeecCccccccccc
Q 031706 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYNIQ 62 (154)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~-i----------~~~~q~L~~~g~~L~d~~~L~~~~i~ 62 (154)
|+|+|+... | ....++++...||.+|.+.+..... + ......+..||+.... +.-++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 556666442 3 4677888888999999999977631 1 1133445667766542 56788
Q ss_pred cccceeeeeee
Q 031706 63 KESTLHLVLRL 73 (154)
Q Consensus 63 ~~~~i~l~~~~ 73 (154)
+|++|.+....
T Consensus 85 dGDeV~i~ppv 95 (98)
T 1vjk_A 85 DGDVVGVFPPV 95 (98)
T ss_dssp TTCEEEEESCC
T ss_pred CCCEEEEECCC
Confidence 89998776543
No 258
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=94.58 E-value=0.22 Score=28.33 Aligned_cols=57 Identities=18% Similarity=0.359 Sum_probs=40.4
Q ss_pred EeeCCcchHHHHHHHHhhhcCCCC--cceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 91 IDIEPTDTIERIKERVEEKEGIPP--VQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~gi~~--~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+++ +..||++|.+.+....++.. ....+..||+.+.+ .+.-+++|++|.++=..-||
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 455 56799999999986544321 45566678876442 35578899999888777776
No 259
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=94.25 E-value=0.6 Score=29.58 Aligned_cols=61 Identities=30% Similarity=0.452 Sum_probs=41.7
Q ss_pred ceEEEeeCCcchHHHHHHHHhh-h---cCCC----CcceEEEEC-C---eec----------CC----CCcccccCCCCC
Q 031706 87 KEIEIDIEPTDTIERIKERVEE-K---EGIP----PVQQRLIYA-G---KQL----------AD----DKTARDYNIEGG 140 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~-~---~gi~----~~~q~l~~~-g---~~L----------~d----~~~L~~~~i~~~ 140 (154)
+.+++.|-.++||.++|++|-+ . .+.| ++++.|-|. | ..| ++ -+||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 4578888899999999999832 2 3665 345555542 2 122 12 136899999999
Q ss_pred CEEEEEE
Q 031706 141 SVLHLVL 147 (154)
Q Consensus 141 ~~i~l~~ 147 (154)
+++.++-
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9997764
No 260
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=94.17 E-value=0.42 Score=34.55 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=52.6
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcc-eEEEE---CCe--ecCCCCcccccCCCCCCEEEEEEee
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIY---AGK--QLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-q~l~~---~g~--~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
+.+.|..++| ++.+.++++.|+.++-+.|++..|+.... .-|.+ +|. -|+.++++.+.++..+....+.+|.
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 4567778888 67899999999999999999999985443 34444 233 3667788888776666666565554
No 261
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=93.95 E-value=0.25 Score=27.28 Aligned_cols=60 Identities=17% Similarity=0.350 Sum_probs=43.0
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.+ ++ +..||.+|.+.+ ++++....+..+|+.+.. ....+.-+++|+.|.++-..-||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG-LEVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG-GGCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc-cccCCcCCCCCCEEEEEeecccC
Confidence 55554 44 567999999877 456777777789987753 23455678999999988777666
No 262
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=93.66 E-value=0.49 Score=27.79 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=44.6
Q ss_pred ceEEEeeCCcchHHHHHHHHhhhcC-C-----C-----CcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 87 KEIEIDIEPTDTIERIKERVEEKEG-I-----P-----PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~~~g-i-----~-----~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
....++++...||.+|.+.+..... + . .....+..||+.... +.-+++|+.|.++=..-||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4567788777899999999987653 1 0 012567788887764 4568899999888777776
No 263
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=93.60 E-value=0.17 Score=28.99 Aligned_cols=65 Identities=11% Similarity=0.216 Sum_probs=45.4
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+| +|+.+. + ...||.+|-+. .++++...-+..||..+..+ ...+.-+++||+|.+.....||
T Consensus 1 M~I~v---NG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 1 MLVTI---NGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp CCEEE---TTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CEEEE---CCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 44444 566544 4 66899998775 57888877888899887432 3456678899999887655544
No 264
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=93.55 E-value=0.16 Score=28.26 Aligned_cols=61 Identities=11% Similarity=0.214 Sum_probs=43.7
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+. +++....|+.+|.+.+ ++++....+..+|+.+.. ....+.-+++|+.|.++-..-||
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~-~~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR-EQWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH-HHHTTCCCCTTEEECEEESCCCC
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc-hhcCCcCCCCCCEEEEEeecccC
Confidence 4544 3556778999999877 466777777789987753 22345578899999888776665
No 265
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=93.53 E-value=0.41 Score=30.03 Aligned_cols=63 Identities=30% Similarity=0.498 Sum_probs=44.2
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhc--CCC------CcceEEEE-CC---e-ecCC-------------CCcccccCCCC
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIY-AG---K-QLAD-------------DKTARDYNIEG 139 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~q~l~~-~g---~-~L~d-------------~~~L~~~~i~~ 139 (154)
...+.+.|-.++||.++|++|-+.. +.| ++++.|-| .| + .|.| =+||+.|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 4457888889999999999985433 444 44566665 22 2 2332 24699999999
Q ss_pred CCEEEEEEe
Q 031706 140 GSVLHLVLA 148 (154)
Q Consensus 140 ~~~i~l~~~ 148 (154)
|+++.++-+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988765
No 266
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=93.51 E-value=0.66 Score=33.89 Aligned_cols=74 Identities=16% Similarity=0.132 Sum_probs=54.4
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCC-cceEEEE--CCe--ecCCCCcccccCCCCCCEEEEEEee
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP-VQQRLIY--AGK--QLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~-~~q~l~~--~g~--~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
..+.+.|..++| ++.+.++++.|+.+|-+.|++..|+.- +-.-|.+ ++. -|+.++++.+.++..+....+.+|.
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr~ 99 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA 99 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEEE
Confidence 346677888888 788999999999999999999999854 3344444 343 3677788888876666655555554
No 267
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.33 E-value=0.091 Score=33.72 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=29.4
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
..+.|..+.|+.+|+..|++..|+|++.|||-
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEE
Confidence 45788899999999999999999999999986
No 268
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=93.13 E-value=0.19 Score=28.72 Aligned_cols=60 Identities=7% Similarity=0.169 Sum_probs=45.5
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+|+.. ++ +..|+.+|.+. .++++....+..||..+. ....++.-+++|+.|.++-..-||
T Consensus 6 NG~~~--e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVp-r~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQR--EV-QSASVAALMTE----LDCTGGHFAVALNYDVVP-RGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEEE--CC-CCSBHHHHHHH----TTCCSSSCEEEESSSEEC-HHHHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEEE--Ec-CCCcHHHHHHH----cCCCCCcEEEEECCEECC-hHHcCcccCCCCCEEEEEccccCC
Confidence 45544 44 56799998774 478888888889998775 334667789999999998888777
No 269
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=93.11 E-value=0.24 Score=28.24 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=41.8
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCCcce--EEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQ--RLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q--~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...+++....||.+|.+.+..... ..... .+..||+....+ .-+++|+.|.++=..-||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 455667777899999999876642 01223 677899877643 578899999887766665
No 270
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=93.10 E-value=0.37 Score=27.69 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=41.1
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcC-----CCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEG-----IPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~g-----i~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
...++ .+..||.+|.+.+..... ++.....+..||+.... +.-+++|+.|.++=..-||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34455 556799999999876532 23334567788887643 4578899999887766665
No 271
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=92.92 E-value=0.27 Score=27.30 Aligned_cols=59 Identities=8% Similarity=0.146 Sum_probs=40.1
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
+|+. +++....||.+|.+.+ ++++....+..+|...... ...+.-+++|+.|.+.....
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~ 64 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIA 64 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCC
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecc
Confidence 5554 4556788999999886 4666666677888876432 23345678899997775443
No 272
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=92.84 E-value=0.35 Score=28.02 Aligned_cols=66 Identities=17% Similarity=0.350 Sum_probs=45.8
Q ss_pred CEEEEEeCCCCEEEEEEc--CCCcHHHHHHHHHhHhCCC-CCceEEEEcceEeecCccccccccccccceeeeeeeecc
Q 031706 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~--~~~tV~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~ 76 (154)
|+|+| ||+.+ +++ ...||.+|-+.+ +++ +...-+..||..+..+ ...++-+++||+|.+.....||
T Consensus 1 M~I~v---NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTV---NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEE---TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEE---CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 55554 56644 455 678999998764 667 6666778899887443 4556678899999887655544
No 273
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=92.36 E-value=1 Score=32.43 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=51.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCc-eEEEEc---c--eEeecCccccccccccccceeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~---g--~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|.+.|...+| +..+.+++++|+.++-+.|.+..|+.... --|.+. | ..|+.+..+.+.+...+....+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4678888888 68899999999999999999999986543 345542 3 357777788777655555444433
No 274
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=92.26 E-value=1.1 Score=32.74 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=51.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC-ceEEEE--cc--eEeecCccccccccccccceeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AG--KQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~--~g--~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
.+.|..++| ++.+.+++++|+.++-+.|.+..|+... .--|.| .| ..|+.+..+.+...+.+....+..
T Consensus 24 ~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 24 TVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp EEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred EEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 577888898 7889999999999999999999998753 334555 23 357778888887655555444433
No 275
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=92.21 E-value=0.2 Score=29.04 Aligned_cols=62 Identities=11% Similarity=0.278 Sum_probs=46.8
Q ss_pred CCceEEEeeC--CcchHHHHHHHHhhhcCCC-CcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 85 TGKEIEIDIE--PTDTIERIKERVEEKEGIP-PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 85 ~g~~~~~~v~--~~~tV~~LK~~i~~~~gi~-~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
+|+.. +++ ...||.+|.+.+ +++ +....+..||..+.. ....+.-+++|+.|.++-..-||.
T Consensus 6 NGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr-~~~~~~~L~dGD~IEIv~~VgGG~ 70 (78)
T 2k5p_A 6 NGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER-EAFDATTVKDGDAVEFLYFMGGGK 70 (78)
T ss_dssp TTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT-THHHHCEECSSBCEEECCCCCCSC
T ss_pred CCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh-HHcCcccCCCCCEEEEEeeecCCC
Confidence 46544 455 668999998855 677 777778899988753 346677889999999988888874
No 276
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=92.19 E-value=0.81 Score=26.81 Aligned_cols=60 Identities=13% Similarity=0.213 Sum_probs=40.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhC-C-----C-----CCceEEEEcceEeecCccccccccccccceeeeeeeec
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~-i-----~-----~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~ 75 (154)
....++++...||.+|.+.+..... + . .....+..||+..+. +.-+++|++|.+.....|
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~G 88 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSG 88 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCC
Confidence 5677888888999999999987642 1 0 012355667776653 456888999977755443
No 277
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=92.10 E-value=1 Score=26.80 Aligned_cols=40 Identities=13% Similarity=0.230 Sum_probs=33.4
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCc-eEEEEcce
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 48 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~g~ 48 (154)
+|....+.++++.+..+|.+++....+++... ..+.|...
T Consensus 14 ~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 14 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 67889999999999999999999999987544 56777543
No 278
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=91.92 E-value=0.91 Score=36.30 Aligned_cols=74 Identities=20% Similarity=0.291 Sum_probs=54.1
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCc-ceEEEEC---C--eecCCCCcccccCCCCCCEEEEEEee
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV-QQRLIYA---G--KQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~-~q~l~~~---g--~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
.+.+.|..++| ++.+.++++.|+.+|-..|+...|+.-. -+-|.+. | .-|+.++++.+.++..+....+.+|.
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FRv 82 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA 82 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEEE
Confidence 35677778888 6789999999999999999999998543 3455442 2 24666788888777666666666654
Q ss_pred c
Q 031706 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
+
T Consensus 83 k 83 (575)
T 2i1j_A 83 K 83 (575)
T ss_dssp S
T ss_pred E
Confidence 3
No 279
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=91.85 E-value=0.9 Score=36.50 Aligned_cols=64 Identities=30% Similarity=0.484 Sum_probs=44.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhH--hCCCC------CceEEEEc----ce-EeecC-------------ccccccccccc
Q 031706 11 KTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIFA----GK-QLEDG-------------RTLADYNIQKE 64 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~--~~i~~------~~q~L~~~----g~-~L~d~-------------~~L~~~~i~~~ 64 (154)
..+.+.|-..+||.++|++|-.. .|.|. +..-|-|. |+ .|.|. .||+.|++.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 34889999999999999999754 25553 34455552 32 35442 36999999999
Q ss_pred cceeeeeeee
Q 031706 65 STLHLVLRLR 74 (154)
Q Consensus 65 ~~i~l~~~~~ 74 (154)
+++.+..+..
T Consensus 354 a~v~L~p~~~ 363 (644)
T 3hm6_X 354 ATVALVPCLT 363 (644)
T ss_dssp CEEEEEEC--
T ss_pred cEEEEEeccc
Confidence 9998876653
No 280
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=91.67 E-value=1 Score=26.80 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=34.3
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcc-eEEEECCee
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIYAGKQ 125 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-q~l~~~g~~ 125 (154)
.|..+.+.++++.+..+|.+++.+..+++..+ ..+.|...+
T Consensus 14 ~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 14 RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 56778899999999999999999999986544 788887763
No 281
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=91.63 E-value=1.1 Score=26.45 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=42.9
Q ss_pred CEEEEEeCC------CCEEEEEEcCCCcHHHHHHHHHhHhCC------C-------CCceEEEEcceEeecCcccccccc
Q 031706 1 MQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNI 61 (154)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~~~tV~~lK~~i~~~~~i------~-------~~~q~L~~~g~~L~d~~~L~~~~i 61 (154)
|+|+|+... |....++. ...||.+|.+.+.....- . .....+..||....+..- .+.-+
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L 78 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAI 78 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBC
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCC
Confidence 667777442 32234664 568999999999876520 0 012345566765543221 24568
Q ss_pred ccccceeeeeeeec
Q 031706 62 QKESTLHLVLRLRG 75 (154)
Q Consensus 62 ~~~~~i~l~~~~~~ 75 (154)
++|++|.+.....|
T Consensus 79 ~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 79 ADGDSVTILPAVAG 92 (93)
T ss_dssp CTTCEEEEEECCTT
T ss_pred CCCCEEEEECCCCC
Confidence 89999987765443
No 282
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=91.58 E-value=1.2 Score=35.66 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=48.9
Q ss_pred EEEEEeCC---CCEEEEEEcCCCcHHHHHHHHHhHh--CCC------CCceEEEEc----ce-EeecC------------
Q 031706 2 QIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIFA----GK-QLEDG------------ 53 (154)
Q Consensus 2 ~v~v~~~~---g~~~~~~v~~~~tV~~lK~~i~~~~--~i~------~~~q~L~~~----g~-~L~d~------------ 53 (154)
.++|-..+ ...+.+.|-..+||.++|++|-... |.| ++..-|-|. |+ .|.|.
T Consensus 235 tL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkr 314 (627)
T 3ig3_A 235 TLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKR 314 (627)
T ss_dssp EEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEE
T ss_pred EEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeE
Confidence 34554443 2568899999999999999997553 444 344556552 22 34441
Q ss_pred -ccccccccccccceeeeeeee
Q 031706 54 -RTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 54 -~~L~~~~i~~~~~i~l~~~~~ 74 (154)
.||+.|++.+|+++.+..+..
T Consensus 315 LNTL~HY~V~Dga~v~L~p~~~ 336 (627)
T 3ig3_A 315 VNSLAHYQVTDGSLVALVPKQV 336 (627)
T ss_dssp CCBTTTTTCCTTCEEEEEEC--
T ss_pred ecchhhcCCCCCceEEEEeccc
Confidence 369999999999998887654
No 283
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.44 E-value=0.72 Score=27.30 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=41.0
Q ss_pred CCCEEEEEEcCC-CcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 9 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 9 ~g~~~~~~v~~~-~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
||+ +++++.. .||.+|.+.+ ++++....+..||..+..+ ...+.-+++||.|.+.....
T Consensus 26 NGe--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~ 85 (87)
T 1tyg_B 26 NGK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVG 85 (87)
T ss_dssp TTE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECC
T ss_pred CCE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccc
Confidence 555 4455666 8999998876 5666666677888877432 34456688999998775443
No 284
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=91.16 E-value=0.97 Score=32.85 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=46.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCc-eEEEEc---c--eEeecCccccccc
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYN 60 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~-q~L~~~---g--~~L~d~~~L~~~~ 60 (154)
|.+.|..++|....+++++.+|+.+|-+.|.+..|+.... .-|.+. | ..|+.++.+.+..
T Consensus 18 ~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~ 83 (296)
T 3qij_A 18 GHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQV 83 (296)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC
T ss_pred EEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhc
Confidence 4688999999999999999999999999999999976533 455543 2 3566666666653
No 285
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=90.79 E-value=1.6 Score=34.88 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=52.2
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC-ceEEEEcc-----eEeecCccccccccccccceeeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~-~q~L~~~g-----~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
|.+.|..++| ++.+.+++++|+.+|-..|....|+... ..-|.|.. .+|+.+.++.+.++..+..+.+.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 3578888888 6789999999999999999999998643 34566532 4677777888776655555444433
No 286
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=90.50 E-value=0.88 Score=24.99 Aligned_cols=59 Identities=12% Similarity=0.268 Sum_probs=40.1
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
.||+.+. + ...||.+|.+.+ ++++....+..+|.....+ .-.+.-+++|+.|.+.....
T Consensus 4 vNg~~~~--~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~ 62 (64)
T 2cu3_A 4 LNGEPRP--L-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQ 62 (64)
T ss_dssp ETTEEEC--C-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCC
T ss_pred ECCEEEE--c-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecc
Confidence 3666554 4 678999999887 4556666677888877543 33445688999998775443
No 287
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=90.00 E-value=0.1 Score=30.14 Aligned_cols=53 Identities=19% Similarity=0.332 Sum_probs=39.7
Q ss_pred EeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 91 IDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+++++..||.+|.+.+ +++.....+..||+....+ .-+++|+.|.++-..-||
T Consensus 25 ~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 25 IEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 4566678999998865 4667777788899887654 578899999877666665
No 288
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=89.83 E-value=1.3 Score=24.69 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=39.7
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
|.+.|..++|+. .+++...|+.++-+.+....+ ....-...+|+..+-+ +-+.+|+.|.+.-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 788898888875 567788999999888754321 1112234577665443 4455677776553
No 289
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=89.72 E-value=1.7 Score=25.30 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=40.4
Q ss_pred EeeCCcchHHHHHHHHhhhcC------C-----CCcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 91 IDIEPTDTIERIKERVEEKEG------I-----PPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~g------i-----~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
++++...||.+|.+.+..... + ......+..||+..... .-.+.-+++|+.|.++=..-||
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCTTCC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCCCCC
Confidence 345556799999999977642 1 11345677888766422 2235568999999887666665
No 290
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=89.71 E-value=1.7 Score=32.54 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=39.5
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEe--ecCccccccc
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN 60 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L--~d~~~L~~~~ 60 (154)
....+.+.+..|+.++++++++.++++++.|.|++.+..+ +.......|.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 4566888999999999999999999999999999987433 3344444443
No 291
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=89.71 E-value=2 Score=25.30 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=41.2
Q ss_pred EEeeCCcchHHHHHHHHhhhcCC------C-------CcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 90 EIDIEPTDTIERIKERVEEKEGI------P-------PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi------~-------~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
.++. +..||++|.+.+..++.- . .....+..||+...+..- .+.-+++|++|.++=..-||
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTTC
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCCC
Confidence 3554 457999999999877531 1 113566788887653222 24568999999888777776
No 292
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=89.52 E-value=0.22 Score=28.67 Aligned_cols=52 Identities=8% Similarity=0.186 Sum_probs=37.5
Q ss_pred EEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
.++++...||.+|.+.+ ++++....+..+|+....+ .-+++|++|.+.....
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~ 75 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVS 75 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccc
Confidence 44566778999998875 4566666677888887654 5688899987765443
No 293
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=89.29 E-value=0.76 Score=26.07 Aligned_cols=58 Identities=10% Similarity=0.144 Sum_probs=39.0
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCce--EEEEcceEeecCccccccccccccceeeeeeee
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q--~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
....++++...||.+|.+.+..... ..... .+..||+.... +.-+++|++|.+.....
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~ppv~ 75 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPPVS 75 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECT-----TSEECTTCEEEEECSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCC-----CCCcCCCCEEEEECCCC
Confidence 4566777778899999999876631 01222 56678877754 35688899987765433
No 294
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=89.12 E-value=1.1 Score=27.23 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=47.3
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcce-EEE--EC----CeecCCCCc----ccccCCCCCCEEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQ-RLI--YA----GKQLADDKT----ARDYNIEGGSVLH 144 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q-~l~--~~----g~~L~d~~~----L~~~~i~~~~~i~ 144 (154)
...+.|...+|....+.|++.+|++++-+.++.+.+...+.- .|+ +. -+.++|+.. ++...+.....++
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~ 88 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFV 88 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEE
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEE
Confidence 345667778999999999999999999999999998643332 222 22 245666655 3344455555654
Q ss_pred E
Q 031706 145 L 145 (154)
Q Consensus 145 l 145 (154)
+
T Consensus 89 F 89 (100)
T 1wgr_A 89 F 89 (100)
T ss_dssp E
T ss_pred E
Confidence 4
No 295
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=89.11 E-value=1.1 Score=25.69 Aligned_cols=58 Identities=3% Similarity=0.083 Sum_probs=37.6
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhC-----CCCCceEEEEcceEeecCccccccccccccceeeeeeee
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~-----i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
....++ ....||.+|.+.+..... ++.....+..||+.... +..+++|++|.+.....
T Consensus 17 ~~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~ 79 (81)
T 1fm0_D 17 DATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVT 79 (81)
T ss_dssp SEEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCC
T ss_pred CeEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCC
Confidence 345555 567899999999875421 22333456677876642 45678899987765443
No 296
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=88.92 E-value=1.2 Score=27.77 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=44.6
Q ss_pred CEEEEEeCC------C--CEEEEEEcC---CCcHHHHHHHHHhHhCCCCCceEEEEc-c------eEeecCc---cc--c
Q 031706 1 MQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQLEDGR---TL--A 57 (154)
Q Consensus 1 m~v~v~~~~------g--~~~~~~v~~---~~tV~~lK~~i~~~~~i~~~~q~L~~~-g------~~L~d~~---~L--~ 57 (154)
|+|+|+... | +.+.++++. ..||.+|-+.+.+.. |..+.+|+.. | ..+-++. .+ .
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl 89 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWELLGEL 89 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeeeccCCc
Confidence 567777653 2 356788873 369999999998775 2222233211 1 1222222 22 3
Q ss_pred ccccccccceeeeeeeecc
Q 031706 58 DYNIQKESTLHLVLRLRGG 76 (154)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~~ 76 (154)
++.+++|+.|.+.....++
T Consensus 90 dt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TCBCCSSEEEEEEECSCCC
T ss_pred CcCCCCCCEEEEeCCCCCC
Confidence 5778999998887666555
No 297
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=88.89 E-value=1.6 Score=31.66 Aligned_cols=72 Identities=15% Similarity=-0.033 Sum_probs=49.7
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcc-eEEEEC---Ce--ecCCCCcccccCCCCCCEEEEE
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIYA---GK--QLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~-q~l~~~---g~--~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
..+.+.|..++|....+.++++.|+.+|-..|+++.|+.-.. .-|.+. |. -|+..+++.+.......++++.
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 346778888999999999999999999999999999985433 445432 22 3666677776644333444443
No 298
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=88.44 E-value=2.8 Score=25.32 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=52.8
Q ss_pred eeeEEeecCC---ceEEEeeCCcchHHHHHHHHhhhcCC--CCcceEEEECCe---ecCCCCcccccCCCCCCEEEEE
Q 031706 77 TMIKVKTLTG---KEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGK---QLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 77 ~~i~v~~~~g---~~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~q~l~~~g~---~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
..|+|...+. ....+.|....-|+-+-.++-+...+ .-++..|-+..+ .+.-..+|..|||+.++.+++.
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ft 97 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFT 97 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeecc
Confidence 4455666443 55788898889999999999877765 455666666554 5778999999999999988764
No 299
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=88.43 E-value=2.9 Score=25.54 Aligned_cols=68 Identities=13% Similarity=0.176 Sum_probs=48.8
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE---ECCee--cCCCCcccccCCCCCCEEEEEEe
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI---YAGKQ--LADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~---~~g~~--L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
|...+....++.++.+.|+.+++..++.+.+..-+.+.|. ++|.. ++++..--.-.+..+..|++..+
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 3344666777888889999999999999999877677776 56763 45444433345566778887765
No 300
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=87.93 E-value=1.6 Score=26.59 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=45.3
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCce-EEE-E-----cceEeecCccc----cccccccccceeee
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLI-F-----AGKQLEDGRTL----ADYNIQKESTLHLV 70 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q-~L~-~-----~g~~L~d~~~L----~~~~i~~~~~i~l~ 70 (154)
|.|-..+|....+.|++++|+.++-+.+..+.+...+.- .|+ . .-+.++|+..+ +.+.+.....+.+.
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~ 90 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFR 90 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEEC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEe
Confidence 566778999999999999999999999999988653332 222 1 12456776543 33444444444443
No 301
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=87.48 E-value=4.2 Score=32.76 Aligned_cols=62 Identities=26% Similarity=0.496 Sum_probs=43.7
Q ss_pred ceEEEeeCCcchHHHHHHHHhhhc--CCC------CcceEEEEC----Ce-ecCC-------------CCcccccCCCCC
Q 031706 87 KEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA----GK-QLAD-------------DKTARDYNIEGG 140 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~q~l~~~----g~-~L~d-------------~~~L~~~~i~~~ 140 (154)
..+.+.|-.++||.++|++|-+.. |.| ++++.|-|. |+ .|.| =+||+.|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 457888999999999999985322 444 455666652 22 2443 147999999999
Q ss_pred CEEEEEEe
Q 031706 141 SVLHLVLA 148 (154)
Q Consensus 141 ~~i~l~~~ 148 (154)
+++.++-+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99987644
No 302
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=87.31 E-value=2.6 Score=25.75 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=48.5
Q ss_pred EEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE---Ecce--EeecCccccccccccccceeeeeee
Q 031706 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 5 v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~---~~g~--~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
|=..+...+++.+..+.|+.+++..+.++.+...+.+.|. ++|. .|.++..--.-.+..+..+++..+.
T Consensus 14 Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 14 VYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp EECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred EEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 3345667788999999999999999999999877777776 4563 3454443333345556777666553
No 303
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=87.16 E-value=4.9 Score=32.32 Aligned_cols=64 Identities=22% Similarity=0.424 Sum_probs=44.3
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhc--CCC------CcceEEEEC----Ce-ecCC-------------CCcccccCCCC
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKE--GIP------PVQQRLIYA----GK-QLAD-------------DKTARDYNIEG 139 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~--gi~------~~~q~l~~~----g~-~L~d-------------~~~L~~~~i~~ 139 (154)
...+.+.|-.++||.++|++|-+.. |.| ++++.|-|. |+ .|.| =.||+.|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3568888999999999999985433 333 455666652 22 2332 14699999999
Q ss_pred CCEEEEEEee
Q 031706 140 GSVLHLVLAL 149 (154)
Q Consensus 140 ~~~i~l~~~~ 149 (154)
|+++.++-+.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999887554
No 304
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=86.56 E-value=1.2 Score=26.96 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=25.0
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCC
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIP 37 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 37 (154)
+..+.+-|+++.+..+|..+|.++.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 4578999999999999999999998865
No 305
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=86.50 E-value=0.28 Score=30.42 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=42.8
Q ss_pred CEEEEEeCC------CCEEEEEEcC----CCcHHHHHHHHHhHhCCCCCceEEEEc-c--e------EeecCccc-----
Q 031706 1 MQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIFA-G--K------QLEDGRTL----- 56 (154)
Q Consensus 1 m~v~v~~~~------g~~~~~~v~~----~~tV~~lK~~i~~~~~i~~~~q~L~~~-g--~------~L~d~~~L----- 56 (154)
|+|+|+... |+...++++. ..||.+|-+.+.+.. +..+..|+-. | . .|-++...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~g 82 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGG 82 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTS
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccCC
Confidence 556666554 3445666663 359999999988775 2223333322 2 1 23333322
Q ss_pred cccccccccceeeeeeeecce
Q 031706 57 ADYNIQKESTLHLVLRLRGGT 77 (154)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~~~~ 77 (154)
.+|.+++||+|.+.....++.
T Consensus 83 ldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 83 MDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SCCCCCSSCEEEEEECCCCC-
T ss_pred cccCCCCcCEEEEeCCCcccc
Confidence 347789999987766655543
No 306
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=85.37 E-value=0.79 Score=37.41 Aligned_cols=51 Identities=29% Similarity=0.562 Sum_probs=40.8
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc-eEeecCcccccc
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-KQLEDGRTLADY 59 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g-~~L~d~~~L~~~ 59 (154)
..+...+.+.++.|+.+++..|++.+|+|++.|.+++.+ ..+++......+
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 345567889999999999999999999999999999864 455555555543
No 307
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=84.38 E-value=4.5 Score=23.71 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=28.3
Q ss_pred CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE
Q 031706 9 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (154)
Q Consensus 9 ~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 44 (154)
++..+.+.++++.+..+|+.+|..+..+. ...++
T Consensus 20 ~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 20 KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 45789999999999999999999999883 44444
No 308
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=83.92 E-value=3.4 Score=30.78 Aligned_cols=53 Identities=25% Similarity=0.289 Sum_probs=41.2
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe--ecCCCCcccccCC
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK--QLADDKTARDYNI 137 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~--~L~d~~~L~~~~i 137 (154)
......+.+.+..|+.++++.+++.++++++.|.+.+.+. .++.+.....|.-
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~ 374 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 374 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCC
Confidence 3455678889999999999999999999999999998873 3344455555543
No 309
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=83.52 E-value=6 Score=24.48 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=38.5
Q ss_pred eEEEeeCC---cchHHHHHHHHhhhcC-CC---------Cc-ceEEEECCeecCCCCcc--cccCCCCCCEEEEEEeecC
Q 031706 88 EIEIDIEP---TDTIERIKERVEEKEG-IP---------PV-QQRLIYAGKQLADDKTA--RDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 88 ~~~~~v~~---~~tV~~LK~~i~~~~g-i~---------~~-~q~l~~~g~~L~d~~~L--~~~~i~~~~~i~l~~~~~g 151 (154)
.+.++++. ..||.+|...+++.+. .. .. ...+..|++... .+ .++-+++|+.|.++=.+-|
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l~gldt~L~dGDeV~iip~vaG 107 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLGELDYQLQDQDSILFISTLHG 107 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH---HHCTTTCBCCSSEEEEEEECSCC
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee---ccCCcCcCCCCCCEEEEeCCCCC
Confidence 56688873 3699999999988761 11 11 123334554221 11 3577899999988766666
Q ss_pred C
Q 031706 152 G 152 (154)
Q Consensus 152 g 152 (154)
|
T Consensus 108 G 108 (114)
T 1wgk_A 108 G 108 (114)
T ss_dssp C
T ss_pred C
Confidence 6
No 310
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=83.36 E-value=4.9 Score=23.39 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=47.1
Q ss_pred EEeeCCcchHHHHHHHHhhhc-C--C---CCcceEEEECC--eecCCCCcccccCCCCCCEEEEEEe
Q 031706 90 EIDIEPTDTIERIKERVEEKE-G--I---PPVQQRLIYAG--KQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~-g--i---~~~~q~l~~~g--~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
-+.|+..+|..++-++++... | + |-.-.+..++| +.+..+.|+++-||.+-..|.+.+.
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 367889999999999986443 3 3 22246777888 8899999999999999999998764
No 311
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=83.27 E-value=4.8 Score=23.28 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=36.6
Q ss_pred EEEEcCCCcHHHHHHHHHhHhC------C-----CCCceEEEEcceEeecCccccccccccccceeeeeee
Q 031706 14 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~~------i-----~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 73 (154)
.++++...||.+|.+.+..... + ......+..||+..... .-.+..+++|++|.+....
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~-~~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM-KGLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT-CSSSCBCCTTCEEEEECCT
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc-CCCCcCCCCCCEEEEeCCC
Confidence 3456667899999999977631 0 01334566777655422 1234568899998776543
No 312
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=83.00 E-value=6.5 Score=24.52 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=45.8
Q ss_pred EEEEEEcCCCcHHHHHHHHHhH--------hCCCCCceEEEEcceEee--cCccccccccccccceeee
Q 031706 12 TITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLV 70 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~--------~~i~~~~q~L~~~g~~L~--d~~~L~~~~i~~~~~i~l~ 70 (154)
.+.+-++|+++.++|-+.+-.. ..|.-+.-.+..+|+... .+++|++.|+...+.|.+.
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 4778999999999998887533 234555567888999874 4679999999999988655
No 313
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=81.64 E-value=6.5 Score=24.88 Aligned_cols=58 Identities=26% Similarity=0.388 Sum_probs=39.1
Q ss_pred EEEEcC----CCcHHHHHHHHHhHhCCCC-------CceEEEEcceEeec--Cccccccccccccceeeeee
Q 031706 14 TLEVES----SDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 14 ~~~v~~----~~tV~~lK~~i~~~~~i~~-------~~q~L~~~g~~L~d--~~~L~~~~i~~~~~i~l~~~ 72 (154)
.+.|++ ..|.++|-+.+..+.|.+. +.++|+|.--. +| +++|++.|+++|+.+.+.-.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~Df-DDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDF-EDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTB-CTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCc-cccccCcHHHcCcCCCcEEEEEcc
Confidence 355553 4799999988988888763 12344443211 22 46899999999999877754
No 314
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=81.24 E-value=5.3 Score=28.91 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=39.2
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc-------ceEeecCcccc
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA 57 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-------g~~L~d~~~L~ 57 (154)
|.|-..+|....+.|++++|+.||-+.+..+.+.+...-.-++. -+.|+|...+.
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~ 95 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLV 95 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHH
Confidence 55666789999999999999999999988888765443333332 15566665543
No 315
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=81.03 E-value=2.3 Score=25.67 Aligned_cols=59 Identities=12% Similarity=0.284 Sum_probs=40.5
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCC---c--------ceEEEECC-eecC------CCCcccccCCCCCCEEEEE
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPP---V--------QQRLIYAG-KQLA------DDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~---~--------~q~l~~~g-~~L~------d~~~L~~~~i~~~~~i~l~ 146 (154)
...++++++.|..+|-+.+++.-.+.. + .-.|++.+ ..|+ =+++|.+.|+.+|..|+|.
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 456789999999999999988543221 1 33444333 1222 2567999999999998875
No 316
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=81.01 E-value=7.9 Score=24.15 Aligned_cols=60 Identities=10% Similarity=0.219 Sum_probs=47.7
Q ss_pred ceEEEeeCCcchHHHHHHHHh-hhcC-------CCCcceEEEECCeecC--CCCcccccCCCCCCEEEEE
Q 031706 87 KEIEIDIEPTDTIERIKERVE-EKEG-------IPPVQQRLIYAGKQLA--DDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~-~~~g-------i~~~~q~l~~~g~~L~--d~~~L~~~~i~~~~~i~l~ 146 (154)
..+.+.+++..+.++|-+.+- ..++ |+-+..+|..+|+... .+++|.+.|+.-.|.|.+.
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 457899999999999988763 3333 5666778999999875 6889999999999887654
No 317
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=80.73 E-value=7.2 Score=23.50 Aligned_cols=60 Identities=13% Similarity=0.274 Sum_probs=40.7
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCC---CC--------ceEEEEcc-eEee------cCccccccccccccceeeee
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIP---PD--------QQRLIFAG-KQLE------DGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~---~~--------~q~L~~~g-~~L~------d~~~L~~~~i~~~~~i~l~~ 71 (154)
...+++++++|+.+|-+.+.+.-... |+ ...|++.+ ..|+ -+++|.++|+.+|+.|++.-
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 45789999999999999998843322 11 34455443 1222 24569999999999887753
No 318
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=79.42 E-value=4.7 Score=24.25 Aligned_cols=57 Identities=5% Similarity=0.056 Sum_probs=40.5
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhH---hCCCCCceEEEEcceEeecCccccccccccccceeeeee
Q 031706 11 KTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~---~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
..+.+++..++||.++-++..-. ..+..+...+..+|+... .+.-+++|++|.+.-.
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRP 85 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEec
Confidence 45678899999999998887532 234444567777887765 4555788999877643
No 319
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=79.39 E-value=7.8 Score=23.10 Aligned_cols=70 Identities=10% Similarity=0.216 Sum_probs=40.4
Q ss_pred CEEEEEeCC------C-CEEEEEEcCCCcHHHHHHHHHhHhC-CCC-----C----ce-------EEEEcceEeecCccc
Q 031706 1 MQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-IPP-----D----QQ-------RLIFAGKQLEDGRTL 56 (154)
Q Consensus 1 m~v~v~~~~------g-~~~~~~v~~~~tV~~lK~~i~~~~~-i~~-----~----~q-------~L~~~g~~L~d~~~L 56 (154)
|+|+|+... | +.. +++ ..||.+|.+.+..... ... . .. .+..||+..... .-
T Consensus 4 m~v~V~~fa~lr~~~g~~~~--~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~ 79 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPEL--PLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EG 79 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEE--EEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TS
T ss_pred eEEEEEEeHHHHHHhCCCeE--EEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CC
Confidence 567777553 2 334 444 6899999999977631 111 0 12 455666554322 12
Q ss_pred cccccccccceeeeeeee
Q 031706 57 ADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 57 ~~~~i~~~~~i~l~~~~~ 74 (154)
.++-+++|++|.+.....
T Consensus 80 ~~~~L~~gD~V~i~ppv~ 97 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVS 97 (99)
T ss_dssp TTSCCCTTEEEEEECCCS
T ss_pred CCCCCCCCCEEEEECCCC
Confidence 344678899987765443
No 320
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=78.87 E-value=6.1 Score=24.29 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=27.6
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHh
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~ 34 (154)
|.+-.++|-.+.++++.++|+.++|+.+.++.
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA 53 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEA 53 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHH
Confidence 45566799999999999999999999998774
No 321
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=78.60 E-value=2.9 Score=34.11 Aligned_cols=51 Identities=20% Similarity=0.429 Sum_probs=40.5
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECC-eecCCCCccccc
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAG-KQLADDKTARDY 135 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g-~~L~d~~~L~~~ 135 (154)
..+...+.+.+..|+.+++..|++.+|+|++.|.+++.. -.+........|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 455567889999999999999999999999999999654 455555554443
No 322
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=77.53 E-value=8.2 Score=22.33 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=53.8
Q ss_pred EEEeeCCcchHHHHHHHHhhhcCCCCcceEEEE-CCeecCCCCcccccCCCCCCEEEEEEeecCCC
Q 031706 89 IEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY-AGKQLADDKTARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 89 ~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~-~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
..+.|++......+-+-.++.+++|+....++. .|.-++..++-...-++.|+.+.++=|-|=|.
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG~ 91 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVGS 91 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSCC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEecccccccC
Confidence 447788888888888888999999998887774 46668888888888889999999998887664
No 323
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=77.25 E-value=8.5 Score=22.40 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=46.7
Q ss_pred EEeeCCcchHHHHHHHHhhhc-C--CC--CcceEEEECCee--cCCCCcccccCCCCCCEEEEEE
Q 031706 90 EIDIEPTDTIERIKERVEEKE-G--IP--PVQQRLIYAGKQ--LADDKTARDYNIEGGSVLHLVL 147 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~-g--i~--~~~q~l~~~g~~--L~d~~~L~~~~i~~~~~i~l~~ 147 (154)
-+.|+..+|..++-++++... | ++ +.-.+..++|.. +..+.++++-|+++-+.|.++.
T Consensus 18 Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 18 LVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 467888999999999886443 3 22 235677899987 9999999999999999999876
No 324
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=77.09 E-value=9.7 Score=22.97 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=54.0
Q ss_pred EEEEEeCCC---CEEEEEEcCCCcHHHHHHHHHhHhCCCC--CceEEEEcc---eEeecCccccccccccccceeeeee
Q 031706 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 2 ~v~v~~~~g---~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~~g---~~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
.|+|...+. ...+++|..+.-|+.+..++-++..++. ++--|.+.. ..+....+|..||++.++.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 577777554 5588999999999999999988877654 345565543 3457778999999999999877653
No 325
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=77.02 E-value=2.5 Score=25.94 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=48.9
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCC--CCcceEEEECCe---ecCCCCcccccCCCCCCEEEE
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI--PPVQQRLIYAGK---QLADDKTARDYNIEGGSVLHL 145 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi--~~~~q~l~~~g~---~L~d~~~L~~~~i~~~~~i~l 145 (154)
.|+|...+ ...++.|....-|+.+-.++-+...+ .-++..|-+..+ .+.-..+|..|||+.++.+++
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~f 99 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQF 99 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCB
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceecccccee
Confidence 34444433 66778888888999999999877765 345556665444 577889999999999887654
No 326
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=76.24 E-value=7.6 Score=24.56 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=34.8
Q ss_pred cchHHHHHHHHhhhcCCCC-------cceEEEECCe-ecCCCCcccccCCCCCCEEEEE
Q 031706 96 TDTIERIKERVEEKEGIPP-------VQQRLIYAGK-QLADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~-------~~q~l~~~g~-~L~d~~~L~~~~i~~~~~i~l~ 146 (154)
..|..+|-+.+..++|..- ..++|+|.-- .=.-.++|++.|+++|+.|.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQDISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 3588888888888888642 1345554322 1123689999999999988775
No 327
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=75.94 E-value=7.4 Score=23.20 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=33.0
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE-EEEcce
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g~ 48 (154)
...+.+.|++.++=.++|+++++.+++.+..-. +...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 367999999999999999999999999987754 446565
No 328
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=75.03 E-value=8.5 Score=24.10 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=43.2
Q ss_pred EeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCc------ceEEE---ECCe--ecCCCCcccccCCCCCCEEEEEEe
Q 031706 81 VKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPV------QQRLI---YAGK--QLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 81 v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~------~q~l~---~~g~--~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
|...+....++.++.+.|+.+++..++.+.+..-+ .+.|. ++|. .++++..--.-.+..+..|++..+
T Consensus 14 VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 14 VYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp EECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred EEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33445556667888889999999999999986433 66665 5675 344433322223445566666544
No 329
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=74.99 E-value=5.9 Score=31.29 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=38.0
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC--CceEEEE
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 45 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~--~~q~L~~ 45 (154)
+.+.|..++|....+.++..+|+.++-+.|.++.|+.. +..-|++
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 35788889999999999999999999999999999974 3445554
No 330
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=74.77 E-value=7.3 Score=27.75 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=36.0
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc-------ceEeecCcccc
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLA 57 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-------g~~L~d~~~L~ 57 (154)
|.|-..+|....+.|++++|+.+|-+.+..+.+++.+.-.-++. -+.|+|...+-
T Consensus 11 vkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V~ 72 (256)
T 3hk0_A 11 VKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELVV 72 (256)
T ss_dssp EEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBHH
T ss_pred EEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhHH
Confidence 55667789999999999999999999998877655433333332 25566666543
No 331
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=74.00 E-value=8.5 Score=23.08 Aligned_cols=58 Identities=7% Similarity=0.026 Sum_probs=41.4
Q ss_pred ceEEEeeCCcchHHHHHHHHhh---hcCCCCcceEEEECCeecCCCCcccccCCCCCCEEEEEEee
Q 031706 87 KEIEIDIEPTDTIERIKERVEE---KEGIPPVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~---~~gi~~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
....+++.+..||.++-+...- ...+..+...+..+|+... .++-+++|+.|.++-.+
T Consensus 26 ~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 26 YLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEECCCC
T ss_pred EEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEEecc
Confidence 3456788889999999887642 2245555677778888776 45568899999886543
No 332
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=73.39 E-value=11 Score=21.63 Aligned_cols=61 Identities=16% Similarity=0.267 Sum_probs=40.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeee
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
+|+|.+++|.. ++++...|+.|+=.+|....+-.. .--..+|+..+- ++.+++|++|.+.-
T Consensus 7 ~i~v~tP~G~~--~~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L-----~~~L~~gd~VeIit 67 (78)
T 3hvz_A 7 EVFVFTPKGDV--ISLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI-----DYKVKTGEIIDVLT 67 (78)
T ss_dssp EEEEECTTSCE--EEEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT-----TCBCCTTCBEEEEE
T ss_pred eEEEECCCCCE--EEecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC-----CcccCCCCEEEEEc
Confidence 57888999975 567889999999888865543111 112346665543 34567788886653
No 333
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=72.53 E-value=6.5 Score=23.04 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
...+.+.|++..|=.++|+++++.+++.+..-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 457999999999999999999999999886554
No 334
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=72.00 E-value=8.3 Score=24.15 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=44.2
Q ss_pred eCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCC------ceEEE---Ecce--EeecCccccccccccccceeeeee
Q 031706 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 72 (154)
Q Consensus 7 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~------~q~L~---~~g~--~L~d~~~L~~~~i~~~~~i~l~~~ 72 (154)
..+...+++.+..+.|+.+++..+.++.+...+ .+.|. ++|. .|.++..--.-.+.-+..+++..+
T Consensus 16 ~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfvc~k 92 (120)
T 2dhz_A 16 MPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTR 92 (120)
T ss_dssp CTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEEECT
T ss_pred eccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 345566788999999999999999999987544 66665 4563 345444322333455667766654
No 335
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=70.77 E-value=8.1 Score=23.13 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=30.2
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceE-EEEcce
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 48 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g~ 48 (154)
+.+.|+++.|=.++|+++++.+++.+..-. +...|+
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 899999999999999999999999987654 334443
No 336
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=70.10 E-value=10 Score=22.51 Aligned_cols=56 Identities=7% Similarity=0.183 Sum_probs=36.1
Q ss_pred cchHHHHHHHHhhhcC-CCC---------cce-------EEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 96 TDTIERIKERVEEKEG-IPP---------VQQ-------RLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~g-i~~---------~~q-------~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..||.+|.+.+..... +.. ... .+..||+..... .-.+.-+++|++|.++=..-||
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~-~~~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL-EGLETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT-TSTTSCCCTTEEEEEECCCSCC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc-CCCCCCCCCCCEEEEECCCCCC
Confidence 5799999999977642 111 023 566788765322 1234568899999887666665
No 337
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=69.85 E-value=9.9 Score=27.07 Aligned_cols=36 Identities=17% Similarity=0.060 Sum_probs=28.8
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCC
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~ 113 (154)
.+.|...+|....+.|+++.|+++|-+.+..+.+++
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~ 45 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSV 45 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC---
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCC
Confidence 456667789999999999999999999998877754
No 338
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=69.70 E-value=16 Score=25.73 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=33.0
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCce
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 41 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q 41 (154)
|.|-..+|....+.|+++.|..++-+.+..+.+++.+..
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~ 75 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVD 75 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTT
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCC
Confidence 556677889999999999999999999999999765443
No 339
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=69.47 E-value=5.4 Score=22.92 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=28.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCC-----CCceEEEEcc
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 47 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~-----~~~q~L~~~g 47 (154)
.+++.|+++.+..+|..+|.++.+.. ....+|.|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 57899999999999999999999865 2445566643
No 340
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.45 E-value=9.9 Score=22.56 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=34.4
Q ss_pred chHHHHHHHHhhhcCCCCcceEEEE--CCeecCCCCcccccCCCCCCEEEEEEe
Q 031706 97 DTIERIKERVEEKEGIPPVQQRLIY--AGKQLADDKTARDYNIEGGSVLHLVLA 148 (154)
Q Consensus 97 ~tV~~LK~~i~~~~gi~~~~q~l~~--~g~~L~d~~~L~~~~i~~~~~i~l~~~ 148 (154)
.+..+|+.+.+...+++....+|.. .|.+++|+.-+..+ +..++.|++.
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
Confidence 4789999999999999766666664 58888776544433 3556555543
No 341
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=68.38 E-value=9.2 Score=31.08 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=37.8
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCC-CceEEEE
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 45 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~ 45 (154)
|.+.|..++|....+.++..+|+.++-+.|..+.|+.. +..-|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 45788899999999999999999999999999999653 4455555
No 342
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.37 E-value=9.4 Score=22.40 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.2
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
...+.+.|++..+=.++|+++++.+++.+..-.
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VN 55 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVN 55 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEE
Confidence 467999999999999999999999999876554
No 343
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=66.78 E-value=17 Score=21.46 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=19.3
Q ss_pred CEEEEEEc--CCCcHHHHHHHHHhHh
Q 031706 11 KTITLEVE--SSDTIDNVKAKIQDKE 34 (154)
Q Consensus 11 ~~~~~~v~--~~~tV~~lK~~i~~~~ 34 (154)
+...++++ ...||.+|.+.+.+..
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 45667776 6789999999998775
No 344
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=66.63 E-value=19 Score=23.84 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=40.7
Q ss_pred EeeCCcchHHHHHHHHhhhcC-CC---------CcceEEEECCeecCCCCcccccCCCCCCEEEEEEeecCC
Q 031706 91 IDIEPTDTIERIKERVEEKEG-IP---------PVQQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 91 ~~v~~~~tV~~LK~~i~~~~g-i~---------~~~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
++++. .||.+|.+.+...+. +. .....+..||+...... -.+.-+++|+.|.++=..-||
T Consensus 18 ~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~-~~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 18 LELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQ-GLSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp EECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTT-GGGCBCCTTCEEEEECSCCSE
T ss_pred EEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcC-CCccCCCCCCEEEEECccccc
Confidence 45555 899999999976642 10 23456678888765422 234578999999888777776
No 345
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=65.95 E-value=8.4 Score=23.22 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=30.0
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCC-----cceEEEECCe
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPP-----VQQRLIYAGK 124 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~-----~~q~l~~~g~ 124 (154)
+..+.+.|+++.+..+|..+|.++.+++. ...++.|+..
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDE 65 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE 65 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECS
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcC
Confidence 44678899999999999999999998642 2246777654
No 346
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=65.94 E-value=10 Score=29.88 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=38.5
Q ss_pred ceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCC--cceEEEE
Q 031706 76 GTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPP--VQQRLIY 121 (154)
Q Consensus 76 ~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~--~~q~l~~ 121 (154)
.+.+.|..++|....+.++++.|+.+|-..|+.+.|+.. +..-|..
T Consensus 216 ~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 216 EMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 466778888999999999999999999999999999963 3455553
No 347
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=65.82 E-value=18 Score=21.36 Aligned_cols=65 Identities=14% Similarity=0.234 Sum_probs=39.2
Q ss_pred ceEEEeeC--CcchHHHHHHHHhhhcCCC-C--------c----ceEEEECCeecCCCCcccccCCCCCCEEEEEEeecC
Q 031706 87 KEIEIDIE--PTDTIERIKERVEEKEGIP-P--------V----QQRLIYAGKQLADDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 87 ~~~~~~v~--~~~tV~~LK~~i~~~~gi~-~--------~----~q~l~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
+...++++ +..||++|.+.+.++..-. . . ...+..|++...-.. =.++-+++|++|.++=..-|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~-~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEG-EKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGT-GGGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccC-CCCcCcCCCCEEEEECCCCC
Confidence 44566666 5689999999998776311 1 1 112345555321000 13557899999988766666
Q ss_pred C
Q 031706 152 G 152 (154)
Q Consensus 152 g 152 (154)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 348
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=65.74 E-value=9.8 Score=22.62 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE-EEEcceE
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 49 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g~~ 49 (154)
..+.+.|++.+|=.++|+++++.+++.+..-. +...|+.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 67999999999999999999999999887654 4455653
No 349
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=63.18 E-value=14 Score=26.68 Aligned_cols=36 Identities=11% Similarity=0.248 Sum_probs=30.6
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCC
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP 113 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~ 113 (154)
.+.|...+|....+.|++++|+++|-+.+..+.+.+
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~ 68 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCG 68 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCC
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence 455667788899999999999999999998888764
No 350
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=62.74 E-value=21 Score=28.96 Aligned_cols=47 Identities=13% Similarity=0.158 Sum_probs=38.9
Q ss_pred cceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCC-CcceEEEE
Q 031706 75 GGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIY 121 (154)
Q Consensus 75 ~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~-~~~q~l~~ 121 (154)
..+.+.|..++|....+.++++.|+.++-..|+.+.|+. .+..-|.+
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 346778889999999999999999999999999999974 44455544
No 351
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=61.96 E-value=22 Score=22.50 Aligned_cols=59 Identities=8% Similarity=0.135 Sum_probs=39.2
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCeecC-CCCcccccC---CCCCCEEEEEEe
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQLA-DDKTARDYN---IEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~L~-d~~~L~~~~---i~~~~~i~l~~~ 148 (154)
.+-|+.+.||+++...|.++.++++++--++ |.+..+. .+.++++.- -.++.-+||...
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 119 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYA 119 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCCEEEEEEe
Confidence 4568899999999999999999988776555 6555443 445554431 123445665543
No 352
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=61.82 E-value=16 Score=22.76 Aligned_cols=59 Identities=7% Similarity=0.050 Sum_probs=39.7
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcc-eEEEECCeecCCCCcccccC---CCCCCEEEEEEe
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQ-QRLIYAGKQLADDKTARDYN---IEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~-q~l~~~g~~L~d~~~L~~~~---i~~~~~i~l~~~ 148 (154)
.+-|+.+.||+++...|..+.++++++ ..|..++.....+.++++.- -.++.-+||...
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Ys 113 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKYS 113 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 356889999999999999999997776 45556776444555554432 123445555543
No 353
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=61.65 E-value=23 Score=21.04 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCee
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGKQ 125 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~~ 125 (154)
....+.+.|++..+=.++|+.++..+++.+...+-. ..|+.
T Consensus 26 ~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 26 KSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 346889999999999999999999999999888654 66653
No 354
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=61.61 E-value=22 Score=20.83 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=27.9
Q ss_pred EEEEeCCCC-EEEEEEc-CCCcHHHHHHHHHhHhCCCCCceEE
Q 031706 3 IFVKTLTGK-TITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRL 43 (154)
Q Consensus 3 v~v~~~~g~-~~~~~v~-~~~tV~~lK~~i~~~~~i~~~~q~L 43 (154)
|+-|..+.+ .-++.++ ...+|.+||..|-.+.+.-..+--|
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL 51 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDL 51 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccE
Confidence 566666553 3457776 4579999999998887764444443
No 355
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=61.39 E-value=21 Score=20.68 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=46.8
Q ss_pred EEEEEcCCCcHHHHHHHHHhHh-C--C---CCCceEEEEcc--eEeecCccccccccccccceeeee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~-~--i---~~~~q~L~~~g--~~L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
.-+.|+.++|..++=+++.... | + |....+..++| +.+..+.++++-||.+-+.|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 4578999999999999997553 3 2 22246777888 899999999999999988887654
No 356
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=60.50 E-value=23 Score=20.73 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=24.4
Q ss_pred eEEEeeCC-cchHHHHHHHHhhhcCCCCcceEEE
Q 031706 88 EIEIDIEP-TDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 88 ~~~~~v~~-~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
...+.++. .-+|.+||..|..+.++-..+..|.
T Consensus 19 ~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 19 YDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred cceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 34567766 5699999999988888755566555
No 357
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=59.36 E-value=24 Score=20.52 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=46.9
Q ss_pred EEEEEcCCCcHHHHHHHHHhHh-CC--C--CCceEEEEcceE--eecCccccccccccccceeeee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKE-GI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~-~i--~--~~~q~L~~~g~~--L~d~~~L~~~~i~~~~~i~l~~ 71 (154)
.-+.|+.++|..++-+++.... |. + |...+..++|.. +.++.++++-|+++-+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 4578999999999999997553 42 1 235678889977 9999999999999988887654
No 358
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=58.87 E-value=27 Score=21.02 Aligned_cols=80 Identities=14% Similarity=0.253 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeC-CcchHHH
Q 031706 23 IDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIE-PTDTIER 101 (154)
Q Consensus 23 V~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~-~~~tV~~ 101 (154)
..++-+.+.+..|.|++.+.+... ++..+. ++ |. ......+.|+...|.+ .. ...-+..
T Consensus 20 ~~~~~~~l~~~lgkp~~~~~v~~~-----~~~~~~-~~---g~-------~~~~~~v~i~~~~g~t----~eqk~~l~~~ 79 (115)
T 2xcz_A 20 LQELSSKLAELLGKPEKYVMTSLQ-----CGVPMT-FS---GN-------TEPTCYVEVKSIGALD----GSRTQEVSEL 79 (115)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEE-----CSCCCC-BT---TB-------CSSCEEEEEEESSCCC----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHEEEEEE-----CCCceE-EC---CC-------CCcEEEEEEEEecCCC----HHHHHHHHHH
Confidence 444555566778999997776542 221111 11 11 1122334444433322 11 1235677
Q ss_pred HHHHHhhhcCCCCcceEEEEC
Q 031706 102 IKERVEEKEGIPPVQQRLIYA 122 (154)
Q Consensus 102 LK~~i~~~~gi~~~~q~l~~~ 122 (154)
+-+.+++..|+|+++..+.+.
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~ 100 (115)
T 2xcz_A 80 VCGHIEQNLGIPADRIYIGFE 100 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHhCcCcccEEEEEE
Confidence 777788889999999888764
No 359
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=57.86 E-value=25 Score=21.85 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=32.3
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCCceEEEE-cceEeecCccccc
Q 031706 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 58 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~L~~ 58 (154)
+-|+.+.||+++...|.+...++++.--++| ++.....+.++++
T Consensus 52 flVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 52 FLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 5688999999999999999999887654444 5553344445544
No 360
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=57.74 E-value=18 Score=22.83 Aligned_cols=59 Identities=7% Similarity=0.027 Sum_probs=38.6
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcce-EEEECCeecCCCCcccccC---CCCCCEEEEEEe
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIYAGKQLADDKTARDYN---IEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q-~l~~~g~~L~d~~~L~~~~---i~~~~~i~l~~~ 148 (154)
.+-|+.+.||+++...|.++..+++++- .|..++.....+.++++.- -.++.-+||...
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 3568899999999999999999977764 4445654334455555432 123445555543
No 361
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=57.58 E-value=18 Score=25.53 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=32.7
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcc
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQ 116 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~ 116 (154)
+.+.|...+|.+..+.|+++.|+.++-+.+..+.+++.+.
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 3455566788888999999999999999999999876543
No 362
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=56.02 E-value=25 Score=26.62 Aligned_cols=52 Identities=12% Similarity=0.073 Sum_probs=38.1
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHHH--hHhCCC---CCceEEEEc----c--eEeecCcccccc
Q 031706 8 LTGKTITLEVESSDTIDNVKAKIQ--DKEGIP---PDQQRLIFA----G--KQLEDGRTLADY 59 (154)
Q Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i~--~~~~i~---~~~q~L~~~----g--~~L~d~~~L~~~ 59 (154)
++|....+.++.++||.++-..|. .+.|+. ++..-|.+. + .+|+++.++.+-
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 678888999999999999999998 566753 334455442 2 567777777663
No 363
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=55.98 E-value=28 Score=20.31 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=32.2
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCe
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~ 124 (154)
|.|.+.- .+-.+.+.++.+-+..+|+.+|+++..+. .+.+. |++.
T Consensus 13 ~KVK~yy-~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~~ykde 58 (85)
T 1ip9_A 13 TKIKFYY-KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQTKLFD 58 (85)
T ss_dssp EEEEECB-TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEEECCSS
T ss_pred eEEEEEe-cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEEEecCC
Confidence 4444433 34578899999999999999999999883 44444 4443
No 364
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=55.27 E-value=28 Score=20.62 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=33.1
Q ss_pred ceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCe
Q 031706 87 KEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 87 ~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~ 124 (154)
..+.+.|+...+=.++|+.++..+++.+...+-. ..|+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 7889999999999999999999999998887554 5654
No 365
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=55.18 E-value=14 Score=20.65 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=20.4
Q ss_pred ccccccccccccceeeeeeeecceeeEEee
Q 031706 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKT 83 (154)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~ 83 (154)
+.|.+.|+.+|+.|.+.-+.+.+ ++.++.
T Consensus 29 ~rL~~lGi~~G~~v~v~~~~p~g-p~~v~v 57 (77)
T 3e19_A 29 QKLVSMGLTPGATIQVLESHPMG-PIIISV 57 (77)
T ss_dssp HHHHTTTCSTTCEEEEEEC--CC-CEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEecCCC-CEEEEE
Confidence 46889999999999888765444 555554
No 366
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=55.01 E-value=24 Score=21.30 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=29.1
Q ss_pred cchHHHHHHHHhhhcCCCCc--ceEEE--ECCeecCCCCccccc
Q 031706 96 TDTIERIKERVEEKEGIPPV--QQRLI--YAGKQLADDKTARDY 135 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~~--~q~l~--~~g~~L~d~~~L~~~ 135 (154)
..+..+|+.+.+...+++.. ..+|. ..|..++|+.-+...
T Consensus 36 A~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL 79 (100)
T 1f2r_I 36 ASSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL 79 (100)
T ss_dssp ESSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS
T ss_pred cCCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC
Confidence 34889999999999999764 35555 468888776554433
No 367
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=54.64 E-value=26 Score=20.63 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=37.7
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcce-EEEECCeec-CCCCcccc----cCCCCCCEEEEEE
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIYAGKQL-ADDKTARD----YNIEGGSVLHLVL 147 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q-~l~~~g~~L-~d~~~L~~----~~i~~~~~i~l~~ 147 (154)
.+.|+.+.|++++..-|.++.++++++- .+..++.-+ ..+.++++ |+ .+..+++..
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLyv~Y 84 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKLVLHY 84 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEEEEEE
Confidence 4678899999999999999999977654 555566543 33444433 33 455666544
No 368
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=54.61 E-value=18 Score=21.61 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=23.6
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
+|++...+|...++++.++.|+.+.-.+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 6888889999999999999999875433
No 369
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=53.58 E-value=25 Score=21.55 Aligned_cols=60 Identities=8% Similarity=0.138 Sum_probs=38.9
Q ss_pred eeEEeecCCceEEEeeCCcchHHHHHHHHhhhcC--------CCCcceEEEE-CC--e--ecC-CCCcccccCC
Q 031706 78 MIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEG--------IPPVQQRLIY-AG--K--QLA-DDKTARDYNI 137 (154)
Q Consensus 78 ~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~g--------i~~~~q~l~~-~g--~--~L~-d~~~L~~~~i 137 (154)
.+.+=.++|-.+.++++.+.|+.++|+.+.+.-+ -.++.+.+.. +. . ++. +++.|.+...
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~p 94 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRL 94 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCB
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEeccc
Confidence 3444456777788889999999999999855421 2566666653 32 2 454 4466766543
No 370
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=53.56 E-value=17 Score=21.06 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhH
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~ 33 (154)
+.+...+|-+|.++|+.+.-+..-|..++..
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~erm 69 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERM 69 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4567789999999999999888888887754
No 371
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=52.70 E-value=35 Score=20.45 Aligned_cols=84 Identities=6% Similarity=0.128 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchH
Q 031706 20 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTI 99 (154)
Q Consensus 20 ~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV 99 (154)
..-..++-+.+.+..|.|++.+.+.+.. +..+ .++-.. .....+.|+...|.+.. ....-+
T Consensus 17 ~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~-~~~g~~----------~~~~~v~i~~~~g~~~e---qk~~l~ 77 (115)
T 1uiz_A 17 DTLLSDLTKQLAKATGKPAEYIAIHIVP-----DQIM-SFGDST----------DPCAVCSLCSIGKIGGP---QNKSYT 77 (115)
T ss_dssp TTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEE-EETTBC----------SSCEEEEEEESSCCSHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHCcChhHEEEEEEC-----Ccce-EECCCC----------CCeEEEEEEEecCCCHH---HHHHHH
Confidence 3446778888889999999987766532 1111 011011 11223344443332200 012345
Q ss_pred HHHHHHHhhhcCCCCcceEEEEC
Q 031706 100 ERIKERVEEKEGIPPVQQRLIYA 122 (154)
Q Consensus 100 ~~LK~~i~~~~gi~~~~q~l~~~ 122 (154)
..+-+.+++..|+|+++..+.+.
T Consensus 78 ~~i~~~l~~~lgi~~~~v~I~~~ 100 (115)
T 1uiz_A 78 KLLCDILTKQLNIPANRVYINYY 100 (115)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHhCcCcceEEEEEE
Confidence 66677778889999999888764
No 372
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=52.69 E-value=42 Score=21.41 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=48.0
Q ss_pred ecCCceE-EEeeCCcchHHHHHHHHhhhcCCC---CcceEEE---ECCeecC-CCCcccccCCCCCCEEEEEEeecCC
Q 031706 83 TLTGKEI-EIDIEPTDTIERIKERVEEKEGIP---PVQQRLI---YAGKQLA-DDKTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 83 ~~~g~~~-~~~v~~~~tV~~LK~~i~~~~gi~---~~~q~l~---~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
..+|..+ .+.+...+....+-+..-++.+++ ++++.|+ -.|++|. .++.=-.|.+.+.....+++|.+++
T Consensus 34 ~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR~k~~ 111 (140)
T 3kh0_A 34 VDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKKRTF 111 (140)
T ss_dssp CSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEEECCC
T ss_pred cCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEeecCC
Confidence 3456554 477888887777777777777764 4455554 4688764 4445556777777888899998876
No 373
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=52.56 E-value=41 Score=21.23 Aligned_cols=45 Identities=9% Similarity=0.209 Sum_probs=33.7
Q ss_pred EEEEcCCCcHHHHHHHHHhHhCCCCCceEEE-EcceEe-ecCccccc
Q 031706 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLAD 58 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~-~~g~~L-~d~~~L~~ 58 (154)
.+-|+.+.||+++...|.++.+++++.--.+ |.+..+ ..+.++++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
Confidence 3568899999999999999999999776655 666544 34445544
No 374
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=52.48 E-value=36 Score=20.52 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=34.1
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
|.||.. .|+...+.++..-+..+|..++...+|-+. .|.|..
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~n 51 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYTN 51 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEECS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEec
Confidence 555554 678899999999999999999999998755 477763
No 375
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=51.93 E-value=28 Score=20.48 Aligned_cols=45 Identities=16% Similarity=0.161 Sum_probs=32.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE-cceEe-ecCcccc
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQL-EDGRTLA 57 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L-~d~~~L~ 57 (154)
-.+.|+.+.|++++..-|.++..++++.--.+| ++..+ ..+.+++
T Consensus 22 ~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~ 68 (91)
T 4gdk_A 22 KKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVG 68 (91)
T ss_dssp CEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHH
Confidence 357789999999999999999999887655555 44333 3344444
No 376
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=49.34 E-value=41 Score=20.33 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=45.1
Q ss_pred cCCceE-EEeeCCcchHHHHHHHHhhhcCCC---CcceEEE---ECCeecC-CCCcccccCCCCCCEEEEEEeecC
Q 031706 84 LTGKEI-EIDIEPTDTIERIKERVEEKEGIP---PVQQRLI---YAGKQLA-DDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 84 ~~g~~~-~~~v~~~~tV~~LK~~i~~~~gi~---~~~q~l~---~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
.+|..+ ++.+...+....+-.+.-++.+++ ++++.|. -.|++|. .++.=-.|.+.......+++|.+|
T Consensus 28 ~~g~~YKSIlltsqDrtp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNVFYAm~~~~~~~F~LR~k~ 103 (103)
T 1ef5_A 28 NNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYELVQVISEDKELVIPDSANVFYAMNSQVNFDFILRKKN 103 (103)
T ss_dssp CSSCCCCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEEEEECSSSCCEESSCCCCTTTTTCCCSCEEEEEEECC
T ss_pred CCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEEEEEcCCCCEEecCCCcceEEEEcCCCCccEEEeeCC
Confidence 344433 467777887777777777777763 4556665 3477654 444555677777788888888765
No 377
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=48.98 E-value=30 Score=20.56 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=31.9
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE-ECCe
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI-YAGK 124 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~-~~g~ 124 (154)
.+.+.|++..|=.++|+.++..+++.+...+-. ..|+
T Consensus 24 ~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 24 VYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 389999999999999999999999999888665 5553
No 378
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=48.68 E-value=43 Score=20.26 Aligned_cols=85 Identities=9% Similarity=0.225 Sum_probs=49.4
Q ss_pred CCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCCcch
Q 031706 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDT 98 (154)
Q Consensus 19 ~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~t 98 (154)
...-..++-+.+.+..|.|++.+.+.+.. +..+ .++-..+. ...+.|+...|.+.. ....-
T Consensus 16 ~~~l~~~~~~~l~~~lgkP~~~~~v~~~~-----~~~~-~~~g~~~~----------~~~i~I~~~~g~~~e---qk~~l 76 (119)
T 2os5_A 16 PANFEERLTDLLAESMNKPRNRIAIEVLA-----GQRI-THGASRNP----------VAVIKVESIGALSAD---DNIRH 76 (119)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEEC-----SCCC-CBTTBCSS----------CEEEEEEESSCCCHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHCcChHHEEEEEEC-----CccE-EEcCCCCC----------eEEEEEEEecCCCHH---HHHHH
Confidence 34457778888899999999988776632 1111 12211111 123344443432200 01234
Q ss_pred HHHHHHHHhhhcCCCCcceEEEEC
Q 031706 99 IERIKERVEEKEGIPPVQQRLIYA 122 (154)
Q Consensus 99 V~~LK~~i~~~~gi~~~~q~l~~~ 122 (154)
+..+-+.+++..|+|+++..+.+.
T Consensus 77 ~~~i~~~l~~~lgi~~~~v~I~~~ 100 (119)
T 2os5_A 77 TQKITQFCQDTLKLPKDKVIITYF 100 (119)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCcCcccEEEEEE
Confidence 566677778889999999888764
No 379
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=48.41 E-value=31 Score=21.00 Aligned_cols=46 Identities=7% Similarity=0.024 Sum_probs=32.4
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcce-EEEECCeecCCCCccccc
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIYAGKQLADDKTARDY 135 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q-~l~~~g~~L~d~~~L~~~ 135 (154)
.+-|+.+.||+++...|..+.++++++- .++.++.....+.++++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 4567788899999999999999977664 444555543445555543
No 380
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=48.27 E-value=26 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
..+.|.|++..+=.++|++|++.+++.+....
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVN 125 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVN 125 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEE
Confidence 57899999999999999999999999887654
No 381
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=47.13 E-value=41 Score=19.64 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=34.7
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEE
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 44 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~ 44 (154)
|.+..++++.-.++|-+..|+.+--.+.-+..++.++.=..+
T Consensus 10 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~Vy 51 (86)
T 1wxm_A 10 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVY 51 (86)
T ss_dssp EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 667778888889999999999999888889999887644333
No 382
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=46.53 E-value=31 Score=22.44 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
...+.|.|+...+=.++|+++++.+++.+....
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVN 119 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVN 119 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 467999999999999999999999999886554
No 383
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=46.17 E-value=22 Score=19.67 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=23.9
Q ss_pred ccccccccccccceeeeeeeecceeeEEeecCCceEEE
Q 031706 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (154)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~ 91 (154)
..|.+.|+.+|+.|.+.-+.+.+-++.++. +|..+.+
T Consensus 24 ~rL~~lGl~pG~~v~v~~~~p~~gpi~v~v-~~~~iaL 60 (75)
T 2gcx_A 24 QKLLSLGMLPGSSFHVVRVAPLGDPVHIET-RRVSLVL 60 (75)
T ss_dssp HHHTTTTCCSSEEEEECCCCSSCCEEEEEE-TTEEEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEEEc
Confidence 368899999999998876654333444444 4444444
No 384
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=45.57 E-value=51 Score=20.31 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=45.5
Q ss_pred cCCceE-EEeeCCcchHHHHHHHHhhhcCCC---CcceEEE---ECCeecC-CCCcccccCCCCCCEEEEEEeecC
Q 031706 84 LTGKEI-EIDIEPTDTIERIKERVEEKEGIP---PVQQRLI---YAGKQLA-DDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 84 ~~g~~~-~~~v~~~~tV~~LK~~i~~~~gi~---~~~q~l~---~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
.+|..+ .+.+...+....+-.+.-++.+++ ++++.|. -.|++|. .++.=-.|.+.....+.+++|.+|
T Consensus 38 ~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNVFYAm~~s~~~dFvLR~r~ 113 (115)
T 1rax_A 38 DNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKKRT 113 (115)
T ss_dssp SSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEEEECSSSCEEEECTTSCHHHHSCTTSCCEEEEEECC
T ss_pred CCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCeEecCCCcceEEEEcCCCCccEEEeecC
Confidence 455443 477878887788877777778775 5566665 3477664 344445667777788888888775
No 385
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=45.32 E-value=31 Score=20.57 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=20.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK 27 (154)
+|++...+|..+++++.+++|+.+.=
T Consensus 8 ~V~~~~~~g~~~~v~~~~g~tLL~aa 33 (108)
T 2bt6_A 8 TVHFINRDGETLTTKGKIGDSLLDVV 33 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHH
Confidence 56777678888899999999987643
No 386
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=45.13 E-value=21 Score=26.67 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=39.1
Q ss_pred EEeCCCC----EEEEEEcCCCcHHHHHHHHHhHhCCCC-CceEEEEc----c--eEeecCccccc
Q 031706 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFA----G--KQLEDGRTLAD 58 (154)
Q Consensus 5 v~~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~~----g--~~L~d~~~L~~ 58 (154)
|...+|. ...+.+++++|+.++-..|.++.|+.. +..-|.+. | .+|+.+..+.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 4455666 899999999999999999999999842 22345542 1 35777766654
No 387
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=44.92 E-value=41 Score=19.54 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=31.6
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEE
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIY 121 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~ 121 (154)
..++.+.|++..|=.++|+.++..+++.+...+-..
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~ 57 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQN 57 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeee
Confidence 467899999999999999999999999988876553
No 388
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=44.87 E-value=32 Score=22.18 Aligned_cols=32 Identities=6% Similarity=0.097 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
..+.|.|+...+=.++|+++++.+++.+....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 111 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVN 111 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEE
Confidence 57899999999999999999999999886544
No 389
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=43.99 E-value=53 Score=20.05 Aligned_cols=80 Identities=9% Similarity=0.188 Sum_probs=43.5
Q ss_pred HHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCC-cchHHHH
Q 031706 24 DNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP-TDTIERI 102 (154)
Q Consensus 24 ~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~-~~tV~~L 102 (154)
.++-+.+.+..|.|.+.+.+.+.. +....... .. .....+.|+...|.+ ... ..-+..+
T Consensus 21 ~~l~~ala~~lgkPe~~~~V~~~~---~~~~~~gg---~~----------dp~~~v~I~~~~g~t----~eqk~~l~~~i 80 (125)
T 2wkb_A 21 SEIEDAISNILGKPVAYIMSNYDY---QKNLRFSG---SN----------EGYCFVRLTSIGGIN----RSNNSLLADKI 80 (125)
T ss_dssp HHHHHHHHHHHCSCCTTCEEEEEE---CTTCEETT---BC----------SSCEEEEEECC---------CTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHEEEEEEc---CCceEeCC---CC----------CCcEEEEEEECCCCC----HHHHHHHHHHH
Confidence 345556667789999987766541 11111111 11 122234444434432 111 2356777
Q ss_pred HHHHhhhcCCCCcceEEEECC
Q 031706 103 KERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 103 K~~i~~~~gi~~~~q~l~~~g 123 (154)
-+.+++..|+|+++..+.+..
T Consensus 81 ~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 81 TKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp HHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHhCcCcceEEEEEEE
Confidence 778888999999998877643
No 390
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=43.89 E-value=49 Score=20.08 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=31.4
Q ss_pred EEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEe-ecCccccc
Q 031706 15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58 (154)
Q Consensus 15 ~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L-~d~~~L~~ 58 (154)
+-|+.+.||+++...|.+..+++++.--.+|.+..+ ..+.++++
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 92 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQ 92 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHH
Confidence 568889999999999999999988765455544333 34445544
No 391
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=43.86 E-value=37 Score=20.92 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=38.5
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcce-EEEECCeecCCCCcccccC---CCCCCEEEEEEe
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQ-RLIYAGKQLADDKTARDYN---IEGGSVLHLVLA 148 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q-~l~~~g~~L~d~~~L~~~~---i~~~~~i~l~~~ 148 (154)
.+-|+.+.||+++...|..+.++++++- .++.++.....+.++++.- -.++.-+||...
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 3567888899999999999999977664 4444555334455555432 123456666554
No 392
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=42.78 E-value=23 Score=20.01 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=22.2
Q ss_pred ccccccccccccceeeeeeeecceeeEEeecCCceE
Q 031706 54 RTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEI 89 (154)
Q Consensus 54 ~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~ 89 (154)
..|.+.|+.+|+.|.+.-+.+.+-++.++. +|..+
T Consensus 26 ~rL~~lGl~pG~~v~V~~~~p~~gpi~v~v-~g~~i 60 (81)
T 2k5l_A 26 RRIMDMGITRGCEIYIRKVAPLGDPIQINV-RGYEL 60 (81)
T ss_dssp HHHHHHTCCTTCEEEEEEECTTSCCEEEEE-TTEEE
T ss_pred HHHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEE
Confidence 368899999999998877654332333333 34433
No 393
>2h3j_A Hypothetical protein PA4359; NESG, GFT structural genomics, PAT89, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.34.1.2
Probab=41.57 E-value=16 Score=20.13 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=16.8
Q ss_pred CcccccCCCCCCEEEEEEeec
Q 031706 130 KTARDYNIEGGSVLHLVLALR 150 (154)
Q Consensus 130 ~~L~~~~i~~~~~i~l~~~~~ 150 (154)
+.|.+.|+.+|+.|.+.-+.+
T Consensus 25 ~rL~~lGl~~G~~v~v~~~~p 45 (75)
T 2h3j_A 25 QRLFSMGLLPGAALRVVRIAP 45 (75)
T ss_dssp HHHHHHTCCTTCEEEEEECCT
T ss_pred HHHHHcCCCCCCEEEEEEECC
Confidence 457888888888888887766
No 394
>1ltr_D ETB-R2, heat-labIle enterotoxin; B subunit, anti-HSV; 3.04A {Escherichia coli} SCOP: b.40.2.1
Probab=41.19 E-value=23 Score=20.83 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=25.1
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhH
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~ 33 (154)
+.+...+|-+|.++|+.+.-+..-|..++..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (113)
T 1ltr_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (113)
T ss_dssp EEEECTTSCEEEECCCSTTSCSHHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4567789999999999998888877777654
No 395
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7
Probab=40.69 E-value=87 Score=21.52 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=34.1
Q ss_pred ccccccccceeeeeeeecceeeEEeecCCceEEEe-eCCcchHHHHHHHHhhhcC
Q 031706 58 DYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEID-IEPTDTIERIKERVEEKEG 111 (154)
Q Consensus 58 ~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~-v~~~~tV~~LK~~i~~~~g 111 (154)
+.++..+.++++++.-....+..|+-...+-..+. .++..+.+-+|+.+....+
T Consensus 49 Sh~iR~Dv~v~lvL~g~p~pp~tI~f~g~~lr~l~~PDErs~a~lI~kAL~~~~~ 103 (208)
T 2qwv_A 49 AQSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKALDASVG 103 (208)
T ss_dssp SSSBCSSEEEEEEEEECSSSCEEEEEETTTC----CCSHHHHHHHHHHHHHHTTT
T ss_pred hccccCCeEEEEEEcCCCCCCeEEEEeCcccccCCCCchHHHHHHHHHHHHhccc
Confidence 34677788888887765555666665444444566 5667788888888877544
No 396
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=40.47 E-value=43 Score=19.67 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=21.7
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
+|++...+|....+++.++.|+.+.-.+
T Consensus 5 ~v~~~~~~g~~~~~~~~~g~tlL~a~~~ 32 (103)
T 2wlb_A 5 KVFFVTPEGREIMIEGNEGDSILDLAHA 32 (103)
T ss_dssp EEEEECTTCCEEEEEECTTCBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHH
Confidence 4667667888889999999998875444
No 397
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=40.37 E-value=1.8 Score=26.12 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=48.1
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEeecCccc-cccccccccceeeeeeeecceeeEEeecCCceEEE
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL-ADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEI 91 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L-~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~ 91 (154)
+.++..+.+....+++.|.+..+++++ .+.++..| .++|+..=+.+.+.........+.+.. -
T Consensus 18 ~~~~m~~mei~~~l~~iiae~l~~~~~---------~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~-------~ 81 (101)
T 4dxe_H 18 LYFQSNAMENFDKVKDIIVDRLGVDAD---------KVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPD-------E 81 (101)
T ss_dssp ------CTTHHHHHHHHHHHTTCCCGG---------GCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCH-------H
T ss_pred HHHhcCHHHHHHHHHHHHHHHHCcChh---------hCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCH-------H
Confidence 556677778889999999999988765 34666777 888876666666555543222222111 1
Q ss_pred eeCCcchHHHHHHHHhhh
Q 031706 92 DIEPTDTIERIKERVEEK 109 (154)
Q Consensus 92 ~v~~~~tV~~LK~~i~~~ 109 (154)
.+....||++|-..|.++
T Consensus 82 ~l~~~~Tv~dl~~~I~~~ 99 (101)
T 4dxe_H 82 EAEKINTVGDAVKFINSL 99 (101)
T ss_dssp HHTTCCBHHHHHHHHC--
T ss_pred HHHcCCCHHHHHHHHHHc
Confidence 134566888888877654
No 398
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=40.23 E-value=59 Score=20.00 Aligned_cols=45 Identities=18% Similarity=0.295 Sum_probs=31.8
Q ss_pred EEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEe-ecCccccc
Q 031706 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L-~d~~~L~~ 58 (154)
.+-|+.+.||+++...|.+...++++.--.+|.+..+ ..+.++++
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~ 93 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQ 93 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHH
Confidence 3468889999999999999999988765455544333 34445544
No 399
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=39.91 E-value=42 Score=20.01 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=20.8
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK 27 (154)
+|++...+|...++++.++.|+.+.=
T Consensus 7 ~v~~~~~~g~~~~~~~~~g~tlL~aa 32 (109)
T 2y5c_A 7 NVVFVDRSGQRIPVSGRVGDNVLHLA 32 (109)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHH
Confidence 46666678998899999999997743
No 400
>2k4y_A FEOA-like protein; GFT structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Clostridium acetobutylicum}
Probab=39.63 E-value=26 Score=20.06 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=21.8
Q ss_pred cccccccccccceeeeeeeecceeeEEeecCCceE
Q 031706 55 TLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEI 89 (154)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~ 89 (154)
.|.+.|+.+|+.|.+.-+.+.+-++.++. +|..+
T Consensus 30 rL~~mGl~pG~~V~V~~~~p~~gpi~v~v-~g~~i 63 (86)
T 2k4y_A 30 KIMDMGIVRGTEIYIEGKAPMGDPIALRL-RGYSL 63 (86)
T ss_dssp HHHHHTCCTTCEEEEEEECTTSCSEEEEE-TTEEE
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCCEEEEE-CCEEE
Confidence 68899999999998877654223333333 34333
No 401
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=39.41 E-value=57 Score=19.07 Aligned_cols=67 Identities=13% Similarity=0.247 Sum_probs=43.7
Q ss_pred ecCCceE-EEeeCCcchHHHHHHHHhhhcCCC---CcceEEE---ECCeecC-CCCcccccCCCCCCEEEEEEee
Q 031706 83 TLTGKEI-EIDIEPTDTIERIKERVEEKEGIP---PVQQRLI---YAGKQLA-DDKTARDYNIEGGSVLHLVLAL 149 (154)
Q Consensus 83 ~~~g~~~-~~~v~~~~tV~~LK~~i~~~~gi~---~~~q~l~---~~g~~L~-d~~~L~~~~i~~~~~i~l~~~~ 149 (154)
..+|..+ ++.+...+....+-.+.-++.+++ ++++.|. -.|++|. .++.=-.|.+.....+.+++|.
T Consensus 12 ~~~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~~~~~y~L~Q~Lp~~kEL~iPd~aNvfYAm~~~~~~~FvLR~ 86 (87)
T 1lfd_A 12 VDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDEDEPEDYELLQIISEDHKLKIPENANVFYAMNSAANYDFILKK 86 (87)
T ss_dssp SCSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSSCGGGEEEEEESSSSCEEECCTTSBHHHHSCTTSCCEEEEEE
T ss_pred cCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEEEEcCCCCEEecCCCccEEEEEcCCCCcceEEec
Confidence 3455554 477888888888877777788875 5666665 2577654 3444455666666677777664
No 402
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=38.79 E-value=30 Score=25.83 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=37.4
Q ss_pred EeecCCc----eEEEeeCCcchHHHHHHHHhhhcCCC-CcceEEEE--C--Ce--ecCCCCcccc
Q 031706 81 VKTLTGK----EIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLIY--A--GK--QLADDKTARD 134 (154)
Q Consensus 81 v~~~~g~----~~~~~v~~~~tV~~LK~~i~~~~gi~-~~~q~l~~--~--g~--~L~d~~~L~~ 134 (154)
|...+|. ...+.++++.|+.+|-..++++.|+. .+-.-|.+ . +. -|+.+.++.+
T Consensus 12 V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 76 (375)
T 2al6_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (375)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHH
T ss_pred EEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhh
Confidence 4445665 88999999999999999999999984 33344543 1 21 2555666543
No 403
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=38.70 E-value=40 Score=22.86 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=39.1
Q ss_pred ecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEEC
Q 031706 74 RGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYA 122 (154)
Q Consensus 74 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~ 122 (154)
..+..+.|...+|..+.+.=-..+-+..|++.+...++++++.-.+..+
T Consensus 82 ~rg~~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~k 130 (191)
T 3f5r_A 82 CRGYDLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLR 130 (191)
T ss_dssp SSSEEEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTT
T ss_pred cCCcEEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeecc
Confidence 4567788888888888888777888999999999999988766555433
No 404
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=38.53 E-value=30 Score=22.68 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=20.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~ 28 (154)
.+.+. .||+.+.+++++++|+.++-.
T Consensus 5 ~i~~~-vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 5 TINLN-LNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEE-ETTEEEEEEECSSSBHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCCHHHHHH
Confidence 55664 589999999999999988644
No 405
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=38.49 E-value=67 Score=19.84 Aligned_cols=44 Identities=16% Similarity=0.243 Sum_probs=31.0
Q ss_pred EEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE-cceEeecCcccc
Q 031706 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 57 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~-~g~~L~d~~~L~ 57 (154)
.+-|+.+.||+++...|.+...++++.--.+| ++.....+.+++
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~ 94 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMS 94 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHH
Confidence 35589999999999999999999887655555 333223344444
No 406
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=38.28 E-value=33 Score=24.87 Aligned_cols=42 Identities=7% Similarity=0.196 Sum_probs=31.7
Q ss_pred CEEEEEeCCCCEEEEEEcC--CCcHHHHHHHHHhHhCCCCC---ceEEEEc
Q 031706 1 MQIFVKTLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPD---QQRLIFA 46 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~--~~tV~~lK~~i~~~~~i~~~---~q~L~~~ 46 (154)
+++.|...+|....++++. ++|+.++-+ ..|++.. ..-|++.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~e----~lgL~~~~~~~FaL~~~ 52 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIME----GMRLSQETQQYFTIWIC 52 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHHT----TSSCCTTGGGGEEEEEE
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHHH----HhCcCccccCeeEEEEE
Confidence 4688999999999999998 999999943 3677643 2445543
No 407
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=38.25 E-value=65 Score=20.18 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=32.2
Q ss_pred EEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcceEe-ecCccccc
Q 031706 14 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLAD 58 (154)
Q Consensus 14 ~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~~L-~d~~~L~~ 58 (154)
.+-|+.+.||+++...|.+...++++.--.+|-+..+ ..+.++++
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~ 101 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGS 101 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHH
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHH
Confidence 3568899999999999999999988775555543333 33445443
No 408
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=37.86 E-value=51 Score=21.49 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=19.6
Q ss_pred CCCCEEEEEEcCCCcHHHHHHHH
Q 031706 8 LTGKTITLEVESSDTIDNVKAKI 30 (154)
Q Consensus 8 ~~g~~~~~~v~~~~tV~~lK~~i 30 (154)
.||+.+.+++++++|+.+.-...
T Consensus 9 vNG~~~~v~~~~~~tLL~~Lr~~ 31 (161)
T 1rm6_C 9 LNGRAREDLVPDNMLLLDYLRET 31 (161)
T ss_dssp ETTEEEEEEEETTCBHHHHHHHT
T ss_pred ECCEEEEEecCCcCcHHHHHHHc
Confidence 59999999999999998876654
No 409
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=37.45 E-value=63 Score=18.98 Aligned_cols=54 Identities=4% Similarity=0.006 Sum_probs=36.6
Q ss_pred EEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCeecC-CCCcccc----cCCCCCCEEEEEE
Q 031706 90 EIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGKQLA-DDKTARD----YNIEGGSVLHLVL 147 (154)
Q Consensus 90 ~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~~L~-d~~~L~~----~~i~~~~~i~l~~ 147 (154)
.+.|+.+.|++++-.-|.++.++ +...+..++.-+. .+.++++ ++ ++..+++..
T Consensus 26 KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk--~dg~Lyv~Y 84 (91)
T 3w1s_C 26 VCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFK--TNDELIVSY 84 (91)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHC--BTTEEEEEE
T ss_pred EEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhC--CCCEEEEEE
Confidence 46788999999999999999988 5666666775333 3444433 23 355666543
No 410
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=36.91 E-value=50 Score=28.66 Aligned_cols=32 Identities=28% Similarity=0.261 Sum_probs=27.9
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~ 33 (154)
.|.+-.++|-.+.++++.++|+.++|+.+.++
T Consensus 53 ~vd~LLPnGi~i~~~v~~~~Tl~~iK~~lw~~ 84 (1092)
T 2y3a_A 53 SVDFLLPTGIYIQLEVPREATISYIKQMLWKQ 84 (1092)
T ss_dssp EEEEECTTCCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEECCCceEEEEEecCcccHHHHHHHHHHH
Confidence 35566779999999999999999999999876
No 411
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=36.73 E-value=36 Score=22.18 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=28.6
Q ss_pred CEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE
Q 031706 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 42 (154)
Q Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~ 42 (154)
..+.|.|+...+=.++|+++++.+++.+....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVN 121 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVN 121 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEE
Confidence 57899999999999999999999999886654
No 412
>2lx9_A Ferrous iron transport protein A; FEOA; NMR {Escherichia coli}
Probab=36.71 E-value=35 Score=19.48 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=19.7
Q ss_pred cccccccccccceeeeeeeecceeeEEe
Q 031706 55 TLADYNIQKESTLHLVLRLRGGTMIKVK 82 (154)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~ 82 (154)
.|.+.|+.+|+.|.+.-+.+.+-++.|+
T Consensus 25 rL~~mGl~pG~~V~Vi~~ap~ggPi~v~ 52 (83)
T 2lx9_A 25 KLLSLGMLPGSSFNVVRVAPLGDPIHIE 52 (83)
T ss_dssp HHHHSSCCSSSEEEEEEECTTTCCEEEE
T ss_pred HHHHCCCCCCCEEEEEEeCCCCCcEEEE
Confidence 6889999999999888765433333333
No 413
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=36.07 E-value=34 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=21.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
|.+.+. .+|+.+.+++++++|+.+.-..
T Consensus 10 m~i~~~-ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 10 MRISAT-INGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHH
T ss_pred ceEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 345554 4889999999999999886554
No 414
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=41.87 E-value=7.8 Score=23.31 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=42.8
Q ss_pred cHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHH
Q 031706 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIER 101 (154)
Q Consensus 22 tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~ 101 (154)
....+++.+.+..+++++ .+.++..|.++|+..=+.+.+.........+.+.. -.+....||++
T Consensus 27 i~~~l~~ila~~l~i~~~---------~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~-------~~l~~~~TV~~ 90 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKE---------EISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVD-------DELDLLETVDE 90 (103)
Confidence 455677777777776653 34556677888886666666665554333332221 12334568888
Q ss_pred HHHHHhhh
Q 031706 102 IKERVEEK 109 (154)
Q Consensus 102 LK~~i~~~ 109 (154)
|-..|.++
T Consensus 91 l~~~I~~~ 98 (103)
T 2lte_A 91 LFQLVEKH 98 (103)
Confidence 87777654
No 415
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=35.36 E-value=65 Score=18.56 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=49.4
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEc-ceEeecCccccccccccccceeeeeeee
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~-g~~L~d~~~L~~~~i~~~~~i~l~~~~~ 74 (154)
...+.|+.++....+-....+++.+|+..--++.+ |.=+....+-...-++.|+.+.+..|.+
T Consensus 25 fkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 25 YKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred ceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 34578999999999888889999999987666654 5556777777777788999998887754
No 416
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=34.72 E-value=42 Score=22.02 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=21.1
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
.+.+. .||+.+.+++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (163)
T 1ffv_A 5 IITVN-VNGKAQEKAVEPRTLLIHFLRE 31 (163)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHh
Confidence 45554 5899999999999999986554
No 417
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=34.48 E-value=73 Score=18.85 Aligned_cols=82 Identities=12% Similarity=0.191 Sum_probs=45.7
Q ss_pred cHHHHHHHHHhHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHH
Q 031706 22 TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIER 101 (154)
Q Consensus 22 tV~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~ 101 (154)
-..++-+.+.+..|.|.+.+-+.+.. +..+. ++-.. .....+.|+...|.+.. ....-+..
T Consensus 18 l~~~l~~~l~~~l~kPe~~~~v~~~~-----~~~~~-~~g~~----------~~~~~i~i~~~~g~~~e---qk~~l~~~ 78 (113)
T 1hfo_A 18 FLSSTSALVGNILSKPGSYVAVHINT-----DQQLS-FGGST----------NPAAFGTLMSIGGIEPS---RNRDHSAK 78 (113)
T ss_dssp HHHHHHHHHHHHHTCCGGGCEEEEEC-----SCEEE-ETTBC----------SSCEEEEEEESSSCSHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHEEEEEeC-----CccEE-ecCCC----------CCeEEEEEEEecCCCHH---HHHHHHHH
Confidence 35667778888899999977665531 11110 11011 11123344443332200 01234566
Q ss_pred HHHHHhhhcCCCCcceEEEEC
Q 031706 102 IKERVEEKEGIPPVQQRLIYA 122 (154)
Q Consensus 102 LK~~i~~~~gi~~~~q~l~~~ 122 (154)
+-+.+++..|+|+++..+.+.
T Consensus 79 i~~~l~~~lgi~~~~v~I~~~ 99 (113)
T 1hfo_A 79 LFDHLNTKLGIPKNRMYIHFV 99 (113)
T ss_dssp HHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHhCcCcCeEEEEEE
Confidence 677788889999999887764
No 418
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=34.25 E-value=64 Score=18.96 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK 27 (154)
+|++...+|...++++.++.|+.+.-
T Consensus 2 ~v~~~~~~g~~~~~~~~~g~tlL~aa 27 (106)
T 1uwm_A 2 KIIFIEHNGTRHEVEAKPGLTVMEAA 27 (106)
T ss_dssp EEEEECTTCCEEEEECCTTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57776678888899999999987643
No 419
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=34.18 E-value=53 Score=21.62 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=21.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
.+.+. .||+.+.+++++++|+.++-..
T Consensus 5 ~i~~~-vNG~~~~~~v~~~~tLLd~LR~ 31 (166)
T 1n62_A 5 HIELT-INGHPVEALVEPRTLLIHFIRE 31 (166)
T ss_dssp EEEEE-ETTEEEEEEECTTCBHHHHHHH
T ss_pred eEEEE-ECCEEEEEecCCCCcHHHHHHH
Confidence 45554 5899999999999999986554
No 420
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=33.98 E-value=67 Score=19.95 Aligned_cols=26 Identities=35% Similarity=0.357 Sum_probs=21.3
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVK 27 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK 27 (154)
+|++...+|...++++.++.|+.+.-
T Consensus 23 ~Vt~~~~~G~~~~v~~~~G~tLL~aa 48 (126)
T 3hui_A 23 KINFVDHTGETRTVEVEEGATVMEAA 48 (126)
T ss_dssp EEEEECTTSCEEEEEEETTSBHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHH
Confidence 57777788988999999999998743
No 421
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=33.52 E-value=61 Score=18.74 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=21.0
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
+|++...++....+++.++.|+.+.=..
T Consensus 6 ~v~~~~~~~~~~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 6 TITAVTEDGESLRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEETTTEEEEEEEESCCTHHHHHHH
T ss_pred EEEEEecCCCcEEEEeCCCChHHHHHHH
Confidence 4566655677889999999999876544
No 422
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=33.50 E-value=86 Score=19.40 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=27.0
Q ss_pred CCceEEEeeCCcchHHHHHHHHhhhcCCC--------CcceEEE
Q 031706 85 TGKEIEIDIEPTDTIERIKERVEEKEGIP--------PVQQRLI 120 (154)
Q Consensus 85 ~g~~~~~~v~~~~tV~~LK~~i~~~~gi~--------~~~q~l~ 120 (154)
+.....+.+....|+.+|-++.-.+.|.+ ++++.|.
T Consensus 18 ~~py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLv 61 (117)
T 2c5l_C 18 EQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLL 61 (117)
T ss_dssp SCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEE
T ss_pred CCCeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEE
Confidence 33445688889999999988887776654 6777775
No 423
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=33.41 E-value=63 Score=19.01 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=21.5
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKA 28 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~ 28 (154)
+|++...+|...++++.++.|+.+.=.
T Consensus 2 ~V~~~~~~g~~~~~~~~~g~tlLeaa~ 28 (106)
T 1xlq_A 2 KVVYVSHDGTRRELDVADGVSLMQAAV 28 (106)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHH
Confidence 577766788888999999999877543
No 424
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=32.90 E-value=42 Score=16.49 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=12.0
Q ss_pred HHHHHHHHhHhCCCCC
Q 031706 24 DNVKAKIQDKEGIPPD 39 (154)
Q Consensus 24 ~~lK~~i~~~~~i~~~ 39 (154)
.+|-..+++++|+++.
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4566777899999864
No 425
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=32.69 E-value=59 Score=18.68 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=39.6
Q ss_pred CEEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCc--------eEEEEcceEeec-Cccccccccccccceeeee
Q 031706 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--------QRLIFAGKQLED-GRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 1 m~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~--------q~L~~~g~~L~d-~~~L~~~~i~~~~~i~l~~ 71 (154)
++|++...+| ..+++++++.|+.+.-.+- -..+|..- ...+..|..-.. ...|.+-...+|..+-...
T Consensus 1 ~~v~~~~~~g-~~~~~~~~g~tlL~a~~~~--gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 77 (94)
T 1awd_A 1 YKVTLKTPSG-EETIECPEDTYILDAAEEA--GLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVA 77 (94)
T ss_dssp CEEEEEETTE-EEEEECCTTSCHHHHHHHT--TCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred CEEEEEeCCC-cEEEEECCCCcHHHHHHHc--CCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeEC
Confidence 4677776666 6789999999998755442 12233221 111234543322 2244444445555554444
Q ss_pred eeecceee
Q 031706 72 RLRGGTMI 79 (154)
Q Consensus 72 ~~~~~~~i 79 (154)
++.+.+.|
T Consensus 78 ~~~~d~~i 85 (94)
T 1awd_A 78 YPTSDVTI 85 (94)
T ss_dssp EESSCEEE
T ss_pred EECCCEEE
Confidence 55544444
No 426
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=31.12 E-value=46 Score=18.89 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=17.1
Q ss_pred cccccccccccceeeeeeee
Q 031706 55 TLADYNIQKESTLHLVLRLR 74 (154)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~ 74 (154)
.|.+.|+.+|..|.+.-+.+
T Consensus 30 rL~~lGl~pG~~v~V~~~~p 49 (85)
T 3mhx_A 30 RLRELGFVKGEEVRMVAKGP 49 (85)
T ss_dssp HHHHTTCCTTCEEEEEESCS
T ss_pred HHHHCCCCCCCEEEEEEeCC
Confidence 58899999999998887754
No 427
>1b44_D ETB-POL, protein (B-POL subunit of heat-labIle enterotoxin); B subunit, heat-labIle enterotoxin anti-HSV; 3.30A {Escherichia coli} SCOP: b.40.2.1
Probab=31.01 E-value=31 Score=20.78 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=24.2
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhH
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDK 33 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~ 33 (154)
+.+...+|-+|.++|+.+.-+..-|..++..
T Consensus 38 viisf~ngatfqvevpgsqh~~sqk~~~erm 68 (129)
T 1b44_D 38 VIITFKSGATFQVEVPGSQHIDSQKKAIERM 68 (129)
T ss_dssp EEEECTTSCEEEECCCCTTSCSTHHHHHHHH
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHH
Confidence 4567789999999999988777777766644
No 428
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=30.53 E-value=20 Score=24.28 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceE-EEEcc
Q 031706 10 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAG 47 (154)
Q Consensus 10 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~-L~~~g 47 (154)
+..+.+.|++..+=.++|++|++.+++.+.... +...|
T Consensus 131 nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g 169 (198)
T 3bbo_V 131 ENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD 169 (198)
T ss_dssp SCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC
Confidence 457899999999999999999999998876543 44444
No 429
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.06 E-value=41 Score=16.28 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=10.3
Q ss_pred CCcHHHHHHHHHhH
Q 031706 20 SDTIDNVKAKIQDK 33 (154)
Q Consensus 20 ~~tV~~lK~~i~~~ 33 (154)
+.||.+||..|++.
T Consensus 2 sntvkelknyiqel 15 (46)
T 3he4_B 2 SNTVKELKNYIQEL 15 (46)
T ss_dssp -CCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHH
Confidence 46888999888764
No 430
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=29.82 E-value=75 Score=17.59 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=28.4
Q ss_pred hhcCCCCcceEEEECCeecCCCC--cccccCCCCCCEEEEEEeecCCC
Q 031706 108 EKEGIPPVQQRLIYAGKQLADDK--TARDYNIEGGSVLHLVLALRGGN 153 (154)
Q Consensus 108 ~~~gi~~~~q~l~~~g~~L~d~~--~L~~~~i~~~~~i~l~~~~~gg~ 153 (154)
++-|+.+.+.-+..+|+.+.+.. .+...--..+..+.+.+. |+|.
T Consensus 41 ~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~-R~g~ 87 (88)
T 2uzc_A 41 AQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNMTLQ-RESD 87 (88)
T ss_dssp HHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEEEEE-CCCC
T ss_pred HHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE-eCCC
Confidence 44588899999999999887642 222111124778777764 4443
No 431
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=29.66 E-value=82 Score=17.95 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
+|++...+| ..+++++++.|+.+.-.+
T Consensus 3 ~v~~~~~~g-~~~~~~~~g~tlL~a~~~ 29 (95)
T 1frr_A 3 KTVLKTPSG-EFTLDVPEGTTILDAAEE 29 (95)
T ss_dssp EEEEEETTE-EEEEEECTTCCHHHHHHH
T ss_pred EEEEEeCCC-cEEEEeCCCCcHHHHHHH
Confidence 567766677 678899999999775443
No 432
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=29.30 E-value=98 Score=18.73 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=38.6
Q ss_pred cCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEEECCe--ecCCCCcc
Q 031706 84 LTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLIYAGK--QLADDKTA 132 (154)
Q Consensus 84 ~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~~~g~--~L~d~~~L 132 (154)
+.++.+.+...++-++.++-.-|-.++|+..++..+...|. .|+-..++
T Consensus 25 p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~~pLDl~~pV 75 (104)
T 1wfy_A 25 GLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEKQPMDLENPV 75 (104)
T ss_dssp SSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCSSCCCTTSBG
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCccccccCCch
Confidence 57888899999999999999999999999888887776665 34433333
No 433
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=29.26 E-value=1.3e+02 Score=24.71 Aligned_cols=59 Identities=14% Similarity=0.294 Sum_probs=39.5
Q ss_pred eEEEeeCCcchHHHHHHHHhhhcC--CCCcc--------eEEEECCe--e------cCCCCcccccCCCCCCEEEEE
Q 031706 88 EIEIDIEPTDTIERIKERVEEKEG--IPPVQ--------QRLIYAGK--Q------LADDKTARDYNIEGGSVLHLV 146 (154)
Q Consensus 88 ~~~~~v~~~~tV~~LK~~i~~~~g--i~~~~--------q~l~~~g~--~------L~d~~~L~~~~i~~~~~i~l~ 146 (154)
...+.++.+.|+.++-+.++.+.. +.... ..++|... . -.-.++|.+.++.+|+.|.+.
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~ 789 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 789 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEE
Confidence 355777778899999999988644 32111 34455432 1 123678999999999998875
No 434
>3u2a_A Ggdef family protein; phosphodiesterase, proteolysis, cell-cycle, CLPXP, cyclic DI hydrolase; 1.70A {Caulobacter vibrioides}
Probab=29.23 E-value=47 Score=20.15 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.2
Q ss_pred CCCCEEEEEEeecCCC
Q 031706 138 EGGSVLHLVLALRGGN 153 (154)
Q Consensus 138 ~~~~~i~l~~~~~gg~ 153 (154)
.+|+.|.+.+|+|||.
T Consensus 79 ~~G~EiavRlRmRG~~ 94 (129)
T 3u2a_A 79 EPGSEVVARFRVRGGE 94 (129)
T ss_dssp CTTCEEEEEEEBTTSC
T ss_pred CCCCeeEEEEEeccCc
Confidence 4799999999999985
No 435
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=28.63 E-value=66 Score=17.84 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=10.7
Q ss_pred CCcceEEEECCeecCCC
Q 031706 113 PPVQQRLIYAGKQLADD 129 (154)
Q Consensus 113 ~~~~q~l~~~g~~L~d~ 129 (154)
|+-...|+.+|+.|..+
T Consensus 23 p~p~v~W~k~g~~l~~~ 39 (84)
T 2lu7_A 23 PGGPVRWYKDGERLASQ 39 (84)
T ss_dssp CSTTCEEEETTEECCCC
T ss_pred CCcEEEEEECCEEcccc
Confidence 44456777777777544
No 436
>1ibx_B Chimera of IGG binding protein G and DNA fragmentation factor 45; DFF40, DFF45, protein-protein complex, CIDE, CIDE domain complex; HET: DNA; NMR {Streptococcus SP} SCOP: d.15.2.1
Probab=28.25 E-value=27 Score=22.55 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=28.2
Q ss_pred cchHHHHHHHHhhhcCCCC--cceEEE--ECCeecCCCCccc
Q 031706 96 TDTIERIKERVEEKEGIPP--VQQRLI--YAGKQLADDKTAR 133 (154)
Q Consensus 96 ~~tV~~LK~~i~~~~gi~~--~~q~l~--~~g~~L~d~~~L~ 133 (154)
..+..+|+.+.+...+++. ...+|. ..|.+++|+.-+.
T Consensus 81 A~SL~EL~~K~~~kL~l~~~~~~~~LvLeeDGTeVddEeYF~ 122 (145)
T 1ibx_B 81 ASCLEDLRSKACDILAIDKSLTPVTLVLAEDGTIVDDDDYFL 122 (145)
T ss_dssp CSSHHHHHHHHHHHHTCSCTTSCCEEEETTTCCBCSSHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCccccEEEEeeCCcEEechhHhh
Confidence 4588999999999999966 366666 4688887665444
No 437
>2k5f_A Ferrous iron transport protein A; SH3-like, alpha+beta, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum}
Probab=28.23 E-value=55 Score=19.62 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=22.3
Q ss_pred cccccccccccceeeeeeeecceeeEEeecCCceEE
Q 031706 55 TLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIE 90 (154)
Q Consensus 55 ~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~ 90 (154)
.|.+.|+.+|+.|.+.-+.+.+-++.|+. ++..+.
T Consensus 26 rL~~lGl~pG~~V~Vv~~~P~ggpi~V~v-~g~~ia 60 (105)
T 2k5f_A 26 RLMDLGLVRGAKLKVLRFAPLGDPIEVNC-NGMLLT 60 (105)
T ss_dssp HHHHHTCSTTCEEEEEEECSSSCSEEEEE-TTEEEE
T ss_pred HHHHcCCCCCCEEEEEEECCCCCCEEEEE-CCEEEE
Confidence 68899999999998877654322333333 344433
No 438
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=28.13 E-value=88 Score=17.82 Aligned_cols=42 Identities=10% Similarity=0.139 Sum_probs=36.4
Q ss_pred eEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 79 IKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 79 i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
+.+..++++.-.++|.+-.|+.+--.+..++-++.++....+
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHHeEEE
Confidence 456677888889999999999999999999999998887776
No 439
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=28.04 E-value=86 Score=21.83 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=44.1
Q ss_pred ccccccceeeeeeeecceeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCC---CCcceEEE-ECCeecCCCCcc---
Q 031706 60 NIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGI---PPVQQRLI-YAGKQLADDKTA--- 132 (154)
Q Consensus 60 ~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi---~~~~q~l~-~~g~~L~d~~~L--- 132 (154)
-+.+|++|.+-.++. .|.|...-...-.+...+..++.+- |...-|. ..+..-++ .+|.........
T Consensus 114 ~L~~gd~L~iP~r~~---tV~V~G~V~~p~~v~~~~g~~~~dY---i~~agg~~~Ad~~~v~VI~~nG~v~~~~~a~Wn~ 187 (236)
T 3p42_A 114 PLVGDYTLYTVQRPV---TITLLGAVSGAGQLPWLAGRSVTDY---LQDHPRLAGADKNNVMVITPEGETVVAPVALWNK 187 (236)
T ss_dssp BCCEEEEEECCCCCS---EEEEEESBTTCEEEECCTTCCHHHH---HTTSCBCTTBCSSEEEEECTTSCEEEEECSSTTC
T ss_pred ccCCCCEEEECCCCC---EEEEEeecCCcCeEeecCCCCHHHH---HHhCCCCCCCCCccEEEEeCCCCEEecccccccc
Confidence 356777765554432 3444443334445666677676554 4333333 33344444 456544322111
Q ss_pred cccCCCCCCEEEEEEe
Q 031706 133 RDYNIEGGSVLHLVLA 148 (154)
Q Consensus 133 ~~~~i~~~~~i~l~~~ 148 (154)
....+.+|++|+|-++
T Consensus 188 ~~~~l~PG~~I~Vp~~ 203 (236)
T 3p42_A 188 RHVEPPPGSQLWLGFS 203 (236)
T ss_dssp CCEECCTTCEEEECBC
T ss_pred CCCCCCCCCEEEEeCC
Confidence 2446999999988665
No 440
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=27.30 E-value=1.6e+02 Score=23.52 Aligned_cols=54 Identities=9% Similarity=0.035 Sum_probs=38.1
Q ss_pred EEeCCCC----EEEEEEcCCCcHHHHHHHHHhHhCCCC-CceEEEE--c--c--eEeecCccccc
Q 031706 5 VKTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF--A--G--KQLEDGRTLAD 58 (154)
Q Consensus 5 v~~~~g~----~~~~~v~~~~tV~~lK~~i~~~~~i~~-~~q~L~~--~--g--~~L~d~~~L~~ 58 (154)
|-..+|. ...+.+++++||.++-..|.+..++.. +..-|.+ . | .+|+.+.++..
T Consensus 12 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~ 76 (656)
T 2j0j_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSN 76 (656)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred EeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHH
Confidence 3344555 889999999999999999999999743 2334443 2 2 35677777665
No 441
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=27.25 E-value=90 Score=27.14 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=27.8
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHh
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~ 34 (154)
|.+-.++|-.+.++++.++|+.++|+.+.+..
T Consensus 45 vd~LLPnGi~i~l~v~~~~tl~~iK~~lw~~a 76 (1091)
T 3hhm_A 45 VECLLPNGMIVTLECLREATLITIKHELFKEA 76 (1091)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHG
T ss_pred EEEEcCCCeEEEEEecCCCcHHHHHHHHHHHH
Confidence 45566799999999999999999999998764
No 442
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=27.21 E-value=34 Score=22.06 Aligned_cols=63 Identities=13% Similarity=0.230 Sum_probs=40.6
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhC-CCCCce----EEEEc-----------------ceE-eecCccccccccccccceee
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEG-IPPDQQ----RLIFA-----------------GKQ-LEDGRTLADYNIQKESTLHL 69 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~-i~~~~q----~L~~~-----------------g~~-L~d~~~L~~~~i~~~~~i~l 69 (154)
+.+-...++|+.||-..|.+..- .+.-.- +++|- |+. -+|++||.+.+..-|+-|.+
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 135 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDI 135 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEE
Confidence 45556789999999888876531 111111 22221 222 24678999999999999988
Q ss_pred eeeeec
Q 031706 70 VLRLRG 75 (154)
Q Consensus 70 ~~~~~~ 75 (154)
.+.++.
T Consensus 136 aI~pP~ 141 (143)
T 4a6q_A 136 AITPPN 141 (143)
T ss_dssp EEECGG
T ss_pred EEeCCC
Confidence 887654
No 443
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=26.92 E-value=79 Score=22.84 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=27.5
Q ss_pred eeeEEeecCCceEEEeeCC--cchHHHHHHHHhhhcCCCC
Q 031706 77 TMIKVKTLTGKEIEIDIEP--TDTIERIKERVEEKEGIPP 114 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~--~~tV~~LK~~i~~~~gi~~ 114 (154)
..+.|..++|....++++. ++|+.++. +..|++.
T Consensus 6 ~~i~V~l~dg~~~~~~i~~~~~tt~~el~----e~lgL~~ 41 (322)
T 4dxa_B 6 EKVRIYRMDGSYRSVELKHGNNTTVQQIM----EGMRLSQ 41 (322)
T ss_dssp CEEEEECTTSCEEEEECTTGGGCCHHHHH----TTSSCCT
T ss_pred eEEEEEEECCcEEEEEEcCCCCCcHHHHH----HHhCcCc
Confidence 4577788899999999999 89999994 3467754
No 444
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=26.04 E-value=1.1e+02 Score=18.05 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=33.5
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcce
Q 031706 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (154)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~ 48 (154)
|.||.- .|+...+.+..--...+|.+++...+|-+- -|.|.+.
T Consensus 5 vRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afGq~l---dl~y~nn 48 (94)
T 2jrh_A 5 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPL---DLHYMNN 48 (94)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHCSSE---EEEEECS
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCee---eeEEecc
Confidence 444443 678899999999999999999999998665 3666543
No 445
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=25.98 E-value=71 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=19.1
Q ss_pred CcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 21 DTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 21 ~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
....++++++.+..|++...+.++.+|
T Consensus 67 ~~~~~l~~~la~~~g~~~~~~i~~~~g 93 (367)
T 3euc_A 67 PSSEALRAKLKEVMQVPAGMEVLLGNG 93 (367)
T ss_dssp CCHHHHHHHHHHHHTCCTTCEEEEEEH
T ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCC
Confidence 357899999999999853345555554
No 446
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=25.77 E-value=2e+02 Score=23.75 Aligned_cols=60 Identities=10% Similarity=0.205 Sum_probs=39.5
Q ss_pred EEEEEEcCCCcHHHHHHHHHhHhC--CCCCc--------eEEEEcce--E----e--ecCccccccccccccceeeee
Q 031706 12 TITLEVESSDTIDNVKAKIQDKEG--IPPDQ--------QRLIFAGK--Q----L--EDGRTLADYNIQKESTLHLVL 71 (154)
Q Consensus 12 ~~~~~v~~~~tV~~lK~~i~~~~~--i~~~~--------q~L~~~g~--~----L--~d~~~L~~~~i~~~~~i~l~~ 71 (154)
...+.++++.|+.++-+.+..+.. +.... .+++|... . . .-+++|+++++.+|+.|.+.-
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 790 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 790 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEEC
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEc
Confidence 356778888999999998887533 32211 34555422 1 1 124579999999999887654
No 447
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=25.42 E-value=1.1e+02 Score=18.13 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=38.5
Q ss_pred eeeEEeecCCceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 77 TMIKVKTLTGKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 77 ~~i~v~~~~g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
..+.+..++++...++|.+-.|+.+--.+..+.-++.++....+
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~pe~C~Vy 61 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIPECCAVY 61 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCCGGGEEEE
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHHcEEE
Confidence 35677788998999999999999999999999999999888776
No 448
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.88 E-value=1.1e+02 Score=19.98 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=31.1
Q ss_pred CceEEEeeCCcchHHHHHHHHhhhcCCCCcceEEE
Q 031706 86 GKEIEIDIEPTDTIERIKERVEEKEGIPPVQQRLI 120 (154)
Q Consensus 86 g~~~~~~v~~~~tV~~LK~~i~~~~gi~~~~q~l~ 120 (154)
+.++.+.|+...+=.++|+.++..+++.+...+-.
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl 127 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 127 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEE
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEee
Confidence 35789999999999999999999999998888655
No 449
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=24.66 E-value=98 Score=18.31 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=29.4
Q ss_pred EEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcce-Ee-ecCccccc
Q 031706 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QL-EDGRTLAD 58 (154)
Q Consensus 13 ~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g~-~L-~d~~~L~~ 58 (154)
-.+.|+.+.|++++...|.++..++ ..-| |.+. .+ ..+.++++
T Consensus 30 ~KflV~~~~t~~~~~~~lRkrL~l~--alFl-yvn~~~~Ps~d~~m~~ 74 (96)
T 1wz3_A 30 SKFKVSGSDKFANVIDFLRRQLHSD--SLFV-YVNSAFSPNPDESVID 74 (96)
T ss_dssp CEEEEETTSBTHHHHHHHHHHHTCS--SCEE-EEEEEECCCTTSBHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHhcCCc--eEEE-EECCcccCChhhHHHH
Confidence 3467889999999999999999887 3333 4443 33 33445443
No 450
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=24.45 E-value=1.1e+02 Score=17.82 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=29.1
Q ss_pred hhcCCCCcceEEEECCeecCCCCccccc--CCCCCCEEEEEEeecCC
Q 031706 108 EKEGIPPVQQRLIYAGKQLADDKTARDY--NIEGGSVLHLVLALRGG 152 (154)
Q Consensus 108 ~~~gi~~~~q~l~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~~~gg 152 (154)
++-|+.+.+.-+..+|+.+.+...+... ...++..+.+.+ .|+|
T Consensus 51 ~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v-~R~g 96 (105)
T 2i4s_A 51 ESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV-ERDG 96 (105)
T ss_dssp HHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEE-EETT
T ss_pred HHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEE-EECC
Confidence 3458888888888999988765544432 124677777766 3455
No 451
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=23.37 E-value=38 Score=19.83 Aligned_cols=19 Identities=37% Similarity=0.435 Sum_probs=11.3
Q ss_pred CCCCcceEEEECCeecCCC
Q 031706 111 GIPPVQQRLIYAGKQLADD 129 (154)
Q Consensus 111 gi~~~~q~l~~~g~~L~d~ 129 (154)
|.|.-...|.++|+.+.++
T Consensus 39 G~P~p~v~W~k~g~~l~~~ 57 (107)
T 3knb_B 39 GEPPPVVVWEKGGQQLAAS 57 (107)
T ss_dssp EESCCEEEEEETTEECCCC
T ss_pred EecCCEEEEEECcccccce
Confidence 4455556676777666543
No 452
>3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae}
Probab=23.16 E-value=73 Score=21.59 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=37.2
Q ss_pred EEEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 2 ~v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
++.|...+|..+.++=-...-...|++.+.+.++++.+.-.+...|
T Consensus 86 ~LrI~~K~g~~~~fdGF~~~D~~~L~~~fk~~f~i~Le~kEls~kG 131 (191)
T 3f5r_A 86 DLKINTKNQGVIQLDGFSQDDYNLIKNDFHRRFNIQVEQREHSLRG 131 (191)
T ss_dssp EEEEEESSSCEEEEEEECGGGHHHHHHHHHHHHCCCCEECSSTTTT
T ss_pred EEEEEECCCceEEecCCCHHHHHHHHHHHHHHcCCCceeeeeeccc
Confidence 5677778888888887777789999999999999988766665554
No 453
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=23.03 E-value=1.3e+02 Score=18.13 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=33.1
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
|.||.. .|+...+.+..--...+|.+++...+|-+.+ |.|..
T Consensus 32 vRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afGq~ld---l~y~n 74 (111)
T 2c60_A 32 VRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFGQPLD---LHYMN 74 (111)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHSSCCE---EEEEC
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEec
Confidence 344433 6788899999999999999999999987764 66654
No 454
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=22.96 E-value=2.5e+02 Score=22.41 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=42.8
Q ss_pred EeecCCc----eEEEeeCCcchHHHHHHHHhhhcCCC-CcceEEE--EC--Ce--ecCCCCcccc-----cCCCCCCEEE
Q 031706 81 VKTLTGK----EIEIDIEPTDTIERIKERVEEKEGIP-PVQQRLI--YA--GK--QLADDKTARD-----YNIEGGSVLH 144 (154)
Q Consensus 81 v~~~~g~----~~~~~v~~~~tV~~LK~~i~~~~gi~-~~~q~l~--~~--g~--~L~d~~~L~~-----~~i~~~~~i~ 144 (154)
|...+|+ ...+.+++..||.++-..++++.++. .+.+-|. .. |. -|+.+.++.. ..+...+...
T Consensus 12 ~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~ 91 (656)
T 2j0j_A 12 YFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVREKFELAHPPEEWK 91 (656)
T ss_dssp CCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSBHHHHHHHHTTTSCTTSEE
T ss_pred EeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCcHHHHHhhhcccCCCcceE
Confidence 3344555 78899999999999999999999973 3333333 22 22 2445556555 2333444444
Q ss_pred EEEeec
Q 031706 145 LVLALR 150 (154)
Q Consensus 145 l~~~~~ 150 (154)
+-+|.|
T Consensus 92 ~~~rvr 97 (656)
T 2j0j_A 92 YELRIR 97 (656)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 445443
No 455
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=22.69 E-value=1.4e+02 Score=18.17 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=34.3
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEE
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~ 45 (154)
|.+..++++.-.++|-+..|+.+--.+.-+..++.++. .-.|
T Consensus 21 ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~Vy 62 (107)
T 1rrb_A 21 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPEC-CAVF 62 (107)
T ss_dssp EEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCTTT-EEEE
T ss_pred EEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCHHH-ceeE
Confidence 56777888888899999999999988888999988753 4444
No 456
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=22.66 E-value=1.2e+02 Score=17.65 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=29.6
Q ss_pred EEEEEeCCC--CEEEEEEcCCCcHHHHHHHHHhHhCCCC
Q 031706 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPP 38 (154)
Q Consensus 2 ~v~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~~i~~ 38 (154)
+|+|..... .++.+++...+-+..+-+++....+.++
T Consensus 7 rITve~l~~~~~~l~Fe~~nhDDi~~Ive~~~~~~~~~~ 45 (88)
T 3cjl_A 7 QITVEEKAEHQRTLSFEFSLHDDLFKLLEKVDGKMDMTP 45 (88)
T ss_dssp EEEEEESSTTCCEEEEEEEESSCHHHHHHHHTTTSSSCH
T ss_pred EEEEEEccCCCCCeEEeccChHHHHHHHHHhhccCCCCH
Confidence 577776644 7788999999999999999977777654
No 457
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=22.46 E-value=1.1e+02 Score=16.98 Aligned_cols=46 Identities=7% Similarity=0.033 Sum_probs=29.7
Q ss_pred hhhcCCCCcceEEEECCeecCCC--CcccccCCCCCCEEEEEEeecCC
Q 031706 107 EEKEGIPPVQQRLIYAGKQLADD--KTARDYNIEGGSVLHLVLALRGG 152 (154)
Q Consensus 107 ~~~~gi~~~~q~l~~~g~~L~d~--~~L~~~~i~~~~~i~l~~~~~gg 152 (154)
+++-|+.+.+.-+..+|..+.+. ..+..+--..+..+.+.+.-.+.
T Consensus 41 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~r~~~ 88 (90)
T 2he4_A 41 AARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVGPST 88 (90)
T ss_dssp HHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEEEECCCC
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEccCC
Confidence 34567888898888999988764 22322222236788887765543
No 458
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=22.44 E-value=1.2e+02 Score=17.56 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=33.2
Q ss_pred EEEEeC-CCCEEEEEEc--CCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 3 IFVKTL-TGKTITLEVE--SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~-~g~~~~~~v~--~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
|.||+. +++...+.++ ...+..++...++....++.....+.|..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D 54 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTD 54 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEEC
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEEC
Confidence 456655 3445556665 44899999999999999887777888853
No 459
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=22.19 E-value=1.2e+02 Score=17.42 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=17.8
Q ss_pred EEEEeCCCCEEEEEEcCCCcHHHHHHH
Q 031706 3 IFVKTLTGKTITLEVESSDTIDNVKAK 29 (154)
Q Consensus 3 v~v~~~~g~~~~~~v~~~~tV~~lK~~ 29 (154)
|++...+| ..+++++++.|+.+.=..
T Consensus 5 v~~~~~~~-~~~~~~~~g~tlL~a~~~ 30 (98)
T 1iue_A 5 ITLRTNDG-EKKIECNEDEYILDASER 30 (98)
T ss_dssp EEEEETTE-EEEEEEETTSCHHHHHHH
T ss_pred EEEEeCCC-eEEEEeCCCCcHHHHHHH
Confidence 44444344 678999999999875444
No 460
>4i3s_G Outer domain of HIV-1 GP120 (KER2018 OD4.2.2); antibody affinity, antibody specificity, binding sites, HIV infections, antibodies, HIV envelope protein GP120; 2.85A {Human immunodeficiency virus} PDB: 4i3r_G
Probab=22.10 E-value=1.9e+02 Score=19.54 Aligned_cols=70 Identities=11% Similarity=0.195 Sum_probs=44.4
Q ss_pred ceEEEEcceEeecCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCC---cchHHHHHHHHhhhc
Q 031706 40 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP---TDTIERIKERVEEKE 110 (154)
Q Consensus 40 ~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~---~~tV~~LK~~i~~~~ 110 (154)
.-.|+++|-.-+.+-.+.+-++.+++... .+.+...+.|...-+...+..-.+.. ..|..++.+++.+.+
T Consensus 5 STqLlLNGSLAEeeiiIRSeNit~NaKtI-IVqLn~sV~InCtRP~NNTRhCnis~~~Wn~tL~~V~~kL~e~f 77 (190)
T 4i3s_G 5 STQLLLNGSLAEKEIRIKSEDISDNAKNI-IVQLTKPVLINCARPSNNTQYCVVNRTQWNDTLGQVAIQLRKHW 77 (190)
T ss_dssp CCSEEESSCCCSSSCEEECSCTTCTTSCE-EEEEEEEEEEEEEECSSSCCEEEECHHHHHHHHHHHHHHHTTTS
T ss_pred echhhhehhhcCCceEEEEeccCCCceEE-EEEcCCceEEEEEecCCCeEEEEEeHHHhhhhHHHHHHHHHHhc
Confidence 33467788766666677777888776532 22333346777777766665555654 447777777777654
No 461
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=22.00 E-value=1.3e+02 Score=17.68 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=45.0
Q ss_pred HHHHHHHHH-hHhCCCCCceEEEEcceEeecCccccccccccccceeeeeeeecceeeEEeecCCceEEEeeCC-cchHH
Q 031706 23 IDNVKAKIQ-DKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEP-TDTIE 100 (154)
Q Consensus 23 V~~lK~~i~-~~~~i~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~-~~tV~ 100 (154)
..++-+.+. +..|.|.+.+-+.+.. +..+. ++ |.. .....+.|+...|.+ ... ..-..
T Consensus 19 ~~~~~~~l~~~~~gkPe~~~~v~~~~-----~~~~~-~~---G~~-------~~~~~i~i~~~~g~~----~eqk~~l~~ 78 (112)
T 3b64_A 19 LAQVYRAVTRDVLGKPEDLVMMTFHD-----STPMH-FF---GST-------DPVACVRVEALGGYG----PSEPEKVTS 78 (112)
T ss_dssp HHHHHHHHHHHTSCSCGGGCEEEEEC-----SCCCC-BT---TBC-------SSCEEEEEECTTCCC----TTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHEEEEEeC-----CceEE-EC---CCC-------CCEEEEEEEEcCCCC----HHHHHHHHH
Confidence 344556667 7889999877665541 11111 11 111 111233444434322 111 23466
Q ss_pred HHHHHHhhhcCCCCcceEEEECC
Q 031706 101 RIKERVEEKEGIPPVQQRLIYAG 123 (154)
Q Consensus 101 ~LK~~i~~~~gi~~~~q~l~~~g 123 (154)
.+-+.+++..|+|+++..+.+..
T Consensus 79 ~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 79 IVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp HHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHhCcCcceEEEEEEE
Confidence 77777888999999999887654
No 462
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.78 E-value=1.4e+02 Score=17.81 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=32.7
Q ss_pred EEEEeC-CCCEEEEEEcCCCcHHHHHHHHHhHhCCCCCceEEEEcc
Q 031706 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (154)
Q Consensus 3 v~v~~~-~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~q~L~~~g 47 (154)
|.||.. .|+.+.+.+..--...+|.+++...+|-+-+ |.|-.
T Consensus 21 vRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afGq~ld---l~y~n 63 (100)
T 2npt_B 21 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSMD---LHYTN 63 (100)
T ss_dssp EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHTSCEE---EEEEE
T ss_pred eEEEEEecCceEEEecCCCccHHHHHHHHHHHhCCeee---eEEec
Confidence 344433 6788999999999999999999999986653 66654
No 463
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=21.44 E-value=1.5e+02 Score=18.25 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=22.4
Q ss_pred chHHHHHHHHhhhc-CCCCcceEEEECCe
Q 031706 97 DTIERIKERVEEKE-GIPPVQQRLIYAGK 124 (154)
Q Consensus 97 ~tV~~LK~~i~~~~-gi~~~~q~l~~~g~ 124 (154)
.+..+|+.+++..+ ++......+.|...
T Consensus 57 ~s~~~L~~kV~~lFp~L~~~~f~l~YkDE 85 (117)
T 2ktr_A 57 GPSERLLSRVAVLFPALRPGGFQAHYRAE 85 (117)
T ss_dssp CHHHHHHHHHHHHCTTSCSSCEEEEEECT
T ss_pred CCHHHHHHHHHHHccccCCCcEEEEEECC
Confidence 49999999999998 56666788888653
No 464
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=21.19 E-value=47 Score=18.62 Aligned_cols=15 Identities=27% Similarity=0.711 Sum_probs=11.2
Q ss_pred cccCCCCCCEEEEEE
Q 031706 133 RDYNIEGGSVLHLVL 147 (154)
Q Consensus 133 ~~~~i~~~~~i~l~~ 147 (154)
..+.+++|+++|++-
T Consensus 8 k~v~LkDGstvyiFK 22 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFK 22 (74)
T ss_dssp EEEEBTTSCEEEEET
T ss_pred eeEecCCCcEEEEEc
Confidence 456678899998873
No 465
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=20.97 E-value=1.2e+02 Score=16.84 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=28.0
Q ss_pred hhcCCCCcceEEEECCeecCCCCccccc--CCCCCCEEEEEEeecCC
Q 031706 108 EKEGIPPVQQRLIYAGKQLADDKTARDY--NIEGGSVLHLVLALRGG 152 (154)
Q Consensus 108 ~~~gi~~~~q~l~~~g~~L~d~~~L~~~--~i~~~~~i~l~~~~~gg 152 (154)
++-|+.+.+.-+..+|+.+.+...+... ....+..+.+.+ .|+|
T Consensus 33 ~~aGl~~GD~I~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v-~R~g 78 (87)
T 2i6v_A 33 ESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTV-ERDG 78 (87)
T ss_dssp HHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEE-EETT
T ss_pred HHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEE-EECC
Confidence 4558888888888899888754433321 124567777666 3454
No 466
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=20.85 E-value=70 Score=18.27 Aligned_cols=43 Identities=7% Similarity=0.134 Sum_probs=25.1
Q ss_pred HhHhCCCCCceEEEEcceEeec--Cccccccccccccceeeeeee
Q 031706 31 QDKEGIPPDQQRLIFAGKQLED--GRTLADYNIQKESTLHLVLRL 73 (154)
Q Consensus 31 ~~~~~i~~~~q~L~~~g~~L~d--~~~L~~~~i~~~~~i~l~~~~ 73 (154)
+...|+.+.++.+-.+|....+ ...+..+--..+..+.+.+..
T Consensus 47 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r 91 (99)
T 3khf_A 47 AQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGNKISLRTTA 91 (99)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCEEEEEEEE
Confidence 3456788888888888887753 222222211455666555543
No 467
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=20.30 E-value=1.2e+02 Score=16.89 Aligned_cols=45 Identities=11% Similarity=0.112 Sum_probs=26.1
Q ss_pred hhhcCCCCcceEEEECCeecC--CCCcccccCCCCCCEEEEEEeecC
Q 031706 107 EEKEGIPPVQQRLIYAGKQLA--DDKTARDYNIEGGSVLHLVLALRG 151 (154)
Q Consensus 107 ~~~~gi~~~~q~l~~~g~~L~--d~~~L~~~~i~~~~~i~l~~~~~g 151 (154)
+++-|+.+.+.-+..+|..+. +...+...--..+..+.+.+.-.|
T Consensus 40 A~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~ 86 (91)
T 2vsp_A 40 ADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKK 86 (91)
T ss_dssp HHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEEEEEC--
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEeCC
Confidence 345678888888888888876 222222221122777777766443
Done!