BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031708
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 92 ADKYRKIKFCCLQSQAAEPYLR--------LCGLDREDVLRRFLFVEGPGLYHQASTGGG 143
+DK ++I L++Q LR L G + + + R ++ +G G Y STG G
Sbjct: 237 SDKLKEIYNIVLEAQ-----LRGVNGIKAGLTGREADALTRDYITEKGYGEYFGHSTGHG 291
Query: 144 WGITVNGKPG 153
G+ ++ PG
Sbjct: 292 IGLEIHEAPG 301
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 94 KYRKIKFCCLQSQAAEPYLRLCGLDREDV 122
+ +K+ C Q A EPYL LC + + V
Sbjct: 69 QLKKLSHTCFQVLAYEPYLELCEIMNQKV 97
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 94 KYRKIKFCCLQSQAAEPYLRLCGLDREDV 122
+ +K+ C Q A EPYL LC + + V
Sbjct: 69 QLKKLSHTCFQVLAYEPYLELCEIMNQKV 97
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 94 KYRKIKFCCLQSQAAEPYLRLCGLDREDV 122
+ +K+ C Q A EPYL LC + + V
Sbjct: 69 QLKKLSHTCFQVLAYEPYLELCEIMNQKV 97
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 94 KYRKIKFCCLQSQAAEPYLRLCGLDREDV 122
+ +K+ C Q A EPYL LC + + V
Sbjct: 69 QLKKLSHTCFQVLAYEPYLELCEIMNQKV 97
>pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C
Length = 155
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 53 PPVSSTVKPAMEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKI 98
P V ++P + QP V+ V C G WVI +KY K+
Sbjct: 98 PEVIVKIRPFAQDPEFQPKVIEKQSVA--CAGLCSWVIALEKYDKV 141
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 52 EP-PVSSTVKP---AMEPSLLQPGVVIYDGVCHLCHG 84
EP P T KP + + + ++ G +YDG C CHG
Sbjct: 575 EPAPRPDTPKPPALSNDTASIEAGAKLYDGYCSQCHG 611
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,210,331
Number of Sequences: 62578
Number of extensions: 146952
Number of successful extensions: 224
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 218
Number of HSP's gapped (non-prelim): 7
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)