BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031708
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40761|YUXK_BACSU Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168)
GN=yuxK PE=3 SV=1
Length = 137
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGL--DREDVLRRFLFV 129
V+++DGVC+LC+G V+++I+ D I F LQS+ + L+ GL DR D F+F+
Sbjct: 10 VLLFDGVCNLCNGAVQFIIKRDPDGLISFTSLQSETGQSLLKKSGLPTDRFD---SFVFI 66
Query: 130 EGPGLYHQASTG 141
E +Y +++
Sbjct: 67 EDGQVYTKSTAA 78
>sp|Q9SSR1|Y1259_ARATH DCC family protein At1g52590, chloroplastic OS=Arabidopsis thaliana
GN=At1g52590 PE=1 SV=1
Length = 172
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDV 122
++++DGVC+LC+GGVK+V D+ R I+F LQS+A + L G +D+
Sbjct: 55 IMLFDGVCNLCNGGVKFVRDHDRNRSIRFEALQSEAGKKLLLRSGRAPDDI 105
>sp|Q68FU5|CI085_RAT Uncharacterized protein C9orf85 homolog OS=Rattus norvegicus PE=2
SV=1
Length = 155
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 71 GVVIYDGVCHLCHGGVKWVIRADKYR---KIKFC--CLQSQAAEPYLRLC 115
++DGVC C ++W ++ KY+ K K C CLQ + Y +C
Sbjct: 37 NAKLHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMC 86
>sp|Q9CQ90|CI085_MOUSE Uncharacterized protein C9orf85 homolog OS=Mus musculus PE=2 SV=1
Length = 155
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 74 IYDGVCHLCHGGVKWVIRADKYR---KIKFC--CLQSQAAEPYLRLC 115
++DGVC C ++W ++ KY+ K K C CLQ + Y +C
Sbjct: 40 LHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMC 86
>sp|Q96MD7|CI085_HUMAN Uncharacterized protein C9orf85 OS=Homo sapiens GN=C9orf85 PE=1
SV=1
Length = 179
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 74 IYDGVCHLCHGGVKWVIRADKYR---KIKFC--CLQSQAAEPYLRLC 115
++DGVC C ++W ++ KY+ K K C CLQ + Y +C
Sbjct: 40 LHDGVCQRCKEVLEWRVKYSKYKPLSKPKKCVKCLQKTVKDSYHIMC 86
>sp|C0QX49|OBG_BRAHW GTPase obg OS=Brachyspira hyodysenteriae (strain ATCC 49526 / WA1)
GN=obg PE=3 SV=1
Length = 680
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 110 PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT 147
P L +C LD E R F+ + PG+ AS G G G+T
Sbjct: 197 PNLGVCYLDYE---RSFVIADIPGIIEGASEGAGLGLT 231
>sp|O49299|PGMC1_ARATH Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana
GN=At1g23190 PE=1 SV=2
Length = 583
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 21 LKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGVVIYDGVCH 80
L++ P +V G+ +DVA V AD+ Y +P S K + G+ +
Sbjct: 468 LQSSIPEVNKIVKGIRSDVASVASADEFEYKDPVDGSISK--------------HQGIRY 513
Query: 81 LCHGGVKWVIR 91
L G + V R
Sbjct: 514 LFEDGSRLVFR 524
>sp|P77495|PRPE_ECOLI Propionate--CoA ligase OS=Escherichia coli (strain K12) GN=prpE
PE=3 SV=1
Length = 628
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 13 YAAPLSSSLKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAMEPSLLQPGV 72
YA L++S+ T+F A V A+D+ V G +VY P L
Sbjct: 257 YAVALATSMDTIFGGKAGSVFFCASDIGWVVGHSYIVYA-------------PLLAGMAT 303
Query: 73 VIYDGVCHLCHGGVKWVIRADKYR 96
++Y+G+ GV W I +KY+
Sbjct: 304 IVYEGLPTWPDCGVWWTI-VEKYQ 326
>sp|C0M7R5|RPOC_STRE4 DNA-directed RNA polymerase subunit beta' OS=Streptococcus equi
subsp. equi (strain 4047) GN=rpoC PE=3 SV=1
Length = 1211
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 21 LKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAM 63
++ + P D++PG D+AD T A+ + + +T +P +
Sbjct: 1081 VRVMDPGDTDLLPGTLMDIADFTDANKEIVISGGIPATSRPVL 1123
>sp|C0MEE4|RPOC_STRS7 DNA-directed RNA polymerase subunit beta' OS=Streptococcus equi
subsp. zooepidemicus (strain H70) GN=rpoC PE=3 SV=1
Length = 1211
Score = 29.6 bits (65), Expect = 7.1, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 21 LKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAM 63
++ + P D++PG D+AD T A+ + + +T +P +
Sbjct: 1081 VRVMDPGDTDLLPGTLMDIADFTDANKEIVISGGIPATSRPVL 1123
>sp|P94892|RPOC_LEUMM DNA-directed RNA polymerase subunit beta' OS=Leuconostoc
mesenteroides subsp. mesenteroides (strain ATCC 8293 /
NCDO 523) GN=rpoC PE=3 SV=2
Length = 1220
Score = 29.6 bits (65), Expect = 7.6, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 21 LKTLFPSPADVVPGVAADVADVTGADDLVYTEPPVSSTVKPAM 63
++ + P D++PG D+AD A++ E V +T +P +
Sbjct: 1081 IRVMDPGQTDLLPGTLMDIADFKRANEPALFEGLVPATARPVL 1123
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,885,349
Number of Sequences: 539616
Number of extensions: 2544817
Number of successful extensions: 6176
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6168
Number of HSP's gapped (non-prelim): 23
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)