Query 031708
Match_columns 154
No_of_seqs 123 out of 546
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3011 Predicted thiol-disulf 99.9 4E-22 8.6E-27 154.4 10.3 82 69-152 8-89 (137)
2 PF04134 DUF393: Protein of un 99.8 4.7E-20 1E-24 134.2 8.5 78 73-151 1-79 (114)
3 PF13728 TraF: F plasmid trans 95.5 0.05 1.1E-06 44.6 6.6 60 71-133 124-194 (215)
4 cd02966 TlpA_like_family TlpA- 94.9 0.12 2.6E-06 34.8 6.2 65 71-138 23-113 (116)
5 TIGR02180 GRX_euk Glutaredoxin 94.4 0.16 3.5E-06 33.7 5.7 71 72-148 2-77 (84)
6 cd02982 PDI_b'_family Protein 93.8 0.28 6E-06 33.8 6.1 60 71-131 16-77 (103)
7 PF13098 Thioredoxin_2: Thiore 93.7 0.18 4E-06 35.4 5.2 62 70-134 8-94 (112)
8 TIGR01126 pdi_dom protein disu 93.5 0.45 9.8E-06 32.2 6.7 61 70-133 16-80 (102)
9 TIGR02739 TraF type-F conjugat 93.1 0.31 6.7E-06 41.5 6.4 59 71-132 154-223 (256)
10 PTZ00051 thioredoxin; Provisio 93.0 0.53 1.1E-05 32.2 6.4 60 71-134 22-82 (98)
11 cd03004 PDI_a_ERdj5_C PDIa fam 92.2 0.54 1.2E-05 32.7 5.7 59 71-132 23-83 (104)
12 cd02949 TRX_NTR TRX domain, no 92.1 1.4 3E-05 30.5 7.7 62 71-136 17-80 (97)
13 cd02961 PDI_a_family Protein D 91.7 0.77 1.7E-05 30.3 5.9 60 70-132 18-81 (101)
14 TIGR01068 thioredoxin thioredo 91.5 1.3 2.8E-05 29.7 6.9 58 71-131 18-77 (101)
15 cd02973 TRX_GRX_like Thioredox 91.3 0.73 1.6E-05 29.6 5.2 48 71-118 3-51 (67)
16 TIGR02740 TraF-like TraF-like 90.7 0.98 2.1E-05 38.2 6.8 62 71-135 170-243 (271)
17 cd03418 GRX_GRXb_1_3_like Glut 90.7 1.6 3.5E-05 28.4 6.6 70 71-147 2-73 (75)
18 TIGR00411 redox_disulf_1 small 90.6 0.93 2E-05 29.8 5.4 64 71-139 3-68 (82)
19 cd02947 TRX_family TRX family; 90.4 2.1 4.4E-05 27.5 6.9 58 71-131 14-72 (93)
20 cd03011 TlpA_like_ScsD_MtbDsbE 90.4 1.8 3.8E-05 30.7 7.0 63 70-135 23-106 (123)
21 PF00085 Thioredoxin: Thioredo 90.4 1.4 3.1E-05 29.7 6.3 59 70-131 20-80 (103)
22 cd02066 GRX_family Glutaredoxi 90.3 3 6.5E-05 26.0 7.6 67 71-145 2-70 (72)
23 cd03419 GRX_GRXh_1_2_like Glut 90.2 1.1 2.3E-05 29.7 5.4 70 71-148 2-76 (82)
24 PRK13703 conjugal pilus assemb 90.2 0.26 5.6E-06 41.8 2.9 60 70-132 146-216 (248)
25 COG3019 Predicted metal-bindin 89.9 1.9 4E-05 34.3 7.3 75 68-148 25-102 (149)
26 cd02956 ybbN ybbN protein fami 89.4 3.5 7.7E-05 28.0 7.7 61 71-135 16-78 (96)
27 TIGR00365 monothiol glutaredox 89.3 3.3 7.2E-05 29.6 7.7 70 70-147 12-89 (97)
28 PRK10877 protein disulfide iso 89.0 0.67 1.5E-05 38.3 4.4 36 69-104 109-147 (232)
29 cd02967 mauD Methylamine utili 89.0 2.4 5.2E-05 29.6 6.7 47 71-117 25-76 (114)
30 cd02997 PDI_a_PDIR PDIa family 88.9 2 4.3E-05 29.3 6.1 58 71-131 21-84 (104)
31 cd03010 TlpA_like_DsbE TlpA-li 88.8 2.1 4.5E-05 30.7 6.5 34 71-104 29-62 (127)
32 cd02951 SoxW SoxW family; SoxW 88.6 2.1 4.5E-05 30.9 6.4 63 71-136 18-99 (125)
33 TIGR02200 GlrX_actino Glutared 88.6 4.2 9.2E-05 26.2 7.3 66 71-141 2-68 (77)
34 PRK11657 dsbG disulfide isomer 88.6 0.6 1.3E-05 39.0 3.9 34 70-103 120-155 (251)
35 cd03002 PDI_a_MPD1_like PDI fa 88.4 1.9 4.1E-05 29.9 5.8 61 70-133 21-85 (109)
36 cd03055 GST_N_Omega GST_N fami 88.0 6.8 0.00015 27.0 9.1 76 63-145 11-87 (89)
37 cd03060 GST_N_Omega_like GST_N 87.8 5.1 0.00011 26.1 7.3 65 72-144 2-68 (71)
38 cd02950 TxlA TRX-like protein 87.6 4.1 8.8E-05 30.9 7.6 63 71-136 24-90 (142)
39 cd02998 PDI_a_ERp38 PDIa famil 87.6 2.2 4.7E-05 29.0 5.6 60 70-132 21-85 (105)
40 cd03027 GRX_DEP Glutaredoxin ( 87.3 4.3 9.4E-05 26.7 6.8 68 70-145 2-71 (73)
41 cd03028 GRX_PICOT_like Glutare 87.0 5.7 0.00012 27.6 7.6 70 70-147 8-85 (90)
42 cd02969 PRX_like1 Peroxiredoxi 87.0 8.8 0.00019 29.2 9.3 35 71-105 29-66 (171)
43 cd02984 TRX_PICOT TRX domain, 86.4 5.7 0.00012 26.8 7.2 61 71-135 18-80 (97)
44 cd03029 GRX_hybridPRX5 Glutare 86.4 7.1 0.00015 25.5 7.7 69 70-146 2-71 (72)
45 TIGR02738 TrbB type-F conjugat 86.2 3.6 7.9E-05 32.0 6.8 36 70-105 53-90 (153)
46 cd03003 PDI_a_ERdj5_N PDIa fam 86.1 1.9 4.1E-05 29.8 4.7 58 71-131 22-81 (101)
47 cd03001 PDI_a_P5 PDIa family, 85.9 1.6 3.5E-05 29.8 4.2 58 71-131 22-81 (103)
48 PRK10638 glutaredoxin 3; Provi 85.8 5.2 0.00011 27.1 6.7 71 70-148 3-75 (83)
49 cd03023 DsbA_Com1_like DsbA fa 85.7 1.2 2.6E-05 32.2 3.7 35 69-103 7-44 (154)
50 PRK03147 thiol-disulfide oxido 85.6 4.4 9.5E-05 30.4 6.9 63 71-136 65-152 (173)
51 cd03020 DsbA_DsbC_DsbG DsbA fa 85.6 1.3 2.9E-05 34.8 4.2 35 69-103 79-113 (197)
52 PRK13728 conjugal transfer pro 85.3 3.3 7.2E-05 33.5 6.4 64 71-135 73-149 (181)
53 cd02972 DsbA_family DsbA famil 85.2 1.6 3.4E-05 28.6 3.8 33 71-103 1-37 (98)
54 cd02975 PfPDO_like_N Pyrococcu 85.2 6.1 0.00013 28.6 7.2 58 71-131 25-84 (113)
55 cd02995 PDI_a_PDI_a'_C PDIa fa 85.2 3 6.6E-05 28.2 5.4 58 70-131 21-82 (104)
56 cd03026 AhpF_NTD_C TRX-GRX-lik 85.0 2 4.3E-05 30.3 4.4 64 70-138 15-79 (89)
57 PRK09381 trxA thioredoxin; Pro 84.8 6.9 0.00015 27.3 7.2 63 70-136 24-88 (109)
58 PF00578 AhpC-TSA: AhpC/TSA fa 84.7 6.4 0.00014 27.6 7.0 34 71-104 29-66 (124)
59 cd02996 PDI_a_ERp44 PDIa famil 84.2 2.2 4.8E-05 29.9 4.5 58 71-131 22-87 (108)
60 TIGR02190 GlrX-dom Glutaredoxi 83.8 9.2 0.0002 25.7 7.3 70 69-146 8-78 (79)
61 cd03041 GST_N_2GST_N GST_N fam 83.7 10 0.00023 25.2 8.4 69 71-147 2-74 (77)
62 cd01659 TRX_superfamily Thiore 82.0 7.2 0.00016 22.1 5.7 36 71-106 1-39 (69)
63 cd02989 Phd_like_TxnDC9 Phosdu 82.0 11 0.00023 27.4 7.4 62 71-136 26-88 (113)
64 PHA03050 glutaredoxin; Provisi 82.0 15 0.00031 27.0 8.2 72 69-146 13-90 (108)
65 PRK10824 glutaredoxin-4; Provi 81.6 13 0.00028 27.9 7.9 70 70-147 16-92 (115)
66 TIGR02183 GRXA Glutaredoxin, G 81.2 15 0.00033 25.3 8.3 73 72-148 3-80 (86)
67 cd03009 TryX_like_TryX_NRX Try 80.8 12 0.00026 27.0 7.3 81 63-147 12-123 (131)
68 PTZ00102 disulphide isomerase; 80.6 12 0.00026 32.8 8.5 77 70-149 52-137 (477)
69 PRK10996 thioredoxin 2; Provis 80.1 14 0.0003 27.7 7.7 62 71-136 56-119 (139)
70 TIGR02196 GlrX_YruB Glutaredox 79.7 6.3 0.00014 24.7 4.9 46 71-118 2-49 (74)
71 PRK11200 grxA glutaredoxin 1; 79.2 17 0.00036 24.6 8.8 74 70-147 2-80 (85)
72 TIGR02187 GlrX_arch Glutaredox 78.6 12 0.00027 29.9 7.4 65 71-139 137-202 (215)
73 cd02968 SCO SCO (an acronym fo 78.6 5.8 0.00013 28.6 5.1 34 71-104 26-66 (142)
74 cd02957 Phd_like Phosducin (Ph 77.5 17 0.00037 25.9 7.2 64 71-139 28-92 (113)
75 cd03005 PDI_a_ERp46 PDIa famil 77.4 13 0.00029 25.0 6.4 59 70-131 19-82 (102)
76 TIGR02181 GRX_bact Glutaredoxi 76.2 18 0.0004 23.8 6.7 68 72-147 2-71 (79)
77 cd03037 GST_N_GRX2 GST_N famil 75.8 18 0.0004 23.2 7.6 67 72-146 2-69 (71)
78 PHA02125 thioredoxin-like prot 75.3 8.9 0.00019 25.6 4.9 44 71-118 2-45 (75)
79 PF13462 Thioredoxin_4: Thiore 75.1 3.1 6.7E-05 30.6 2.8 24 68-91 13-36 (162)
80 cd03061 GST_N_CLIC GST_N famil 74.0 23 0.0005 25.4 7.1 69 77-152 20-88 (91)
81 TIGR03759 conj_TIGR03759 integ 73.5 11 0.00023 31.4 5.8 59 66-124 107-167 (200)
82 PF01323 DSBA: DSBA-like thior 73.5 2.4 5.3E-05 32.2 2.0 34 71-104 2-38 (193)
83 PF13409 GST_N_2: Glutathione 73.5 23 0.00049 23.2 7.0 65 78-147 1-68 (70)
84 cd03019 DsbA_DsbA DsbA family, 73.0 6.6 0.00014 29.4 4.2 37 67-103 15-55 (178)
85 TIGR02187 GlrX_arch Glutaredox 72.6 21 0.00045 28.6 7.2 58 71-131 23-86 (215)
86 PTZ00062 glutaredoxin; Provisi 72.1 27 0.00058 28.6 7.9 70 70-147 114-190 (204)
87 cd02953 DsbDgamma DsbD gamma f 71.4 14 0.0003 25.5 5.3 61 71-135 15-86 (104)
88 cd02948 TRX_NDPK TRX domain, T 71.4 27 0.00058 24.3 6.9 59 71-134 21-82 (102)
89 cd02963 TRX_DnaJ TRX domain, D 70.3 21 0.00045 25.5 6.2 62 71-136 28-92 (111)
90 cd00570 GST_N_family Glutathio 69.7 21 0.00047 21.3 7.2 65 72-144 2-68 (71)
91 cd02954 DIM1 Dim1 family; Dim1 68.7 34 0.00073 25.6 7.2 60 71-134 18-79 (114)
92 TIGR02189 GlrX-like_plant Glut 66.9 30 0.00065 24.7 6.4 72 69-146 8-82 (99)
93 cd02970 PRX_like2 Peroxiredoxi 66.7 7.4 0.00016 28.1 3.2 38 72-109 28-69 (149)
94 COG4545 Glutaredoxin-related p 66.3 10 0.00022 27.4 3.7 37 69-107 2-38 (85)
95 cd02999 PDI_a_ERp44_like PDIa 66.1 16 0.00034 25.8 4.8 58 71-131 22-81 (100)
96 PF13417 GST_N_3: Glutathione 65.9 35 0.00076 22.4 7.5 69 73-148 1-69 (75)
97 PRK15412 thiol:disulfide inter 65.7 16 0.00034 28.6 5.1 32 71-103 72-103 (185)
98 PTZ00443 Thioredoxin domain-co 65.4 47 0.001 27.5 8.0 63 70-136 55-119 (224)
99 cd02962 TMX2 TMX2 family; comp 65.1 36 0.00077 26.5 6.9 63 71-135 51-120 (152)
100 cd03000 PDI_a_TMX3 PDIa family 65.0 17 0.00038 25.2 4.8 58 71-131 19-81 (104)
101 cd03040 GST_N_mPGES2 GST_N fam 64.9 36 0.00077 22.1 8.1 71 70-147 1-73 (77)
102 cd02965 HyaE HyaE family; HyaE 64.7 56 0.0012 24.4 7.7 65 68-136 27-96 (111)
103 PTZ00056 glutathione peroxidas 64.6 27 0.00058 27.9 6.3 48 71-118 43-104 (199)
104 cd02992 PDI_a_QSOX PDIa family 64.1 17 0.00037 26.2 4.7 58 71-131 23-87 (114)
105 smart00594 UAS UAS domain. 63.2 26 0.00056 25.6 5.6 60 71-133 31-97 (122)
106 cd03059 GST_N_SspA GST_N famil 61.8 38 0.00083 21.5 7.1 67 72-147 2-70 (73)
107 cd02994 PDI_a_TMX PDIa family, 59.9 30 0.00065 23.5 5.2 61 70-134 19-82 (101)
108 cd03036 ArsC_like Arsenate Red 59.8 20 0.00044 26.0 4.5 48 72-121 2-54 (111)
109 cd03012 TlpA_like_DipZ_like Tl 59.4 24 0.00051 25.4 4.7 45 61-105 15-64 (126)
110 PF08534 Redoxin: Redoxin; In 59.3 9.6 0.00021 27.8 2.7 23 71-93 32-55 (146)
111 cd00340 GSH_Peroxidase Glutath 59.0 29 0.00064 25.9 5.4 33 71-104 26-61 (152)
112 cd03051 GST_N_GTT2_like GST_N 58.1 44 0.00096 21.0 7.8 67 72-144 2-71 (74)
113 cd02987 Phd_like_Phd Phosducin 57.8 71 0.0015 25.1 7.6 61 71-136 87-148 (175)
114 cd03015 PRX_Typ2cys Peroxiredo 57.1 84 0.0018 23.9 8.7 22 71-92 32-55 (173)
115 PF13848 Thioredoxin_6: Thiore 56.5 75 0.0016 23.6 7.2 64 72-136 100-166 (184)
116 cd03022 DsbA_HCCA_Iso DsbA fam 56.2 11 0.00024 28.6 2.7 33 72-104 2-36 (192)
117 PRK10329 glutaredoxin-like pro 55.8 36 0.00077 23.4 4.9 34 70-105 2-35 (81)
118 PF05768 DUF836: Glutaredoxin- 55.5 35 0.00075 23.2 4.8 45 72-118 3-49 (81)
119 cd02985 TRX_CDSP32 TRX family, 52.4 78 0.0017 22.1 6.8 60 71-134 19-82 (103)
120 cd02993 PDI_a_APS_reductase PD 50.9 81 0.0018 22.1 6.3 59 71-132 25-88 (109)
121 cd02958 UAS UAS family; UAS is 50.7 85 0.0018 22.2 6.4 63 71-136 21-91 (114)
122 TIGR01130 ER_PDI_fam protein d 50.4 72 0.0016 27.4 7.0 58 71-131 22-84 (462)
123 PF13192 Thioredoxin_3: Thiore 49.3 31 0.00068 23.0 3.8 56 75-138 6-63 (76)
124 cd03021 DsbA_GSTK DsbA family, 48.4 30 0.00065 27.4 4.1 35 70-104 2-38 (209)
125 KOG0910 Thioredoxin-like prote 48.4 68 0.0015 25.5 6.0 58 71-131 65-124 (150)
126 cd02971 PRX_family Peroxiredox 48.1 34 0.00074 24.4 4.0 33 73-105 28-64 (140)
127 cd03024 DsbA_FrnE DsbA family, 47.1 27 0.00059 26.7 3.6 32 72-103 2-39 (201)
128 PF13905 Thioredoxin_8: Thiore 46.9 54 0.0012 21.9 4.7 36 71-106 5-44 (95)
129 TIGR01295 PedC_BrcD bacterioci 46.3 90 0.0019 23.0 6.1 60 71-131 27-99 (122)
130 PF06200 tify: tify domain; I 44.9 12 0.00025 23.0 0.9 15 69-83 6-20 (36)
131 COG1651 DsbG Protein-disulfide 44.9 42 0.0009 26.9 4.4 22 70-91 87-108 (244)
132 cd03006 PDI_a_EFP1_N PDIa fami 44.5 50 0.0011 24.2 4.5 58 71-131 33-93 (113)
133 cd03056 GST_N_4 GST_N family, 42.8 84 0.0018 19.7 7.7 64 72-144 2-70 (73)
134 PTZ00102 disulphide isomerase; 42.5 59 0.0013 28.5 5.3 61 71-134 379-443 (477)
135 cd03049 GST_N_3 GST_N family, 42.0 91 0.002 19.9 7.7 69 72-145 2-71 (73)
136 TIGR00385 dsbE periplasmic pro 41.7 59 0.0013 24.9 4.7 32 71-103 67-98 (173)
137 PF04423 Rad50_zn_hook: Rad50 41.2 6.9 0.00015 25.1 -0.5 10 76-85 20-29 (54)
138 TIGR02661 MauD methylamine deh 40.4 44 0.00096 26.2 3.9 32 71-102 78-111 (189)
139 KOG0191 Thioredoxin/protein di 40.1 49 0.0011 28.8 4.4 60 69-131 49-110 (383)
140 cd02977 ArsC_family Arsenate R 39.7 79 0.0017 22.2 4.8 31 72-104 2-32 (105)
141 TIGR02194 GlrX_NrdH Glutaredox 39.7 90 0.0019 20.3 4.8 44 72-117 2-46 (72)
142 cd03072 PDI_b'_ERp44 PDIb' fam 38.5 73 0.0016 23.1 4.5 63 66-131 15-82 (111)
143 TIGR00412 redox_disulf_2 small 37.7 1.1E+02 0.0023 20.4 5.0 59 72-138 3-63 (76)
144 cd03031 GRX_GRX_like Glutaredo 37.5 1.6E+02 0.0034 22.9 6.5 63 78-146 15-81 (147)
145 PLN00410 U5 snRNP protein, DIM 37.5 1.9E+02 0.0042 22.4 7.5 47 72-118 28-76 (142)
146 PRK12559 transcriptional regul 37.0 71 0.0015 24.1 4.4 31 71-103 2-32 (131)
147 COG2999 GrxB Glutaredoxin 2 [P 36.8 19 0.00041 30.0 1.3 14 72-86 3-16 (215)
148 KOG1422 Intracellular Cl- chan 36.5 41 0.00089 28.4 3.2 66 75-147 17-82 (221)
149 cd02976 NrdH NrdH-redoxin (Nrd 35.3 90 0.002 19.1 4.1 33 71-105 2-34 (73)
150 TIGR01617 arsC_related transcr 35.0 71 0.0015 23.1 4.0 32 72-105 2-33 (117)
151 cd03018 PRX_AhpE_like Peroxire 34.2 94 0.002 22.4 4.6 33 73-105 34-70 (149)
152 TIGR00014 arsC arsenate reduct 33.9 96 0.0021 22.6 4.6 47 71-119 1-52 (114)
153 cd03025 DsbA_FrnE_like DsbA fa 33.9 30 0.00066 26.2 2.0 24 70-93 2-25 (193)
154 PRK01655 spxA transcriptional 33.3 68 0.0015 24.1 3.8 32 71-104 2-33 (131)
155 TIGR00424 APS_reduc 5'-adenyly 33.1 2.7E+02 0.0058 25.8 8.2 76 71-149 375-462 (463)
156 cd03034 ArsC_ArsC Arsenate Red 33.1 90 0.002 22.6 4.3 49 71-121 1-54 (112)
157 cd03032 ArsC_Spx Arsenate Redu 33.1 81 0.0017 22.8 4.0 32 71-104 2-33 (115)
158 PHA02540 61 DNA primase; Provi 32.5 88 0.0019 27.8 4.8 73 68-146 256-332 (337)
159 KOG4172 Predicted E3 ubiquitin 32.2 35 0.00076 23.3 1.7 17 76-92 43-59 (62)
160 cd02959 ERp19 Endoplasmic reti 32.0 1.9E+02 0.0042 20.9 5.9 64 71-136 23-90 (117)
161 cd03038 GST_N_etherase_LigE GS 30.5 1.6E+02 0.0035 19.4 5.9 67 76-147 13-80 (84)
162 COG0278 Glutaredoxin-related p 30.2 2.1E+02 0.0046 21.6 5.8 74 69-148 15-94 (105)
163 PHA02278 thioredoxin-like prot 29.1 2.2E+02 0.0047 20.4 7.3 60 71-134 18-83 (103)
164 TIGR03143 AhpF_homolog putativ 29.1 3E+02 0.0066 25.3 7.9 65 71-138 370-439 (555)
165 PRK10026 arsenate reductase; P 28.9 1.1E+02 0.0024 23.7 4.4 47 70-118 3-54 (141)
166 COG0695 GrxC Glutaredoxin and 28.7 1.9E+02 0.0042 19.7 5.7 28 78-105 10-37 (80)
167 PRK10954 periplasmic protein d 28.1 91 0.002 24.7 3.9 18 70-87 40-57 (207)
168 PF00462 Glutaredoxin: Glutare 28.1 1.5E+02 0.0033 18.3 4.4 41 72-114 2-43 (60)
169 TIGR02182 GRXB Glutaredoxin, G 27.9 3E+02 0.0065 21.6 7.5 68 73-148 2-70 (209)
170 PF05184 SapB_1: Saposin-like 27.4 16 0.00035 21.3 -0.5 19 76-94 1-19 (39)
171 COG1651 DsbG Protein-disulfide 27.1 45 0.00098 26.7 1.9 34 70-103 121-154 (244)
172 cd03073 PDI_b'_ERp72_ERp57 PDI 26.8 1.2E+02 0.0027 22.0 4.1 42 94-136 47-91 (111)
173 PLN02335 anthranilate synthase 26.6 98 0.0021 25.2 3.9 78 63-150 12-89 (222)
174 cd02988 Phd_like_VIAF Phosduci 26.5 2E+02 0.0044 23.0 5.6 59 71-136 106-165 (192)
175 PRK13344 spxA transcriptional 26.4 1.4E+02 0.0029 22.6 4.4 31 71-103 2-32 (132)
176 PRK00522 tpx lipid hydroperoxi 26.0 1.4E+02 0.0031 22.7 4.5 42 62-103 37-82 (167)
177 PRK10382 alkyl hydroperoxide r 26.0 2.5E+02 0.0055 22.3 6.1 19 73-91 37-56 (187)
178 PLN02378 glutathione S-transfe 26.0 2.5E+02 0.0054 22.1 6.0 63 77-147 18-81 (213)
179 PLN02399 phospholipid hydroper 25.8 2E+02 0.0042 24.1 5.6 34 71-104 103-139 (236)
180 PRK10387 glutaredoxin 2; Provi 25.4 3.1E+02 0.0067 20.9 8.3 69 72-148 2-71 (210)
181 cd02986 DLP Dim1 family, Dim1- 25.1 3E+02 0.0065 20.7 6.7 57 72-131 19-77 (114)
182 PLN02412 probable glutathione 25.0 85 0.0018 24.1 3.1 34 72-105 34-70 (167)
183 COG0526 TrxA Thiol-disulfide i 24.5 84 0.0018 19.9 2.6 42 75-116 40-84 (127)
184 cd00158 RHOD Rhodanese Homolog 24.3 1.7E+02 0.0038 18.6 4.1 26 68-93 49-74 (89)
185 PF06053 DUF929: Domain of unk 24.0 1.3E+02 0.0028 25.7 4.2 40 67-106 56-98 (249)
186 PF03660 PHF5: PHF5-like prote 23.9 30 0.00064 26.1 0.3 13 76-88 27-39 (106)
187 cd03016 PRX_1cys Peroxiredoxin 23.9 3.7E+02 0.0079 21.2 8.6 17 76-92 35-51 (203)
188 cd03054 GST_N_Metaxin GST_N fa 23.8 2E+02 0.0044 18.3 4.5 56 78-147 15-70 (72)
189 PF02662 FlpD: Methyl-viologen 23.1 59 0.0013 24.4 1.8 40 75-129 62-101 (124)
190 cd03014 PRX_Atyp2cys Peroxired 23.0 1.2E+02 0.0025 21.9 3.4 43 63-105 20-66 (143)
191 TIGR00862 O-ClC intracellular 23.0 4E+02 0.0087 22.1 6.9 64 77-148 17-81 (236)
192 cd02955 SSP411 TRX domain, SSP 23.0 2.1E+02 0.0045 21.3 4.8 64 72-139 20-97 (124)
193 cd03045 GST_N_Delta_Epsilon GS 22.8 2.1E+02 0.0045 18.0 7.9 66 71-145 1-71 (74)
194 PF14451 Ub-Mut7C: Mut7-C ubiq 22.6 1.3E+02 0.0027 21.2 3.3 43 86-130 13-55 (81)
195 PRK13191 putative peroxiredoxi 22.2 4.3E+02 0.0092 21.4 8.0 41 110-150 107-161 (215)
196 PRK15317 alkyl hydroperoxide r 21.4 1.5E+02 0.0033 26.8 4.4 49 70-118 119-168 (517)
197 PF14595 Thioredoxin_9: Thiore 21.0 1.9E+02 0.0041 21.7 4.2 64 69-135 43-110 (129)
198 smart00450 RHOD Rhodanese Homo 20.5 1.9E+02 0.0041 18.5 3.7 26 68-93 55-80 (100)
199 cd03008 TryX_like_RdCVF Trypar 20.1 2.8E+02 0.0061 21.4 5.1 74 63-137 19-127 (146)
No 1
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=99.87 E-value=4e-22 Score=154.43 Aligned_cols=82 Identities=39% Similarity=0.615 Sum_probs=77.0
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHHH
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITV 148 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr~ 148 (154)
...+|+|||+|+||+++|+||+++|+.++|+|+++|++.|+++++.+|+++++. ++++++++ |+.|.+|||++++++.
T Consensus 8 p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~~l~~~~l~~~~~-~s~~~~~~-g~~~~~sdA~~~i~~~ 85 (137)
T COG3011 8 PDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQALLEAAGLDPEDV-DSVLLVEA-GQLLVGSDAAIRILRL 85 (137)
T ss_pred CCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhhHHhhcCCChhhh-heeeEecC-CceEeccHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999996 79988876 7789999999999999
Q ss_pred cCCC
Q 031708 149 NGKP 152 (154)
Q Consensus 149 lg~p 152 (154)
+++|
T Consensus 86 L~~~ 89 (137)
T COG3011 86 LPGP 89 (137)
T ss_pred CCcc
Confidence 9966
No 2
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=99.82 E-value=4.7e-20 Score=134.24 Aligned_cols=78 Identities=26% Similarity=0.378 Sum_probs=71.8
Q ss_pred EEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce-EEEehHHHHHHHHHcCC
Q 031708 73 VIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL-YHQASTGGGWGITVNGK 151 (154)
Q Consensus 73 VfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~-~y~gSdAvl~ilr~lg~ 151 (154)
|||||+|+||+++|+|++++|+.++|+|+++|++.+.++++.+|++.+++++.+++ .++|+ +|.|+||++++++.+++
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~~~ 79 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRLPG 79 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHcCc
Confidence 69999999999999999999999999999999999998889999999999766766 55565 99999999999999987
No 3
>PF13728 TraF: F plasmid transfer operon protein
Probab=95.48 E-value=0.05 Score=44.61 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=41.2
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcE--EEEEcCCc---------ccHhHHHhcCCChhhccceEEEEECCc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKI--KFCCLQSQ---------AAEPYLRLCGLDREDVLRRFLFVEGPG 133 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~--~F~~iQS~---------~g~~lL~~~Gl~~e~~~~Sivlid~~G 133 (154)
.++||+|.|++|+...--|+....+..| ..+++.+. ....+.+++|+.. . =++++++.++
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~--~-Pal~Lv~~~~ 194 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKV--T-PALFLVNPNT 194 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCc--C-CEEEEEECCC
Confidence 7899999999999999988876655544 44555431 1244567888852 2 3777777654
No 4
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=94.93 E-value=0.12 Score=34.78 Aligned_cols=65 Identities=9% Similarity=0.166 Sum_probs=43.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCC---CcEEEEEcCCccc-----------------------HhHHHhcCCChhhccc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKY---RKIKFCCLQSQAA-----------------------EPYLRLCGLDREDVLR 124 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~---~r~~F~~iQS~~g-----------------------~~lL~~~Gl~~e~~~~ 124 (154)
.+.||...|+.|.....-+.+.-.+ ..+.++.+..... .++.+.+|+.. . -
T Consensus 23 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-P 99 (116)
T cd02966 23 LVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG--L-P 99 (116)
T ss_pred EEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc--c-c
Confidence 5678888999999888766554322 4677777766543 45566777642 2 3
Q ss_pred eEEEEECCceEEEe
Q 031708 125 RFLFVEGPGLYHQA 138 (154)
Q Consensus 125 Sivlid~~G~~y~g 138 (154)
+++++|++|++...
T Consensus 100 ~~~l~d~~g~v~~~ 113 (116)
T cd02966 100 TTFLIDRDGRIRAR 113 (116)
T ss_pred eEEEECCCCcEEEE
Confidence 67788888876543
No 5
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.36 E-value=0.16 Score=33.72 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=48.2
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccH-----hHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAE-----PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI 146 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~-----~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il 146 (154)
++|+--.|+.|....+++.++.-.+.+.+..++..... .+.+.+|.. .+ =+ +++ +|+...|++-++.+.
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~--~v-P~-v~i--~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQR--TV-PN-IFI--NGKFIGGCSDLLALY 75 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCC--CC-Ce-EEE--CCEEEcCHHHHHHHH
Confidence 68889999999999999999885555888888653221 122333432 12 12 344 467788999888876
Q ss_pred HH
Q 031708 147 TV 148 (154)
Q Consensus 147 r~ 148 (154)
+.
T Consensus 76 ~~ 77 (84)
T TIGR02180 76 KS 77 (84)
T ss_pred Hc
Confidence 53
No 6
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=93.80 E-value=0.28 Score=33.84 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=48.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.++|++.+|+=|......+.+..+ ++++.|+.+.......+++.+|+..+.. =+++++..
T Consensus 16 ~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~-P~~~~~~~ 77 (103)
T cd02982 16 LVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDL-PVIAIINL 77 (103)
T ss_pred EEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhC-CEEEEEec
Confidence 566788899999999998877553 4789999999988888999999986555 47777765
No 7
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=93.73 E-value=0.18 Score=35.36 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=36.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHc---C--CCcEEEEEcCCccc--------------------HhHHHhcCCChhhccc
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRAD---K--YRKIKFCCLQSQAA--------------------EPYLRLCGLDREDVLR 124 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~D---r--~~r~~F~~iQS~~g--------------------~~lL~~~Gl~~e~~~~ 124 (154)
..++|+|-+|+.|...-..+.... . +.++.++.+..... .++...+|+.- -.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g-tP-- 84 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG-TP-- 84 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S-SS--
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc-cC--
Confidence 367888999999998877776421 1 22344444433222 34667777743 23
Q ss_pred eEEEEECCce
Q 031708 125 RFLFVEGPGL 134 (154)
Q Consensus 125 Sivlid~~G~ 134 (154)
+++++|.+|+
T Consensus 85 t~~~~d~~G~ 94 (112)
T PF13098_consen 85 TIVFLDKDGK 94 (112)
T ss_dssp EEEECTTTSC
T ss_pred EEEEEcCCCC
Confidence 7888887777
No 8
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=93.47 E-value=0.45 Score=32.23 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=44.3
Q ss_pred CeEEEEcCCCcchHHHHHHHHH----HcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCc
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIR----ADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG 133 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r----~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G 133 (154)
-.+.||..+|+.|......+.+ .+..+++.|+.+.......+.+.+|+.. + -++++++.++
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~--~-P~~~~~~~~~ 80 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG--F-PTIKFFPKGK 80 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc--C-CEEEEecCCC
Confidence 3788999999999986554433 3223379999888877788888999843 3 4787887655
No 9
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=93.09 E-value=0.31 Score=41.46 Aligned_cols=59 Identities=10% Similarity=0.025 Sum_probs=39.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcE--EEEEcCCccc---------HhHHHhcCCChhhccceEEEEECC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKI--KFCCLQSQAA---------EPYLRLCGLDREDVLRRFLFVEGP 132 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~--~F~~iQS~~g---------~~lL~~~Gl~~e~~~~Sivlid~~ 132 (154)
.++||.|+|++|+..+--|+....+..| ..+++.+..- ..+.+++|+.. . =++++++.+
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~--~-Pal~Lv~~~ 223 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY--F-PALYLVNPK 223 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc--C-ceEEEEECC
Confidence 7999999999999999999776654444 5555554311 22456777754 2 367777764
No 10
>PTZ00051 thioredoxin; Provisional
Probab=92.95 E-value=0.53 Score=32.18 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=44.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~ 134 (154)
.+.||-.+|+-|......+.+...+ ..+.|+.+.......+.+++++.. + =++++..+ |+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~-g~ 82 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITS--M-PTFKVFKN-GS 82 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCce--e-eEEEEEeC-Ce
Confidence 5789999999999998887665433 358888888777778889999842 2 25666653 44
No 11
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=92.15 E-value=0.54 Score=32.66 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=43.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGP 132 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~ 132 (154)
.+.||-.+|+.|......+.+.-. .+.+.|+.+.-.....+.+.+|+.. . =+++++.++
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~--~-Pt~~~~~~g 83 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRA--Y-PTIRLYPGN 83 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCc--c-cEEEEEcCC
Confidence 577999999999998877755432 3568888888777778888898843 2 367777653
No 12
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=92.06 E-value=1.4 Score=30.52 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=43.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
.++||...|+.|......+...- ..+++.|..+.-....++..++|+.. . -+++++++ |+..
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~--v-Pt~~i~~~-g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMG--T-PTVQFFKD-KELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCee--c-cEEEEEEC-CeEE
Confidence 57788999999999988885522 23568888777666667788888842 3 36777764 5544
No 13
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=91.73 E-value=0.77 Score=30.34 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=45.1
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHc----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGP 132 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~D----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~ 132 (154)
-.+.||...|+.|......+.+.. +...+.|..+.-.....+.+++|+.. . =++++++++
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~-Pt~~~~~~~ 81 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG--Y-PTIKLFPNG 81 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC--C-CEEEEEcCC
Confidence 467788888999999888765532 24789999998776678889999853 2 378888765
No 14
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=91.49 E-value=1.3 Score=29.66 Aligned_cols=58 Identities=16% Similarity=0.196 Sum_probs=42.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||-.+|+.|......+.+. +..+++.|.-+.......+.+++|+.. . =+++++.+
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-P~~~~~~~ 77 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRS--I-PTLLLFKN 77 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCc--C-CEEEEEeC
Confidence 5778999999999988777554 334568888887666677888999863 2 36777754
No 15
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=91.27 E-value=0.73 Score=29.63 Aligned_cols=48 Identities=15% Similarity=0.121 Sum_probs=35.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLD 118 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~ 118 (154)
.++|+=-.|+.|.....++.+... .+.+.|.-+.-...+++.+.+|+.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~ 51 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVM 51 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCc
Confidence 578889999999999999977633 235777666555556677888874
No 16
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=90.73 E-value=0.98 Score=38.23 Aligned_cols=62 Identities=8% Similarity=0.187 Sum_probs=41.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCC--cEEEEEcCCcc---------cHhHHHhcCCChhhccceEEEEEC-CceE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYR--KIKFCCLQSQA---------AEPYLRLCGLDREDVLRRFLFVEG-PGLY 135 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~--r~~F~~iQS~~---------g~~lL~~~Gl~~e~~~~Sivlid~-~G~~ 135 (154)
.+.||-++|+.|...+--|.+.-.+. .+.++++.+.. ...+.+.+|+.. + =++++++. +|.+
T Consensus 170 Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~--v-Ptl~Lv~~~~~~v 243 (271)
T TIGR02740 170 LFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT--V-PAVFLADPDPNQF 243 (271)
T ss_pred EEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc--C-CeEEEEECCCCEE
Confidence 67799999999999998887655443 45556655421 123567888743 3 47888886 4544
No 17
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=90.66 E-value=1.6 Score=28.44 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=45.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc--ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~--~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr 147 (154)
.+||.=-.|+.|....+++.+++- .+.+..+... ..+++.+..|.... + =.++++ |+...|.+.+..+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i--~~~~i~i~~~~~~~~~~~~~~~~~~~-v--P~v~i~--g~~igg~~~~~~~~~ 73 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGV--DYEEIDVDGDPALREEMINRSGGRRT-V--PQIFIG--DVHIGGCDDLYALER 73 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCC--cEEEEECCCCHHHHHHHHHHhCCCCc-c--CEEEEC--CEEEeChHHHHHHHh
Confidence 456666789999999999988753 6778888653 22333344443211 2 134554 677899998887765
No 18
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=90.65 E-value=0.93 Score=29.83 Aligned_cols=64 Identities=8% Similarity=0.071 Sum_probs=44.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEeh
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQAS 139 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gS 139 (154)
.+||+--+|+.|......+.+.- .+..+.+..+.-....++.+.+|+..- . ++++ ++ +..+.|.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~v-P--t~~~-~g-~~~~~G~ 68 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAV-P--AIVI-NG-DVEFIGA 68 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccC-C--EEEE-CC-EEEEecC
Confidence 57899999999999999987642 234577777766667778889987642 2 5554 43 2244553
No 19
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=90.44 E-value=2.1 Score=27.49 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=42.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.++||-..|+.|......+.+.-. .+.+.|..+.-.....+.+.+|+.. -+ ++++..+
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~-~P--~~~~~~~ 72 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRS-IP--TFLFFKN 72 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCccc-cc--EEEEEEC
Confidence 678899999999998888866443 3678888776666667888888854 23 6666654
No 20
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=90.40 E-value=1.8 Score=30.69 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=39.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc---------------------ccHhHHHhcCCChhhccceEEE
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ---------------------AAEPYLRLCGLDREDVLRRFLF 128 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~---------------------~g~~lL~~~Gl~~e~~~~Sivl 128 (154)
-.+.||-+.|+.|......+.+.-.+-.+..+...+. ...++.+.+++.. . -++++
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~--~-P~~~v 99 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSV--T-PAIVI 99 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCc--c-cEEEE
Confidence 3677899999999999888876554434433333321 1124556666643 2 36778
Q ss_pred EECCceE
Q 031708 129 VEGPGLY 135 (154)
Q Consensus 129 id~~G~~ 135 (154)
++.+|..
T Consensus 100 id~~gi~ 106 (123)
T cd03011 100 VDPGGIV 106 (123)
T ss_pred EcCCCeE
Confidence 8877743
No 21
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=90.36 E-value=1.4 Score=29.68 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=46.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
-.+.||-..|+-|......+.+... .+.+.|..+.-.....+.+++++.. + =+++++.+
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~--~-Pt~~~~~~ 80 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKS--V-PTIIFFKN 80 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSS--S-SEEEEEET
T ss_pred EEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCC--C-CEEEEEEC
Confidence 3678999999999999987755432 3379999998888889999999854 2 37777765
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=90.34 E-value=3 Score=25.96 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=42.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc-cHhHHH-hcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLR-LCGLDREDVLRRFLFVEGPGLYHQASTGGGWG 145 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~-g~~lL~-~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i 145 (154)
.++|.-..|+.|.....++.++. -.+...++.... ..+.+. ..|. ..+ =.+++ +|+...|++.+..+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--i~~~~~di~~~~~~~~~l~~~~~~--~~~--P~~~~--~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--IEFEEIDILEDGELREELKELSGW--PTV--PQIFI--NGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--CcEEEEECCCCHHHHHHHHHHhCC--CCc--CEEEE--CCEEEecHHHHHHh
Confidence 56778899999999999998886 467778886543 122222 2232 111 12333 47778888877654
No 23
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=90.24 E-value=1.1 Score=29.70 Aligned_cols=70 Identities=16% Similarity=0.123 Sum_probs=44.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCccc-H----hHHHhcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-E----PYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWG 145 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g-~----~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i 145 (154)
.++|+--.|+.|....+++.++.- .+.+..++.... . .+-+..|.. .+ -.++++ |....|.+-+..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~g~~--~~--P~v~~~--g~~igg~~~~~~~ 73 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV--KPAVVELDQHEDGSEIQDYLQELTGQR--TV--PNVFIG--GKFIGGCDDLMAL 73 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC--CcEEEEEeCCCChHHHHHHHHHHhCCC--CC--CeEEEC--CEEEcCHHHHHHH
Confidence 567777899999999999999876 566667655332 1 122223321 11 134443 6778888888777
Q ss_pred HHH
Q 031708 146 ITV 148 (154)
Q Consensus 146 lr~ 148 (154)
.+.
T Consensus 74 ~~~ 76 (82)
T cd03419 74 HKS 76 (82)
T ss_pred HHc
Confidence 653
No 24
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=90.20 E-value=0.26 Score=41.78 Aligned_cols=60 Identities=7% Similarity=0.030 Sum_probs=39.3
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEE--EEcCCccc---------HhHHHhcCCChhhccceEEEEECC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKF--CCLQSQAA---------EPYLRLCGLDREDVLRRFLFVEGP 132 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F--~~iQS~~g---------~~lL~~~Gl~~e~~~~Sivlid~~ 132 (154)
-.+.||.|+|++|+..+--|+....+..|.. +++.+... ....+..|+.. . =++++++.+
T Consensus 146 GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~--~-PAl~Lv~~~ 216 (248)
T PRK13703 146 GLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY--F-PALMLVDPK 216 (248)
T ss_pred eEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc--c-ceEEEEECC
Confidence 4799999999999999999988776555555 44443111 11235667643 3 367777654
No 25
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=89.92 E-value=1.9 Score=34.29 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEE---ehHHHHH
Q 031708 68 LQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQ---ASTGGGW 144 (154)
Q Consensus 68 ~~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~---gSdAvl~ 144 (154)
..++++++|-.|+=|+.|++.++..+ |..-.........+-+++||+.+- .|-|=..-+|.+.. -.+|+.+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~G----f~Vk~~~~~d~~alK~~~gIp~e~--~SCHT~VI~Gy~vEGHVPa~aI~~ 98 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANG----FEVKVVETDDFLALKRRLGIPYEM--QSCHTAVINGYYVEGHVPAEAIAR 98 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCC----cEEEEeecCcHHHHHHhcCCChhh--ccccEEEEcCEEEeccCCHHHHHH
Confidence 35689999999999999999998544 333333333355655679998763 34433322344333 3677777
Q ss_pred HHHH
Q 031708 145 GITV 148 (154)
Q Consensus 145 ilr~ 148 (154)
++..
T Consensus 99 ll~~ 102 (149)
T COG3019 99 LLAE 102 (149)
T ss_pred HHhC
Confidence 6654
No 26
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=89.37 E-value=3.5 Score=27.96 Aligned_cols=61 Identities=8% Similarity=0.030 Sum_probs=45.1
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY 135 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~ 135 (154)
.+.||-.+|+-|......+.+.. -.+.+.|..+.-.....+.+++++.. + =++++++ +|+.
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~-~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQA--L-PTVYLFA-AGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCC--C-CEEEEEe-CCEE
Confidence 57799999999999988775533 23568888888777888888999853 2 3677776 4553
No 27
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.30 E-value=3.3 Score=29.56 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=43.6
Q ss_pred CeEEEEc------CCCcchHHHHHHHHHHcCCCcEEEEEcC-CcccHhHHHh-cCCChhhccceEEEEECCceEEEehHH
Q 031708 70 PGVVIYD------GVCHLCHGGVKWVIRADKYRKIKFCCLQ-SQAAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTG 141 (154)
Q Consensus 70 ~~vVfYD------G~C~LC~~~V~fl~r~Dr~~r~~F~~iQ-S~~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdA 141 (154)
..+|+|= -.|++|.+..+++..+.- .+...++. .+..++.+.. .|.. .+ =.++++ |++..|.|.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i--~~~~~di~~~~~~~~~l~~~tg~~--tv--P~vfi~--g~~iGG~dd 83 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGV--PFAYVNVLEDPEIRQGIKEYSNWP--TI--PQLYVK--GEFVGGCDI 83 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCC--CEEEEECCCCHHHHHHHHHHhCCC--CC--CEEEEC--CEEEeChHH
Confidence 4566663 369999999999988754 57777773 3333333332 2321 11 134664 777889998
Q ss_pred HHHHHH
Q 031708 142 GGWGIT 147 (154)
Q Consensus 142 vl~ilr 147 (154)
+..+.+
T Consensus 84 l~~l~~ 89 (97)
T TIGR00365 84 IMEMYQ 89 (97)
T ss_pred HHHHHH
Confidence 877664
No 28
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=89.01 E-value=0.67 Score=38.27 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=27.5
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHcCCC-cEEEE--EcC
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRADKYR-KIKFC--CLQ 104 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~-r~~F~--~iQ 104 (154)
...++|.|=+|++|++.-..+.+.+..+ +++|. |+.
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~ 147 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQ 147 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCC
Confidence 3478999999999999999998876544 45553 553
No 29
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=88.98 E-value=2.4 Score=29.59 Aligned_cols=47 Identities=11% Similarity=0.230 Sum_probs=30.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEc---CCcccHhHHHhcCC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCL---QSQAAEPYLRLCGL 117 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~i---QS~~g~~lL~~~Gl 117 (154)
.+.||-.+|+.|......+.+... .+.+.++.+ ..+...+.++.+++
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGL 76 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCC
Confidence 467888899999999888876442 244655555 22334445566665
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=88.90 E-value=2 Score=29.27 Aligned_cols=58 Identities=14% Similarity=0.148 Sum_probs=38.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHH----cCCCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRA----DKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~----Dr~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||-.+|+.|......+.+. ...+.+.|+.+.-.. ...+.+++|+.. -. ++++..+
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~-~P--t~~~~~~ 84 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKG-FP--TFKYFEN 84 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcc-cc--EEEEEeC
Confidence 5889999999999987555332 223567777655444 677888888843 23 5666654
No 31
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=88.80 E-value=2.1 Score=30.74 Aligned_cols=34 Identities=6% Similarity=0.227 Sum_probs=27.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQ 104 (154)
.+.||-..|+-|......+.+...+..+.++.+.
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~ 62 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGIN 62 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 5779999999999999999777655557666665
No 32
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=88.63 E-value=2.1 Score=30.87 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=38.8
Q ss_pred eEEEEcCCCcchHHHHHHHH---H--HcCCCcEEEEEcC--Cc-----------ccHhHHHhcCCChhhccceEEEEECC
Q 031708 71 GVVIYDGVCHLCHGGVKWVI---R--ADKYRKIKFCCLQ--SQ-----------AAEPYLRLCGLDREDVLRRFLFVEGP 132 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~---r--~Dr~~r~~F~~iQ--S~-----------~g~~lL~~~Gl~~e~~~~Sivlid~~ 132 (154)
.+.|+-.+|+.|......+. . ...++.+.++-+. +. ...++...+++.. + =++++++++
T Consensus 18 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~--~-Pt~~~~~~~ 94 (125)
T cd02951 18 LLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRF--T-PTVIFLDPE 94 (125)
T ss_pred EEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCcc--c-cEEEEEcCC
Confidence 57789999999999876442 1 1112356565543 22 1246667888743 3 378888876
Q ss_pred -ceEE
Q 031708 133 -GLYH 136 (154)
Q Consensus 133 -G~~y 136 (154)
|+..
T Consensus 95 gg~~~ 99 (125)
T cd02951 95 GGKEI 99 (125)
T ss_pred CCcee
Confidence 5543
No 33
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=88.60 E-value=4.2 Score=26.17 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=39.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceEEEehHH
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTG 141 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdA 141 (154)
.+||+-..|+.|.....++.++.- .+.++++... ...+.+...+.....+ =++ +++ +|....+...
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~--~~~~idi~~~~~~~~~~~~~~~~~~~v-P~i-~~~-~g~~l~~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA--AYEWVDIEEDEGAADRVVSVNNGNMTV-PTV-KFA-DGSFLTNPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC--ceEEEeCcCCHhHHHHHHHHhCCCcee-CEE-EEC-CCeEecCCCH
Confidence 579999999999999999977753 5778887543 2222333322222233 233 333 4665655554
No 34
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=88.59 E-value=0.6 Score=39.00 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=25.9
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCC--cEEEEEc
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYR--KIKFCCL 103 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~--r~~F~~i 103 (154)
..+||+|=+|++|++.-+.+......+ ++++.++
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 378999999999999988877654445 4566654
No 35
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=88.37 E-value=1.9 Score=29.87 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=40.9
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCc
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPG 133 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G 133 (154)
-.+.||-.+|+.|.....-+.+.. ..+.+.|+.+.-.. ...+...+++.. . =+++++++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~--~-Pt~~~~~~~~ 85 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQG--F-PTLKVFRPPK 85 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCc--C-CEEEEEeCCC
Confidence 467899999999998766554432 23556666554443 667788888753 3 3777777654
No 36
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=88.01 E-value=6.8 Score=26.97 Aligned_cols=76 Identities=8% Similarity=-0.146 Sum_probs=43.7
Q ss_pred CCCCCCCCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccH-hHHHhcCCChhhccceEEEEECCceEEEehHH
Q 031708 63 MEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAE-PYLRLCGLDREDVLRRFLFVEGPGLYHQASTG 141 (154)
Q Consensus 63 ~~p~~~~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~-~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdA 141 (154)
..|+.....+|++-..|+.|.+...++..+.- .+.++.+...... .+.+..+. . .+ =++++++|.....|.|
T Consensus 11 ~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl--~~~~~~v~~~~~~~~~~~~np~-~-~v---PvL~~~~g~~l~eS~a 83 (89)
T cd03055 11 EPPPVPGIIRLYSMRFCPYAQRARLVLAAKNI--PHEVININLKDKPDWFLEKNPQ-G-KV---PALEIDEGKVVYESLI 83 (89)
T ss_pred CCCCCCCcEEEEeCCCCchHHHHHHHHHHcCC--CCeEEEeCCCCCcHHHHhhCCC-C-Cc---CEEEECCCCEEECHHH
Confidence 44555567888999999999987777766543 3555555432222 22222111 1 11 1233344677889988
Q ss_pred HHHH
Q 031708 142 GGWG 145 (154)
Q Consensus 142 vl~i 145 (154)
++.-
T Consensus 84 I~~y 87 (89)
T cd03055 84 ICEY 87 (89)
T ss_pred HHHh
Confidence 8753
No 37
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=87.80 E-value=5.1 Score=26.10 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=38.5
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCccc-HhHHHhcCCChhhccceE-EEEECCceEEEehHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGW 144 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g-~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ 144 (154)
++++=..|++|.+....+..++- .+.++.+..... .++++. .+. ..+ ++++++|.....|.|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl--~~e~~~v~~~~~~~~~~~~---np~---~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI--TVELREVELKNKPAEMLAA---SPK---GTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC--CcEEEEeCCCCCCHHHHHH---CCC---CCCCEEEECCCcEEecHHHHHH
Confidence 56777889999998777776654 355555443222 233322 222 122 234455777889988765
No 38
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=87.60 E-value=4.1 Score=30.86 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=42.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CC--cEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YR--KIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~--r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
.+.||=.+|+-|......+.+... .+ +|.++.+.......+.+.|++.. + =++++++.+|+..
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~--i-Pt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG--I-PHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC--C-CEEEEECCCCCEE
Confidence 566888899999999888766432 23 45555666544556788998853 3 4788887666544
No 39
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=87.56 E-value=2.2 Score=28.96 Aligned_cols=60 Identities=10% Similarity=0.121 Sum_probs=42.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHc----CCCcEEEEEcCCcc-cHhHHHhcCCChhhccceEEEEECC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLFVEGP 132 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~D----r~~r~~F~~iQS~~-g~~lL~~~Gl~~e~~~~Sivlid~~ 132 (154)
-.+.||...|+.|......+.... ..+.+.|..+.... ...+.+++++.. . =++++++.+
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~--~-P~~~~~~~~ 85 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSG--F-PTLKFFPKG 85 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCC--c-CEEEEEeCC
Confidence 367899999999987766654422 23579998887766 667788888853 2 367777654
No 40
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=87.31 E-value=4.3 Score=26.72 Aligned_cols=68 Identities=9% Similarity=-0.104 Sum_probs=44.7
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWG 145 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i 145 (154)
+.+||.=-.|+.|....+++.+++- .+.+.++.... .+++.+..|-. .+ =.+++ +|++..|.+.+..+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi--~~~~~di~~~~~~~~el~~~~g~~--~v--P~v~i--~~~~iGg~~~~~~~ 71 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGL--PYVEINIDIFPERKAELEERTGSS--VV--PQIFF--NEKLVGGLTDLKSL 71 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCC--ceEEEECCCCHHHHHHHHHHhCCC--Cc--CEEEE--CCEEEeCHHHHHhh
Confidence 4567777789999999999998764 68888886532 33444444431 12 13344 46778888887654
No 41
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=87.01 E-value=5.7 Score=27.65 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=43.2
Q ss_pred CeEEEEc-C-----CCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHh-cCCChhhccceEEEEECCceEEEehHH
Q 031708 70 PGVVIYD-G-----VCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRL-CGLDREDVLRRFLFVEGPGLYHQASTG 141 (154)
Q Consensus 70 ~~vVfYD-G-----~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~-~Gl~~e~~~~Sivlid~~G~~y~gSdA 141 (154)
.++|+|= | .|++|.+..+++..+. -.+...++... ..++.+.. .|-. .+ =.++++ |+++.|.+-
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~--i~y~~idv~~~~~~~~~l~~~~g~~--tv--P~vfi~--g~~iGG~~~ 79 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLG--VDFGTFDILEDEEVRQGLKEYSNWP--TF--PQLYVN--GELVGGCDI 79 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC--CCeEEEEcCCCHHHHHHHHHHhCCC--CC--CEEEEC--CEEEeCHHH
Confidence 4566663 3 8999999999998775 36777777432 22233333 2321 22 134664 778889888
Q ss_pred HHHHHH
Q 031708 142 GGWGIT 147 (154)
Q Consensus 142 vl~ilr 147 (154)
+..+.+
T Consensus 80 l~~l~~ 85 (90)
T cd03028 80 VKEMHE 85 (90)
T ss_pred HHHHHH
Confidence 777544
No 42
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=86.97 E-value=8.8 Score=29.16 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=24.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS 105 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS 105 (154)
.+.||.-.|+.|.....-+.++- .+.++.|+.+..
T Consensus 29 ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~ 66 (171)
T cd02969 29 VVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINS 66 (171)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEec
Confidence 57789999999998666554433 234688887754
No 43
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=86.37 E-value=5.7 Score=26.80 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=45.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLY 135 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~ 135 (154)
.+.||=.+|+-|......+.+... ...+.|..+......++.+++|+.. + =+++++.+ |+.
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~--~-Pt~~~~~~-g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITA--V-PTFVFFRN-GTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCcc--c-cEEEEEEC-CEE
Confidence 577999999999998887766443 3588999888776777888899854 3 36777764 553
No 44
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=86.35 E-value=7.1 Score=25.51 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=42.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc-cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI 146 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~-g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il 146 (154)
+.+||-=-.|++|.+..+++.+++ =.+...++.... ++++....|.. .+ =.++++ |.+..|++.+...+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~--i~~~~~~v~~~~~~~~~~~~~g~~--~v--P~ifi~--g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENG--ISYEEIPLGKDITGRSLRAVTGAM--TV--PQVFID--GELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcC--CCcEEEECCCChhHHHHHHHhCCC--Cc--CeEEEC--CEEEeCHHHHHHHh
Confidence 356666678999999999998764 357777776543 22222222321 12 123553 66788888776654
No 45
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=86.15 E-value=3.6 Score=32.00 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=26.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcE--EEEEcCC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKI--KFCCLQS 105 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~--~F~~iQS 105 (154)
..+.||-.+|+.|..++-.+.+.-++..+ ..+.+..
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~ 90 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDG 90 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 48889999999999999988776544334 4444543
No 46
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=86.08 E-value=1.9 Score=29.85 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=42.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||-.+|+-|......+.+... ++.+.|..+.-.....+.+++++.. . =++++...
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~ 81 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNS--Y-PSLYVFPS 81 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCc--c-CEEEEEcC
Confidence 577999999999998877655432 3568888887776778888888842 3 36766643
No 47
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=85.86 E-value=1.6 Score=29.78 Aligned_cols=58 Identities=12% Similarity=0.085 Sum_probs=41.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||-..|+.|......+.+.. -.+.+.|..+.......+.+++|+.. -. ++++++.
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~-~P--~~~~~~~ 81 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRG-FP--TIKVFGA 81 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCc-cC--EEEEECC
Confidence 67788889999999876664432 23578888887777778889999843 33 6666654
No 48
>PRK10638 glutaredoxin 3; Provisional
Probab=85.76 E-value=5.2 Score=27.14 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=45.1
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc-c-HhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-A-EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~-g-~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr 147 (154)
+.+||-=-.|++|.+..+++.++.- .+...++.... . +++.+..|.. .+ =.+++ +|.+..|.+.+..+..
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi--~y~~~dv~~~~~~~~~l~~~~g~~--~v--P~i~~--~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGV--SFQEIPIDGDAAKREEMIKRSGRT--TV--PQIFI--DAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCC--CcEEEECCCCHHHHHHHHHHhCCC--Cc--CEEEE--CCEEEeCHHHHHHHHH
Confidence 4567777999999999999998754 56667774332 2 2333333432 12 12344 4788899998877654
Q ss_pred H
Q 031708 148 V 148 (154)
Q Consensus 148 ~ 148 (154)
.
T Consensus 75 ~ 75 (83)
T PRK10638 75 R 75 (83)
T ss_pred c
Confidence 3
No 49
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=85.71 E-value=1.2 Score=32.19 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=25.4
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHc-CCC--cEEEEEc
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRAD-KYR--KIKFCCL 103 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~D-r~~--r~~F~~i 103 (154)
...++|||=.|+.|...-..+.+.- ..+ ++.|.++
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 4578999999999999988876632 223 5666555
No 50
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=85.60 E-value=4.4 Score=30.39 Aligned_cols=63 Identities=8% Similarity=0.219 Sum_probs=39.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcc----------------------cHhHHHhcCCChhhccce
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA----------------------AEPYLRLCGLDREDVLRR 125 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~----------------------g~~lL~~~Gl~~e~~~~S 125 (154)
.+.||...|+.|......+.+.- .+..+.++.+.... ..++.+.+|+.. . -+
T Consensus 65 ~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--~-P~ 141 (173)
T PRK03147 65 FLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP--L-PT 141 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC--c-Ce
Confidence 57799999999999876664433 23346666664221 124456666632 2 36
Q ss_pred EEEEECCceEE
Q 031708 126 FLFVEGPGLYH 136 (154)
Q Consensus 126 ivlid~~G~~y 136 (154)
+++++.+|++.
T Consensus 142 ~~lid~~g~i~ 152 (173)
T PRK03147 142 TFLIDKDGKVV 152 (173)
T ss_pred EEEECCCCcEE
Confidence 77888888865
No 51
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=85.58 E-value=1.3 Score=34.81 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=25.5
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL 103 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i 103 (154)
...++|+|=.|++|...-..+.....+=++++.++
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~ 113 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPV 113 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEEEc
Confidence 35789999999999999999876333334555533
No 52
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=85.28 E-value=3.3 Score=33.54 Aligned_cols=64 Identities=11% Similarity=0.037 Sum_probs=41.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-------------ccHhHHHhcCCChhhccceEEEEECCceE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-------------AAEPYLRLCGLDREDVLRRFLFVEGPGLY 135 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-------------~g~~lL~~~Gl~~e~~~~Sivlid~~G~~ 135 (154)
.++||=.+|+.|..++-.+.+.-.+..+.+..+.-+ ....+.+.||.-...+ =+.++||.+|.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~i-PttfLId~~G~i 149 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVAT-PTTFLVNVNTLE 149 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCC-CeEEEEeCCCcE
Confidence 888999999999999888877655444666555311 1223445666411122 367788888865
No 53
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=85.23 E-value=1.6 Score=28.65 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=24.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHH--cCCC--cEEEEEc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRA--DKYR--KIKFCCL 103 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~--Dr~~--r~~F~~i 103 (154)
.++|||=.|+.|...-..+.+. ...+ ++.+.++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 3689999999999999999886 2233 4555554
No 54
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=85.19 E-value=6.1 Score=28.61 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=41.0
Q ss_pred eEEEEc-CCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYD-GVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYD-G~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+|+|. -+|+.|.....++.+... .+.+.|.-+.-....++.+.||+..- =++++.++
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~v---Pt~~i~~~ 84 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERV---PTTIFLQD 84 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcC---CEEEEEeC
Confidence 566666 499999998888866542 35577776666667888999998543 36777654
No 55
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=85.18 E-value=3 Score=28.25 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=39.2
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcC----CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADK----YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr----~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
-.+.||..+|+.|.....-+.+... ..++.|..+..... ++...+++ .. . =++++...
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~-~~-~-Pt~~~~~~ 82 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV-DG-F-PTILFFPA 82 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC-CC-C-CEEEEEcC
Confidence 3577999999999998877755442 24688888876543 45566676 33 3 36766654
No 56
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=85.03 E-value=2 Score=30.33 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=43.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEe
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQA 138 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~g 138 (154)
...+|+...|+.|...++++.+.-.. +++.|.-+.-....++.+.||+.. + =+++ +++ ...+.|
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~--v-Pt~v-idG-~~~~~G 79 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMS--V-PAIF-LNG-ELFGFG 79 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCcc--C-CEEE-ECC-EEEEeC
Confidence 36899999999999999988776543 357776666555667788999863 2 3564 442 334444
No 57
>PRK09381 trxA thioredoxin; Provisional
Probab=84.82 E-value=6.9 Score=27.28 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=42.0
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
-.+.||-.+|+-|......+.+.- ..+++.|..+.-.....+..++++.. -+ +++++. +|+..
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~P--t~~~~~-~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRG-IP--TLLLFK-NGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCc-CC--EEEEEe-CCeEE
Confidence 367789999999999987775422 23557777776655666777888743 23 666665 35533
No 58
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=84.66 E-value=6.4 Score=27.56 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=23.0
Q ss_pred eEEEEcC-CCcchHHHHHHHHHHc---CCCcEEEEEcC
Q 031708 71 GVVIYDG-VCHLCHGGVKWVIRAD---KYRKIKFCCLQ 104 (154)
Q Consensus 71 ~vVfYDG-~C~LC~~~V~fl~r~D---r~~r~~F~~iQ 104 (154)
.+.||-+ .|+.|.....-+.+.- ++..+.++.+.
T Consensus 29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is 66 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGIS 66 (124)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEE
T ss_pred EEEEeCccCccccccchhHHHHHhhhhccceEEeeecc
Confidence 5778999 9999999887665532 23345555543
No 59
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=84.23 E-value=2.2 Score=29.92 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=41.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--------CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--------YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--------~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||-.+|+.|......+.+.-. .+++.|..+.......+.+++|+.. . =++++..+
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~--~-Ptl~~~~~ 87 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK--Y-PTLKLFRN 87 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc--C-CEEEEEeC
Confidence 577899999999998877754321 2468898887666678889999853 2 36666643
No 60
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=83.81 E-value=9.2 Score=25.75 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=45.1
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI 146 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il 146 (154)
.+.+||.=-.|++|.+..+++.+++- .+...++... .+.++.+..|.. .+ =.+++ +|++..|++.+...+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi--~y~~idi~~~~~~~~~~~~~g~~--~v--P~i~i--~g~~igG~~~l~~~l 78 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGY--DFEEIPLGNDARGRSLRAVTGAT--TV--PQVFI--GGKLIGGSDELEAYL 78 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCC--CcEEEECCCChHHHHHHHHHCCC--Cc--CeEEE--CCEEEcCHHHHHHHh
Confidence 45788888899999999999987643 5667777543 233333333431 12 12344 477889998877654
No 61
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=83.74 E-value=10 Score=25.17 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=41.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc--cHhHHHhcCCChhhccceE-EEEEC-CceEEEehHHHHHHH
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRF-LFVEG-PGLYHQASTGGGWGI 146 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Si-vlid~-~G~~y~gSdAvl~il 146 (154)
++|+....|++|.+...++..+.- .+....+.... ..+.+ ..+ +. ..+ +++++ +|....+|+|++.-+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi--~y~~~~v~~~~~~~~~~~-~~~--p~---~~vP~l~~~~~~~~l~es~~I~~yL 73 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL--DVILYPCPKGSPKRDKFL-EKG--GK---VQVPYLVDPNTGVQMFESADIVKYL 73 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC--cEEEEECCCChHHHHHHH-HhC--CC---CcccEEEeCCCCeEEEcHHHHHHHH
Confidence 456777899999998888877653 45666664221 22332 222 21 122 23443 577788999988765
Q ss_pred H
Q 031708 147 T 147 (154)
Q Consensus 147 r 147 (154)
.
T Consensus 74 ~ 74 (77)
T cd03041 74 F 74 (77)
T ss_pred H
Confidence 4
No 62
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=82.04 E-value=7.2 Score=22.12 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=25.2
Q ss_pred eEEEEcCCCcchHHHHHHHHHH---cCCCcEEEEEcCCc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRA---DKYRKIKFCCLQSQ 106 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~---Dr~~r~~F~~iQS~ 106 (154)
.++|+...|+.|......+.+. ..+=.+..++....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED 39 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC
Confidence 3689999999999999988864 33334455555443
No 63
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=82.02 E-value=11 Score=27.41 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=46.2
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
.+.||--+|+-|......+.+..+ ...+.|+-+.......+.+++++.. + =++++..+ |+..
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~--v-Pt~l~fk~-G~~v 88 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKV--L-PTVILFKN-GKTV 88 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCcc--C-CEEEEEEC-CEEE
Confidence 567899999999988888866443 3468899888888888888998853 2 37777765 5433
No 64
>PHA03050 glutaredoxin; Provisional
Probab=82.02 E-value=15 Score=26.97 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=46.3
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHcCCC-cEEEEEcCC----cccHhHH-HhcCCChhhccceEEEEECCceEEEehHHH
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRADKYR-KIKFCCLQS----QAAEPYL-RLCGLDREDVLRRFLFVEGPGLYHQASTGG 142 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~-r~~F~~iQS----~~g~~lL-~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv 142 (154)
.+.+||-=..||+|.+.-+++..+.-.+ .+....+.. ...+..+ +..|.. .+ =.+++ +|++..|.|-+
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~--tV--P~IfI--~g~~iGG~ddl 86 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGR--TV--PRIFF--GKTSIGGYSDL 86 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCC--Cc--CEEEE--CCEEEeChHHH
Confidence 4677888889999999999998876533 577888864 1112223 333432 22 13355 37788888887
Q ss_pred HHHH
Q 031708 143 GWGI 146 (154)
Q Consensus 143 l~il 146 (154)
..+-
T Consensus 87 ~~l~ 90 (108)
T PHA03050 87 LEID 90 (108)
T ss_pred HHHH
Confidence 7644
No 65
>PRK10824 glutaredoxin-4; Provisional
Probab=81.61 E-value=13 Score=27.92 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=41.4
Q ss_pred CeEEEEcC-----CCcchHHHHHHHHHHcCCCcEEEEEcCC-cccHhHHHhc-CCChhhccceEEEEECCceEEEehHHH
Q 031708 70 PGVVIYDG-----VCHLCHGGVKWVIRADKYRKIKFCCLQS-QAAEPYLRLC-GLDREDVLRRFLFVEGPGLYHQASTGG 142 (154)
Q Consensus 70 ~~vVfYDG-----~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~~g~~lL~~~-Gl~~e~~~~Sivlid~~G~~y~gSdAv 142 (154)
+.+||-=| .|++|.+..+.+..+.- .+....+.. +.-+..|..+ |.. .+ =-+|| +|+...|.|-+
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i--~~~~idi~~d~~~~~~l~~~sg~~--TV--PQIFI--~G~~IGG~ddl 87 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGE--RFAYVDILQNPDIRAELPKYANWP--TF--PQLWV--DGELVGGCDIV 87 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCC--CceEEEecCCHHHHHHHHHHhCCC--CC--CeEEE--CCEEEcChHHH
Confidence 44555555 79999999999988753 445556543 2222223332 221 12 12455 47888899888
Q ss_pred HHHHH
Q 031708 143 GWGIT 147 (154)
Q Consensus 143 l~ilr 147 (154)
..+.+
T Consensus 88 ~~l~~ 92 (115)
T PRK10824 88 IEMYQ 92 (115)
T ss_pred HHHHH
Confidence 77654
No 66
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=81.18 E-value=15 Score=25.25 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=45.5
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCC---CcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKY---RKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGI 146 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~---~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~il 146 (154)
+||.=-.|++|....+++.++... -.+...+++... .+++.+..|.....+ =.+++ +|+...|+|.+..+.
T Consensus 3 ~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tV--P~ifi--~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 3 VIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETV--PQIFV--DEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCc--CeEEE--CCEEecCHHHHHHHH
Confidence 455556899999999999887542 257777787432 223344445311122 13355 367788999988875
Q ss_pred HH
Q 031708 147 TV 148 (154)
Q Consensus 147 r~ 148 (154)
+.
T Consensus 79 ~~ 80 (86)
T TIGR02183 79 KE 80 (86)
T ss_pred Hh
Confidence 53
No 67
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=80.83 E-value=12 Score=26.96 Aligned_cols=81 Identities=11% Similarity=0.174 Sum_probs=48.0
Q ss_pred CCCCCCCC--eEEEEcCCCcchHHHHHHHHHH-----cCCCc--EEEEEcCCcc----------------------cHhH
Q 031708 63 MEPSLLQP--GVVIYDGVCHLCHGGVKWVIRA-----DKYRK--IKFCCLQSQA----------------------AEPY 111 (154)
Q Consensus 63 ~~p~~~~~--~vVfYDG~C~LC~~~V~fl~r~-----Dr~~r--~~F~~iQS~~----------------------g~~l 111 (154)
.+.....+ .+.||-..|+-|......+.+. +.... +.++++.... ...+
T Consensus 12 ~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T cd03009 12 PVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRL 91 (131)
T ss_pred cHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHH
Confidence 33333444 4557799999999988776542 11123 4555554321 1345
Q ss_pred HHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708 112 LRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 112 L~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr 147 (154)
.+.||+.. + =++++++.+|++. ..+|.-.++.
T Consensus 92 ~~~~~v~~--~-P~~~lid~~G~i~-~~~~~~~~~~ 123 (131)
T cd03009 92 NRTFKIEG--I-PTLIILDADGEVV-TTDARELVLE 123 (131)
T ss_pred HHHcCCCC--C-CEEEEECCCCCEE-cccHHHHHhh
Confidence 56677632 3 4788999889854 5567665554
No 68
>PTZ00102 disulphide isomerase; Provisional
Probab=80.59 E-value=12 Score=32.83 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=50.6
Q ss_pred CeEEEEcCCCcchHHHHHHHHHH-----cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce-EEEe---hH
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRA-----DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL-YHQA---ST 140 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~-----Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~-~y~g---Sd 140 (154)
-.+.||..+|+.|......+.+. +...++.|+.+.-.....+.+++|+.. . -+++++.+++. .|.| .+
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~~g~~~~y~g~~~~~ 128 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRG--Y-PTIKFFNKGNPVNYSGGRTAD 128 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCc--c-cEEEEEECCceEEecCCCCHH
Confidence 46889999999999877654432 234579999887767778888999853 3 36777765432 2333 44
Q ss_pred HHHHHHHHc
Q 031708 141 GGGWGITVN 149 (154)
Q Consensus 141 Avl~ilr~l 149 (154)
.+...+..+
T Consensus 129 ~l~~~l~~~ 137 (477)
T PTZ00102 129 GIVSWIKKL 137 (477)
T ss_pred HHHHHHHHh
Confidence 455544444
No 69
>PRK10996 thioredoxin 2; Provisional
Probab=80.12 E-value=14 Score=27.69 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=44.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
.+.||-.+|+.|......+.+.- ..+++.|+.+.-....++.+++|+.. -. ++++.+ +|+..
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~-~P--tlii~~-~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS-IP--TIMIFK-NGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc-cC--EEEEEE-CCEEE
Confidence 67899999999999877665432 34578888887776778888999843 23 666665 46644
No 70
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=79.69 E-value=6.3 Score=24.65 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=31.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc--ccHhHHHhcCCC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ--AAEPYLRLCGLD 118 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~--~g~~lL~~~Gl~ 118 (154)
.++|+--.|+.|.....++..++ =.+..+++... ..+++++.+|..
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~--i~~~~vdi~~~~~~~~~~~~~~~~~ 49 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKG--IAFEEIDVEKDSAAREEVLKVLGQR 49 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCC--CeEEEEeccCCHHHHHHHHHHhCCC
Confidence 57888899999999988886643 35777777543 223455666653
No 71
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=79.24 E-value=17 Score=24.60 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=46.5
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHH
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGW 144 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ 144 (154)
+.+||.=-.|++|.+..+++.+.-. .=.+.+.++.... .+++.+..|.....+ = .+++ +|+...|.+-+..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~v-P-~ifi--~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETV-P-QIFV--DQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcC-C-EEEE--CCEEEcCHHHHHH
Confidence 4567777889999999999988532 2357777776531 233434444321222 1 2355 4677888888777
Q ss_pred HHH
Q 031708 145 GIT 147 (154)
Q Consensus 145 ilr 147 (154)
..+
T Consensus 78 ~~~ 80 (85)
T PRK11200 78 YVK 80 (85)
T ss_pred HHH
Confidence 655
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=78.60 E-value=12 Score=29.89 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=45.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEeh
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQAS 139 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gS 139 (154)
.++|+-.+|+.|.....++.+... .+.+.|.-+.-....++.+.||+.. + =++++. .+|..+.|.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~--v-Ptl~i~-~~~~~~~G~ 202 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMS--V-PKIVIN-KGVEEFVGA 202 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCcc--C-CEEEEe-cCCEEEECC
Confidence 456889999999998888877653 3568777676666778888898853 2 366654 446545564
No 73
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=78.57 E-value=5.8 Score=28.63 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=23.6
Q ss_pred eEEEEcCCCcc-hHHHHHHHHHHc----CC--CcEEEEEcC
Q 031708 71 GVVIYDGVCHL-CHGGVKWVIRAD----KY--RKIKFCCLQ 104 (154)
Q Consensus 71 ~vVfYDG~C~L-C~~~V~fl~r~D----r~--~r~~F~~iQ 104 (154)
.++|+-.+|+. |...+.-+.+.- .+ +++.++.+.
T Consensus 26 vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs 66 (142)
T cd02968 26 LVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFIS 66 (142)
T ss_pred EEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEE
Confidence 56678999996 999888776532 12 247776664
No 74
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=77.53 E-value=17 Score=25.89 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=43.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEeh
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQAS 139 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gS 139 (154)
.+.||..+|+-|......+.+... ...+.|+.+..... .+.+++++.. + =++++..+ |+...+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~--~-Pt~~~f~~-G~~v~~~ 92 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKV--L-PTLLVYKN-GELIDNI 92 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCc--C-CEEEEEEC-CEEEEEE
Confidence 466999999999988877765442 34578888877655 6777888842 2 36777664 5544433
No 75
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=77.43 E-value=13 Score=25.04 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=39.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHc----C-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRAD----K-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~D----r-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
-.+.||-.+|+-|.....-+.+.. . ...+.|..+.-.....+.+.+++.. + =+++++..
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~--~-Pt~~~~~~ 82 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRG--Y-PTLLLFKD 82 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCc--C-CEEEEEeC
Confidence 467899999999998876554331 1 2367787776655556778888742 3 36766654
No 76
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=76.17 E-value=18 Score=23.81 Aligned_cols=68 Identities=7% Similarity=0.041 Sum_probs=43.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc--ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ--AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~--~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr 147 (154)
+||-=-.|+.|....+++.++.- .+...++... ..+++.+..|. ..+ =.+++ +|++..|.+.+..+.+
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~~i--~~~~~di~~~~~~~~~~~~~~g~--~~v--P~i~i--~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSKGV--TFTEIRVDGDPALRDEMMQRSGR--RTV--PQIFI--GDVHVGGCDDLYALDR 71 (79)
T ss_pred EEEecCCChhHHHHHHHHHHcCC--CcEEEEecCCHHHHHHHHHHhCC--CCc--CEEEE--CCEEEcChHHHHHHHH
Confidence 45556789999999999987753 5677777543 23333333331 112 23455 3678899998887765
No 77
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=75.83 E-value=18 Score=23.24 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=38.1
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWGI 146 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~il 146 (154)
.+++.-.|++|.+....+....- .+..+.+........++.. .. ..+ ++++++|....+|.|++.-+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl--~~~~~~~~~~~~~~~~~~~--~~----~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI--PVEQIILQNDDEATPIRMI--GA----KQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC--CeEEEECCCCchHHHHHhc--CC----CccCEEEeCCCeEeehHHHHHHHH
Confidence 46777889999987666655543 4555555432222222221 11 122 33445577889999887643
No 78
>PHA02125 thioredoxin-like protein
Probab=75.29 E-value=8.9 Score=25.57 Aligned_cols=44 Identities=5% Similarity=0.018 Sum_probs=36.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLD 118 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~ 118 (154)
.++||=.+|+-|.....++.+. .+.|+.+......++.+++++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~----~~~~~~vd~~~~~~l~~~~~v~ 45 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV----EYTYVDVDTDEGVELTAKHHIR 45 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH----hheEEeeeCCCCHHHHHHcCCc
Confidence 5789999999999988888654 3678888877788888898875
No 79
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=75.06 E-value=3.1 Score=30.62 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=18.3
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHH
Q 031708 68 LQPGVVIYDGVCHLCHGGVKWVIR 91 (154)
Q Consensus 68 ~~~~vVfYDG~C~LC~~~V~fl~r 91 (154)
....++|||=.|+.|......+.+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHHhh
Confidence 345789999999999998776643
No 80
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=74.01 E-value=23 Score=25.43 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=39.0
Q ss_pred CCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHHHcCCC
Q 031708 77 GVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITVNGKP 152 (154)
Q Consensus 77 G~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr~lg~p 152 (154)
|.|++|++..-.+.... =.+....+.-....+-+...+-. ..+ = +++++ |.+...|+++..-+...-.|
T Consensus 20 g~cpf~~rvrl~L~eKg--i~ye~~~vd~~~~p~~~~~~nP~-g~v-P--vL~~~-~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKG--VVFNVTTVDMKRKPEDLKDLAPG-TQP-P--FLLYN-GEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCC--CceEEEEeCCCCCCHHHHHhCCC-CCC-C--EEEEC-CEEecCHHHHHHHHHHHccC
Confidence 89999999777665553 34555555322211223232211 122 1 34454 77888999998877655433
No 81
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=73.55 E-value=11 Score=31.37 Aligned_cols=59 Identities=10% Similarity=0.100 Sum_probs=44.0
Q ss_pred CCCCCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC--cccHhHHHhcCCChhhccc
Q 031708 66 SLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS--QAAEPYLRLCGLDREDVLR 124 (154)
Q Consensus 66 ~~~~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS--~~g~~lL~~~Gl~~e~~~~ 124 (154)
....+..+|.+-+|+-|...+..++.-++.=.|.|+.-+. ..-+.-...++|+++.+..
T Consensus 107 ~~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~ 167 (200)
T TIGR03759 107 QGGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRS 167 (200)
T ss_pred CCCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeec
Confidence 3446788999999999999999998877766889998333 2223334678999998743
No 82
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=73.54 E-value=2.4 Score=32.21 Aligned_cols=34 Identities=12% Similarity=0.161 Sum_probs=27.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQ 104 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQ 104 (154)
.++|||=.||+|-.....+.+... +-+|.+.|+.
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 579999999999999988877542 3477787775
No 83
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=73.54 E-value=23 Score=23.22 Aligned_cols=65 Identities=15% Similarity=0.003 Sum_probs=40.3
Q ss_pred CCcchHHHHHHHHHHcCCCcEEEEEcCCc---ccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708 78 VCHLCHGGVKWVIRADKYRKIKFCCLQSQ---AAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 78 ~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~---~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr 147 (154)
-|++|++..-.+..+.-...+.++..... .+..+.+.-+. .. + =++++.+|++...|.|++..+.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~-V---P~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GK-V---PVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--S-S---SEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eE-E---EEEEECCCCEeeCHHHHHHHHh
Confidence 39999998888888877778888855211 12333332221 11 1 1345567889999999887664
No 84
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=72.99 E-value=6.6 Score=29.37 Aligned_cols=37 Identities=11% Similarity=-0.049 Sum_probs=25.9
Q ss_pred CCCCeEEEEcCCCcchHHHHHHHHHHcC--CC--cEEEEEc
Q 031708 67 LLQPGVVIYDGVCHLCHGGVKWVIRADK--YR--KIKFCCL 103 (154)
Q Consensus 67 ~~~~~vVfYDG~C~LC~~~V~fl~r~Dr--~~--r~~F~~i 103 (154)
.....++|||=.|+.|...-..+.+.-. .+ +|++.++
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 3346899999999999999888855422 23 4454554
No 85
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=72.58 E-value=21 Score=28.56 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=43.1
Q ss_pred eEEEEc---CCCcchHHHHHHHHHHcC-CC--cEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYD---GVCHLCHGGVKWVIRADK-YR--KIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYD---G~C~LC~~~V~fl~r~Dr-~~--r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.++|+. .+|+-|......+.+... .+ .+.++.+..+...++.+.||+.. + =+++++++
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~--~-Pt~~~f~~ 86 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVER--V-PTTIILEE 86 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCc--c-CEEEEEeC
Confidence 456667 689999999998877632 22 46799998877888999999854 2 37777754
No 86
>PTZ00062 glutaredoxin; Provisional
Probab=72.13 E-value=27 Score=28.62 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=43.0
Q ss_pred CeEEEEcC-----CCcchHHHHHHHHHHcCCCcEEEEEcC-CcccHhHHHhc-CCChhhccceEEEEECCceEEEehHHH
Q 031708 70 PGVVIYDG-----VCHLCHGGVKWVIRADKYRKIKFCCLQ-SQAAEPYLRLC-GLDREDVLRRFLFVEGPGLYHQASTGG 142 (154)
Q Consensus 70 ~~vVfYDG-----~C~LC~~~V~fl~r~Dr~~r~~F~~iQ-S~~g~~lL~~~-Gl~~e~~~~Sivlid~~G~~y~gSdAv 142 (154)
+.+||-=| .|++|++.++++..+. -.+...++. ++..++.|..+ |... + =.++| +|++..|.|-+
T Consensus 114 ~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~--i~y~~~DI~~d~~~~~~l~~~sg~~T--v--PqVfI--~G~~IGG~d~l 185 (204)
T PTZ00062 114 KILLFMKGSKTFPFCRFSNAVVNMLNSSG--VKYETYNIFEDPDLREELKVYSNWPT--Y--PQLYV--NGELIGGHDII 185 (204)
T ss_pred CEEEEEccCCCCCCChhHHHHHHHHHHcC--CCEEEEEcCCCHHHHHHHHHHhCCCC--C--CeEEE--CCEEEcChHHH
Confidence 45555555 7999999999998764 356666774 33333434332 3211 1 12455 47888888887
Q ss_pred HHHHH
Q 031708 143 GWGIT 147 (154)
Q Consensus 143 l~ilr 147 (154)
..+.+
T Consensus 186 ~~l~~ 190 (204)
T PTZ00062 186 KELYE 190 (204)
T ss_pred HHHHH
Confidence 77654
No 87
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=71.45 E-value=14 Score=25.54 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=39.5
Q ss_pred eEEEEcCCCcchHHHHHHH------HHHcCCCcEEEEEcCCcc----cHhHHHhcCCChhhccceEEEEEC-CceE
Q 031708 71 GVVIYDGVCHLCHGGVKWV------IRADKYRKIKFCCLQSQA----AEPYLRLCGLDREDVLRRFLFVEG-PGLY 135 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl------~r~Dr~~r~~F~~iQS~~----g~~lL~~~Gl~~e~~~~Sivlid~-~G~~ 135 (154)
.+.||=.+|+.|......+ .+.-. +++.|+.+.-.. ..++.+++|+.. + =++++++. +|..
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~vd~~~~~~~~~~~~~~~~i~~--~-Pti~~~~~~~g~~ 86 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALK-KDVVLLRADWTKNDPEITALLKRFGVFG--P-PTYLFYGPGGEPE 86 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHh-CCeEEEEEecCCCCHHHHHHHHHcCCCC--C-CEEEEECCCCCCC
Confidence 4667778899999987544 22222 268777665332 467788888853 3 37778875 5553
No 88
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=71.41 E-value=27 Score=24.35 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=39.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc--CC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD--KY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D--r~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~ 134 (154)
.+.||=.+|+-|......+.+.. .. ..+.|.-+..+ ..++.++|++..- . +++++.+ |+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~-P--t~~~~~~-g~ 82 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCE-P--TFLFYKN-GE 82 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcC-c--EEEEEEC-CE
Confidence 56799999999999887775532 12 34666666555 4567788887542 3 6666654 54
No 89
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=70.30 E-value=21 Score=25.45 Aligned_cols=62 Identities=10% Similarity=-0.008 Sum_probs=40.2
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
.+.||=.+|+-|.....-+.+.. +..++.|..+.-.....+..++|+.. -+ +++++.+ |+..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~-~P--t~~i~~~-g~~~ 92 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHS-VP--AIVGIIN-GQVT 92 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCcc-CC--EEEEEEC-CEEE
Confidence 56799999999987765543322 22357777777655667778888843 23 6666653 4444
No 90
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=69.67 E-value=21 Score=21.35 Aligned_cols=65 Identities=14% Similarity=-0.025 Sum_probs=35.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHh--HHHhcCCChhhccceEEEEECCceEEEehHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEP--YLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGW 144 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~--lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ 144 (154)
++++-..|+.|.+...++..++- .+....+....... +.+..+ ...+ =+ ++++ |....++.|+.+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i--~~~~~~~~~~~~~~~~~~~~~~--~~~~--P~-l~~~-~~~~~es~~I~~ 68 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL--PYELVPVDLGEGEQEEFLALNP--LGKV--PV-LEDG-GLVLTESLAILE 68 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC--CcEEEEeCCCCCCCHHHHhcCC--CCCC--CE-EEEC-CEEEEcHHHHHH
Confidence 56777779999988777766654 34444443322211 222211 1122 12 2233 667888888765
No 91
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=68.73 E-value=34 Score=25.64 Aligned_cols=60 Identities=5% Similarity=-0.027 Sum_probs=44.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~ 134 (154)
.+-||-.+|+-|....-.+.+... .+.+.|.-+.-....++.++||+.. + =+++++.+ |+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~--i-PTf~~fk~-G~ 79 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYD--P-PTVMFFFR-NK 79 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCC--C-CEEEEEEC-CE
Confidence 344899999999998888866543 3567788887777888889999864 3 37777764 44
No 92
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=66.95 E-value=30 Score=24.66 Aligned_cols=72 Identities=13% Similarity=0.059 Sum_probs=44.2
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcC-CcccHhHHHhcCC--ChhhccceEEEEECCceEEEehHHHHHH
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ-SQAAEPYLRLCGL--DREDVLRRFLFVEGPGLYHQASTGGGWG 145 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQ-S~~g~~lL~~~Gl--~~e~~~~Sivlid~~G~~y~gSdAvl~i 145 (154)
.+.+||==-.|++|.+.-+++.++. -.+....+. .+.+.++.+.++- ....+ =.++++ |+...|.|-+..+
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tv--P~Vfi~--g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLG--VNPAVHEIDKEPAGKDIENALSRLGCSPAV--PAVFVG--GKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--CCCEEEEcCCCccHHHHHHHHHHhcCCCCc--CeEEEC--CEEEcCHHHHHHH
Confidence 4567777789999999999997764 346777775 4444443222211 01122 134554 6778888877765
Q ss_pred H
Q 031708 146 I 146 (154)
Q Consensus 146 l 146 (154)
.
T Consensus 82 ~ 82 (99)
T TIGR02189 82 H 82 (99)
T ss_pred H
Confidence 4
No 93
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=66.66 E-value=7.4 Score=28.08 Aligned_cols=38 Identities=16% Similarity=0.299 Sum_probs=25.9
Q ss_pred EEEE-cCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcccH
Q 031708 72 VVIY-DGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQAAE 109 (154)
Q Consensus 72 vVfY-DG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~g~ 109 (154)
++|| --.|+.|..++.-+.+.-. +..+.++.+......
T Consensus 28 l~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~ 69 (149)
T cd02970 28 VVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPE 69 (149)
T ss_pred EEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHH
Confidence 4444 6799999999988876532 245777777654433
No 94
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.25 E-value=10 Score=27.39 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=31.6
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA 107 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~ 107 (154)
.++++||--.||=|.-++.++.|..- .+.|+.|.+..
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v--~yd~VeIt~Sm 38 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNV--DYDFVEITESM 38 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCC--Cceeeehhhhh
Confidence 45689999999999999999988764 78999997754
No 95
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=66.12 E-value=16 Score=25.77 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=40.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCc-ccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||=.+|+-|......+.+.-. .+.+.|+.+... ....+.+++++.. + =+++++++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~--~-PT~~lf~~ 81 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVG--F-PTILLFNS 81 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCee--c-CEEEEEcC
Confidence 567899999999998877755432 234777777655 4567788888842 3 37777765
No 96
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=65.88 E-value=35 Score=22.37 Aligned_cols=69 Identities=7% Similarity=-0.115 Sum_probs=41.5
Q ss_pred EEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHHH
Q 031708 73 VIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITV 148 (154)
Q Consensus 73 VfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr~ 148 (154)
++.-..|++|.+.--++..+.- .+.+..+........+...+- ...+ = + +.+ +|....+|.+++.-+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i--~~~~~~v~~~~~~~~~~~~~p-~~~v-P-v-L~~-~g~~l~dS~~I~~yL~~ 69 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI--PYELVPVDPEEKRPEFLKLNP-KGKV-P-V-LVD-DGEVLTDSAAIIEYLEE 69 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE--EEEEEEEBTTSTSHHHHHHST-TSBS-S-E-EEE-TTEEEESHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC--eEEEeccCcccchhHHHhhcc-cccc-e-E-EEE-CCEEEeCHHHHHHHHHH
Confidence 4566789999997777766544 567777655443333333331 2222 1 2 234 48889999998875543
No 97
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=65.67 E-value=16 Score=28.56 Aligned_cols=32 Identities=9% Similarity=0.285 Sum_probs=23.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL 103 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i 103 (154)
.+.|+..+|+-|..++-.+.+...++ +.++.+
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l~~~~-~~vi~v 103 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQLSAQG-IRVVGM 103 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHcC-CEEEEE
Confidence 56689999999999999887775433 444444
No 98
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=65.36 E-value=47 Score=27.54 Aligned_cols=63 Identities=14% Similarity=0.103 Sum_probs=45.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHHH--cCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRA--DKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~--Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
-.+.||=.+|+-|.....-+.+. .-.+.+.|..+.......+.+++++.. . =+++++++ |+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~--~-PTl~~f~~-G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKG--Y-PTLLLFDK-GKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCc--C-CEEEEEEC-CEEE
Confidence 36889999999999887766443 234678888887777778888999853 2 36777764 5544
No 99
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=65.12 E-value=36 Score=26.47 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=44.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCCcccHhHHHhcCCCh----hhccceEEEEECCceE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQSQAAEPYLRLCGLDR----EDVLRRFLFVEGPGLY 135 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS~~g~~lL~~~Gl~~----e~~~~Sivlid~~G~~ 135 (154)
.+.||=.+|+-|......+.+... ..++.|..+.-....++.+++++.. ..+ =++++..+ |+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~-PT~ilf~~-Gk~ 120 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQL-PTIILFQG-GKE 120 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCC-CEEEEEEC-CEE
Confidence 567888999999999887766543 2358898888777778888999854 122 26666654 443
No 100
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=65.05 E-value=17 Score=25.18 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=38.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc-----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD-----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D-----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||-.+|+.|......+.+.- ....+.+..+.-.....+.+.+++.. + =+++++++
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~--~-Pt~~l~~~ 81 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRG--Y-PTIKLLKG 81 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCcc--c-cEEEEEcC
Confidence 57788999999998876664422 12357777665555567778888853 2 36667754
No 101
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=64.92 E-value=36 Score=22.13 Aligned_cols=71 Identities=13% Similarity=0.064 Sum_probs=41.7
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEE--CCceEEEehHHHHHHHH
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVE--GPGLYHQASTGGGWGIT 147 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid--~~G~~y~gSdAvl~ilr 147 (154)
+++|++--.|++|.....++....- .+.+..+......+ ++.-+. ..+ =. ++.+ ++|.+..+|.|++.-+.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi--~y~~~~~~~~~~~~-~~~~~~--~~v-P~-l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGI--PYEVVEVNPVSRKE-IKWSSY--KKV-PI-LRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC--ceEEEECCchhHHH-HHHhCC--Ccc-CE-EEECCCCCccEEEcHHHHHHHHH
Confidence 3567888899999999988877754 35555554322222 222111 112 12 2323 14778889999887443
No 102
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=64.71 E-value=56 Score=24.38 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=48.1
Q ss_pred CCCeEEEEcCC---CcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 68 LQPGVVIYDGV---CHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 68 ~~~~vVfYDG~---C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
....+|+|=.. |+=|....-.+..... .+++.|+-+.-....++..+||+.- + =++++..+ |+..
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~s--I-PTli~fkd-Gk~v 96 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLR--T-PALLFFRD-GRYV 96 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCc--C-CEEEEEEC-CEEE
Confidence 35677888777 9999999888866554 4678888887777888999999843 3 37777764 5544
No 103
>PTZ00056 glutathione peroxidase; Provisional
Probab=64.63 E-value=27 Score=27.94 Aligned_cols=48 Identities=8% Similarity=0.073 Sum_probs=31.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC---CCcEEEEEcCC-----------cccHhHHHhcCCC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK---YRKIKFCCLQS-----------QAAEPYLRLCGLD 118 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS-----------~~g~~lL~~~Gl~ 118 (154)
.+.|.=.+|+.|..++..+.++-+ ...+.++.+.. +..++.++.+|++
T Consensus 43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~ 104 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK 104 (199)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC
Confidence 455778999999998877766532 23477777742 2345556666653
No 104
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=64.05 E-value=17 Score=26.21 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=38.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc-----CCCcEEEEEcC--CcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD-----KYRKIKFCCLQ--SQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D-----r~~r~~F~~iQ--S~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||-.+|+.|.....-+.+.. ..+.+.|..+. ......+.+.+++.. . =+++++..
T Consensus 23 vV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~--~-Pt~~lf~~ 87 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG--Y-PTLRYFPP 87 (114)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC--C-CEEEEECC
Confidence 56789999999998877664432 23568888775 333456778888842 2 36666643
No 105
>smart00594 UAS UAS domain.
Probab=63.16 E-value=26 Score=25.57 Aligned_cols=60 Identities=8% Similarity=-0.010 Sum_probs=42.1
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-----CCcEEE--EEcCCcccHhHHHhcCCChhhccceEEEEECCc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-----YRKIKF--CCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG 133 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-----~~r~~F--~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G 133 (154)
.+.|+..+|..|....+-+...+. +.++.+ +++.++.|.++...+++.. + =++++++.+|
T Consensus 31 lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~--~-P~~~~l~~~~ 97 (122)
T smart00594 31 WLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDS--F-PYVAIVDPRT 97 (122)
T ss_pred EEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCC--C-CEEEEEecCC
Confidence 456677789999998886544221 235665 6677888999999998753 3 3788887665
No 106
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=61.84 E-value=38 Score=21.46 Aligned_cols=67 Identities=7% Similarity=-0.146 Sum_probs=37.6
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ilr 147 (154)
+|++-..|+.|.+....+....-. +....+... ...+++ ..+ +. ..+ +++++ |.....|.|++.-+.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~~~~-~~~--p~---~~vP~l~~~-~~~l~es~aI~~yL~ 70 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVS--VEIIDVDPDNPPEDLA-ELN--PY---GTVPTLVDR-DLVLYESRIIMEYLD 70 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCc--cEEEEcCCCCCCHHHH-hhC--CC---CCCCEEEEC-CEEEEcHHHHHHHHH
Confidence 577788999999987777665543 444333321 122333 222 11 122 23444 567788988876543
No 107
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=59.85 E-value=30 Score=23.54 Aligned_cols=61 Identities=8% Similarity=-0.066 Sum_probs=41.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~ 134 (154)
-.+.||=.+|+.|.....-+.+.. ...++.|..+.-.....+..++++.. -. +++++ .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~-~P--t~~~~-~~g~ 82 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTA-LP--TIYHA-KDGV 82 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcc-cC--EEEEe-CCCC
Confidence 378899999999999887665543 22368888876666667778888743 22 56555 3454
No 108
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=59.81 E-value=20 Score=25.96 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=32.6
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC-ccc----HhHHHhcCCChhh
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS-QAA----EPYLRLCGLDRED 121 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS-~~g----~~lL~~~Gl~~e~ 121 (154)
+|+.=-.|+.|....+|+..++- .+.+.++.. +.. ..++...|.+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi~~~~~~~~el~~~~~~~~~~~~~ 54 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEHGV--DYTAIDIVEEPPSKEELKKWLEKSGLPLKK 54 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHcCC--ceEEecccCCcccHHHHHHHHHHcCCCHHH
Confidence 57788899999999999998864 577777632 222 3444555554443
No 109
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=59.36 E-value=24 Score=25.37 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=29.9
Q ss_pred CCCCCCCCCC--eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCC
Q 031708 61 PAMEPSLLQP--GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS 105 (154)
Q Consensus 61 ~~~~p~~~~~--~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS 105 (154)
++.+.....+ .+.||-..|+.|.+.+..+.+.- ++..+.++.+.+
T Consensus 15 ~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 15 PLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred ccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 3344444334 56689999999999987775543 234588887754
No 110
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=59.27 E-value=9.6 Score=27.81 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=18.9
Q ss_pred eEEEEcC-CCcchHHHHHHHHHHc
Q 031708 71 GVVIYDG-VCHLCHGGVKWVIRAD 93 (154)
Q Consensus 71 ~vVfYDG-~C~LC~~~V~fl~r~D 93 (154)
.+.||=+ +|+.|..++-++.+..
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~ 55 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQ 55 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHH
T ss_pred EEEEEccCCCCcchhhhhhHHhhh
Confidence 5678889 9999999998776653
No 111
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=58.97 E-value=29 Score=25.90 Aligned_cols=33 Identities=12% Similarity=-0.027 Sum_probs=24.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQ 104 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQ 104 (154)
.+.|+..+|+ |..++.-+.++- ++..+.++.+.
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3558899999 999988776643 22358888774
No 112
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=58.14 E-value=44 Score=20.96 Aligned_cols=67 Identities=6% Similarity=-0.105 Sum_probs=35.1
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcC-Ccc-cHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ-SQA-AEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGW 144 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQ-S~~-g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ 144 (154)
+|+.-..|+.|.+..-++..++-.-...-+++. +.. ..+.. ..+ +. ..+ .++.++|.....|.|++.
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~-~~~--p~---~~vP~l~~~~~~~l~es~aI~~ 71 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFL-AKN--PA---GTVPVLELDDGTVITESVAICR 71 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHH-hhC--CC---CCCCEEEeCCCCEEecHHHHHH
Confidence 456666799999988777666543223333321 111 12222 222 21 122 223345777889988865
No 113
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=57.81 E-value=71 Score=25.09 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=42.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
.+-||--+|+-|...-..+..... ...++|+-+..... .+...+++.. + =+++++.+ |...
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~--v-PTlllyk~-G~~v 148 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDA--L-PALLVYKG-GELI 148 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCC--C-CEEEEEEC-CEEE
Confidence 345899999999988777755443 35799999988654 5667777742 3 47777764 5544
No 114
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=57.15 E-value=84 Score=23.90 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=15.7
Q ss_pred eEEEE--cCCCcchHHHHHHHHHH
Q 031708 71 GVVIY--DGVCHLCHGGVKWVIRA 92 (154)
Q Consensus 71 ~vVfY--DG~C~LC~~~V~fl~r~ 92 (154)
.+|+| =+.|+.|...+.-+.++
T Consensus 32 vvl~F~~~~~c~~C~~~l~~l~~~ 55 (173)
T cd03015 32 VVLFFYPLDFTFVCPTEIIAFSDR 55 (173)
T ss_pred EEEEEECCCCCCcCHHHHHHHHHH
Confidence 34444 57899999988877653
No 115
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=56.46 E-value=75 Score=23.59 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=46.0
Q ss_pred EEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEE-CCceEE
Q 031708 72 VVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVE-GPGLYH 136 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid-~~G~~y 136 (154)
++|++.+..-...+...+.... .++++.|+-+.......++..+|++..++ =++++++ .+++++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~-P~~vi~~~~~~~~~ 166 (184)
T PF13848_consen 100 ILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDL-PALVIFDSNKGKYY 166 (184)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSS-SEEEEEETTTSEEE
T ss_pred EEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccC-CEEEEEECCCCcEE
Confidence 4444567777788887775543 45778888887777778899999998776 5888887 345543
No 116
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=56.24 E-value=11 Score=28.55 Aligned_cols=33 Identities=3% Similarity=-0.101 Sum_probs=25.8
Q ss_pred EEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcC
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQ 104 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQ 104 (154)
.++||=.||+|--....+.+.-. .-.|.|.|+.
T Consensus 2 ~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 2 DFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred eEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 58999999999999998877543 2457777763
No 117
>PRK10329 glutaredoxin-like protein; Provisional
Probab=55.79 E-value=36 Score=23.40 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=25.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS 105 (154)
+.+||---.|++|.+.-++|.++. =.|..+++..
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~g--I~~~~idi~~ 35 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRG--FDFEMINVDR 35 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCC--CceEEEECCC
Confidence 456777789999999988886653 2677788864
No 118
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=55.52 E-value=35 Score=23.21 Aligned_cols=45 Identities=11% Similarity=0.190 Sum_probs=32.1
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCC--cEEEEEcCCcccHhHHHhcCCC
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYR--KIKFCCLQSQAAEPYLRLCGLD 118 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~--r~~F~~iQS~~g~~lL~~~Gl~ 118 (154)
++|==-.|+||......+.+.-... .+..++|.+ ..++.++||..
T Consensus 3 ~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~--d~~l~~~Y~~~ 49 (81)
T PF05768_consen 3 TLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE--DPELFEKYGYR 49 (81)
T ss_dssp EEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT--THHHHHHSCTS
T ss_pred EEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC--CHHHHHHhcCC
Confidence 3344457999999999998754333 578888875 45688999963
No 119
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=52.39 E-value=78 Score=22.06 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=39.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCccc---HhHHHhcCCChhhccceEEEEECCce
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAA---EPYLRLCGLDREDVLRRFLFVEGPGL 134 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g---~~lL~~~Gl~~e~~~~Sivlid~~G~ 134 (154)
.+-||=.+|+-|......+.+.-. ...+.|+.+..... .++.+.+++.. + =++++.. +|+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~--~-Pt~~~~~-~G~ 82 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIE--V-PHFLFYK-DGE 82 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCc--C-CEEEEEe-CCe
Confidence 345677889999998887765422 25677777755433 36778888753 2 3666664 454
No 120
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=50.94 E-value=81 Score=22.07 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=36.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCCcc-cHhHHH-hcCCChhhccceEEEEECC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQSQA-AEPYLR-LCGLDREDVLRRFLFVEGP 132 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS~~-g~~lL~-~~Gl~~e~~~~Sivlid~~ 132 (154)
.+.||=.+|+.|.....-+.+.. +...+.|..+.... ...+.. .+++.. . =++++++.+
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~--~-Pti~~f~~~ 88 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKS--F-PTILFFPKN 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCc--C-CEEEEEcCC
Confidence 57788889999998877664432 22358887776654 334443 467632 3 367777543
No 121
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=50.73 E-value=85 Score=22.16 Aligned_cols=63 Identities=10% Similarity=0.050 Sum_probs=40.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-----CCcEEEE--EcCCcccHhHHHhcCCChhhccceEEEEEC-CceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-----YRKIKFC--CLQSQAAEPYLRLCGLDREDVLRRFLFVEG-PGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-----~~r~~F~--~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~-~G~~y 136 (154)
.+.|+.-+|..|....+-+...+. +.++.+. ++.++.+.++...+++.. + =+++++++ +|...
T Consensus 21 lv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~--~-P~~~~i~~~~g~~l 91 (114)
T cd02958 21 LVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDK--Y-PHIAIIDPRTGEVL 91 (114)
T ss_pred EEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccC--C-CeEEEEeCccCcEe
Confidence 466889999999987764433211 1234333 445567888888888642 3 47888987 67544
No 122
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=50.40 E-value=72 Score=27.39 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=42.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc-----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD-----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D-----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||--+|+.|.....-+.+.. ....+.|+.+......++.+++|+.. . =++++..+
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~-Pt~~~~~~ 84 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSG--Y-PTLKIFRN 84 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCcc--c-cEEEEEeC
Confidence 57799999999998775554321 23469999998877888889999853 2 36777764
No 123
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=49.33 E-value=31 Score=23.02 Aligned_cols=56 Identities=13% Similarity=0.211 Sum_probs=34.1
Q ss_pred EcCCCcchHHHHHHHHHHcCC--CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEe
Q 031708 75 YDGVCHLCHGGVKWVIRADKY--RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQA 138 (154)
Q Consensus 75 YDG~C~LC~~~V~fl~r~Dr~--~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~g 138 (154)
|--.|+.|...++.+...-.+ -.+....+ ...+++ ..||+..- . ++ ++++ ...+.|
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~-~~ygv~~v-P--al-vIng-~~~~~G 63 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEI-EKYGVMSV-P--AL-VING-KVVFVG 63 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHH-HHTT-SSS-S--EE-EETT-EEEEES
T ss_pred eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHH-HHcCCCCC-C--EE-EECC-EEEEEe
Confidence 555699999988888665432 34555555 445665 89998542 2 44 5553 445666
No 124
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=48.38 E-value=30 Score=27.39 Aligned_cols=35 Identities=14% Similarity=0.050 Sum_probs=26.4
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQ 104 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQ 104 (154)
++-++||=.||+|--..+.+.+.-. .-.+.+.|++
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 4569999999999999888876432 3467777864
No 125
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.35 E-value=68 Score=25.49 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=47.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.+-||=-+|+=|....--|...+. .|.|.|+-+.-+..-++-..|+|.- + =+++++.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~a--v-Ptvlvfkn 124 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISA--V-PTVLVFKN 124 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceee--e-eEEEEEEC
Confidence 566999999999999988877664 5899999999888888889999853 3 36777765
No 126
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=48.14 E-value=34 Score=24.40 Aligned_cols=33 Identities=6% Similarity=0.057 Sum_probs=21.4
Q ss_pred EEE-cCCCcchHHHHHHHHHHcC---CCcEEEEEcCC
Q 031708 73 VIY-DGVCHLCHGGVKWVIRADK---YRKIKFCCLQS 105 (154)
Q Consensus 73 VfY-DG~C~LC~~~V~fl~r~Dr---~~r~~F~~iQS 105 (154)
+|| ...|+.|...+..+.+.-. .+.+.|+.+..
T Consensus 28 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~ 64 (140)
T cd02971 28 FFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSV 64 (140)
T ss_pred EEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 334 7899999999887766332 23455555544
No 127
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=47.13 E-value=27 Score=26.74 Aligned_cols=32 Identities=22% Similarity=0.248 Sum_probs=23.3
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCC------CcEEEEEc
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKY------RKIKFCCL 103 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~------~r~~F~~i 103 (154)
.+|||=.||+|--....|.+.-.+ =.|.|.|+
T Consensus 2 ~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 2 DIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred eEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 589999999999888888664322 24566665
No 128
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=46.91 E-value=54 Score=21.90 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=25.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC----CCcEEEEEcCCc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK----YRKIKFCCLQSQ 106 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr----~~r~~F~~iQS~ 106 (154)
.+.|+...|+-|..++.-+.+.-. ++++.|+.+...
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d 44 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD 44 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC
Confidence 467889999999999988766331 457777777544
No 129
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=46.35 E-value=90 Score=22.96 Aligned_cols=60 Identities=10% Similarity=0.120 Sum_probs=38.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcc---------cHhHHHhcCCCh--hhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQA---------AEPYLRLCGLDR--EDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~---------g~~lL~~~Gl~~--e~~~~Sivlid~ 131 (154)
.+.|+=.+|+.|....-.+.+.-. +..+.++.+.... -.++.+.+++.. ..+ =+++++..
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-PT~v~~k~ 99 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGT-PTFVHITD 99 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCC-CEEEEEeC
Confidence 567889999999999888866543 3468888887421 124445666532 112 36776654
No 130
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=44.95 E-value=12 Score=22.98 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=12.5
Q ss_pred CCeEEEEcCCCcchH
Q 031708 69 QPGVVIYDGVCHLCH 83 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~ 83 (154)
...+|||+|.+..++
T Consensus 6 ~qLTIfY~G~V~Vfd 20 (36)
T PF06200_consen 6 AQLTIFYGGQVCVFD 20 (36)
T ss_pred CcEEEEECCEEEEeC
Confidence 568999999987776
No 131
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=44.90 E-value=42 Score=26.88 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=18.0
Q ss_pred CeEEEEcCCCcchHHHHHHHHH
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIR 91 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r 91 (154)
..++|+|-.|++|.....-+.+
T Consensus 87 ~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 87 TVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred eEEEEecCcCccHHHHHHHHHH
Confidence 5789999999999777766655
No 132
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=44.46 E-value=50 Score=24.21 Aligned_cols=58 Identities=5% Similarity=-0.093 Sum_probs=40.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHH-HhcCCChhhccceEEEEEC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYL-RLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL-~~~Gl~~e~~~~Sivlid~ 131 (154)
.+.||=.+|+-|......+.+... ++.+.|+.+.......+. ++|++.. . =++++..+
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~--~-PTl~lf~~ 93 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFY--F-PVIHLYYR 93 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcc--c-CEEEEEEC
Confidence 577899999999998877766542 356888888776666666 4788743 2 36666643
No 133
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=42.79 E-value=84 Score=19.69 Aligned_cols=64 Identities=8% Similarity=-0.058 Sum_probs=35.4
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC---c-ccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS---Q-AAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGW 144 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS---~-~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ 144 (154)
++++.-.|+.|.+..-++...+-. +....+.. . ....+++ +.+. ..+ +++++ |.....|.|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~---~~p~---~~vP~l~~~-~~~i~es~aI~~ 70 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIP--YEWVEVDILKGETRTPEFLA---LNPN---GEVPVLELD-GRVLAESNAILV 70 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCC--cEEEEecCCCcccCCHHHHH---hCCC---CCCCEEEEC-CEEEEcHHHHHH
Confidence 678888999999877776665543 44443321 1 1122222 1121 122 23343 777889988875
No 134
>PTZ00102 disulphide isomerase; Provisional
Probab=42.50 E-value=59 Score=28.45 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=40.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCce
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGL 134 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~ 134 (154)
.+.||-.+|+-|......+.+.. ..+++.|+-+...........+++.. . =++++++.++.
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~--~-Pt~~~~~~~~~ 443 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSA--F-PTILFVKAGER 443 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcc--c-CeEEEEECCCc
Confidence 57789999999998876664432 23568888777665555556666532 3 37777776543
No 135
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=42.04 E-value=91 Score=19.89 Aligned_cols=69 Identities=9% Similarity=-0.076 Sum_probs=36.8
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc-cHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA-AEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWG 145 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~-g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~i 145 (154)
.+++.-.|+.|.+..-.+......-.+..+.+.... ..+.++. + +...+ =++++++|.....|.|++.-
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~-~-p~~~v---P~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAV-N-PLGKI---PALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHh-C-CCCCC---CEEEECCCCEEECHHHHHhh
Confidence 567778899998765555543233356666664321 2223222 2 11111 12333457778899888753
No 136
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=41.73 E-value=59 Score=24.91 Aligned_cols=32 Identities=9% Similarity=0.227 Sum_probs=23.1
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL 103 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i 103 (154)
.+.||-.+|+-|..+...+.+...++ +.++-+
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l~~~~-~~vi~V 98 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNELAKDG-LPIVGV 98 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHHHHcC-CEEEEE
Confidence 56688999999999988887765433 444444
No 137
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=41.18 E-value=6.9 Score=25.12 Aligned_cols=10 Identities=40% Similarity=0.966 Sum_probs=5.3
Q ss_pred cCCCcchHHH
Q 031708 76 DGVCHLCHGG 85 (154)
Q Consensus 76 DG~C~LC~~~ 85 (154)
+|.||+|.+.
T Consensus 20 ~~~CPlC~r~ 29 (54)
T PF04423_consen 20 KGCCPLCGRP 29 (54)
T ss_dssp SEE-TTT--E
T ss_pred CCcCCCCCCC
Confidence 5689999874
No 138
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=40.38 E-value=44 Score=26.21 Aligned_cols=32 Identities=6% Similarity=0.148 Sum_probs=22.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCC--CcEEEEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKY--RKIKFCC 102 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~--~r~~F~~ 102 (154)
.+.|+=.+|+.|......+.+..++ -++.++.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4558888999999998888665433 2455554
No 139
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.08 E-value=49 Score=28.80 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=45.8
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHc--CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRAD--KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~D--r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
.-.+.||+-+|+.|...+.-+.+.. -++.+.+..+....-..+.+.|++.-- -++.+..+
T Consensus 49 ~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gf---Ptl~~f~~ 110 (383)
T KOG0191|consen 49 PWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGF---PTLKVFRP 110 (383)
T ss_pred ceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccC---cEEEEEcC
Confidence 3478999999999999998776542 245889999988888889999998543 25555544
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=39.67 E-value=79 Score=22.20 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=25.5
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQ 104 (154)
+||.=-.|+.|....+|+..++- .+.+.++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi~ 32 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEHGI--EYEFIDYL 32 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHcCC--CcEEEeec
Confidence 57777889999999999988764 57788774
No 141
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=39.67 E-value=90 Score=20.28 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=28.6
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHhcCC
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRLCGL 117 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~~Gl 117 (154)
+||-=-.|+.|....++|.+++- .+.+.++... ...+.+...|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i--~~~~~di~~~~~~~~~~~~~g~ 46 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGI--AFEEINIDEQPEAIDYVKAQGF 46 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCC--ceEEEECCCCHHHHHHHHHcCC
Confidence 34444679999999999987653 6788888643 23333444343
No 142
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=38.51 E-value=73 Score=23.09 Aligned_cols=63 Identities=13% Similarity=-0.020 Sum_probs=41.9
Q ss_pred CCCCCeEEEEcCCCcchHHHHHHHHHHc-----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 66 SLLQPGVVIYDGVCHLCHGGVKWVIRAD-----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 66 ~~~~~~vVfYDG~C~LC~~~V~fl~r~D-----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
......++||+.. .. ..+..+++... .+|++.|+-+.+......++.+|++.+++ -.+.+.+.
T Consensus 15 ~~~~~~~l~f~~~-~~-~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~-P~i~i~~~ 82 (111)
T cd03072 15 EGLPFLILFHDKD-DL-ESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADL-PVIAIDSF 82 (111)
T ss_pred CCCCeEEEEecch-HH-HHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHC-CEEEEEcc
Confidence 3344557788221 11 44555555433 34899999999988887899999999876 45655543
No 143
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=37.74 E-value=1.1e+02 Score=20.43 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=36.9
Q ss_pred EEEEcCCCcchHHHHHHHHHHcC--CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEe
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADK--YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQA 138 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr--~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~g 138 (154)
+-||=.+|+.|......+.+.-. ...+.|..+.... + ...||+.. + =++++ ++ ..++.|
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~--~-a~~~~v~~--v-Pti~i-~G-~~~~~G 63 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN--E-ILEAGVTA--T-PGVAV-DG-ELVIMG 63 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH--H-HHHcCCCc--C-CEEEE-CC-EEEEEe
Confidence 55777999999999877655442 3568999998532 2 45677643 2 25555 32 344444
No 144
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=37.52 E-value=1.6e+02 Score=22.92 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=38.3
Q ss_pred CCcchHHHHHHHHHHcCCCcEEEEEcCC--cccHhHHHhcCCC--hhhccceEEEEECCceEEEehHHHHHHH
Q 031708 78 VCHLCHGGVKWVIRADKYRKIKFCCLQS--QAAEPYLRLCGLD--REDVLRRFLFVEGPGLYHQASTGGGWGI 146 (154)
Q Consensus 78 ~C~LC~~~V~fl~r~Dr~~r~~F~~iQS--~~g~~lL~~~Gl~--~e~~~~Sivlid~~G~~y~gSdAvl~il 146 (154)
.|+.|++.-++|..+.- .+.-.++.. ...+++.+..|.. ...+ =.+||+ |++..|+|.+..+.
T Consensus 15 t~~~C~~ak~iL~~~~V--~~~e~DVs~~~~~~~EL~~~~g~~~~~~tv--PqVFI~--G~~IGG~del~~L~ 81 (147)
T cd03031 15 TFEDCNNVRAILESFRV--KFDERDVSMDSGFREELRELLGAELKAVSL--PRVFVD--GRYLGGAEEVLRLN 81 (147)
T ss_pred cChhHHHHHHHHHHCCC--cEEEEECCCCHHHHHHHHHHhCCCCCCCCC--CEEEEC--CEEEecHHHHHHHH
Confidence 59999999999977643 566677743 2233433333321 0111 235664 78888998887754
No 145
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=37.52 E-value=1.9e+02 Score=22.37 Aligned_cols=47 Identities=4% Similarity=-0.060 Sum_probs=35.4
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCC--CcEEEEEcCCcccHhHHHhcCCC
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKY--RKIKFCCLQSQAAEPYLRLCGLD 118 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~--~r~~F~~iQS~~g~~lL~~~Gl~ 118 (154)
+-||-.+|+-|....-.+.+...+ +...|.-+.-...+++...|++.
T Consensus 28 vdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~ 76 (142)
T PLN00410 28 IRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY 76 (142)
T ss_pred EEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc
Confidence 558999999999998888776532 44555666555677888899986
No 146
>PRK12559 transcriptional regulator Spx; Provisional
Probab=36.98 E-value=71 Score=24.08 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=25.5
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL 103 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i 103 (154)
.+|+.-..|+-|....+|+..++- .+.+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi--~~~~~di 32 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQI--DYTEKNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC--CeEEEEe
Confidence 578899999999999999988764 5666665
No 147
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=36.83 E-value=19 Score=30.04 Aligned_cols=14 Identities=36% Similarity=0.823 Sum_probs=10.3
Q ss_pred EEEEcCCCcchHHHH
Q 031708 72 VVIYDGVCHLCHGGV 86 (154)
Q Consensus 72 vVfYDG~C~LC~~~V 86 (154)
+-+|| +||||.+..
T Consensus 3 LYIYd-HCPfcvrar 16 (215)
T COG2999 3 LYIYD-HCPFCVRAR 16 (215)
T ss_pred eeEec-cChHHHHHH
Confidence 34666 899999853
No 148
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=36.55 E-value=41 Score=28.41 Aligned_cols=66 Identities=11% Similarity=0.009 Sum_probs=40.5
Q ss_pred EcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708 75 YDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 75 YDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr 147 (154)
..|+|+||++...-+-.++..=++.-++++.+- +-+. .+.+..= -=++..+ +.+.+.++.+-.++.
T Consensus 17 ~~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp--~~f~--~~sp~~~-~P~l~~d--~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 17 SLGDCPFCQRLFMTLELKGVPFKVTTVDLSRKP--EWFL--DISPGGK-PPVLKFD--EKWVTDSDKIEEFLE 82 (221)
T ss_pred cCCCChhHHHHHHHHHHcCCCceEEEeecCCCc--HHHH--hhCCCCC-CCeEEeC--CceeccHHHHHHHHH
Confidence 469999999998888766664466677776542 1121 2333321 1243333 567789988877554
No 149
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=35.33 E-value=90 Score=19.14 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=23.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS 105 (154)
.++|+=-.|+.|.+...++...+ -.+....+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~--i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERG--IPFEEVDVDE 34 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCC--CCeEEEeCCC
Confidence 45666678999999887776543 3567777753
No 150
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=34.96 E-value=71 Score=23.12 Aligned_cols=32 Identities=16% Similarity=0.344 Sum_probs=26.4
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS 105 (154)
+|++=-.|+.|....+|+..++- .+.++++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~~i--~~~~idi~~ 33 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEANGI--EYQFIDIGE 33 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHcCC--ceEEEecCC
Confidence 57778899999999999998764 688888743
No 151
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=34.24 E-value=94 Score=22.42 Aligned_cols=33 Identities=6% Similarity=0.038 Sum_probs=20.5
Q ss_pred EEE-cCCCcchHHHHHHHHHHc---CCCcEEEEEcCC
Q 031708 73 VIY-DGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS 105 (154)
Q Consensus 73 VfY-DG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS 105 (154)
+|| -..|+.|...+.-+.+.- .+..+.++.+..
T Consensus 34 ~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~ 70 (149)
T cd03018 34 VFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISV 70 (149)
T ss_pred EEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecC
Confidence 344 568999998887665532 123466665544
No 152
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=33.94 E-value=96 Score=22.58 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=34.2
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc-----CCcccHhHHHhcCCCh
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL-----QSQAAEPYLRLCGLDR 119 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i-----QS~~g~~lL~~~Gl~~ 119 (154)
.+||+--.|.=|....+|+..++. .+.|.++ ....-..+++..|++.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i--~~~~~di~~~p~t~~el~~~l~~~g~~~ 52 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGI--EPEVVKYLKNPPTKSELEAIFAKLGLTV 52 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCC--CeEEEeccCCCcCHHHHHHHHHHcCCch
Confidence 368899999999999999988754 6666665 3344455666667654
No 153
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=33.92 E-value=30 Score=26.23 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=20.3
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHc
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRAD 93 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~D 93 (154)
++.+|||=.|+.|-..-..+.+.-
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~ 25 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLK 25 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHH
Confidence 367999999999999888887654
No 154
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=33.35 E-value=68 Score=24.05 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=26.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQ 104 (154)
.+|+.=-.|+.|....+|+..++- .+.+.++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi--~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDI--PFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC--CcEEeecc
Confidence 568888999999999999988864 57777763
No 155
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=33.10 E-value=2.7e+02 Score=25.77 Aligned_cols=76 Identities=13% Similarity=0.084 Sum_probs=42.6
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CC-cEEEEEc--CCcccHhHHHhcCCChhhccceEEEEECCc---eEEE----e
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YR-KIKFCCL--QSQAAEPYLRLCGLDREDVLRRFLFVEGPG---LYHQ----A 138 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~-r~~F~~i--QS~~g~~lL~~~Gl~~e~~~~Sivlid~~G---~~y~----g 138 (154)
.+.||=.+|+.|......+.+.-. .+ .+.|+.+ ...........+++. .+ =+++++..+. ..|. .
T Consensus 375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~--~~-PTii~Fk~g~~~~~~Y~~g~R~ 451 (463)
T TIGR00424 375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG--SF-PTILFFPKHSSRPIKYPSEKRD 451 (463)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC--cc-ceEEEEECCCCCceeCCCCCCC
Confidence 567899999999988877655432 12 2555544 433222222467875 23 3677775432 2343 2
Q ss_pred hHHHHHHHHHc
Q 031708 139 STGGGWGITVN 149 (154)
Q Consensus 139 SdAvl~ilr~l 149 (154)
.++++.....+
T Consensus 452 ~e~L~~Fv~~~ 462 (463)
T TIGR00424 452 VDSLMSFVNLL 462 (463)
T ss_pred HHHHHHHHHhh
Confidence 56665555443
No 156
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=33.08 E-value=90 Score=22.59 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=34.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc-----CCcccHhHHHhcCCChhh
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL-----QSQAAEPYLRLCGLDRED 121 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i-----QS~~g~~lL~~~Gl~~e~ 121 (154)
.+||+=..|.-|....+|+..++- .+.|.++ ....-..+++..|...++
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i--~~~~~di~~~~~t~~el~~~l~~~~~~~~~ 54 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGI--EPEIVEYLKTPPTAAELRELLAKLGISPRD 54 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCC--CeEEEecccCCcCHHHHHHHHHHcCCCHHH
Confidence 368888999999999999988864 6677765 333444556666654443
No 157
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=33.07 E-value=81 Score=22.81 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=26.7
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQ 104 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQ 104 (154)
.+|++=-.|+.|....+|+..++- .+.|.++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi--~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQI--PFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC--ceEEEecC
Confidence 468888999999999999988754 68888873
No 158
>PHA02540 61 DNA primase; Provisional
Probab=32.49 E-value=88 Score=27.77 Aligned_cols=73 Identities=14% Similarity=0.070 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHH-cCCCcEEEEEc---CCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHH
Q 031708 68 LQPGVVIYDGVCHLCHGGVKWVIRA-DKYRKIKFCCL---QSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGG 143 (154)
Q Consensus 68 ~~~~vVfYDG~C~LC~~~V~fl~r~-Dr~~r~~F~~i---QS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl 143 (154)
-.+.++.||++.+- .+.++-+..+ +..-++...+. ++++-.+++..+|.+.++++. ++++ ..+.|.+|-+
T Consensus 256 ~~~vvl~~D~Da~~-~at~r~~~~l~~~g~~v~v~~~~~~~~kDpde~i~~~G~~~~~~~~---~i~~--n~~~gl~ak~ 329 (337)
T PHA02540 256 KDTRVWVLDNEPRH-PDTIKRISKLIDAGEKVVIWDKCPWPSKDINDMIMKGGATPEDIME---YIKS--NTYQGLMAKL 329 (337)
T ss_pred cceEEEEECCchhH-HHHHHHHHHHHHCCCeEEEecCCCCCCcCHHHHHHhcCCCHHHHHH---HHHH--ccccHHHHHH
Confidence 35789999999664 5666666655 33346666654 456677889999999888742 2332 3477888877
Q ss_pred HHH
Q 031708 144 WGI 146 (154)
Q Consensus 144 ~il 146 (154)
++-
T Consensus 330 ~~~ 332 (337)
T PHA02540 330 RLS 332 (337)
T ss_pred Hhh
Confidence 654
No 159
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.17 E-value=35 Score=23.27 Aligned_cols=17 Identities=35% Similarity=0.843 Sum_probs=14.3
Q ss_pred cCCCcchHHHHHHHHHH
Q 031708 76 DGVCHLCHGGVKWVIRA 92 (154)
Q Consensus 76 DG~C~LC~~~V~fl~r~ 92 (154)
-|.||+|.+-++=++|-
T Consensus 43 ~g~CPiCRapi~dvIkT 59 (62)
T KOG4172|consen 43 HGCCPICRAPIKDVIKT 59 (62)
T ss_pred CCcCcchhhHHHHHHHh
Confidence 48999999999888764
No 160
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=32.00 E-value=1.9e+02 Score=20.91 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=39.9
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc----CCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD----KYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D----r~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
.+.||=.+|+-|......+.... ...+|..+.+..... ...+.+++.-.-+ =++++++.+|...
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~g~~v-Pt~~f~~~~Gk~~ 90 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE-PKDEEFSPDGGYI-PRILFLDPSGDVH 90 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC-chhhhcccCCCcc-ceEEEECCCCCCc
Confidence 45577888999999988776631 234677777765322 2234555532223 3788998777753
No 161
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=30.49 E-value=1.6e+02 Score=19.39 Aligned_cols=67 Identities=10% Similarity=-0.107 Sum_probs=34.9
Q ss_pred cCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHHHH
Q 031708 76 DGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 76 DG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ilr 147 (154)
.+.|++|.+..-.+...+-. +.+..+....+......+.+.+. ..+ ++++++|....+|.|++.-+.
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i~--~~~~~~~~~~~~~~~~~~~~~p~---~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGLE--YKTVPVEFPDIPPILGELTSGGF---YTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CCcCChhHHHHHHHHhCCCC--CeEEEecCCCcccccccccCCCC---ceeCeEEECCCCEEeCHHHHHHHHH
Confidence 45699999876666655443 33333322222221112223332 222 345543667889999887554
No 162
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.24 E-value=2.1e+02 Score=21.58 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=47.8
Q ss_pred CCeEEEEcC-----CCcchHHHHHHHHHHcCCCcEEEEEc-CCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHH
Q 031708 69 QPGVVIYDG-----VCHLCHGGVKWVIRADKYRKIKFCCL-QSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG 142 (154)
Q Consensus 69 ~~~vVfYDG-----~C~LC~~~V~fl~r~Dr~~r~~F~~i-QS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv 142 (154)
++.+||.=| .|+|-.+.|+-+....- -+|.++++ +++.-++-|+.|.-=+ .+ -. ++| +|.+..|+|-+
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d~eiR~~lk~~s~WP-T~-PQ-Lyi--~GEfvGG~DIv 88 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGV-VDFAYVDVLQDPEIRQGLKEYSNWP-TF-PQ-LYV--NGEFVGGCDIV 88 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCC-cceeEEeeccCHHHHhccHhhcCCC-CC-ce-eeE--CCEEeccHHHH
Confidence 455666666 59999999998877654 56777776 6655554444443111 11 12 234 58899999988
Q ss_pred HHHHHH
Q 031708 143 GWGITV 148 (154)
Q Consensus 143 l~ilr~ 148 (154)
+.+++.
T Consensus 89 ~Em~q~ 94 (105)
T COG0278 89 REMYQS 94 (105)
T ss_pred HHHHHc
Confidence 887753
No 163
>PHA02278 thioredoxin-like protein
Probab=29.14 E-value=2.2e+02 Score=20.37 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=39.8
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC--CC--cEEEEEcCCcc--cHhHHHhcCCChhhccceEEEEECCce
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK--YR--KIKFCCLQSQA--AEPYLRLCGLDREDVLRRFLFVEGPGL 134 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr--~~--r~~F~~iQS~~--g~~lL~~~Gl~~e~~~~Sivlid~~G~ 134 (154)
.+-||=-+|+-|......+.+... .+ +|.++.+.... ...+.+++++.. + =++++..+ |+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~--i-PT~i~fk~-G~ 83 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMS--T-PVLIGYKD-GQ 83 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCcc--c-cEEEEEEC-CE
Confidence 466889999999999988866532 23 46667776431 235667888743 2 37777765 44
No 164
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=29.09 E-value=3e+02 Score=25.27 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=0.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCc----eEEEe
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPG----LYHQA 138 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G----~~y~g 138 (154)
.++|.|..|..|....+|+..... .+++.+.-.......+..+.||++ ... ++.+.+.+| -.|.|
T Consensus 370 l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~-~~P--~~~i~~~~~~~~~i~f~g 439 (555)
T TIGR03143 370 LLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKIT-KLP--TVALLDDDGNYTGLKFHG 439 (555)
T ss_pred EEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCC-cCC--EEEEEeCCCcccceEEEe
No 165
>PRK10026 arsenate reductase; Provisional
Probab=28.87 E-value=1.1e+02 Score=23.66 Aligned_cols=47 Identities=4% Similarity=0.074 Sum_probs=33.8
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc-----CCcccHhHHHhcCCC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL-----QSQAAEPYLRLCGLD 118 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i-----QS~~g~~lL~~~Gl~ 118 (154)
.++|+.=-.|.-|....+|+..++- .+.|..+ ..+.-+.+++..|+.
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi--~~~~~d~~~~ppt~~eL~~~l~~~g~~ 54 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGT--EPTIIHYLETPPTRDELVKLIADMGIS 54 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCC--CcEEEeeeCCCcCHHHHHHHHHhCCCC
Confidence 4678999999999999999998864 5666664 333344455555653
No 166
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=28.71 E-value=1.9e+02 Score=19.65 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=19.5
Q ss_pred CCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 031708 78 VCHLCHGGVKWVIRADKYRKIKFCCLQS 105 (154)
Q Consensus 78 ~C~LC~~~V~fl~r~Dr~~r~~F~~iQS 105 (154)
.||+|.+.-++|.+++-.-....+.-.+
T Consensus 10 ~CPyC~~ak~~L~~~g~~~~~i~~~~~~ 37 (80)
T COG0695 10 GCPYCKRAKRLLDRKGVDYEEIDVDDDE 37 (80)
T ss_pred CCchHHHHHHHHHHcCCCcEEEEecCCc
Confidence 4999999999999877643443444444
No 167
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=28.13 E-value=91 Score=24.74 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=15.5
Q ss_pred CeEEEEcCCCcchHHHHH
Q 031708 70 PGVVIYDGVCHLCHGGVK 87 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~ 87 (154)
..+-|||=.|+.|..+-.
T Consensus 40 ~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 40 QVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred eEEEEeCCCCccHHHhcc
Confidence 488999999999999643
No 168
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=28.11 E-value=1.5e+02 Score=18.29 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=28.8
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCc-ccHhHHHh
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQ-AAEPYLRL 114 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~-~g~~lL~~ 114 (154)
+||-=-.|+.|....+++.++.- .+.+.++... ..++.++.
T Consensus 2 ~vy~~~~C~~C~~~~~~L~~~~i--~y~~~dv~~~~~~~~~l~~ 43 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKEFLDEKGI--PYEEVDVDEDEEAREELKE 43 (60)
T ss_dssp EEEESTTSHHHHHHHHHHHHTTB--EEEEEEGGGSHHHHHHHHH
T ss_pred EEEEcCCCcCHHHHHHHHHHcCC--eeeEcccccchhHHHHHHH
Confidence 34555689999999999977663 6888888775 33333433
No 169
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=27.86 E-value=3e+02 Score=21.57 Aligned_cols=68 Identities=10% Similarity=0.041 Sum_probs=36.0
Q ss_pred EEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHHHHH
Q 031708 73 VIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWGITV 148 (154)
Q Consensus 73 VfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ilr~ 148 (154)
+++-..|++|.+..-++....- .+..+.+........++. .+. ..+ +++..+|.+..+|.|++.-+..
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl--~~e~~~~~~~~~~~~~~~---np~---g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNI--PVEKHVLLNDDEETPIRM---IGA---KQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCC--CeEEEECCCCcchhHHHh---cCC---CCcceEEeeCCeEeccHHHHHHHHHH
Confidence 5666779999865555544332 345555533222222221 111 222 2332457888999999885443
No 170
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=27.44 E-value=16 Score=21.28 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.1
Q ss_pred cCCCcchHHHHHHHHHHcC
Q 031708 76 DGVCHLCHGGVKWVIRADK 94 (154)
Q Consensus 76 DG~C~LC~~~V~fl~r~Dr 94 (154)
|..|.+|...|.++...-.
T Consensus 1 ~~~C~~C~~~v~~i~~~l~ 19 (39)
T PF05184_consen 1 GDECDICKFVVKEIEKLLK 19 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHH
Confidence 3469999999999977543
No 171
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.07 E-value=45 Score=26.67 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=26.9
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL 103 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i 103 (154)
+.++|.|-.|+.|++..+-++.....+..+|..+
T Consensus 121 ~~~~f~~~~~~~~~~a~~~~~~~~~~~~~~y~~~ 154 (244)
T COG1651 121 REFPFLDPACPYCRRAAQAARCAADQGIVRYWAF 154 (244)
T ss_pred EEeecCCCCcHHHHHHHHHHHHhccccchhHHHH
Confidence 4788999999999999999988877553444444
No 172
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=26.77 E-value=1.2e+02 Score=22.01 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=30.9
Q ss_pred CC-CcEEEEEcCCcccHhHHHhcCCChhh--ccceEEEEECCceEE
Q 031708 94 KY-RKIKFCCLQSQAAEPYLRLCGLDRED--VLRRFLFVEGPGLYH 136 (154)
Q Consensus 94 r~-~r~~F~~iQS~~g~~lL~~~Gl~~e~--~~~Sivlid~~G~~y 136 (154)
-+ +++.|+-+........++.+|++.++ . -.+.+++.++.-|
T Consensus 47 fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~-P~~~i~~~~~~KY 91 (111)
T cd03073 47 FPDRKLNFAVADKEDFSHELEEFGLDFSGGEK-PVVAIRTAKGKKY 91 (111)
T ss_pred CcCCeEEEEEEcHHHHHHHHHHcCCCcccCCC-CEEEEEeCCCCcc
Confidence 45 68999999988877789999999765 5 3676666444334
No 173
>PLN02335 anthranilate synthase
Probab=26.60 E-value=98 Score=25.21 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=47.1
Q ss_pred CCCCCCCCeEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHH
Q 031708 63 MEPSLLQPGVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGG 142 (154)
Q Consensus 63 ~~p~~~~~~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAv 142 (154)
.-.+.+++.+++.|..+.|....+++++++. -.+..++........+ .. .+. +.+++--+.|..+ ..+..
T Consensus 12 ~~~~~~~~~ilviD~~dsft~~i~~~L~~~g--~~~~v~~~~~~~~~~~-~~-----~~~-d~iVisgGPg~p~-d~~~~ 81 (222)
T PLN02335 12 INSSKQNGPIIVIDNYDSFTYNLCQYMGELG--CHFEVYRNDELTVEEL-KR-----KNP-RGVLISPGPGTPQ-DSGIS 81 (222)
T ss_pred hcccCccCcEEEEECCCCHHHHHHHHHHHCC--CcEEEEECCCCCHHHH-Hh-----cCC-CEEEEcCCCCChh-hccch
Confidence 4455667789999999999999999998874 4666666542111211 11 123 4666665555544 22334
Q ss_pred HHHHHHcC
Q 031708 143 GWGITVNG 150 (154)
Q Consensus 143 l~ilr~lg 150 (154)
+.+++.++
T Consensus 82 ~~~~~~~~ 89 (222)
T PLN02335 82 LQTVLELG 89 (222)
T ss_pred HHHHHHhC
Confidence 55555443
No 174
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=26.53 E-value=2e+02 Score=22.97 Aligned_cols=59 Identities=15% Similarity=0.108 Sum_probs=40.3
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCC-CcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEE
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKY-RKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYH 136 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~-~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y 136 (154)
.+-||-.+|+-|...-..+.....+ ..++|+-+.... ....|++. .+ =++++..+ |...
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i~--~l-PTlliyk~-G~~v 165 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPDK--NL-PTILVYRN-GDIV 165 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCCC--CC-CEEEEEEC-CEEE
Confidence 3459999999999988888665543 468999998753 24566653 23 47777754 5533
No 175
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=26.42 E-value=1.4e+02 Score=22.57 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=25.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEc
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCL 103 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~i 103 (154)
.+||.=-.|+-|....+|+..++- .+.+.++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i--~~~~~d~ 32 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQL--SYKEQNL 32 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEC
Confidence 467788899999999999988754 5777766
No 176
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=26.04 E-value=1.4e+02 Score=22.73 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=25.9
Q ss_pred CCCCCCCCC--eEEEEcCC-CcchHHHHHHHHHHcCC-CcEEEEEc
Q 031708 62 AMEPSLLQP--GVVIYDGV-CHLCHGGVKWVIRADKY-RKIKFCCL 103 (154)
Q Consensus 62 ~~~p~~~~~--~vVfYDG~-C~LC~~~V~fl~r~Dr~-~r~~F~~i 103 (154)
+++.....+ .+.||=++ |+-|..++.-+.+.-.+ ..+.++.+
T Consensus 37 v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~v 82 (167)
T PRK00522 37 VSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCI 82 (167)
T ss_pred EehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEE
Confidence 345554444 45677777 99999998777654322 34555554
No 177
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=26.03 E-value=2.5e+02 Score=22.28 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=14.2
Q ss_pred EEE-cCCCcchHHHHHHHHH
Q 031708 73 VIY-DGVCHLCHGGVKWVIR 91 (154)
Q Consensus 73 VfY-DG~C~LC~~~V~fl~r 91 (154)
.|| =..|+.|..++.-+.+
T Consensus 37 ~F~P~~~~p~C~~el~~l~~ 56 (187)
T PRK10382 37 FFYPADFTFVCPTELGDVAD 56 (187)
T ss_pred EEECCCCCCcCHHHHHHHHH
Confidence 345 6789999998876654
No 178
>PLN02378 glutathione S-transferase DHAR1
Probab=26.00 E-value=2.5e+02 Score=22.06 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=35.7
Q ss_pred CCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHHHH
Q 031708 77 GVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 77 G~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ilr 147 (154)
|.|++|.+..-.+....-.-.+..+++... ..+.++ +.+. ..+ ++.++ |.....|.|++.-+.
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~---inP~---G~VPvL~~~-~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLD---ISPQ---GKVPVLKID-DKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHH---hCCC---CCCCEEEEC-CEEecCHHHHHHHHH
Confidence 569999997666655554445566666432 223332 2222 122 23344 556789999887554
No 179
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=25.82 E-value=2e+02 Score=24.07 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=23.0
Q ss_pred eEEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcC
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQ 104 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQ 104 (154)
.+.|+--+|+.|..++..+.++- +...+.++.+.
T Consensus 103 vl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 103 LIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred EEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 57789999999999886655432 22336666554
No 180
>PRK10387 glutaredoxin 2; Provisional
Probab=25.41 E-value=3.1e+02 Score=20.91 Aligned_cols=69 Identities=12% Similarity=0.186 Sum_probs=38.1
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHHHHH
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWGITV 148 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~ilr~ 148 (154)
++++-..|+.|.+. +++++.-. =.++.+.+........++ +.+ ...+ +++.++|.+..+|.||+.-+..
T Consensus 2 ~Ly~~~~sp~~~kv-~~~L~~~g-i~y~~~~~~~~~~~~~~~---~~p---~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 2 KLYIYDHCPFCVKA-RMIFGLKN-IPVELIVLANDDEATPIR---MIG---QKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred EEEeCCCCchHHHH-HHHHHHcC-CCeEEEEcCCCchhhHHH---hcC---CcccceEEecCCeEecCHHHHHHHHHH
Confidence 57778889999984 45544422 235555553322111111 111 1233 3334468888999999886643
No 181
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=25.07 E-value=3e+02 Score=20.69 Aligned_cols=57 Identities=7% Similarity=0.061 Sum_probs=40.3
Q ss_pred EEEEcCCCcchHHHHHHHHHHcCC-Cc-EEEEEcCCcccHhHHHhcCCChhhccceEEEEEC
Q 031708 72 VVIYDGVCHLCHGGVKWVIRADKY-RK-IKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEG 131 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~Dr~-~r-~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~ 131 (154)
+-|+-.+|+-|...-..+.+...+ .+ +.|.-+.-....++-+.|++.- +-+++++.+
T Consensus 19 VdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~a---mPtfvffkn 77 (114)
T cd02986 19 LRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISY---IPSTIFFFN 77 (114)
T ss_pred EEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCcee---CcEEEEEEC
Confidence 338899999999998888876642 22 5555555556778888999842 247777765
No 182
>PLN02412 probable glutathione peroxidase
Probab=25.01 E-value=85 Score=24.07 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=23.3
Q ss_pred EEEEcCCCcchHHHHHHHHHHc---CCCcEEEEEcCC
Q 031708 72 VVIYDGVCHLCHGGVKWVIRAD---KYRKIKFCCLQS 105 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl~r~D---r~~r~~F~~iQS 105 (154)
+.|+..+|+.|..++..+.++- +...+.++.+..
T Consensus 34 v~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 34 IVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred EEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 4466999999998776665543 223488877753
No 183
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=24.52 E-value=84 Score=19.87 Aligned_cols=42 Identities=7% Similarity=0.165 Sum_probs=28.0
Q ss_pred EcCCCcchHHHHHHHHHHcCCC--cEEEEEcCCc-ccHhHHHhcC
Q 031708 75 YDGVCHLCHGGVKWVIRADKYR--KIKFCCLQSQ-AAEPYLRLCG 116 (154)
Q Consensus 75 YDG~C~LC~~~V~fl~r~Dr~~--r~~F~~iQS~-~g~~lL~~~G 116 (154)
|=-.|+.|......+....... .+.|..+... ..+.....++
T Consensus 40 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (127)
T COG0526 40 WAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFG 84 (127)
T ss_pred EcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHh
Confidence 4699999999988887755432 4666666554 4455555555
No 184
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=24.28 E-value=1.7e+02 Score=18.55 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHHc
Q 031708 68 LQPGVVIYDGVCHLCHGGVKWVIRAD 93 (154)
Q Consensus 68 ~~~~vVfYDG~C~LC~~~V~fl~r~D 93 (154)
..+.+|||++.|......+.++.+..
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~G 74 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKAG 74 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHhC
Confidence 45689999999877777777776553
No 185
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=24.03 E-value=1.3e+02 Score=25.66 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCC--CcchHHHHH-HHHHHcCCCcEEEEEcCCc
Q 031708 67 LLQPGVVIYDGV--CHLCHGGVK-WVIRADKYRKIKFCCLQSQ 106 (154)
Q Consensus 67 ~~~~~vVfYDG~--C~LC~~~V~-fl~r~Dr~~r~~F~~iQS~ 106 (154)
...++.|+|.|. ||+|....= ++..+.|.|.|.+....|.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~ 98 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSD 98 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecC
Confidence 346889999995 999986432 2356778899988888775
No 186
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=23.94 E-value=30 Score=26.14 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=4.8
Q ss_pred cCCCcchHHHHHH
Q 031708 76 DGVCHLCHGGVKW 88 (154)
Q Consensus 76 DG~C~LC~~~V~f 88 (154)
||.|+.|...|+=
T Consensus 27 dGkCpiCDS~Vrp 39 (106)
T PF03660_consen 27 DGKCPICDSYVRP 39 (106)
T ss_dssp TT--TTT------
T ss_pred CCcccccCCccCC
Confidence 8999999977653
No 187
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=23.89 E-value=3.7e+02 Score=21.24 Aligned_cols=17 Identities=6% Similarity=0.145 Sum_probs=12.8
Q ss_pred cCCCcchHHHHHHHHHH
Q 031708 76 DGVCHLCHGGVKWVIRA 92 (154)
Q Consensus 76 DG~C~LC~~~V~fl~r~ 92 (154)
-..|+.|..++.-+.++
T Consensus 35 a~~cp~C~~el~~l~~~ 51 (203)
T cd03016 35 ADFTPVCTTELGAFAKL 51 (203)
T ss_pred CCCCCcCHHHHHHHHHH
Confidence 45599999998766553
No 188
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=23.84 E-value=2e+02 Score=18.25 Aligned_cols=56 Identities=11% Similarity=-0.060 Sum_probs=31.8
Q ss_pred CCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHH
Q 031708 78 VCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGIT 147 (154)
Q Consensus 78 ~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr 147 (154)
.|+.|.+...++...+- .+....+.... +.+. ..+=+++.+|.+..++.|++.-+.
T Consensus 15 ~sp~~~~v~~~L~~~~i--~~~~~~~~~~~---------~~p~---g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 15 LSPECLKVETYLRMAGI--PYEVVFSSNPW---------RSPT---GKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCHHHHHHHHHHHhCCC--ceEEEecCCcc---------cCCC---cccCEEEECCEEEcCHHHHHHHHh
Confidence 68999988777766543 35555544311 2221 122222334777889988876543
No 189
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=23.12 E-value=59 Score=24.38 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=26.7
Q ss_pred EcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEE
Q 031708 75 YDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFV 129 (154)
Q Consensus 75 YDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivli 129 (154)
..|+|++-.+...--+|.. ..+++|+..|++++.+ .+.++
T Consensus 62 ~~g~Ch~~~Gn~~a~~Rv~-------------~~k~~L~~~Gi~~eRv--~~~~~ 101 (124)
T PF02662_consen 62 HPGDCHYREGNYRAEKRVE-------------RLKKLLEELGIEPERV--RLYWI 101 (124)
T ss_pred CCCCCCcchhhHHHHHHHH-------------HHHHHHHHcCCChhHe--EEEEe
Confidence 4679999866554433332 2456789999999987 45555
No 190
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=23.05 E-value=1.2e+02 Score=21.92 Aligned_cols=43 Identities=5% Similarity=0.124 Sum_probs=26.3
Q ss_pred CCCCCCCC--eEEEEcCC-CcchHHHHHHHHHHcC-CCcEEEEEcCC
Q 031708 63 MEPSLLQP--GVVIYDGV-CHLCHGGVKWVIRADK-YRKIKFCCLQS 105 (154)
Q Consensus 63 ~~p~~~~~--~vVfYDG~-C~LC~~~V~fl~r~Dr-~~r~~F~~iQS 105 (154)
.+.....+ .+.||=+. |+.|..++.-+.+.-. ...+.++.+..
T Consensus 20 ~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~ 66 (143)
T cd03014 20 SLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISA 66 (143)
T ss_pred eHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEEC
Confidence 34333444 45567887 7999999987765432 23466666543
No 191
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=23.02 E-value=4e+02 Score=22.06 Aligned_cols=64 Identities=6% Similarity=-0.104 Sum_probs=36.9
Q ss_pred CCCcchHHHHHHHHHHcCCCcEEEEEcCCccc-HhHHHhcCCChhhccceEEEEECCceEEEehHHHHHHHHH
Q 031708 77 GVCHLCHGGVKWVIRADKYRKIKFCCLQSQAA-EPYLRLCGLDREDVLRRFLFVEGPGLYHQASTGGGWGITV 148 (154)
Q Consensus 77 G~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~g-~~lL~~~Gl~~e~~~~Sivlid~~G~~y~gSdAvl~ilr~ 148 (154)
|.|++|.+..-.+....- .+.+..+.-... ..++ . +.+..- -=++++ +|.....|.||+.-+..
T Consensus 17 ~~cp~~~rv~i~L~ekgi--~~e~~~vd~~~~~~~fl-~--inP~g~--vPvL~~-~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGV--VFNVTTVDLKRKPEDLQ-N--LAPGTH--PPFLTY-NTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCC--CcEEEEECCCCCCHHHH-H--HCcCCC--CCEEEE-CCEEeecHHHHHHHHHH
Confidence 789999998887766443 455555432211 2333 2 222211 112344 47788999999886664
No 192
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=23.02 E-value=2.1e+02 Score=21.35 Aligned_cols=64 Identities=11% Similarity=-0.002 Sum_probs=36.1
Q ss_pred EEEEcCCCcchHHHHHHH------HHHcCCCcEEEEEcCCcccHhHHH--------hcCCChhhccceEEEEECCceEEE
Q 031708 72 VVIYDGVCHLCHGGVKWV------IRADKYRKIKFCCLQSQAAEPYLR--------LCGLDREDVLRRFLFVEGPGLYHQ 137 (154)
Q Consensus 72 vVfYDG~C~LC~~~V~fl------~r~Dr~~r~~F~~iQS~~g~~lL~--------~~Gl~~e~~~~Sivlid~~G~~y~ 137 (154)
+.|+=-.|+-|...-.-+ ...- +.+|.++-+..+...++-+ .+|.. . . =++++++.+|....
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~-G-~-Pt~vfl~~~G~~~~ 95 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQG-G-W-PLNVFLTPDLKPFF 95 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCC-C-C-CEEEEECCCCCEEe
Confidence 446777899999876522 1111 2357777776544333211 12321 1 2 37889988887665
Q ss_pred eh
Q 031708 138 AS 139 (154)
Q Consensus 138 gS 139 (154)
++
T Consensus 96 ~~ 97 (124)
T cd02955 96 GG 97 (124)
T ss_pred ee
Confidence 54
No 193
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=22.82 E-value=2.1e+02 Score=18.01 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=36.4
Q ss_pred eEEEEcCCCcchHHHHHHHHHHcCCCcEEEEEcCCcc----cHhHHHhcCCChhhccceE-EEEECCceEEEehHHHHHH
Q 031708 71 GVVIYDGVCHLCHGGVKWVIRADKYRKIKFCCLQSQA----AEPYLRLCGLDREDVLRRF-LFVEGPGLYHQASTGGGWG 145 (154)
Q Consensus 71 ~vVfYDG~C~LC~~~V~fl~r~Dr~~r~~F~~iQS~~----g~~lL~~~Gl~~e~~~~Si-vlid~~G~~y~gSdAvl~i 145 (154)
++|++.-.|+.|.+..-++....- .+....+.... ..++++ +.+. ..+ .++++ |.....|.|++.-
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi--~~e~~~i~~~~~~~~~~~~~~---~~p~---~~vP~l~~~-~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGL--ELNLKEVNLMKGEHLKPEFLK---LNPQ---HTVPTLVDN-GFVLWESHAILIY 71 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCC--CCEEEEecCccCCcCCHHHHh---hCcC---CCCCEEEEC-CEEEEcHHHHHHH
Confidence 367888999999987766666554 34444443211 123222 2222 111 22344 6667889887754
No 194
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=22.65 E-value=1.3e+02 Score=21.22 Aligned_cols=43 Identities=7% Similarity=0.106 Sum_probs=30.4
Q ss_pred HHHHHHHcCCCcEEEEEcCCcccHhHHHhcCCChhhccceEEEEE
Q 031708 86 VKWVIRADKYRKIKFCCLQSQAAEPYLRLCGLDREDVLRRFLFVE 130 (154)
Q Consensus 86 V~fl~r~Dr~~r~~F~~iQS~~g~~lL~~~Gl~~e~~~~Sivlid 130 (154)
-.|+-...+.+.+...--....-..+.+.+|++..++ .+++++
T Consensus 13 ~~flp~~~r~~~~~~~~~~~~tvkd~IEsLGVP~tEV--~~i~vN 55 (81)
T PF14451_consen 13 NDFLPPERRGGPFTHPFDGGATVKDVIESLGVPHTEV--GLILVN 55 (81)
T ss_pred hhhcChhhcCCceEEecCCCCcHHHHHHHcCCChHHe--EEEEEC
Confidence 3456555566666665555667788899999999988 466664
No 195
>PRK13191 putative peroxiredoxin; Provisional
Probab=22.20 E-value=4.3e+02 Score=21.38 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=24.7
Q ss_pred hHHHhcCCChhh----ccceEEEEECCceEEE----------ehHHHHHHHHHcC
Q 031708 110 PYLRLCGLDRED----VLRRFLFVEGPGLYHQ----------ASTGGGWGITVNG 150 (154)
Q Consensus 110 ~lL~~~Gl~~e~----~~~Sivlid~~G~~y~----------gSdAvl~ilr~lg 150 (154)
++.+.||+-.++ ...+..+||++|.+.. ..+.++++++.+.
T Consensus 107 ~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq 161 (215)
T PRK13191 107 NVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ 161 (215)
T ss_pred HHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 445667763211 2356778888887554 2566777776664
No 196
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=21.42 E-value=1.5e+02 Score=26.84 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=41.5
Q ss_pred CeEEEEcCCCcchHHHHHHHHHHcC-CCcEEEEEcCCcccHhHHHhcCCC
Q 031708 70 PGVVIYDGVCHLCHGGVKWVIRADK-YRKIKFCCLQSQAAEPYLRLCGLD 118 (154)
Q Consensus 70 ~~vVfYDG~C~LC~~~V~fl~r~Dr-~~r~~F~~iQS~~g~~lL~~~Gl~ 118 (154)
...+|+==.|+.|-..|+.+.+.-- +.++.+..+......++.+.|++.
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~ 168 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIM 168 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCc
Confidence 4789999999999999998876553 458999989888899999999875
No 197
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=21.01 E-value=1.9e+02 Score=21.70 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=34.2
Q ss_pred CCeEEEEcCCCcchHHHHHHHHHHcCCC---cEEEEEcCCcccHhHHHhcCCC-hhhccceEEEEECCceE
Q 031708 69 QPGVVIYDGVCHLCHGGVKWVIRADKYR---KIKFCCLQSQAAEPYLRLCGLD-REDVLRRFLFVEGPGLY 135 (154)
Q Consensus 69 ~~~vVfYDG~C~LC~~~V~fl~r~Dr~~---r~~F~~iQS~~g~~lL~~~Gl~-~e~~~~Sivlid~~G~~ 135 (154)
...+||.=.+|+=|...|=.+.+.-... .+++..- ....+++.+|--. ...+ =++++.|.+|..
T Consensus 43 ~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~r--d~~~el~~~~lt~g~~~I-P~~I~~d~~~~~ 110 (129)
T PF14595_consen 43 YNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILR--DENKELMDQYLTNGGRSI-PTFIFLDKDGKE 110 (129)
T ss_dssp EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-H--HHHHHHTTTTTT-SS--S-SEEEEE-TT--E
T ss_pred cEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEe--cCChhHHHHHHhCCCeec-CEEEEEcCCCCE
Confidence 3678999999999999999888754322 4555544 3344555544211 1223 478888876553
No 198
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=20.49 E-value=1.9e+02 Score=18.50 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=17.7
Q ss_pred CCCeEEEEcCCCcchHHHHHHHHHHc
Q 031708 68 LQPGVVIYDGVCHLCHGGVKWVIRAD 93 (154)
Q Consensus 68 ~~~~vVfYDG~C~LC~~~V~fl~r~D 93 (154)
....+|+||+.+.-+...+.++++..
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~G 80 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLRELG 80 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHcC
Confidence 35689999987776666666655543
No 199
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=20.10 E-value=2.8e+02 Score=21.36 Aligned_cols=74 Identities=9% Similarity=0.039 Sum_probs=42.6
Q ss_pred CCCCCCCCe--EEEEcCCCcchHHHHHHHHHHc----------CCCcEEEEEcCCcc----cHhHHHhcCCCh-------
Q 031708 63 MEPSLLQPG--VVIYDGVCHLCHGGVKWVIRAD----------KYRKIKFCCLQSQA----AEPYLRLCGLDR------- 119 (154)
Q Consensus 63 ~~p~~~~~~--vVfYDG~C~LC~~~V~fl~r~D----------r~~r~~F~~iQS~~----g~~lL~~~Gl~~------- 119 (154)
.+..+..+. +-|.=..|+-|..++-.|.+.- +...|.++.+.... .++.++.+|++.
T Consensus 19 ~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~ 98 (146)
T cd03008 19 IVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFED 98 (146)
T ss_pred cHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccc
Confidence 333444443 4477889999999998886621 12246666664432 223444554320
Q ss_pred ------------hhccceEEEEECCceEEE
Q 031708 120 ------------EDVLRRFLFVEGPGLYHQ 137 (154)
Q Consensus 120 ------------e~~~~Sivlid~~G~~y~ 137 (154)
..+ =+.++++++|++..
T Consensus 99 ~~~~~l~~~y~v~~i-Pt~vlId~~G~Vv~ 127 (146)
T cd03008 99 EFRRELEAQFSVEEL-PTVVVLKPDGDVLA 127 (146)
T ss_pred hHHHHHHHHcCCCCC-CEEEEECCCCcEEe
Confidence 012 35678888888654
Done!