BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031710
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 26 LQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRT 85
L T+E V++ C+ C V+++++G+ GV+ V+V + +++ +V PS+ V + T
Sbjct: 18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLE-DQMVLVHTTLPSQEVQALLEGT 76
Query: 86 GKKA 89
G++A
Sbjct: 77 GRQA 80
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 35 IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTV 68
+DC C RKV+ AV + GV QV V K+ V
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVV 45
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 26 LQTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV 69
L+T +++V +DC C+ K++ ++E +KGV + V ++TV
Sbjct: 7 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 51
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 26 LQTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVV 69
L+T +++V +DC C+ K++ ++E +KGV + V ++TV
Sbjct: 2 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 46
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 35 IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG 70
+ C C K +R V+ ++GV + V A+K+TV G
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG 47
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDV 59
QTV + V + C C VK+A+ ++GV +VDV
Sbjct: 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDV 36
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 27 QTVEVKVR-IDCEGCERKVKRAVEGMKGVK--QVDVERKANKVTVVGYVEPSKVVSRIAH 83
QT+ +++ +DC C ++RA+ + GV+ QV+ + V+ G P ++++
Sbjct: 2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTP-QILTDAVE 60
Query: 84 RTGKKAEIW 92
R G A +
Sbjct: 61 RAGYHARVL 69
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIA 82
T+++ V I CE C V +AV+ V V+ + KVT+ + ++ + IA
Sbjct: 1 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIA 56
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAH 83
T+++ V I CE C V +AV+ V V+ + KVT+ + ++ + IA
Sbjct: 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIAS 58
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIA 82
T+++ V I CE C V +AV+ V V+ + KVT+ + ++ + IA
Sbjct: 2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIA 57
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 28 TVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIA 82
T+++ V +DC C V +AV+ V V+ + KVT+ + ++ + IA
Sbjct: 1 TIQLTVPTMDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIA 56
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 26.2 bits (56), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 QTVEVKV-RIDCEGCERKVKRAVEGMKGVKQVDV 59
QTV + V + C C VK+A+ ++GV +VDV
Sbjct: 3 QTVTLAVPGMTCAACPITVKKALSKVEGVSKVDV 36
>pdb|2ZX0|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX0|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX1|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX2|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX3|B Chain B, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|A Chain A, Rhamnose-Binding Lectin Csl3
pdb|2ZX4|B Chain B, Rhamnose-Binding Lectin Csl3
Length = 195
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 35 IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAE 90
+ C+G + +KRA G + + R N++T + S S++A R G K+E
Sbjct: 13 LQCDGAKIHIKRANYGRRQHDVCSIGRPDNQLTDTNCLSQSS-TSKMAERCGGKSE 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,346,708
Number of Sequences: 62578
Number of extensions: 153665
Number of successful extensions: 443
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 13
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)