BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031710
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 250 bits (638), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 117/154 (75%), Positives = 138/154 (89%), Gaps = 1/154 (0%)
Query: 1 MGVVDHFSDYFDCSHGSSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVE 60
MGV+DH S+ FDCSHG K+KKR+QLQTVE+KV++DCEGCERKV+R+VEGMKGV V +E
Sbjct: 1 MGVLDHVSEMFDCSHGH-KIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLE 59
Query: 61 RKANKVTVVGYVEPSKVVSRIAHRTGKKAEIWPYVPYDVVAHPYAPGVYDRKAPAGYVRR 120
KA+KVTVVGYV+P+KVV+R++HRTGKK E+WPYVPYDVVAHPYA GVYD+KAP+GYVRR
Sbjct: 60 PKAHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRR 119
Query: 121 ADDPQVSQIARASSFEVRYTTAFSDENTQACAIM 154
DDP VSQ+ARASS EVRYTTAFSDEN AC +M
Sbjct: 120 VDDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153
>sp|Q6BK66|CCS1_DEBHA Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=CCS1 PE=3 SV=2
Length = 250
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 33 VRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKAEI 91
V ++C+ C V +++ + G+ + D++ K+N VT G V PS++V I TGK A I
Sbjct: 11 VPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAI-QSTGKDAII 68
>sp|Q6PWT7|CCS_PIG Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS
PE=2 SV=1
Length = 274
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 17 SSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSK 76
+S + R +E V++ C+ C V R+++G+ G++ V+V+ + N++ +V PS+
Sbjct: 2 ASDSRDRETACMLEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLE-NQMVLVQTTLPSQ 60
Query: 77 VVSRIAHRTGKKA 89
VV + TG++A
Sbjct: 61 VVQALLEDTGRQA 73
>sp|Q9WU84|CCS_MOUSE Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs
PE=1 SV=1
Length = 274
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 29 VEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKK 88
+E V++ C+ C V + ++G+ GV+ VDV+ + N++ +V PS+ V + TG++
Sbjct: 14 LEFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLE-NQMVLVQTTLPSQEVQALLESTGRQ 72
Query: 89 A 89
A
Sbjct: 73 A 73
>sp|O14618|CCS_HUMAN Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS
PE=1 SV=1
Length = 274
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 17 SSKLKKRRQLQTVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSK 76
+S + L T+E V++ C+ C V+++++G+ GV+ V+V + +++ +V PS+
Sbjct: 2 ASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLE-DQMVLVHTTLPSQ 60
Query: 77 VVSRIAHRTGKKA 89
V + TG++A
Sbjct: 61 EVQALLEGTGRQA 73
>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1
Length = 234
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 28 TVEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGK 87
T V ++CE C VK+A+ ++G++ VD + ++V G PS++V + GK
Sbjct: 4 TTTFAVPLECESCCDSVKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAV-QNIGK 62
Query: 88 KA 89
A
Sbjct: 63 DA 64
>sp|Q9JK72|CCS_RAT Copper chaperone for superoxide dismutase OS=Rattus norvegicus
GN=Ccs PE=1 SV=1
Length = 274
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 29 VEVKVRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKK 88
+E V++ C+ C V + ++G GV+ V+V+ + N++ +V PS+ V + TG++
Sbjct: 14 LEFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLE-NQMVLVQTTLPSQEVQALLESTGRQ 72
Query: 89 A 89
A
Sbjct: 73 A 73
>sp|Q6CIG2|CCS1_KLULA Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CCS1 PE=3 SV=1
Length = 245
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 33 VRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAH 83
V + CE C +++ ++ + G+K V + K N + V G+ PS +++ + +
Sbjct: 15 VEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALKN 65
>sp|P37617|ATZN_ECOLI Lead, cadmium, zinc and mercury-transporting ATPase
OS=Escherichia coli (strain K12) GN=zntA PE=1 SV=1
Length = 732
Score = 32.7 bits (73), Expect = 0.82, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 35 IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTV 68
+DC C RKV+ AV + GV QV V K+ V
Sbjct: 57 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVV 90
>sp|O32219|CADA_BACSU Cadmium, zinc and cobalt-transporting ATPase OS=Bacillus subtilis
(strain 168) GN=cadA PE=1 SV=1
Length = 702
Score = 32.7 bits (73), Expect = 0.91, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 35 IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTV 68
+DC C RK++ V+G+KG+ V A+ +TV
Sbjct: 13 LDCSNCARKIENGVKGIKGINGCAVNFAASTLTV 46
>sp|Q75DD6|CCS1_ASHGO Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=CCS1 PE=3 SV=1
Length = 238
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 33 VRIDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKVVSRIAHRTGKKA 89
V + C C ++ RA+ + GV++V + + V V G PS +V +A TG+ A
Sbjct: 14 VPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAA-TGRDA 69
>sp|B8DU32|DNLJ_BIFA0 DNA ligase OS=Bifidobacterium animalis subsp. lactis (strain AD011)
GN=ligA PE=3 SV=1
Length = 863
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 24 RQLQTVEVKVRIDCEGCERKVKRAVEG----------MKGVKQVDVERKANKVTV 68
R+ Q +EV+ +D G ERKV+ + G GVK +++ AN+ TV
Sbjct: 591 REAQIIEVRRHVDSHGKERKVRHRLGGSGLWHREPAFWSGVKDAPLKKDANRKTV 645
>sp|Q820D6|RPOC_TROWT DNA-directed RNA polymerase subunit beta' OS=Tropheryma whipplei
(strain Twist) GN=rpoC PE=3 SV=1
Length = 1286
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 3 VVDHFSDYFDCSHGSSKLKKRRQ---LQTV--EVKVRI-DCEGCERKVKRAVEGMKGVKQ 56
V D + DYFD G+ +K+R + LQ E+ V+I +C G +RKV RA++ ++ V
Sbjct: 242 VQDRYGDYFDACMGAEAIKRRLEDFDLQKTAQELGVQIVECRG-QRKV-RAIKRLRVVNS 299
Query: 57 VDVERKANKVTVVGYVEP 74
+ KAN +V V P
Sbjct: 300 F-ITSKANPACMVLDVIP 316
>sp|Q820D9|RPOC_TROW8 DNA-directed RNA polymerase subunit beta' OS=Tropheryma whipplei
(strain TW08/27) GN=rpoC PE=3 SV=2
Length = 1286
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 3 VVDHFSDYFDCSHGSSKLKKRRQ---LQTV--EVKVRI-DCEGCERKVKRAVEGMKGVKQ 56
V D + DYFD G+ +K+R + LQ E+ V+I +C G +RKV RA++ ++ V
Sbjct: 242 VQDRYGDYFDACMGAEAIKRRLEDFDLQKTAQELGVQIVECRG-QRKV-RAIKRLRVVNS 299
Query: 57 VDVERKANKVTVVGYVEP 74
+ KAN +V V P
Sbjct: 300 F-ITSKANPACMVLDVIP 316
>sp|Q59998|ATZN_SYNY3 Zinc-transporting ATPase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=ziaA PE=1 SV=1
Length = 721
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 26 LQTVEVKVR-IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVGYVEPSKV 77
L+T +++V +DC C+ K++ ++E +KGV + V ++TV +P +V
Sbjct: 7 LKTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVT--YDPKQV 57
>sp|P0CM12|DRE2_CRYNJ Fe-S cluster assembly protein DRE2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DRE2 PE=3 SV=1
Length = 321
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 12 DCSHGSSKLKKRRQLQTV----EVKVRIDCEG---CERKVKRAVEGMKGVKQVDVERKAN 64
DC+ G +L++ + QT E + EG +K+A EGM+G+ D +A
Sbjct: 221 DCTCGLKELEQEEEAQTSAAVQEAQKAFFLEGDDDIPENLKKATEGMEGIWPADKRAEAK 280
Query: 65 KVTVVG 70
K + G
Sbjct: 281 KTSSCG 286
>sp|P0CM13|DRE2_CRYNB Fe-S cluster assembly protein DRE2 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DRE2 PE=3 SV=1
Length = 321
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 12 DCSHGSSKLKKRRQLQTV----EVKVRIDCEG---CERKVKRAVEGMKGVKQVDVERKAN 64
DC+ G +L++ + QT E + EG +K+A EGM+G+ D +A
Sbjct: 221 DCTCGLKELEQEEEAQTSAAVQEAQKAFFLEGDDDIPENLKKATEGMEGIWPADKRAEAK 280
Query: 65 KVTVVG 70
K + G
Sbjct: 281 KTSSCG 286
>sp|Q60048|CADA_LISMN Probable cadmium-transporting ATPase OS=Listeria monocytogenes
GN=cadA PE=1 SV=1
Length = 711
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 35 IDCEGCERKVKRAVEGMKGVKQVDVERKANKVTVVG 70
+ C C K +R V+ ++GV + V A+K+TV G
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG 47
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,446,534
Number of Sequences: 539616
Number of extensions: 1970620
Number of successful extensions: 5326
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 5313
Number of HSP's gapped (non-prelim): 24
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)