BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031712
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer
Protein Mthpt1 From Medicago Truncatula
Length = 153
Score = 229 bits (585), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 109/153 (71%), Positives = 128/153 (83%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
MEVGQM+R+ ++Y KS+FMEG LD DE+NP+FV EVVSLFF DSER+L DL
Sbjct: 1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60
Query: 61 TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVK 120
+ A+DQ +IDFK VD+HVHQ KGSS+SIGA+R+KN+CVAFRNFCEEQNI+ C CLQQVK
Sbjct: 61 SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120
Query: 121 QEYCLVKNKLETLFRMEQQIVAAGGSIPMMELS 153
QEY LVKNKLETL R+EQQIVAAGGSIPMMEL+
Sbjct: 121 QEYLLVKNKLETLLRLEQQIVAAGGSIPMMELN 153
>pdb|4EUK|B Chain B, Crystal Structure
Length = 159
Score = 220 bits (561), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 102/154 (66%), Positives = 127/154 (82%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
M++ Q Q+ L +YTKSLF+EG+LD+ DESNPDFV++VV+LFF DS+R+LNDL
Sbjct: 6 MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 65
Query: 61 TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVK 120
+ +LDQ +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E C CLQQVK
Sbjct: 66 SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVK 125
Query: 121 QEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF 154
QEY LVKN+LETLF++EQQIVA+GG IP +EL F
Sbjct: 126 QEYYLVKNRLETLFKLEQQIVASGGMIPAVELGF 159
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|1YVI|B Chain B, X-Ray Structure Of Putative Histidine-Containing
Phosphotransfer Protein From Rice, Ak104879
pdb|2Q4F|A Chain A, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
pdb|2Q4F|B Chain B, Ensemble Refinement Of The Crystal Structure Of Putative
Histidine- Containing Phosphotransfer Protein From Rice,
Ak104879
Length = 149
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 94/138 (68%), Gaps = 1/138 (0%)
Query: 6 MQRRLLEYTKSLFMEGVLDNXXXXXXXXXDES-NPDFVAEVVSLFFADSERLLNDLTRAL 64
++ +L S+F +G++D DE P FV+EVV+LF D++R++N++ L
Sbjct: 6 LRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLL 65
Query: 65 DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYC 124
+QP ++F VD++VHQLKGSS+S+GA+++K C+ FR FC++++ +GC+ L V+ ++
Sbjct: 66 EQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFY 125
Query: 125 LVKNKLETLFRMEQQIVA 142
++NK +T+ ++EQQI A
Sbjct: 126 DLRNKFQTMLQLEQQIQA 143
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|B Chain B, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|C Chain C, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
pdb|1WN0|D Chain D, Crystal Structure Of Histidine-containing Phosphotransfer
Protein, Zmhp2, From Maize
Length = 145
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/135 (38%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 1 MEVGQMQRRLLEYTKSLFMEGVLDNX-XXXXXXXXDESNPDFVAEVVSLFFADSERLLND 59
M ++ +L S+F G++D D P FVAEVV+LF D++R++++
Sbjct: 1 MAAAALREQLNALLSSMFASGLVDEQFQQLQMLQEDGGTPGFVAEVVTLFCDDADRIISE 60
Query: 60 LTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQV 119
L LDQP +DF VD++VHQLKGSS+S+GA+++K C+ FR C+++N +GC+ L V
Sbjct: 61 LAALLDQPIVDFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQLCQDKNRDGCIMALAVV 120
Query: 120 KQEYCLVKNKLETLF 134
+ E+ ++NK +T+
Sbjct: 121 RNEFYDLRNKFQTML 135
>pdb|3ISQ|A Chain A, Crystal Structure Of Human 4-Hydroxyphenylpyruvate
Dioxygenase
Length = 393
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 10/63 (15%)
Query: 56 LLNDLTRAL-DQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMS 114
LL T+ + D+PT+ +++ H HQ G+ N F+ F EEQN+ G ++
Sbjct: 325 LLQIFTKPVQDRPTLFLEVIQRHNHQGFGAG---------NFNSLFKAFEEEQNLRGNLT 375
Query: 115 CLQ 117
++
Sbjct: 376 NME 378
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 89 GAERIKNACVAFRNFCEEQNIEGCMSCLQQV 119
G+ERI ++ V E QNI +SCL V
Sbjct: 250 GSERINSSAVTGERLRETQNINKSLSCLGDV 280
>pdb|2R25|A Chain A, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 167
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 59 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 88
>pdb|1QSP|A Chain A, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
pdb|1QSP|B Chain B, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
Length = 165
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 57 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 86
>pdb|1OXB|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|A Chain A, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|C Chain C, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|E Chain E, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|G Chain G, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|I Chain I, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|K Chain K, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 166
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 58 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 87
>pdb|1C02|A Chain A, Crystal Structure Of Yeast Ypd1p
pdb|1C02|B Chain B, Crystal Structure Of Yeast Ypd1p
Length = 166
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 58 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 87
>pdb|1C03|A Chain A, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|B Chain B, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|C Chain C, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|D Chain D, Crystal Structure Of Ypd1p (Triclinic Form)
Length = 168
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 74 VDSHVHQLKGSSSSIGAERIKNACVAFRNF 103
+D+ H LKGSS+++G +RI C +N
Sbjct: 59 LDNLGHFLKGSSAALGLQRIAWVCERIQNL 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,720,066
Number of Sequences: 62578
Number of extensions: 121452
Number of successful extensions: 255
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 13
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)