BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031713
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 5 KVMVAIDESECRHY---------ALQWALENLGDAISKSD---LIIFTARPTEFIYVQAS 52
KV VA++ S + Y A +W LE + + + SD L++ E +
Sbjct: 7 KVXVAVNASTIKDYPNPSISCKRAFEWTLEKIVRS-NTSDFKILLLHVQVVDEDGFDDVD 65
Query: 53 MFGAAPPDLLMSIQENQKKXXXXXXGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHK 112
A+P D Q N+ K + C + GV E + GDPK+VIC+ ++ +
Sbjct: 66 SIYASPEDFRDXRQSNKAKGLHLLEFFVNK-CHEIGVGCEAWIKTGDPKDVICQEVKRVR 124
Query: 113 IQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
L+VGS G Q+ F+G+VS +CV +A+CPV +++
Sbjct: 125 PDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVXTIKR 163
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
G+P+ I AE+ + L++VGSH R + LGS +N +H AKC VL VR
Sbjct: 95 GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
G+P+ I AE+ + L++VGSH R + LGS +N +H AKC VL VR
Sbjct: 95 GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVR 146
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 59 PDLLMS--IQENQKKXXXXXXGRAKEICAKHGVVAETMTEM-GDPKNVICEAAEKHKIQL 115
PD L +E ++ G +E A GV E + G P I +AA K L
Sbjct: 43 PDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDALLLEGVPAEAILQAARAEKADL 102
Query: 116 LIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+++G+ G + FLGS S V A CPVL+VR
Sbjct: 103 IVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137
>pdb|3IDF|A Chain A, The Crystal Structure Of A Usp-Like Protein From Wolinella
Succinogenes To 2.0a
pdb|3IDF|B Chain B, The Crystal Structure Of A Usp-Like Protein From Wolinella
Succinogenes To 2.0a
Length = 138
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 10/147 (6%)
Query: 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLM 63
KK++ AID++E A Q+ L+ G + L + +P +Y +A + AA ++ M
Sbjct: 2 KKLLFAIDDTEACERAAQYILDMFGKD-ADCTLTLIHVKPEFMLYGEAVL--AAYDEIEM 58
Query: 64 SIQENQKKXXXXXXGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSR 123
+E K + + G+ + + G+P ++ E A+ + LLI+GS
Sbjct: 59 KEEEKAK----LLTQKFSTFFTEKGINPFVVIKEGEPVEMVLEEAKDY--NLLIIGSSEN 112
Query: 124 GPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+ + F ++ + A PVL+V+
Sbjct: 113 SFLNKIFASHQDDF-IQKAPIPVLIVK 138
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 97 MGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
+G P I + AE + ++I+GSH + ++ LGSV+ + + PVLVV++
Sbjct: 105 VGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKR 159
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 92 ETMTEMGDPKNVICEAAEKH-KIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+T G PK+ I + A++H +I L+++G+ R +GS ++Y V +A C V+V+R
Sbjct: 87 KTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146
>pdb|2DUM|A Chain A, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|B Chain B, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|C Chain C, Crystal Structure Of Hypothetical Protein, Ph0823
pdb|2DUM|D Chain D, Crystal Structure Of Hypothetical Protein, Ph0823
Length = 170
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 93 TMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
T+ G P + I + AE+ + L+I+ S + + FLGS + K PVL++++
Sbjct: 98 TIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKE 156
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
G P I A K + L+++G+ + LGSV+ +A CPVLVV
Sbjct: 96 GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
Length = 144
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
G PK+ I A+ L+I+ SH R I LGS + V +A+C VLVVR
Sbjct: 93 GSPKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>pdb|3FDX|A Chain A, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae.
pdb|3FDX|B Chain B, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae
Length = 143
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
G PK+ I A+ L+I+ SH R I LGS + V +A+C VLVVR
Sbjct: 92 GSPKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 143
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 88 GVVAETMTEM--GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCP 145
G+ AE + GDP I +A+E + + GS ++ LGSVS +H++K P
Sbjct: 99 GIKAEVIKPFPAGDPVVEIIKASENY--SFIAXGSRGASKFKKILLGSVSEGVLHDSKVP 156
Query: 146 VLVVR 150
V + +
Sbjct: 157 VYIFK 161
Score = 33.1 bits (74), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 27/71 (38%)
Query: 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH 140
+E+ G+ E G P I E+ + GS G + LGS S +
Sbjct: 220 EEVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFXGSRGAGSVXTXILGSTSESVIR 279
Query: 141 NAKCPVLVVRK 151
+ PV V ++
Sbjct: 280 RSPVPVFVCKR 290
>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
Proteus Mirabilis Hi4320
Length = 319
Score = 33.1 bits (74), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 6 VMVAIDESECRHYALQWALENLGDAIS-----KSDLIIFTARPTEFIYVQASMFGAAPPD 60
V + E H AL L L + +S D+ + +A P I + + PD
Sbjct: 161 VAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIEL-----PD 215
Query: 61 LLMSIQENQKKXXXXXXGRAKEICAKHGVVAE-TMTEMGDPKNVICEAAEKHKIQLLIVG 119
++ N + KE+ K + E T + G P+ VI + E+ ++++G
Sbjct: 216 FDPNLYNNALRGQHLIA--XKELRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLG 273
Query: 120 SHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
R + AFLG+ + + + KC +L ++
Sbjct: 274 ILGRTGLSAAFLGNTAEQLIDHIKCDLLAIK 304
>pdb|2JAX|A Chain A, Universal Stress Protein Rv2623 From Mycobaterium
Tuberculosis
Length = 305
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 114 QLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
QL++VGS RG +GSV A+ PV+V R+
Sbjct: 257 QLVVVGSRGRGGYAGXLVGSVGETVAQLARTPVIVARE 294
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 6 VMVAIDESECRHYALQWALENLGDAISKSDL-IIFTARPTEFIYVQASMFGAAPPDLLMS 64
++V ID+S A++WA + + K L ++ P +++ + PP +L
Sbjct: 10 IIVGIDDSPAAQVAVRWAARDA--ELRKIPLTLVHAVSPEVATWLEVPL----PPGVLRW 63
Query: 65 IQENQKKXXXXXXGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLL-IVGSHSR 123
Q++ + ++ + G T+ P + + K +L +VG
Sbjct: 64 QQDHGRHLIDDALKVVEQASLRAG--PPTVHSEIVPAAAVPTLVDXSKDAVLXVVGCLGS 121
Query: 124 GPIQRAFLGSVSNYCVHNAKCPVLVV 149
G LGSVS+ + +A CPV+++
Sbjct: 122 GRWPGRLLGSVSSGLLRHAHCPVVII 147
>pdb|3CIS|A Chain A, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|B Chain B, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|C Chain C, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|D Chain D, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|E Chain E, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|F Chain F, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|G Chain G, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
pdb|3CIS|H Chain H, The Crystal Structure Of Rv2623 From Mycobacterium
Tuberculosis
Length = 309
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 114 QLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
QL++VGS RG +GSV A+ PV+V R+
Sbjct: 269 QLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARE 306
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 115 LLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
L++VG G LGSVS+ + +A CPV+++
Sbjct: 125 LMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVII 159
>pdb|1TQ8|A Chain A, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|B Chain B, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|C Chain C, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|D Chain D, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|E Chain E, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
pdb|1TQ8|F Chain F, Crystal Structure Of Protein Rv1636 From Mycobacterium
Tuberculosis H37rv
Length = 163
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 97 MGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
+G P + + A++ K LL+VG+ I LGSV AK VL+V
Sbjct: 104 VGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIV 156
>pdb|3AB7|A Chain A, Crystal Structure Of The Hypothetical Tandem-Type
Universal Stress Protein Ttha0350 From Thermus
Thermophilus Hb8
pdb|3AB7|B Chain B, Crystal Structure Of The Hypothetical Tandem-Type
Universal Stress Protein Ttha0350 From Thermus
Thermophilus Hb8
pdb|3AB8|A Chain A, Crystal Structure Of The Hypothetical Tandem-Type
Universal Stress Protein Ttha0350 Complexed With Atps.
pdb|3AB8|B Chain B, Crystal Structure Of The Hypothetical Tandem-Type
Universal Stress Protein Ttha0350 Complexed With Atps
Length = 268
Score = 30.8 bits (68), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 87 HGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPV 146
HGV A + GD + + + LL +G+ P++R GS + + NA+ PV
Sbjct: 211 HGVEASALVLGGDAADHLLRL--QGPGDLLALGA----PVRRLVFGSTAERVIRNAQGPV 264
Query: 147 LVVR 150
L R
Sbjct: 265 LTAR 268
>pdb|3D8C|A Chain A, Factor Inhibiting Hif-1 Alpha D201g Mutant In Complex With
Zn(Ii), Alpha-Ketoglutarate And Hif-1 Alpha 19mer
Length = 349
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIY 48
V + ++ + AL+W LE L + I D +++A +F+Y
Sbjct: 62 VVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLY 102
>pdb|2Y0I|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Tankyrase-2
(Tnks2) Fragment Peptide (21-Mer)
pdb|2YC0|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
R-2-Hydroxyglutarate
pdb|2YDE|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
S-2-Hydroxyglutarate
pdb|4AI8|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Daminozide
Length = 352
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIY 48
V + ++ + AL+W LE L + I D +++A +F+Y
Sbjct: 65 VVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLY 105
>pdb|2ILM|A Chain A, Factor Inhibiting Hif-1 Alpha D201a Mutant In Complex With
Fe(ii), Alpha-ketoglutarate And Hif-1 Alpha 35mer
Length = 349
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIY 48
V + ++ + AL+W LE L + I D +++A +F+Y
Sbjct: 62 VVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLY 102
>pdb|2XUM|A Chain A, Factor Inhibiting Hif (Fih) Q239h Mutant In Complex With
Zn(Ii), Nog And Asp-Substrate Peptide (20-Mer)
Length = 349
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIY 48
V + ++ + AL+W LE L + I D +++A +F+Y
Sbjct: 62 VVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLY 102
>pdb|1MZE|A Chain A, Human Factor Inhibiting Hif (Fih1)
pdb|1MZF|A Chain A, Human Factor Inhibiting Hif (Fih1) In Complex With
2-Oxoglutarate
Length = 351
Score = 29.6 bits (65), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIY 48
V + ++ + AL+W LE L + I D +++A +F+Y
Sbjct: 64 VVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLY 104
>pdb|1H2K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2L|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2M|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Hif-1 Alpha
Fragment Peptide
pdb|1H2N|A Chain A, Factor Inhibiting Hif-1 Alpha
pdb|1YCI|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
N-(Carboxycarbonyl)-D- Phenylalanine
pdb|2CGN|A Chain A, Factor Inhibiting Hif-1 Alpha With Succinate
pdb|2CGO|A Chain A, Factor Inhibiting Hif-1 Alpha With Fumarate
pdb|2W0X|A Chain A, Factor Inhibiting Hif-1 Alpha With Pyridine 2,4
Dicarboxylic Acid
pdb|2WA3|A Chain A, Factor Inhibiting Hif-1 Alpha With 2-(3-Hydroxyphenyl)-2-
Oxoacetic Acid
pdb|2WA4|A Chain A, Factor Inhibiting Hif-1 Alpha With N,3-Dihydroxybenzamide
pdb|3P3N|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1930-1949) Peptide
pdb|3P3P|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Notch 1
Fragment Mouse Notch (1997-2016) Peptide
pdb|3OD4|A Chain A, Crystal Structure Of Factor Inhibiting Hif-1 Alpha
Complexed With Inhibitor
pdb|4B7E|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-leu Peptide (20-mer)
pdb|4B7K|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Consensus
Ankyrin Repeat Domain-ser Peptide (20-mer)
Length = 349
Score = 29.6 bits (65), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIY 48
V + ++ + AL+W LE L + I D +++A +F+Y
Sbjct: 62 VVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLY 102
>pdb|3KCX|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With Clioquinol
pdb|3KCY|A Chain A, Factor Inhibiting Hif-1 Alpha In Complex With
8-Hydroxyquino
Length = 335
Score = 29.6 bits (65), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIY 48
V + ++ + AL+W LE L + I D +++A +F+Y
Sbjct: 48 VVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLY 88
>pdb|1IZ3|A Chain A, Dimeric Structure Of Fih (Factor Inhibiting Hif)
Length = 349
Score = 29.6 bits (65), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIY 48
V + ++ + AL+W LE L + I D +++A +F+Y
Sbjct: 62 VVLTDTNLVYPALKWDLEYLQENIGNGDFSVYSASTHKFLY 102
>pdb|1JMV|A Chain A, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|B Chain B, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|C Chain C, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
pdb|1JMV|D Chain D, Structure Of Haemophylus Influenzae Universal Stress
Protein At 1.85a Resolution
Length = 141
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 90 VAETMTEMGDPKNVICEAAEKHKIQLLIVGSH 121
++E ++ GD V+ +A E++ + LL+ G H
Sbjct: 80 ISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH 111
>pdb|3PNN|A Chain A, The Crystal Structure Of A Glycosyltransferase From
Porphyromonas Gingivalis W83
Length = 303
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQR-----AFLG 132
G+ E C V T++E G +C+ EKH L+ G R I+R +F
Sbjct: 144 GKQGEYCXVGYRVGNTLSESGGVSRGVCQVDEKH----LLTGVVERTGIERTDGTISFRD 199
Query: 133 SVSNYCVHNAKCPV 146
C PV
Sbjct: 200 ETGKICTLAEDAPV 213
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPP 59
DES C++ + + L ++ A+SK+ P I++ FG PP
Sbjct: 298 DESICKNTRVAYPLSHIEGALSKA----IAGHPKNVIFLTNDAFGVMPP 342
>pdb|2IZP|A Chain A, Bipd - An Invasion Prtein Associated With The Type-Iii
Secretion System Of Burkholderia Pseudomallei.
pdb|2IZP|B Chain B, Bipd - An Invasion Prtein Associated With The Type-Iii
Secretion System Of Burkholderia Pseudomallei.
pdb|2IXR|A Chain A, Bipd Of Burkholderia Pseudomallei
pdb|2J9T|A Chain A, Bipd Of Burkholderia Pseudomallei
pdb|2J9T|B Chain B, Bipd Of Burkholderia Pseudomallei
pdb|3NFT|A Chain A, Near-Atomic Resolution Analysis Of Bipd- A Component Of
The Type-Iii Secretion System Of Burkholderia
Pseudomallei
Length = 303
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 21 QWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPD 60
+W E LGDA+S SD + T P + I ++ S+ PPD
Sbjct: 204 RWRKE-LGDAVSISDSGVVTINPDKLIKMRDSL----PPD 238
>pdb|3DLO|A Chain A, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|B Chain B, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|C Chain C, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
pdb|3DLO|D Chain D, Structure Of Universal Stress Protein From Archaeoglobus
Fulgidus
Length = 155
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 99 DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+P + I + A++ +++G R P + GSV+ + A PV+ ++
Sbjct: 104 EPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155
>pdb|3QTB|A Chain A, Structure Of The Universal Stress Protein From
Archaeoglobus Fulgidus In Complex With Damp
pdb|3QTB|B Chain B, Structure Of The Universal Stress Protein From
Archaeoglobus Fulgidus In Complex With Damp
Length = 155
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 99 DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+P + I + A++ +++G R P + GSV+ + A PV+ ++
Sbjct: 104 EPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,926,833
Number of Sequences: 62578
Number of extensions: 124019
Number of successful extensions: 330
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 296
Number of HSP's gapped (non-prelim): 37
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)