BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031713
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 14/159 (8%)
Query: 5 KVMVAIDESECRHY---------ALQWALENLGDAISKSD---LIIFTARPTEFIYVQAS 52
KVMVA++ S + Y A +W LE + + + SD L++ E +
Sbjct: 7 KVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRS-NTSDFKILLLHVQVVDEDGFDDVD 65
Query: 53 MFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHK 112
A+P D Q N+ K L LL C + GV E + GDPK+VIC+ ++ +
Sbjct: 66 SIYASPEDFRDMRQSNKAKG-LHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVR 124
Query: 113 IQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
L+VGS G Q+ F+G+VS +CV +A+CPV+ +++
Sbjct: 125 PDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKR 163
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168)
GN=yxiE PE=3 SV=1
Length = 148
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 5 KVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAA--PPDLL 62
K++VAID S+ AL A+ +L I+ R E + +S+ G P +
Sbjct: 4 KMLVAIDGSDMSAKALDAAV-HLAKEQQAELSILHVGR--EAVVTTSSLTGIVYVPEHFI 60
Query: 63 MSIQENQKKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122
I+ KK L +L AKE A+ GV AET+ G+P + I A++ + L++VGS
Sbjct: 61 DEIRNEVKKEGLKILENAKEKAAEKGVQAETIYANGEPAHEILNHAKEKGVSLIVVGSRG 120
Query: 123 RGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
++ LGSVS+ + CPVL+VR
Sbjct: 121 ISGLKEMMLGSVSHKVSQLSTCPVLIVR 148
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 65 IQENQKKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRG 124
I E K+ L + K++ + GV T G P N I E AEK K L+++G+ +
Sbjct: 80 ISELLKEEGQEALKKVKKMAEEWGVKIHTEMLEGVPANEIVEFAEKKKADLIVMGTTGKT 139
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVRKP 152
++R LGSV+ + NA CPVLVV+KP
Sbjct: 140 GLERILLGSVAERVIKNAHCPVLVVKKP 167
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 7/155 (4%)
Query: 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARP--TEFIYVQASMFGAAP 58
M K++VA+D SE LQ A+ LG S S L++F P ++ + + S +G A
Sbjct: 1 MGYGKILVALDRSELAKEVLQQAI-ALGQKES-SQLMVFYCIPVDSQDLSIYPSFYGEAA 58
Query: 59 PDLLMSIQEN---QKKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQL 115
I+E+ Q+ A L + + GV E ++G+P I + A+ L
Sbjct: 59 IGFSQIIKEHLEEQQTEAREWLQSIVQQVQEDGVACEWDVKVGEPGRWIRDMAKNWDADL 118
Query: 116 LIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+++G + FLGSVS+Y +H+ +C VL+V+
Sbjct: 119 VVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIVQ 153
>sp|P45680|USPA2_COXBU Universal stress protein A homolog 2 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA2 PE=1 SV=1
Length = 146
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 10/118 (8%)
Query: 35 DLIIFTARPTEFIYVQASMFG-AAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAE- 92
D ++ E + + +G AA D+ + E KK R EI ++ + ++
Sbjct: 33 DAQLYLIHAVEHLSSYGAAYGVAAGVDVEDMLLEEAKK-------RMNEIASQLNISSDH 85
Query: 93 TMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+ ++G K +I E A+ + L+IVGSH R IQ LGS SN +H AKC VL VR
Sbjct: 86 QIVKVGPAKFLILEQAKNWGVDLIIVGSHGRHGIQ-LLLGSTSNAVLHGAKCDVLAVR 142
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1101 PE=3 SV=1
Length = 108
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 53 MFGAAPPDLLMSIQENQ----KKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAA 108
++ A +L M + + Q ++ L L + ++ + + +G P +IC+ A
Sbjct: 4 IYPAVGNELTMEVWQQQWQTFEQEGLDTLEKRRQQALALDIECQAEQILGSPGKIICQRA 63
Query: 109 EKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152
++ +++VG R + LGSV NY H+A C V VV P
Sbjct: 64 KQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVFVVPTP 107
>sp|Q4L751|Y1215_STAHJ Putative universal stress protein SH1215 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH1215 PE=3 SV=1
Length = 165
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 22/154 (14%)
Query: 4 KKVMVAIDESECRHYALQWALENLGDAISKSD-----LIIFTARPTEFIYVQASMFGAAP 58
K +++A+D S H A +WA D ++D + I +R Y ++ A
Sbjct: 5 KNILIAVDGS---HEA-EWAFNKAVDVAKRNDAKLTIVNIIDSR----TYSSYEVYDA-- 54
Query: 59 PDLLMSIQENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLL 116
E + + LL +E+ + GV ET E G PK +I + A + + L+
Sbjct: 55 -----QFTEKSRSFSEELLKGYQEVATRAGVTNVETRLEFGSPKAIIPKKLASELGVDLI 109
Query: 117 IVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+ G+ ++R +GSVS V +A C VLVVR
Sbjct: 110 MCGTSGLNAVERFIVGSVSEAIVRHAPCDVLVVR 143
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 114 QLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
QL++VGSH RG + LGSVSN +H A+ PV+V R+
Sbjct: 257 QLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVARQ 294
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 110 KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
++ +++++GS RG + R LGSVS+ V A CPV V+
Sbjct: 108 SNEAEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 114 QLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
QL++VGSH RG + LGSVSN +H A+ PV+V R+
Sbjct: 257 QLVVVGSHGRGGLTGMLLGSVSNAVLHAARVPVIVARQ 294
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 110 KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
++ +++++GS RG + R LGSVS+ V A CPV V+
Sbjct: 108 SNEAEMVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
>sp|Q2FXL6|Y1819_STAA8 Putative universal stress protein SAOUHSC_01819 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_01819 PE=3 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q6GFZ7|Y1788_STAAR Putative universal stress protein SAR1788 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR1788 PE=3 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q5HF64|Y1759_STAAC Putative universal stress protein SACOL1759 OS=Staphylococcus
aureus (strain COL) GN=SACOL1759 PE=3 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q99TF3|Y1710_STAAM Putative universal stress protein SAV1710 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV1710 PE=1 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q2FG28|Y1656_STAA3 Putative universal stress protein SAUSA300_1656 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_1656 PE=3 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q7A0N0|Y1653_STAAW Putative universal stress protein MW1653 OS=Staphylococcus aureus
(strain MW2) GN=MW1653 PE=3 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q6G8L7|Y1637_STAAS Putative universal stress protein SAS1637 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS1637 PE=3 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q2YTD0|Y1569_STAAB Putative universal stress protein SAB1569 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB1569 PE=3 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|Q7A551|Y1532_STAAN Putative universal stress protein SA1532 OS=Staphylococcus aureus
(strain N315) GN=SA1532 PE=1 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K A LL KE+ GV ET E G PK++I + A + L++ G+
Sbjct: 58 EKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSESIVRHAPCDVLVVR 143
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium
tuberculosis GN=Rv2026c PE=2 SV=1
Length = 294
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 6 VMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSI 65
V+V ID S A A + + + DL+ A + MF P L M
Sbjct: 161 VLVGIDGSPASEAATALAFDEA--SRRRVDLVALHA------WTDLGMF----PVLGMDW 208
Query: 66 QENQKKAALALLGRAKEICAKHGVVAETMTEMGD-PKNVICEAAEKHKIQLLIVGSHSRG 124
+E +K+ A L R ++ V + + D P + E +E+ QL++VGSH RG
Sbjct: 209 REREKREAEVLAERLAGWQEQYPDVRVHRSLVCDKPARWLLEHSEQ--AQLVVVGSHGRG 266
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
LGSVS+ H+ + PV+VVR
Sbjct: 267 GFSGMLLGSVSSAVAHSVRIPVIVVR 292
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 115 LLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
L++VGS G + R LGS+S +H+A+CPV ++
Sbjct: 113 LMVVGSQGMGALGRLLLGSISTALLHHARCPVAII 147
>sp|P73475|Y1230_SYNY3 Universal stress protein Slr1230 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1230 PE=3 SV=1
Length = 287
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%)
Query: 51 ASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEK 110
+S+ P ++ + NQ A+A LG A+++ K G E +G + I E
Sbjct: 188 SSLLADLPLHIVTVGKTNQDPQAIANLGTAEKVLEKAGFKLEVELLVGHAEEAIVRYQED 247
Query: 111 HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
+ I LL++G+H I+ +GS + + PVL R
Sbjct: 248 NAIDLLLMGAHGHSRIRHLVIGSTTAQVLRKTSIPVLTFR 287
>sp|P74897|YQA3_THEAQ Universal stress protein in QAH/OAS sulfhydrylase 3'region
OS=Thermus aquaticus PE=3 SV=1
Length = 137
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 67 ENQKKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPI 126
E + A+AL G +E + + G P I +AA K L+++G+ G +
Sbjct: 63 EKVRAEAMALTGVPRE---------DALLLQGRPAEAILQAAIGEKADLIVMGTRGLGAV 113
Query: 127 QRAFLGSVSNYCVHNAKCPVLVVR 150
FLGS S V A CPVL+VR
Sbjct: 114 GSLFLGSQSQKVVAEAPCPVLLVR 137
>sp|Q49YE0|Y1056_STAS1 Putative universal stress protein SSP1056 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1056 PE=3 SV=1
Length = 167
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEF-IYVQASMFGAAPPDLL 62
K +++A+D S H A +WA D ++D + + Y ++ A
Sbjct: 5 KSILIAVDGS---HEA-EWAFNKAVDVAKRNDAKLTVVNVIDSRTYSSYEVYDA------ 54
Query: 63 MSIQENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGS 120
E K + LL KE+ GV ET E G PK +I + A L++ G+
Sbjct: 55 -QFTEKSKNFSDDLLKGYKEVATNAGVKNVETRLEFGSPKAIIPKKLATDVDADLIMCGT 113
Query: 121 HSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V ++ C VLVVR
Sbjct: 114 SGLNAVERFIVGSVSEAIVRHSPCDVLVVR 143
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 109 EKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
E + QL++VGSH RG LGSVS+ +A PV+VVR
Sbjct: 251 EAKQAQLVVVGSHGRGGFTGMLLGSVSSRVAQSATTPVMVVR 292
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 22/152 (14%)
Query: 6 VMVAIDESECRHYALQWALE--NLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLM 63
++V +D S A++WA +L DA P ++V A + + P M
Sbjct: 10 ILVGVDSSAESDAAVRWAAREASLHDA------------PITLMHVIAPVVVSWPAGPYM 57
Query: 64 -SIQENQKKAALALLGRAKEICA-----KHGVVAETMTEMGDPKNVICEAAEKHKIQLLI 117
++ E Q++ A + +A+++ A HG+ +T + +A++ Q+++
Sbjct: 58 ATVLECQEENARHAIEQAQKVVADCLGETHGLTVQTEIRKESVARTLIDASKS--AQMVV 115
Query: 118 VGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
VG+ G + R LGS S +H A PV+VV
Sbjct: 116 VGNRGMGALGRVLLGSTSTSLLHYASGPVVVV 147
>sp|Q8CS61|Y1385_STAES Putative universal stress protein SE_1385 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_1385 PE=3 SV=1
Length = 166
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K + LL KE+ GV +T E G PK +I + A L++ G+
Sbjct: 58 EKSKHFSEELLKGYKEVATNAGVKNVDTRLEFGSPKAIIPKKLARDVGADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSEAIVRHAPCDVLVVR 143
>sp|Q5HNJ5|Y1273_STAEQ Putative universal stress protein SERP1273 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP1273 PE=3
SV=1
Length = 166
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 67 ENQKKAALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEA-AEKHKIQLLIVGSHSRG 124
E K + LL KE+ GV +T E G PK +I + A L++ G+
Sbjct: 58 EKSKHFSEELLKGYKEVATNAGVKNVDTRLEFGSPKAIIPKKLARDVGADLIMSGTSGLN 117
Query: 125 PIQRAFLGSVSNYCVHNAKCPVLVVR 150
++R +GSVS V +A C VLVVR
Sbjct: 118 AVERFIVGSVSEAIVRHAPCDVLVVR 143
>sp|Q57997|Y577_METJA Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0577 PE=1 SV=1
Length = 162
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 97 MGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151
+G P I + AE + ++I+GSH + ++ LGSV+ + + PVLVV++
Sbjct: 105 VGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKR 159
>sp|P0A5F8|Y2019_MYCBO Universal stress protein Mb2019 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb2019 PE=3 SV=1
Length = 317
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 114 QLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152
QL++VGSH RG LGSVS V++ + PV+V R P
Sbjct: 272 QLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVARIP 310
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 33/163 (20%)
Query: 6 VMVAIDESECRHYALQWA-----LENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPD 60
++V +D S C H A++WA + N+ + + + TA P + + + S F A
Sbjct: 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA-PEGWAF-EYSRFQEAQKR 67
Query: 61 LLM----------SIQENQKKAAL--ALLGRAKEICAK--HGVVAETMTEMGDPKNVICE 106
++ I E K AL + GRA +I + HG + T+ +
Sbjct: 68 EIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI--------- 118
Query: 107 AAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
++ ++++G +G + A LGSVS+ V +A PV V+
Sbjct: 119 ---SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
>sp|P0A5F7|Y1996_MYCTU Universal stress protein Rv1996/MT2052 OS=Mycobacterium
tuberculosis GN=Rv1996 PE=1 SV=1
Length = 317
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 114 QLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152
QL++VGSH RG LGSVS V++ + PV+V R P
Sbjct: 272 QLVVVGSHGRGGFPGMHLGSVSRAVVNSGQAPVIVARIP 310
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 33/163 (20%)
Query: 6 VMVAIDESECRHYALQWA-----LENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPD 60
++V +D S C H A++WA + N+ + + + TA P + + + S F A
Sbjct: 10 IVVGVDGSPCSHTAVEWAARDAQMRNVALRVVQVVPPVITA-PEGWAF-EYSRFQEAQKR 67
Query: 61 LLM----------SIQENQKKAAL--ALLGRAKEICAK--HGVVAETMTEMGDPKNVICE 106
++ I E K AL + GRA +I + HG + T+ +
Sbjct: 68 EIVEHSYLVAQAHQIVEQAHKVALEASSSGRAAQITGEVLHGQIVPTLANI--------- 118
Query: 107 AAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
++ ++++G +G + A LGSVS+ V +A PV V+
Sbjct: 119 ---SRQVAMVVLGYRGQGAVAGALLGSVSSSLVRHAHGPVAVI 158
>sp|P37903|USPF_ECOLI Universal stress protein F OS=Escherichia coli (strain K12) GN=uspF
PE=1 SV=2
Length = 144
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 96 EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
E G PK+ I E A+K ++I+ SH R I LGS + V +A+C VLVVR
Sbjct: 91 EEGSPKDRILELAKKIPAHMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P0A4P8|USPF_SHIFL Universal stress protein F OS=Shigella flexneri GN=uspF PE=3 SV=1
Length = 144
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 96 EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
E G PK+ I E A+K ++I+ SH R I LGS + V +A+C VLVVR
Sbjct: 91 EEGSPKDRILELAKKIPAHMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P0A4P6|USPF_ECOL6 Universal stress protein F OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspF PE=3 SV=1
Length = 144
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 96 EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
E G PK+ I E A+K ++I+ SH R I LGS + V +A+C VLVVR
Sbjct: 91 EEGSPKDRILELAKKIPAHMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|Q0TI19|USPF_ECOL5 Universal stress protein F OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=uspF PE=3 SV=1
Length = 144
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 96 EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
E G PK+ I E A+K ++I+ SH R I LGS + V +A+C VLVVR
Sbjct: 91 EEGSPKDRILELAKKIPAHMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P0A4P7|USPF_ECO57 Universal stress protein F OS=Escherichia coli O157:H7 GN=uspF PE=3
SV=1
Length = 144
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 96 EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
E G PK+ I E A+K ++I+ SH R I LGS + V +A+C VLVVR
Sbjct: 91 EEGSPKDRILELAKKIPAHMIIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P67091|USPF_SALTY Universal stress protein F OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspF PE=3 SV=1
Length = 144
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
G PK+ I E A+K ++I+ SH R I LGS + V +A+C VLVVR
Sbjct: 93 GSPKDKILEMAKKLPADMVIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P67092|USPF_SALTI Universal stress protein F OS=Salmonella typhi GN=uspF PE=3 SV=1
Length = 144
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
G PK+ I E A+K ++I+ SH R I LGS + V +A+C VLVVR
Sbjct: 93 GSPKDKILEMAKKLPADMVIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|O27222|Y1154_METTH Universal stress protein MTH_1154 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1154 PE=3 SV=1
Length = 146
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
GDP + I + AE+ + ++++G+ + + + LGSVS VH A C + +VR
Sbjct: 93 GDPADEIVKVAEEEDVDVIVMGT-GKSLVDKHLLGSVSEKVVHYAPCTIHLVR 144
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPVE 154
K++I E + + L+++GS R ++ LGS SNY V+ + PV+V RK ++
Sbjct: 520 KHLIIEMIDYIEPSLVVMGSRGRSHLKGVLLGSFSNYLVNKSSVPVMVARKKLK 573
>sp|Q83AC1|USPA1_COXBU Universal stress protein A homolog 1 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA1 PE=3 SV=1
Length = 144
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 95 TEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149
T G K+++ E AEK I L++VG+H + + LGS +N +H A C VL V
Sbjct: 87 TLSGVVKHMVIELAEKLNIDLIVVGTHGHHGLDK-LLGSRANAILHVATCDVLAV 140
>sp|Q8ZE81|USPE_YERPE Universal stress protein E OS=Yersinia pestis GN=uspE PE=3 SV=1
Length = 318
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 93 TMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
T E G P+ VI + AE ++++G+ R + AF+G+ + + + N KC +L ++
Sbjct: 243 THVEKGLPEEVIPDLAEHLNAGVVVLGTLGRTGLSAAFIGNTTEHVIDNLKCDLLAIK 300
>sp|P0AAC3|USPE_SHIFL Universal stress protein E OS=Shigella flexneri GN=uspE PE=3 SV=2
Length = 316
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 90 VAETMT--EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147
+ E MT E G P+ VI + AE + ++++G+ R I AFLG+ + + + +C +L
Sbjct: 238 INENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLL 297
Query: 148 VVR 150
V++
Sbjct: 298 VIK 300
>sp|P0AAC0|USPE_ECOLI Universal stress protein E OS=Escherichia coli (strain K12) GN=uspE
PE=1 SV=2
Length = 316
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 90 VAETMT--EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147
+ E MT E G P+ VI + AE + ++++G+ R I AFLG+ + + + +C +L
Sbjct: 238 INENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLL 297
Query: 148 VVR 150
V++
Sbjct: 298 VIK 300
>sp|P0AAC1|USPE_ECOL6 Universal stress protein E OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspE PE=3 SV=2
Length = 316
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 90 VAETMT--EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147
+ E MT E G P+ VI + AE + ++++G+ R I AFLG+ + + + +C +L
Sbjct: 238 INENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLL 297
Query: 148 VVR 150
V++
Sbjct: 298 VIK 300
>sp|P0AAC2|USPE_ECO57 Universal stress protein E OS=Escherichia coli O157:H7 GN=uspE PE=3
SV=2
Length = 316
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 90 VAETMT--EMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147
+ E MT E G P+ VI + AE + ++++G+ R I AFLG+ + + + +C +L
Sbjct: 238 INENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLL 297
Query: 148 VVR 150
V++
Sbjct: 298 VIK 300
>sp|P72817|Y1654_SYNY3 Universal stress protein Sll1654 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1654 PE=3 SV=1
Length = 157
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 68 NQKKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQ 127
+ +A LL A+ + ++ G+ +T+ G IC+ A++ L+++G G
Sbjct: 75 DSPEAVAKLLEAAQAVFSQQGIATKTIEREGMASFTICDVADEVNADLIVMGCRGLGLTT 134
Query: 128 RAFLGSVSNYCVHNAKCPVLVV 149
SV+ ++ + CPVLVV
Sbjct: 135 EGVAESVTARVINLSPCPVLVV 156
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168)
GN=nhaX PE=2 SV=2
Length = 166
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 25/166 (15%)
Query: 5 KVMVAIDESECRHYALQWALE---NLGDAIS--------KSDLIIFTARPT-EFIYVQAS 52
+++VA D SE AL A++ + AI+ + +I RP E Y+
Sbjct: 6 RIIVAFDGSENSKKALLTAIDLAKTVNAAITVAHSHDMKDNQTVIDPPRPAAEASYISGG 65
Query: 53 MFGAAPPDLLMS--------IQENQKKAALALLGRAKEICAKHGVVAETMTEMGDPKNVI 104
M PD L+S I E++ + +A A+ + + + GDP I
Sbjct: 66 MTSV--PDPLISDVTSPEPMIYEDRTEEVIA---EARMMLNEQQADGDIDILEGDPAESI 120
Query: 105 CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
E A + +++ GS + +++ GSVS + PVL+V+
Sbjct: 121 IEHANRISADMIVTGSRDQNRLKKLIFGSVSEKLSAKSDIPVLIVK 166
>sp|Q50777|Y1538_METTM Universal stress protein MTBMA_c15380 OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=MTBMA_c15380 PE=3 SV=1
Length = 143
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
G+P + I + AE+ + ++I+G+ + + + LGSVS VH A C + +VR
Sbjct: 90 GNPADEIVKLAEEEDVDVIIMGT-GKSLVDKHLLGSVSEKVVHYAPCTIHLVR 141
>sp|Q8ZP84|USPE_SALTY Universal stress protein E OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspE PE=3 SV=3
Length = 315
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 93 TMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
T E G P+ VI + AE + ++++G+ R + AFLG+ + + + +C +LV++
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVIDHLRCDLLVIK 300
>sp|Q8Z788|USPE_SALTI Universal stress protein E OS=Salmonella typhi GN=uspE PE=3 SV=3
Length = 315
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 34/58 (58%)
Query: 93 TMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150
T E G P+ VI + AE + ++++G+ R + AFLG+ + + + +C +LV++
Sbjct: 243 THVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVIDHLRCDLLVIK 300
>sp|P64649|Y031_HELPY Universal stress protein HP_0031 OS=Helicobacter pylori (strain
ATCC 700392 / 26695) GN=HP_0031 PE=3 SV=1
Length = 137
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQK 70
D EC + A+++A++ L ++ + + FIY ++ M + L ++
Sbjct: 9 DTQECYN-AIKFAVK-LAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEAL------EE 60
Query: 71 KAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAF 130
+ A ALL + ++ K + E++ + GD +V+ + A+ + LL++G+ + R F
Sbjct: 61 EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDY--DLLLIGASESNLLYRLF 118
Query: 131 LGSVSNYCVHNAKCPVLVVR 150
+ S N V + PV++ +
Sbjct: 119 I-SHQNSLVEQSSIPVVIAK 137
>sp|P64650|Y027_HELPJ Universal stress protein Jhp_0027 OS=Helicobacter pylori (strain
J99) GN=jhp_0027 PE=3 SV=1
Length = 137
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQK 70
D EC + A+++A++ L ++ + + FIY ++ M + L ++
Sbjct: 9 DTQECYN-AIKFAVK-LAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEAL------EE 60
Query: 71 KAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAF 130
+ A ALL + ++ K + E++ + GD +V+ + A+ + LL++G+ + R F
Sbjct: 61 EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDY--DLLLIGASESNLLYRLF 118
Query: 131 LGSVSNYCVHNAKCPVLVVR 150
+ S N V + PV++ +
Sbjct: 119 I-SHQNSLVEQSSIPVVIAK 137
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,168,821
Number of Sequences: 539616
Number of extensions: 1760639
Number of successful extensions: 4874
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 4804
Number of HSP's gapped (non-prelim): 95
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)