Query 031713
Match_columns 154
No_of_seqs 144 out of 1039
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 06:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 100.0 4.8E-32 1.6E-36 172.1 15.2 142 1-150 3-146 (146)
2 1mjh_A Protein (ATP-binding do 100.0 1.3E-30 4.3E-35 168.3 18.6 150 2-153 4-161 (162)
3 2dum_A Hypothetical protein PH 100.0 2.5E-30 8.5E-35 168.2 15.9 150 2-153 4-158 (170)
4 3hgm_A Universal stress protei 100.0 5.3E-31 1.8E-35 167.4 11.7 144 2-149 1-147 (147)
5 3fg9_A Protein of universal st 100.0 2.3E-30 8E-35 166.1 14.8 139 1-150 13-156 (156)
6 3idf_A USP-like protein; unive 100.0 6E-30 2.1E-34 161.0 15.8 136 3-150 1-138 (138)
7 3dlo_A Universal stress protei 100.0 4.3E-30 1.5E-34 164.9 14.5 131 1-150 22-155 (155)
8 3tnj_A Universal stress protei 100.0 8.2E-30 2.8E-34 162.5 14.2 146 1-154 4-150 (150)
9 1tq8_A Hypothetical protein RV 100.0 5.3E-30 1.8E-34 165.7 13.2 143 1-153 15-160 (163)
10 2gm3_A Unknown protein; AT3G01 100.0 3.1E-29 1.1E-33 163.7 15.9 149 2-152 4-164 (175)
11 2z08_A Universal stress protei 100.0 1.4E-29 4.7E-34 159.3 13.0 136 2-150 1-137 (137)
12 3olq_A Universal stress protei 100.0 2.9E-27 9.8E-32 167.4 17.0 146 1-152 5-151 (319)
13 3fdx_A Putative filament prote 100.0 3.1E-28 1.1E-32 154.0 10.8 138 3-150 1-143 (143)
14 1jmv_A USPA, universal stress 99.9 2.3E-27 7.9E-32 149.7 10.7 140 2-154 1-141 (141)
15 3loq_A Universal stress protei 99.9 2.3E-27 8E-32 166.3 9.2 143 1-153 20-164 (294)
16 3cis_A Uncharacterized protein 99.9 1.1E-25 3.9E-30 158.7 13.5 141 1-152 17-162 (309)
17 3ab8_A Putative uncharacterize 99.9 7.6E-26 2.6E-30 156.6 12.2 146 4-153 1-151 (268)
18 1q77_A Hypothetical protein AQ 99.9 2.4E-25 8.3E-30 139.9 12.5 132 1-150 2-138 (138)
19 3mt0_A Uncharacterized protein 99.9 9.1E-25 3.1E-29 152.9 14.8 137 2-152 133-277 (290)
20 3mt0_A Uncharacterized protein 99.9 7.2E-25 2.5E-29 153.4 13.6 123 2-152 6-129 (290)
21 3loq_A Universal stress protei 99.9 3.9E-24 1.3E-28 149.9 14.0 124 2-153 169-292 (294)
22 3cis_A Uncharacterized protein 99.9 1.4E-23 4.9E-28 148.0 14.5 136 2-152 170-307 (309)
23 3olq_A Universal stress protei 99.9 1.1E-23 3.9E-28 148.9 12.7 142 2-152 155-306 (319)
24 3ab8_A Putative uncharacterize 99.9 1.7E-21 5.9E-26 134.7 12.7 116 2-150 153-268 (268)
25 2iel_A Hypothetical protein TT 97.9 0.00075 2.6E-08 41.1 11.2 130 3-149 1-133 (138)
26 1wy5_A TILS, hypothetical UPF0 96.7 0.022 7.7E-07 40.0 10.0 94 3-122 24-135 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 96.7 0.019 6.6E-07 42.5 10.1 95 3-122 18-129 (464)
28 3g40_A Na-K-CL cotransporter; 96.4 0.12 4.2E-06 35.8 13.2 121 5-153 22-148 (294)
29 2xry_A Deoxyribodipyrimidine p 95.8 0.14 4.9E-06 38.1 10.5 114 13-151 48-161 (482)
30 4b4k_A N5-carboxyaminoimidazol 95.8 0.19 6.4E-06 32.2 9.5 69 77-153 38-110 (181)
31 3g40_A Na-K-CL cotransporter; 95.5 0.041 1.4E-06 38.1 6.2 99 18-152 180-278 (294)
32 3umv_A Deoxyribodipyrimidine p 95.3 0.3 1E-05 36.6 10.7 90 11-119 47-136 (506)
33 2ywx_A Phosphoribosylaminoimid 95.3 0.26 8.7E-06 30.9 8.6 68 76-151 14-82 (157)
34 4grd_A N5-CAIR mutase, phospho 95.2 0.24 8.2E-06 31.5 8.5 68 77-152 28-99 (173)
35 3oow_A Phosphoribosylaminoimid 95.1 0.3 1E-05 30.9 8.5 68 77-152 21-92 (166)
36 1xmp_A PURE, phosphoribosylami 95.0 0.32 1.1E-05 30.9 8.6 68 77-152 27-98 (170)
37 3trh_A Phosphoribosylaminoimid 95.0 0.32 1.1E-05 30.8 8.6 68 77-152 22-93 (169)
38 3kuu_A Phosphoribosylaminoimid 94.9 0.36 1.2E-05 30.7 8.6 68 77-152 28-99 (174)
39 3rg8_A Phosphoribosylaminoimid 94.6 0.48 1.6E-05 29.8 8.6 68 77-152 18-90 (159)
40 3ors_A N5-carboxyaminoimidazol 94.5 0.46 1.6E-05 30.0 8.4 68 77-152 19-90 (163)
41 1zun_A Sulfate adenylyltransfe 94.4 0.46 1.6E-05 33.6 9.3 93 3-123 46-157 (325)
42 1o4v_A Phosphoribosylaminoimid 94.4 0.47 1.6E-05 30.5 8.3 69 76-152 28-100 (183)
43 1u11_A PURE (N5-carboxyaminoim 94.3 0.51 1.7E-05 30.3 8.4 68 77-152 37-108 (182)
44 3lp6_A Phosphoribosylaminoimid 94.3 0.48 1.7E-05 30.2 8.2 68 77-152 23-94 (174)
45 1o97_C Electron transferring f 94.0 0.79 2.7E-05 31.3 9.4 82 9-123 32-123 (264)
46 2wq7_A RE11660P; lyase-DNA com 93.9 0.75 2.6E-05 34.9 10.0 128 5-151 30-161 (543)
47 1ni5_A Putative cell cycle pro 93.8 0.51 1.8E-05 34.6 8.8 92 3-122 13-118 (433)
48 3ih5_A Electron transfer flavo 93.6 0.47 1.6E-05 31.4 7.7 87 2-122 2-101 (217)
49 1efv_B Electron transfer flavo 92.2 1.8 6.3E-05 29.4 9.9 96 13-146 39-146 (255)
50 1efp_B ETF, protein (electron 92.0 2 6.8E-05 29.1 9.5 78 12-123 35-124 (252)
51 3bl5_A Queuosine biosynthesis 91.4 2 6.8E-05 28.0 10.4 38 1-44 1-38 (219)
52 1np7_A DNA photolyase; protein 91.4 3.5 0.00012 30.8 11.1 130 4-151 6-137 (489)
53 2nz2_A Argininosuccinate synth 91.0 3.5 0.00012 30.2 10.0 37 2-44 4-40 (413)
54 3k32_A Uncharacterized protein 90.8 2.3 7.8E-05 27.6 9.1 38 1-44 4-41 (203)
55 3tvs_A Cryptochrome-1; circadi 90.5 0.31 1.1E-05 36.9 4.3 120 11-150 13-135 (538)
56 3p9x_A Phosphoribosylglycinami 90.5 2.6 8.9E-05 27.8 9.8 85 3-122 2-91 (211)
57 1iv0_A Hypothetical protein; r 90.4 0.98 3.4E-05 25.9 5.5 52 99-151 38-93 (98)
58 3da8_A Probable 5'-phosphoribo 90.2 2.8 9.6E-05 27.7 8.7 84 2-122 11-99 (215)
59 2hma_A Probable tRNA (5-methyl 89.7 4.4 0.00015 29.2 9.6 96 3-122 9-133 (376)
60 4ds3_A Phosphoribosylglycinami 89.6 3.1 0.00011 27.4 8.8 87 1-122 5-96 (209)
61 3kcq_A Phosphoribosylglycinami 88.3 4 0.00014 27.0 8.6 86 2-122 7-92 (215)
62 3fy4_A 6-4 photolyase; DNA rep 88.2 2.8 9.6E-05 31.8 8.0 121 11-149 14-138 (537)
63 2e0i_A 432AA long hypothetical 87.6 3.5 0.00012 30.4 8.0 117 11-151 10-126 (440)
64 1owl_A Photolyase, deoxyribodi 87.4 3.8 0.00013 30.5 8.2 118 11-151 12-129 (484)
65 1k92_A Argininosuccinate synth 86.2 8.5 0.00029 28.5 11.0 37 2-44 9-45 (455)
66 2h31_A Multifunctional protein 85.9 5 0.00017 29.4 7.9 69 76-152 280-353 (425)
67 1dnp_A DNA photolyase; DNA rep 85.3 1.5 5E-05 32.7 5.0 91 13-121 12-104 (471)
68 1sur_A PAPS reductase; assimil 85.1 5.9 0.0002 25.8 11.3 36 4-45 45-80 (215)
69 2j07_A Deoxyribodipyrimidine p 84.7 9.6 0.00033 27.8 10.1 111 11-151 11-121 (420)
70 3s40_A Diacylglycerol kinase; 84.3 4 0.00014 28.3 6.7 70 76-152 27-98 (304)
71 2ywb_A GMP synthase [glutamine 84.2 11 0.00038 28.2 9.3 35 4-44 210-244 (503)
72 3fni_A Putative diflavin flavo 83.9 5.7 0.0002 24.6 8.5 49 74-124 19-68 (159)
73 2j4d_A Cryptochrome 3, cryptoc 83.8 12 0.00041 28.2 10.0 129 5-151 41-174 (525)
74 2qv7_A Diacylglycerol kinase D 83.8 4 0.00014 28.7 6.6 72 75-152 42-115 (337)
75 1kor_A Argininosuccinate synth 83.4 11 0.00037 27.4 8.9 37 4-45 1-37 (400)
76 3hly_A Flavodoxin-like domain; 83.1 5.2 0.00018 24.8 6.3 49 74-124 15-63 (161)
77 1nu0_A Hypothetical protein YQ 83.0 1.4 4.8E-05 27.0 3.5 52 99-150 40-95 (138)
78 3rjz_A N-type ATP pyrophosphat 82.0 1.8 6.2E-05 29.1 4.0 91 4-121 5-99 (237)
79 2l69_A Rossmann 2X3 fold prote 81.1 5.5 0.00019 22.5 6.7 38 75-112 88-125 (134)
80 2oq2_A Phosphoadenosine phosph 80.0 11 0.00039 25.4 9.5 40 3-45 41-80 (261)
81 2pg3_A Queuosine biosynthesis 79.6 11 0.00037 24.8 11.3 36 3-44 2-37 (232)
82 2wsi_A FAD synthetase; transfe 79.4 13 0.00045 25.8 9.3 95 4-124 54-169 (306)
83 1vhx_A Putative holliday junct 79.1 1.3 4.3E-05 27.6 2.3 53 99-151 42-98 (150)
84 3o1l_A Formyltetrahydrofolate 78.8 14 0.00048 25.8 9.5 83 3-122 105-191 (302)
85 2bon_A Lipid kinase; DAG kinas 78.6 8.9 0.00031 26.9 6.9 69 78-152 47-119 (332)
86 1jq5_A Glycerol dehydrogenase; 78.3 7.9 0.00027 27.6 6.6 69 76-152 46-119 (370)
87 1g63_A Epidermin modifying enz 78.1 3.3 0.00011 26.5 4.1 38 2-42 1-38 (181)
88 2der_A TRNA-specific 2-thiouri 77.8 17 0.00059 26.2 10.3 96 3-122 17-142 (380)
89 3lou_A Formyltetrahydrofolate 77.0 16 0.00054 25.4 9.8 83 3-122 95-181 (292)
90 3n0v_A Formyltetrahydrofolate 76.6 16 0.00055 25.2 9.8 83 3-122 90-176 (286)
91 1u3d_A Cryptochrome 1 apoprote 76.4 22 0.00074 26.7 11.7 117 11-151 21-138 (509)
92 3vzx_A Heptaprenylglyceryl pho 75.9 5.1 0.00018 26.7 4.7 47 103-152 22-68 (228)
93 2dpl_A GMP synthetase, GMP syn 75.2 14 0.00049 25.6 7.1 36 4-44 21-56 (308)
94 3tqi_A GMP synthase [glutamine 75.0 6.8 0.00023 29.5 5.7 36 4-44 231-266 (527)
95 2c5s_A THII, probable thiamine 73.5 24 0.00081 25.7 9.4 35 3-43 187-221 (413)
96 3en0_A Cyanophycinase; serine 73.0 7.9 0.00027 26.8 5.2 105 5-140 27-138 (291)
97 3ecs_A Translation initiation 72.7 22 0.00075 25.0 9.9 63 81-151 165-231 (315)
98 3w01_A Heptaprenylglyceryl pho 72.4 7.8 0.00027 26.0 4.9 48 103-153 27-74 (235)
99 1vbk_A Hypothetical protein PH 72.3 17 0.00057 25.3 6.8 81 4-121 180-264 (307)
100 3tqr_A Phosphoribosylglycinami 72.3 18 0.00062 23.8 9.5 84 3-122 5-93 (215)
101 3nbm_A PTS system, lactose-spe 72.1 8.1 0.00028 22.4 4.4 62 78-151 24-86 (108)
102 3zqu_A Probable aromatic acid 71.9 8.6 0.00029 25.3 5.0 37 2-41 3-39 (209)
103 2ejb_A Probable aromatic acid 71.2 8.7 0.0003 24.8 4.8 34 4-40 2-35 (189)
104 1t9k_A Probable methylthioribo 71.0 18 0.00063 25.7 6.8 64 82-151 202-269 (347)
105 1vp8_A Hypothetical protein AF 70.5 18 0.00062 23.5 6.0 74 74-149 29-104 (201)
106 3qjg_A Epidermin biosynthesis 70.3 8.6 0.00029 24.5 4.6 37 2-41 4-40 (175)
107 2yvk_A Methylthioribose-1-phos 70.1 20 0.00069 25.8 6.9 64 82-151 227-294 (374)
108 1y80_A Predicted cobalamin bin 69.5 18 0.00062 23.4 6.2 66 81-149 109-177 (210)
109 2p0y_A Hypothetical protein LP 69.4 4.7 0.00016 28.7 3.5 50 99-151 177-228 (341)
110 3nrb_A Formyltetrahydrofolate 69.0 15 0.00051 25.4 5.9 84 3-122 88-175 (287)
111 2a0u_A Initiation factor 2B; S 68.9 21 0.00073 25.8 6.8 64 82-151 231-298 (383)
112 3dm5_A SRP54, signal recogniti 68.4 33 0.0011 25.3 10.6 49 79-127 146-197 (443)
113 2ywr_A Phosphoribosylglycinami 68.3 22 0.00076 23.3 11.2 42 81-122 44-90 (216)
114 2yxb_A Coenzyme B12-dependent 68.2 19 0.00064 22.4 6.3 66 80-149 38-106 (161)
115 3ayv_A Putative uncharacterize 68.1 23 0.00078 23.3 7.1 80 17-112 75-154 (254)
116 2ohh_A Type A flavoprotein FPR 67.9 30 0.001 24.6 11.5 89 5-122 227-317 (404)
117 2ppv_A Uncharacterized protein 67.7 6.1 0.00021 28.0 3.8 50 99-151 166-217 (332)
118 2q7x_A UPF0052 protein SP_1565 67.0 5.6 0.00019 28.1 3.4 50 99-151 173-224 (326)
119 3i42_A Response regulator rece 67.0 15 0.00052 20.8 7.3 65 79-151 18-85 (127)
120 3obi_A Formyltetrahydrofolate 66.8 22 0.00075 24.6 6.4 84 3-122 89-176 (288)
121 3d0c_A Dihydrodipicolinate syn 66.8 30 0.001 24.1 9.1 77 72-150 66-144 (314)
122 3u0h_A Xylose isomerase domain 65.9 26 0.0009 23.2 8.0 76 19-113 85-171 (281)
123 1e5d_A Rubredoxin\:oxygen oxid 65.4 34 0.0011 24.3 12.5 47 75-123 268-314 (402)
124 2o2z_A Hypothetical protein; s 65.4 6.5 0.00022 27.7 3.5 50 99-151 167-218 (323)
125 2ojp_A DHDPS, dihydrodipicolin 65.2 31 0.001 23.7 7.8 76 72-150 55-134 (292)
126 1t5o_A EIF2BD, translation ini 65.1 22 0.00074 25.4 6.2 63 83-151 201-266 (351)
127 1meo_A Phosophoribosylglycinam 65.1 26 0.00089 22.9 11.5 84 4-122 1-89 (209)
128 1ccw_A Protein (glutamate muta 64.4 21 0.0007 21.5 6.7 67 80-149 23-91 (137)
129 3a5f_A Dihydrodipicolinate syn 64.3 32 0.0011 23.6 7.9 78 72-150 55-134 (291)
130 2vc6_A MOSA, dihydrodipicolina 64.0 32 0.0011 23.6 8.4 78 72-150 54-133 (292)
131 3iwt_A 178AA long hypothetical 63.8 24 0.00083 22.1 5.8 42 79-120 44-89 (178)
132 2f6u_A GGGPS, (S)-3-O-geranylg 63.8 14 0.00046 24.8 4.7 47 102-151 23-69 (234)
133 3inp_A D-ribulose-phosphate 3- 63.8 18 0.00062 24.4 5.4 44 77-121 182-225 (246)
134 2ehh_A DHDPS, dihydrodipicolin 63.7 33 0.0011 23.6 8.9 76 72-150 54-133 (294)
135 2rfg_A Dihydrodipicolinate syn 63.3 34 0.0012 23.6 8.0 78 72-150 54-133 (297)
136 1vl2_A Argininosuccinate synth 63.3 42 0.0014 24.6 9.5 37 2-44 13-49 (421)
137 2gkg_A Response regulator homo 63.1 18 0.00061 20.3 6.0 62 81-149 22-86 (127)
138 2v9d_A YAGE; dihydrodipicolini 63.1 37 0.0013 24.0 8.6 78 72-150 85-164 (343)
139 3grc_A Sensor protein, kinase; 63.0 20 0.00067 20.8 7.3 65 79-151 21-88 (140)
140 1f6k_A N-acetylneuraminate lya 63.0 34 0.0012 23.5 7.9 76 72-150 58-137 (293)
141 2yxg_A DHDPS, dihydrodipicolin 62.6 34 0.0012 23.4 8.6 76 72-150 54-133 (289)
142 2r8w_A AGR_C_1641P; APC7498, d 62.4 38 0.0013 23.8 9.0 78 72-150 88-167 (332)
143 2i2x_B MTAC, methyltransferase 62.4 33 0.0011 23.1 8.3 67 80-149 143-210 (258)
144 1o5k_A DHDPS, dihydrodipicolin 62.2 36 0.0012 23.6 8.6 78 72-150 66-145 (306)
145 1xky_A Dihydrodipicolinate syn 62.1 36 0.0012 23.5 8.9 78 72-150 66-145 (301)
146 3o1i_D Periplasmic protein TOR 62.1 32 0.0011 23.0 8.7 69 74-149 21-93 (304)
147 2wkj_A N-acetylneuraminate lya 62.0 37 0.0012 23.5 7.9 76 72-150 65-145 (303)
148 1qv9_A F420-dependent methylen 61.4 13 0.00046 25.0 4.2 41 107-151 59-99 (283)
149 1y5e_A Molybdenum cofactor bio 61.3 25 0.00084 22.0 5.4 40 80-119 36-79 (169)
150 2l69_A Rossmann 2X3 fold prote 59.2 12 0.00042 21.1 3.3 42 79-120 41-83 (134)
151 3m5v_A DHDPS, dihydrodipicolin 59.2 41 0.0014 23.2 8.9 77 72-150 61-141 (301)
152 1e2b_A Enzyme IIB-cellobiose; 59.0 20 0.00068 20.6 4.4 42 1-44 1-42 (106)
153 2q62_A ARSH; alpha/beta, flavo 58.9 38 0.0013 22.7 7.7 47 74-122 51-108 (247)
154 3cpr_A Dihydrodipicolinate syn 58.6 43 0.0015 23.2 9.0 76 72-150 70-149 (304)
155 2amj_A Modulator of drug activ 58.5 34 0.0012 22.0 7.9 48 73-122 32-80 (204)
156 1sbz_A Probable aromatic acid 58.3 25 0.00084 22.8 5.1 35 4-40 1-35 (197)
157 1b93_A Protein (methylglyoxal 58.0 31 0.0011 21.4 5.3 60 87-147 56-117 (152)
158 2a5l_A Trp repressor binding p 57.9 32 0.0011 21.6 6.2 11 112-122 71-81 (200)
159 2is8_A Molybdopterin biosynthe 57.8 27 0.00092 21.7 5.1 41 79-119 25-69 (164)
160 4dad_A Putative pilus assembly 57.7 26 0.00088 20.4 6.5 64 81-151 37-103 (146)
161 3auf_A Glycinamide ribonucleot 57.7 39 0.0013 22.4 11.9 42 81-122 65-111 (229)
162 3hv2_A Response regulator/HD d 57.6 27 0.00092 20.6 7.3 67 78-152 28-95 (153)
163 1qzu_A Hypothetical protein MD 57.4 16 0.00056 23.8 4.2 38 2-41 18-55 (206)
164 1w0d_A 3-isopropylmalate dehyd 57.3 49 0.0017 23.5 8.9 29 13-43 153-181 (337)
165 3ctl_A D-allulose-6-phosphate 57.1 26 0.00088 23.3 5.2 58 77-136 95-152 (231)
166 3l4e_A Uncharacterized peptida 57.0 37 0.0013 22.0 5.9 42 77-120 46-87 (206)
167 3kht_A Response regulator; PSI 56.8 27 0.00091 20.3 6.4 69 78-152 19-90 (144)
168 3h5i_A Response regulator/sens 56.5 27 0.00092 20.2 9.2 67 79-151 20-86 (140)
169 1wpw_A 3-isopropylmalate dehyd 56.5 50 0.0017 23.4 9.3 30 13-44 143-172 (336)
170 3e96_A Dihydrodipicolinate syn 56.1 48 0.0017 23.1 7.7 77 72-150 66-144 (316)
171 3pm6_A Putative fructose-bisph 55.7 15 0.00053 25.6 4.0 66 83-148 21-87 (306)
172 3egc_A Putative ribose operon 55.5 43 0.0015 22.3 10.0 70 74-151 24-95 (291)
173 2xxa_A Signal recognition part 55.2 59 0.002 23.8 10.2 27 16-44 114-140 (433)
174 1ydg_A Trp repressor binding p 55.0 24 0.00084 22.5 4.8 47 74-122 21-88 (211)
175 3inp_A D-ribulose-phosphate 3- 55.0 24 0.00082 23.8 4.8 59 77-137 123-181 (246)
176 2xw6_A MGS, methylglyoxal synt 54.8 22 0.00075 21.5 4.1 34 87-121 48-83 (134)
177 3eod_A Protein HNR; response r 54.3 28 0.00095 19.7 8.3 66 79-152 22-88 (130)
178 2a5l_A Trp repressor binding p 53.7 25 0.00084 22.1 4.6 41 1-43 3-44 (200)
179 1ycg_A Nitric oxide reductase; 53.6 56 0.0019 23.1 11.8 46 75-122 267-312 (398)
180 1ta9_A Glycerol dehydrogenase; 53.4 65 0.0022 23.8 7.6 69 75-152 105-178 (450)
181 1gvf_A Tagatose-bisphosphate a 53.3 13 0.00044 25.8 3.3 63 87-149 16-80 (286)
182 3j21_Z 50S ribosomal protein L 53.2 23 0.0008 19.9 4.0 19 103-121 22-40 (99)
183 3kbq_A Protein TA0487; structu 53.1 35 0.0012 21.6 5.1 42 78-119 26-69 (172)
184 3na8_A Putative dihydrodipicol 53.0 55 0.0019 22.8 8.3 78 72-150 78-157 (315)
185 3gl9_A Response regulator; bet 52.6 29 0.001 19.5 6.9 64 80-151 18-84 (122)
186 2o8v_A Phosphoadenosine phosph 52.5 49 0.0017 22.1 10.6 35 4-44 46-80 (252)
187 3ezx_A MMCP 1, monomethylamine 52.4 43 0.0015 21.9 5.6 67 80-149 112-183 (215)
188 3ctl_A D-allulose-6-phosphate 52.3 46 0.0016 22.1 5.8 43 78-121 155-198 (231)
189 3f6p_A Transcriptional regulat 52.2 29 0.001 19.4 8.2 64 80-151 18-81 (120)
190 1p3y_1 MRSD protein; flavoprot 52.1 16 0.00056 23.6 3.5 35 3-40 8-42 (194)
191 2qjg_A Putative aldolase MJ040 51.9 51 0.0017 22.1 7.4 68 75-150 132-209 (273)
192 3jy6_A Transcriptional regulat 51.9 48 0.0017 21.8 10.0 69 74-151 23-93 (276)
193 3u1h_A 3-isopropylmalate dehyd 51.9 66 0.0023 23.4 9.4 26 14-41 186-211 (390)
194 3av3_A Phosphoribosylglycinami 51.7 47 0.0016 21.7 11.4 42 81-122 46-92 (212)
195 1viz_A PCRB protein homolog; s 51.1 28 0.00096 23.4 4.6 47 102-151 23-69 (240)
196 3rfq_A Pterin-4-alpha-carbinol 51.0 46 0.0016 21.3 5.6 42 78-119 52-96 (185)
197 3gt7_A Sensor protein; structu 51.0 36 0.0012 20.1 8.4 65 79-151 22-89 (154)
198 1w2w_B 5-methylthioribose-1-ph 50.9 15 0.00051 23.7 3.1 62 84-151 26-93 (191)
199 3l21_A DHDPS, dihydrodipicolin 50.6 60 0.002 22.5 8.8 78 72-150 69-148 (304)
200 1mkz_A Molybdenum cofactor bio 50.5 44 0.0015 20.9 5.7 41 79-119 32-76 (172)
201 1jkx_A GART;, phosphoribosylgl 50.2 50 0.0017 21.5 12.0 84 4-122 1-89 (212)
202 3b4u_A Dihydrodipicolinate syn 50.2 59 0.002 22.3 6.6 77 73-150 58-140 (294)
203 3elf_A Fructose-bisphosphate a 49.4 25 0.00085 25.1 4.3 70 80-149 12-93 (349)
204 3cg4_A Response regulator rece 49.3 36 0.0012 19.6 7.1 65 79-151 22-89 (142)
205 2yvq_A Carbamoyl-phosphate syn 49.2 30 0.001 21.0 4.2 62 84-147 63-129 (143)
206 1xrs_A D-lysine 5,6-aminomutas 49.2 79 0.0027 23.5 8.0 42 91-132 153-197 (516)
207 1vmd_A MGS, methylglyoxal synt 49.0 41 0.0014 21.5 4.9 60 87-147 72-133 (178)
208 2q5c_A NTRC family transcripti 49.0 50 0.0017 21.2 6.9 48 93-152 31-79 (196)
209 3n4p_A Terminase subunit UL89 48.5 63 0.0021 22.1 7.7 98 3-118 131-237 (279)
210 3flk_A Tartrate dehydrogenase/ 48.3 73 0.0025 22.9 9.1 28 14-42 166-193 (364)
211 3rpe_A MDAB, modulator of drug 48.3 56 0.0019 21.5 6.1 47 74-122 46-93 (218)
212 3a11_A Translation initiation 47.5 72 0.0025 22.6 7.8 62 82-151 186-251 (338)
213 1vlc_A 3-isopropylmalate dehyd 47.4 76 0.0026 22.8 9.3 29 14-44 174-202 (366)
214 4a17_F RPL7A, 60S ribosomal pr 47.3 58 0.002 22.1 5.6 73 73-151 101-175 (255)
215 3eb2_A Putative dihydrodipicol 47.3 67 0.0023 22.1 9.4 78 73-151 59-138 (300)
216 3cu2_A Ribulose-5-phosphate 3- 47.2 53 0.0018 21.9 5.5 46 75-121 172-219 (237)
217 1w3i_A EDA, 2-keto-3-deoxy glu 47.0 64 0.0022 22.2 6.1 52 99-150 76-130 (293)
218 2q9u_A A-type flavoprotein; fl 47.0 75 0.0026 22.6 13.1 74 74-149 271-347 (414)
219 3q94_A Fructose-bisphosphate a 46.8 24 0.00081 24.5 3.8 63 87-149 19-86 (288)
220 3pzy_A MOG; ssgcid, seattle st 46.5 35 0.0012 21.2 4.3 41 79-120 31-74 (164)
221 2fz5_A Flavodoxin; alpha/beta 46.4 41 0.0014 19.5 8.1 44 74-123 14-57 (137)
222 3qze_A DHDPS, dihydrodipicolin 46.3 72 0.0025 22.2 8.7 78 72-150 77-156 (314)
223 1x0l_A Homoisocitrate dehydrog 46.2 76 0.0026 22.5 9.4 30 13-43 143-172 (333)
224 2nuw_A 2-keto-3-deoxygluconate 46.0 62 0.0021 22.2 5.9 52 99-150 76-130 (288)
225 2g2c_A Putative molybdenum cof 46.0 41 0.0014 20.9 4.6 36 84-119 38-76 (167)
226 2vzf_A NADH-dependent FMN redu 45.9 54 0.0019 20.7 6.3 47 74-122 19-79 (197)
227 3daq_A DHDPS, dihydrodipicolin 45.6 71 0.0024 21.9 7.8 78 72-150 56-135 (292)
228 3udu_A 3-isopropylmalate dehyd 45.1 83 0.0028 22.6 9.1 26 14-41 167-192 (361)
229 3m9w_A D-xylose-binding peripl 45.1 68 0.0023 21.6 10.2 71 75-151 19-91 (313)
230 2r91_A 2-keto-3-deoxy-(6-phosp 44.7 72 0.0025 21.8 7.5 73 72-150 52-129 (286)
231 3qc0_A Sugar isomerase; TIM ba 44.7 64 0.0022 21.2 5.9 80 16-112 81-169 (275)
232 3dff_A Teicoplanin pseudoaglyc 44.6 71 0.0024 21.7 10.9 48 102-149 138-185 (273)
233 3tva_A Xylose isomerase domain 44.6 68 0.0023 21.4 7.5 76 16-112 100-175 (290)
234 3vmk_A 3-isopropylmalate dehyd 44.4 87 0.003 22.6 9.3 26 14-41 179-204 (375)
235 1rtt_A Conserved hypothetical 44.4 23 0.00079 22.3 3.3 19 102-122 64-82 (193)
236 3miz_A Putative transcriptiona 44.4 67 0.0023 21.5 5.9 66 75-149 31-98 (301)
237 3ovp_A Ribulose-phosphate 3-ep 44.3 60 0.0021 21.4 5.4 55 78-134 102-156 (228)
238 2kyr_A Fructose-like phosphotr 44.0 30 0.001 20.2 3.4 43 78-122 26-70 (111)
239 3qk7_A Transcriptional regulat 44.0 69 0.0024 21.4 10.2 70 74-151 26-96 (294)
240 3to5_A CHEY homolog; alpha(5)b 44.0 49 0.0017 19.6 7.4 65 80-151 28-95 (134)
241 3flu_A DHDPS, dihydrodipicolin 44.0 76 0.0026 21.8 8.7 78 72-150 61-140 (297)
242 3l49_A ABC sugar (ribose) tran 43.9 67 0.0023 21.2 7.9 72 74-151 21-94 (291)
243 3si9_A DHDPS, dihydrodipicolin 43.6 80 0.0027 22.0 8.4 78 72-150 76-155 (315)
244 2zay_A Response regulator rece 43.6 46 0.0016 19.2 6.3 48 101-152 41-91 (147)
245 3vk5_A MOEO5; TIM barrel, tran 43.3 36 0.0012 23.6 4.2 46 104-150 58-104 (286)
246 1t57_A Conserved protein MTH16 43.2 37 0.0013 22.2 4.0 72 74-148 37-110 (206)
247 2ffh_A Protein (FFH); SRP54, s 43.0 96 0.0033 22.7 10.9 23 104-126 172-194 (425)
248 2m1z_A LMO0427 protein; homolo 43.0 18 0.0006 21.0 2.3 43 79-123 24-68 (106)
249 4f2d_A L-arabinose isomerase; 42.7 1.1E+02 0.0036 23.1 8.4 44 101-150 60-104 (500)
250 1q6o_A Humps, 3-keto-L-gulonat 42.6 65 0.0022 20.8 5.4 23 1-24 1-23 (216)
251 1cnz_A IPMDH, IMDH, protein (3 42.2 93 0.0032 22.3 9.3 30 13-44 169-198 (363)
252 3h5l_A Putative branched-chain 42.1 89 0.0031 22.1 9.9 46 75-120 179-227 (419)
253 3tak_A DHDPS, dihydrodipicolin 42.1 81 0.0028 21.6 8.5 78 72-150 55-134 (291)
254 2y3z_A 3-isopropylmalate dehyd 42.0 94 0.0032 22.3 9.3 29 14-44 163-191 (359)
255 3k9c_A Transcriptional regulat 41.9 75 0.0026 21.1 10.3 69 74-151 27-96 (289)
256 1qkk_A DCTD, C4-dicarboxylate 41.9 52 0.0018 19.3 5.6 64 80-151 19-83 (155)
257 3hzh_A Chemotaxis response reg 41.8 53 0.0018 19.4 8.4 67 79-152 51-120 (157)
258 3hs3_A Ribose operon repressor 41.7 73 0.0025 21.0 9.4 65 74-151 26-93 (277)
259 3l6u_A ABC-type sugar transpor 41.7 74 0.0025 21.0 10.3 71 74-150 24-96 (293)
260 1uuy_A CNX1, molybdopterin bio 41.7 61 0.0021 20.1 5.4 32 88-119 43-78 (167)
261 3gv0_A Transcriptional regulat 41.6 75 0.0026 21.1 8.7 70 74-151 26-97 (288)
262 3lqk_A Dipicolinate synthase s 41.6 32 0.0011 22.4 3.6 37 2-41 6-43 (201)
263 1jlj_A Gephyrin; globular alph 41.5 67 0.0023 20.5 5.6 40 80-119 39-85 (189)
264 3exr_A RMPD (hexulose-6-phosph 41.3 70 0.0024 20.9 5.4 32 3-41 5-36 (221)
265 2r48_A Phosphotransferase syst 41.2 28 0.00097 20.1 3.0 40 81-122 26-67 (106)
266 3kl4_A SRP54, signal recogniti 41.1 1E+02 0.0036 22.6 9.6 46 80-125 144-192 (433)
267 3k4h_A Putative transcriptiona 41.1 76 0.0026 21.0 7.8 69 74-150 29-99 (292)
268 2qxy_A Response regulator; reg 40.8 51 0.0017 18.9 7.5 66 78-152 18-84 (142)
269 3huu_A Transcription regulator 40.7 80 0.0027 21.1 6.9 70 74-151 43-114 (305)
270 3c3d_A 2-phospho-L-lactate tra 40.6 34 0.0012 24.0 3.8 48 99-151 172-221 (311)
271 1x7f_A Outer surface protein; 40.5 1E+02 0.0035 22.3 6.5 71 1-95 24-94 (385)
272 3bul_A Methionine synthase; tr 40.3 65 0.0022 24.8 5.6 67 80-149 118-185 (579)
273 1tqx_A D-ribulose-5-phosphate 40.2 78 0.0027 20.9 7.3 54 83-136 109-162 (227)
274 3cqj_A L-ribulose-5-phosphate 40.1 82 0.0028 21.1 6.8 79 17-113 107-188 (295)
275 3h1g_A Chemotaxis protein CHEY 40.0 50 0.0017 18.6 7.4 68 79-152 20-90 (129)
276 2hy5_B Intracellular sulfur ox 39.9 35 0.0012 20.5 3.5 40 2-44 4-47 (136)
277 4e0q_A COP9 signalosome comple 39.8 40 0.0014 20.5 3.7 47 103-149 74-120 (141)
278 3jvd_A Transcriptional regulat 39.7 89 0.0031 21.4 6.5 63 74-150 80-143 (333)
279 3sm9_A Mglur3, metabotropic gl 39.6 1.1E+02 0.0038 22.4 10.4 29 3-31 185-213 (479)
280 1x92_A APC5045, phosphoheptose 39.6 41 0.0014 21.2 4.0 40 3-45 113-152 (199)
281 2j48_A Two-component sensor ki 39.5 46 0.0016 18.0 8.3 65 79-151 16-83 (119)
282 3ngf_A AP endonuclease, family 39.5 81 0.0028 20.8 7.8 80 16-114 91-178 (269)
283 3dbi_A Sugar-binding transcrip 38.9 91 0.0031 21.3 9.3 70 74-150 79-150 (338)
284 2xzm_U Ribosomal protein L7AE 38.6 57 0.0019 19.4 4.2 16 104-119 59-74 (126)
285 3v7q_A Probable ribosomal prot 38.5 18 0.00063 20.5 1.9 20 102-121 25-44 (101)
286 3gxq_A Putative regulator of t 38.3 34 0.0012 16.2 2.6 25 91-115 12-37 (54)
287 2yva_A DNAA initiator-associat 38.3 44 0.0015 21.0 4.0 39 3-44 109-147 (196)
288 2qr3_A Two-component system re 38.2 56 0.0019 18.6 6.5 66 78-150 17-87 (140)
289 3rot_A ABC sugar transporter, 37.8 89 0.003 20.8 9.0 70 75-150 20-93 (297)
290 1xw8_A UPF0271 protein YBGL; N 37.7 82 0.0028 21.4 5.1 102 8-122 28-141 (252)
291 3v7e_A Ribosome-associated pro 37.6 7.4 0.00025 21.2 0.1 44 102-150 17-60 (82)
292 3t6k_A Response regulator rece 37.5 58 0.002 18.6 8.1 65 80-152 20-87 (136)
293 2b4a_A BH3024; flavodoxin-like 37.5 58 0.002 18.6 6.0 64 79-150 30-95 (138)
294 3gk0_A PNP synthase, pyridoxin 37.4 99 0.0034 21.3 5.8 43 74-119 141-183 (278)
295 2rgy_A Transcriptional regulat 37.4 89 0.003 20.7 8.3 68 75-150 25-97 (290)
296 3cvo_A Methyltransferase-like 37.1 40 0.0014 21.9 3.6 45 77-121 64-131 (202)
297 1fui_A L-fucose isomerase; ket 37.1 1.1E+02 0.0037 23.6 6.4 82 60-150 21-109 (591)
298 3kto_A Response regulator rece 37.0 57 0.002 18.6 4.1 68 78-152 20-89 (136)
299 2pbq_A Molybdenum cofactor bio 36.9 78 0.0027 19.9 5.4 33 86-119 39-75 (178)
300 1uf3_A Hypothetical protein TT 36.8 70 0.0024 20.2 4.9 8 115-122 67-74 (228)
301 3l23_A Sugar phosphate isomera 36.7 98 0.0034 21.0 6.7 59 15-94 105-165 (303)
302 3blx_A Isocitrate dehydrogenas 36.6 1.1E+02 0.0039 21.7 9.4 31 13-44 156-186 (349)
303 1i60_A IOLI protein; beta barr 36.6 89 0.003 20.5 8.6 80 16-113 82-166 (278)
304 1a05_A IPMDH, IMDH, 3-isopropy 36.5 1.2E+02 0.004 21.8 9.4 30 13-44 164-193 (358)
305 3snk_A Response regulator CHEY 36.5 60 0.002 18.4 6.2 66 79-152 29-96 (135)
306 3f6r_A Flavodoxin; FMN binding 36.3 57 0.0019 19.3 4.1 45 74-123 16-60 (148)
307 3b6i_A Flavoprotein WRBA; flav 36.3 72 0.0025 19.9 4.8 49 74-122 16-78 (198)
308 3f6c_A Positive transcription 36.0 60 0.002 18.3 8.5 66 79-151 16-82 (134)
309 2fzv_A Putative arsenical resi 36.0 1E+02 0.0036 21.1 6.8 47 74-122 75-133 (279)
310 3iv3_A Tagatose 1,6-diphosphat 36.0 1.1E+02 0.0039 21.6 12.6 83 69-151 141-253 (332)
311 3o74_A Fructose transport syst 35.9 89 0.0031 20.3 10.1 70 74-150 18-89 (272)
312 3ia7_A CALG4; glycosysltransfe 35.8 1.1E+02 0.0037 21.3 10.2 38 1-41 2-40 (402)
313 2q8u_A Exonuclease, putative; 35.7 37 0.0013 23.6 3.5 24 74-99 47-70 (336)
314 2d1p_B TUSC, hypothetical UPF0 35.5 20 0.00068 20.9 1.8 39 3-44 1-43 (119)
315 3jr2_A Hexulose-6-phosphate sy 35.5 89 0.0031 20.2 5.4 25 1-26 4-28 (218)
316 4fe7_A Xylose operon regulator 35.3 1.2E+02 0.0041 21.6 7.0 65 74-150 40-104 (412)
317 3tdn_A FLR symmetric alpha-bet 35.3 95 0.0032 20.4 5.7 48 102-149 38-85 (247)
318 2lpm_A Two-component response 35.3 68 0.0023 18.7 5.4 62 81-150 25-86 (123)
319 3u7r_A NADPH-dependent FMN red 35.3 87 0.003 19.9 5.2 40 2-44 1-43 (190)
320 3lvu_A ABC transporter, peripl 35.2 94 0.0032 20.4 6.8 46 74-122 142-187 (258)
321 3zxs_A Cryptochrome B, rscryb; 35.1 1.5E+02 0.005 22.5 8.9 74 70-152 62-140 (522)
322 3qxc_A Dethiobiotin synthetase 35.1 81 0.0028 21.0 4.9 40 111-151 130-169 (242)
323 3hdv_A Response regulator; PSI 35.0 63 0.0022 18.3 8.0 67 79-152 22-90 (136)
324 3eul_A Possible nitrate/nitrit 34.9 69 0.0023 18.7 8.4 48 101-152 50-98 (152)
325 2l8b_A Protein TRAI, DNA helic 34.8 78 0.0027 20.4 4.5 39 101-145 138-176 (189)
326 1wot_A Putative minimal nucleo 34.8 13 0.00046 20.8 0.9 63 81-150 17-79 (98)
327 3e61_A Putative transcriptiona 34.8 95 0.0033 20.3 9.0 67 74-150 24-93 (277)
328 2rjn_A Response regulator rece 34.7 70 0.0024 18.7 7.2 65 79-151 22-87 (154)
329 1o2d_A Alcohol dehydrogenase, 34.6 1.1E+02 0.0036 21.8 5.8 44 77-120 58-107 (371)
330 1vb5_A Translation initiation 34.4 1.1E+02 0.0037 20.9 11.3 59 85-151 157-219 (276)
331 2r4q_A Phosphotransferase syst 34.4 28 0.00097 20.1 2.3 39 82-122 27-67 (106)
332 3cg0_A Response regulator rece 34.3 66 0.0022 18.3 9.0 48 102-152 44-91 (140)
333 2isw_A Putative fructose-1,6-b 34.2 60 0.0021 22.9 4.3 69 81-149 10-81 (323)
334 3mcu_A Dipicolinate synthase, 34.1 47 0.0016 21.7 3.5 37 2-41 4-41 (207)
335 3sho_A Transcriptional regulat 33.8 62 0.0021 20.0 4.1 84 2-88 86-186 (187)
336 3cnb_A DNA-binding response re 33.8 67 0.0023 18.2 7.7 46 102-151 44-92 (143)
337 2pjk_A 178AA long hypothetical 33.8 89 0.0031 19.7 5.8 42 78-119 43-88 (178)
338 3f4w_A Putative hexulose 6 pho 33.6 92 0.0031 19.8 6.8 42 77-119 92-134 (211)
339 2ark_A Flavodoxin; FMN, struct 33.5 88 0.003 19.5 6.9 44 74-123 19-63 (188)
340 1a3w_A Pyruvate kinase; allost 33.4 86 0.0029 23.6 5.2 45 100-153 382-427 (500)
341 1h5y_A HISF; histidine biosynt 33.3 89 0.003 20.3 5.0 48 102-149 157-204 (253)
342 3nvt_A 3-deoxy-D-arabino-heptu 33.3 1E+02 0.0034 22.3 5.4 81 16-122 155-235 (385)
343 3iz5_f 60S ribosomal protein L 33.2 44 0.0015 19.4 3.0 44 101-149 31-74 (112)
344 2xhz_A KDSD, YRBH, arabinose 5 33.2 64 0.0022 19.9 4.1 39 3-44 96-134 (183)
345 2zki_A 199AA long hypothetical 32.9 72 0.0025 19.9 4.3 40 3-44 4-43 (199)
346 2i0f_A 6,7-dimethyl-8-ribityll 32.5 92 0.0031 19.4 7.3 77 71-147 25-114 (157)
347 3lkb_A Probable branched-chain 32.3 1.3E+02 0.0043 21.0 8.1 44 77-120 160-206 (392)
348 1tmy_A CHEY protein, TMY; chem 32.2 66 0.0023 17.7 8.6 64 81-151 19-83 (120)
349 1tk9_A Phosphoheptose isomeras 32.1 64 0.0022 20.0 4.0 39 3-44 110-148 (188)
350 3q9s_A DNA-binding response re 32.1 1.1E+02 0.0036 20.0 8.2 65 80-152 53-117 (249)
351 1zgz_A Torcad operon transcrip 32.1 67 0.0023 17.7 8.9 47 101-151 35-81 (122)
352 1sqs_A Conserved hypothetical 32.0 1.1E+02 0.0037 20.0 6.9 19 102-122 71-89 (242)
353 3ty4_A Probable homoisocitrate 32.0 1.4E+02 0.0049 21.4 8.1 27 14-41 162-200 (366)
354 3hcw_A Maltose operon transcri 31.8 1.1E+02 0.0039 20.3 8.0 70 74-151 28-99 (295)
355 3blx_B Isocitrate dehydrogenas 31.7 1.4E+02 0.0048 21.3 8.9 31 13-44 162-192 (354)
356 3r8w_A 3-isopropylmalate dehyd 31.7 1.5E+02 0.0052 21.7 9.4 26 14-41 207-232 (405)
357 1rvg_A Fructose-1,6-bisphospha 31.7 52 0.0018 23.0 3.6 64 85-149 13-78 (305)
358 3trj_A Phosphoheptose isomeras 31.5 90 0.0031 19.9 4.6 41 3-46 114-154 (201)
359 1v95_A Nuclear receptor coacti 31.5 87 0.003 18.8 6.9 45 77-121 24-70 (130)
360 1zmr_A Phosphoglycerate kinase 31.4 91 0.0031 22.6 4.8 47 105-151 44-94 (387)
361 3n9r_A Fructose-bisphosphate a 31.4 48 0.0017 23.2 3.4 66 84-149 12-80 (307)
362 1dos_A Aldolase class II; lyas 31.3 53 0.0018 23.5 3.7 71 79-149 19-107 (358)
363 3khd_A Pyruvate kinase; malari 31.0 1.2E+02 0.004 23.0 5.6 44 100-152 406-450 (520)
364 3dx5_A Uncharacterized protein 30.9 1.2E+02 0.004 20.1 7.6 79 16-112 82-163 (286)
365 2h0a_A TTHA0807, transcription 30.7 1.1E+02 0.0038 19.9 6.1 70 74-151 15-86 (276)
366 3of5_A Dethiobiotin synthetase 30.7 66 0.0023 21.1 3.9 22 2-23 3-24 (228)
367 2jba_A Phosphate regulon trans 30.6 72 0.0025 17.7 3.8 62 81-150 19-83 (127)
368 3uug_A Multiple sugar-binding 30.6 1.2E+02 0.0043 20.3 9.0 72 74-151 19-92 (330)
369 1gml_A T-complex protein 1 sub 30.6 75 0.0026 20.0 4.0 42 76-121 66-107 (178)
370 3on1_A BH2414 protein; structu 30.5 20 0.00069 20.3 1.2 19 103-121 25-43 (101)
371 3qi7_A Putative transcriptiona 30.4 1.5E+02 0.0052 21.3 7.8 94 5-121 14-120 (371)
372 3kws_A Putative sugar isomeras 30.4 1.2E+02 0.0041 20.1 8.0 84 16-114 102-191 (287)
373 1m3s_A Hypothetical protein YC 30.4 71 0.0024 19.8 4.0 39 3-44 79-117 (186)
374 1vlj_A NADH-dependent butanol 30.4 1.3E+02 0.0046 21.6 5.8 43 76-120 60-110 (407)
375 1mvl_A PPC decarboxylase athal 30.2 83 0.0029 20.5 4.2 35 2-40 18-52 (209)
376 3qxb_A Putative xylose isomera 30.2 1.3E+02 0.0044 20.4 7.9 82 17-111 113-200 (316)
377 3iz5_H 60S ribosomal protein L 30.1 47 0.0016 22.5 3.0 47 101-151 132-178 (258)
378 3hqn_D Pyruvate kinase, PK; TI 30.1 1.2E+02 0.0042 22.8 5.5 44 100-152 381-425 (499)
379 3izc_H 60S ribosomal protein R 29.9 97 0.0033 21.0 4.5 47 101-151 136-182 (256)
380 1jeo_A MJ1247, hypothetical pr 29.9 74 0.0025 19.6 3.9 39 3-44 82-120 (180)
381 3kjx_A Transcriptional regulat 29.7 1.4E+02 0.0046 20.5 8.7 68 74-149 84-153 (344)
382 3gg8_A Pyruvate kinase; malari 29.7 1.3E+02 0.0043 22.8 5.5 44 100-152 397-441 (511)
383 3ipc_A ABC transporter, substr 29.5 1.4E+02 0.0046 20.4 7.3 46 76-121 154-202 (356)
384 4e7p_A Response regulator; DNA 29.4 87 0.003 18.2 8.2 49 100-152 54-103 (150)
385 3o6p_A Peptide ABC transporter 29.3 1.1E+02 0.0039 19.5 7.2 46 74-122 112-159 (229)
386 2w6r_A Imidazole glycerol phos 29.3 1.3E+02 0.0043 20.0 5.5 46 103-148 34-79 (266)
387 3g1w_A Sugar ABC transporter; 29.3 1.3E+02 0.0043 20.0 8.8 72 74-151 20-94 (305)
388 1jbe_A Chemotaxis protein CHEY 29.2 78 0.0027 17.6 6.7 47 101-151 38-87 (128)
389 4drs_A Pyruvate kinase; glycol 29.0 1.3E+02 0.0045 22.8 5.6 44 100-152 412-456 (526)
390 3cpq_A 50S ribosomal protein L 29.0 58 0.002 18.7 3.0 44 101-149 26-69 (110)
391 3ln7_A Glutathione biosynthesi 28.9 46 0.0016 26.5 3.3 50 72-121 406-455 (757)
392 3heb_A Response regulator rece 28.9 89 0.003 18.1 7.5 70 78-152 18-98 (152)
393 1e0t_A Pyruvate kinase, PK; ph 28.9 1.2E+02 0.0041 22.7 5.3 44 100-152 358-402 (470)
394 3kke_A LACI family transcripti 28.8 1.3E+02 0.0045 20.0 9.6 69 74-151 31-102 (303)
395 4ebj_A Aminoglycoside nucleoti 28.8 12 0.00041 25.5 0.0 46 74-122 23-69 (272)
396 3zwt_A Dihydroorotate dehydrog 28.8 1.6E+02 0.0055 21.0 9.5 35 87-121 219-256 (367)
397 1o97_D Electron transferring f 28.7 1.5E+02 0.0052 20.7 9.0 83 6-122 3-97 (320)
398 3obe_A Sugar phosphate isomera 28.7 1.4E+02 0.0048 20.3 7.1 59 16-95 112-170 (305)
399 1to6_A Glycerate kinase; glyce 28.6 68 0.0023 23.1 3.8 57 92-150 256-316 (371)
400 3rqi_A Response regulator prot 28.6 1E+02 0.0035 18.8 7.0 65 80-152 23-88 (184)
401 3nkl_A UDP-D-quinovosamine 4-d 28.6 61 0.0021 18.9 3.3 19 4-23 5-23 (141)
402 1xhf_A DYE resistance, aerobic 28.6 79 0.0027 17.4 8.5 64 80-151 19-82 (123)
403 3p9x_A Phosphoribosylglycinami 28.5 1.3E+02 0.0043 19.7 5.8 71 77-149 16-87 (211)
404 2xdq_A Light-independent proto 28.4 28 0.00096 25.6 1.9 46 98-143 113-159 (460)
405 3qay_A Endolysin; amidase A/B 28.4 1.1E+02 0.0039 19.2 6.9 47 74-120 32-85 (180)
406 3glc_A Aldolase LSRF; TIM barr 28.4 1.5E+02 0.0051 20.5 9.6 67 73-149 156-229 (295)
407 3e3m_A Transcriptional regulat 28.3 1.5E+02 0.005 20.4 9.3 68 74-149 86-155 (355)
408 1tqj_A Ribulose-phosphate 3-ep 28.3 1.2E+02 0.0041 19.9 4.9 45 78-124 102-146 (230)
409 1m5w_A Pyridoxal phosphate bio 28.1 1.4E+02 0.0048 20.1 6.0 44 74-120 113-156 (243)
410 5nul_A Flavodoxin; electron tr 28.0 93 0.0032 18.0 8.0 43 74-122 13-55 (138)
411 3lop_A Substrate binding perip 28.0 1.5E+02 0.005 20.4 8.1 45 76-120 157-204 (364)
412 2xbl_A Phosphoheptose isomeras 27.9 1E+02 0.0034 19.2 4.4 40 3-45 116-155 (198)
413 2bw0_A 10-FTHFDH, 10-formyltet 27.9 1.6E+02 0.0054 20.7 9.2 41 82-122 66-109 (329)
414 2a9o_A Response regulator; ess 27.9 79 0.0027 17.2 8.6 63 81-151 18-80 (120)
415 3ksm_A ABC-type sugar transpor 27.7 1.3E+02 0.0044 19.5 8.2 70 75-150 17-91 (276)
416 3pam_A Transmembrane protein; 27.6 1.3E+02 0.0045 19.7 7.5 45 75-122 142-186 (259)
417 3hdg_A Uncharacterized protein 27.6 88 0.003 17.7 8.1 46 102-151 41-87 (137)
418 2ioy_A Periplasmic sugar-bindi 27.6 1.3E+02 0.0046 19.7 9.0 70 75-150 18-89 (283)
419 2ixd_A LMBE-related protein; h 27.6 1.4E+02 0.0047 19.8 10.8 23 100-122 85-107 (242)
420 1k66_A Phytochrome response re 27.6 91 0.0031 17.8 5.3 37 111-151 61-100 (149)
421 1ylq_A Putative nucleotidyltra 27.5 16 0.00055 20.4 0.4 41 77-121 4-46 (96)
422 2d1c_A Isocitrate dehydrogenas 27.5 2E+02 0.0068 21.7 9.1 30 14-44 165-194 (496)
423 2goy_A Adenosine phosphosulfat 27.4 1.4E+02 0.0049 20.1 5.5 35 4-45 55-89 (275)
424 1f76_A Dihydroorotate dehydrog 27.4 1.6E+02 0.0054 20.5 8.1 34 88-121 211-247 (336)
425 1di6_A MOGA, molybdenum cofact 27.2 1.2E+02 0.0042 19.4 4.6 39 81-119 29-73 (195)
426 1k68_A Phytochrome response re 27.2 88 0.003 17.5 6.2 68 78-151 16-93 (140)
427 1s8n_A Putative antiterminator 27.2 1.2E+02 0.0039 18.9 8.1 63 81-150 30-92 (205)
428 1xrs_B D-lysine 5,6-aminomutas 27.1 1E+02 0.0035 20.9 4.4 24 99-122 167-190 (262)
429 3nhm_A Response regulator; pro 27.1 88 0.003 17.5 7.8 47 101-151 36-85 (133)
430 3cvj_A Putative phosphoheptose 27.0 65 0.0022 21.1 3.4 37 3-42 108-144 (243)
431 3lua_A Response regulator rece 27.0 92 0.0032 17.7 5.3 66 80-152 20-90 (140)
432 3txv_A Probable tagatose 6-pho 26.9 1.1E+02 0.0037 22.8 4.7 48 99-146 32-86 (450)
433 3o3m_A Alpha subunit 2-hydroxy 26.9 50 0.0017 23.9 3.0 52 99-150 321-372 (408)
434 1c2y_A Protein (lumazine synth 26.8 1.2E+02 0.0041 18.9 6.3 78 71-148 26-113 (156)
435 3h5d_A DHDPS, dihydrodipicolin 26.8 1.6E+02 0.0055 20.4 8.1 76 72-150 61-141 (311)
436 1w41_A 50S ribosomal protein L 26.7 65 0.0022 18.1 2.9 20 102-121 22-41 (101)
437 1srr_A SPO0F, sporulation resp 26.6 87 0.003 17.3 7.6 64 80-151 19-83 (124)
438 1of8_A Phospho-2-dehydro-3-deo 26.6 1.7E+02 0.0057 21.2 5.5 64 72-150 136-202 (370)
439 2owr_A UDG, uracil-DNA glycosy 26.4 95 0.0032 20.5 4.0 65 74-143 138-206 (218)
440 1nmo_A Hypothetical protein YB 26.3 45 0.0016 22.3 2.5 55 96-151 171-243 (247)
441 3dz1_A Dihydrodipicolinate syn 26.3 1.6E+02 0.0056 20.3 7.3 76 72-150 62-141 (313)
442 1mb3_A Cell division response 26.3 88 0.003 17.2 8.1 64 80-151 17-83 (124)
443 3jte_A Response regulator rece 26.3 96 0.0033 17.7 9.1 66 80-152 19-86 (143)
444 2ale_A SNU13, NHP2/L7AE family 26.2 1.1E+02 0.0038 18.3 4.1 17 104-120 40-56 (134)
445 1vim_A Hypothetical protein AF 26.1 80 0.0027 20.0 3.6 41 3-46 89-129 (200)
446 3p52_A NH(3)-dependent NAD(+) 26.1 1.5E+02 0.0051 19.8 6.9 38 2-44 25-62 (249)
447 3s5o_A 4-hydroxy-2-oxoglutarat 25.8 1.7E+02 0.0057 20.2 7.5 59 91-150 84-149 (307)
448 3nq4_A 6,7-dimethyl-8-ribityll 25.8 1.2E+02 0.0043 18.8 7.4 77 71-147 25-113 (156)
449 3tqk_A Phospho-2-dehydro-3-deo 25.8 1.1E+02 0.0039 21.7 4.5 130 4-150 49-184 (346)
450 2y88_A Phosphoribosyl isomeras 25.7 1.3E+02 0.0045 19.5 4.8 47 102-149 152-199 (244)
451 8abp_A L-arabinose-binding pro 25.7 1.5E+02 0.0051 19.6 7.6 69 75-150 19-89 (306)
452 2avd_A Catechol-O-methyltransf 25.7 1.1E+02 0.0039 19.4 4.4 40 82-121 112-154 (229)
453 3o6c_A PNP synthase, pyridoxin 25.6 1.6E+02 0.0055 20.0 5.5 42 75-119 111-152 (260)
454 3r3h_A O-methyltransferase, SA 25.6 1.1E+02 0.0037 20.1 4.3 35 87-121 108-145 (242)
455 3n53_A Response regulator rece 25.4 1E+02 0.0034 17.5 7.5 47 101-151 35-84 (140)
456 2qzj_A Two-component response 25.4 1E+02 0.0034 17.6 8.1 65 79-151 19-83 (136)
457 2uxq_A Isocitrate dehydrogenas 25.3 2E+02 0.0068 21.0 8.1 30 13-44 183-212 (402)
458 3gr4_A Pyruvate kinase isozyme 25.3 1.4E+02 0.0048 22.8 5.2 44 100-152 431-475 (550)
459 2fyw_A Conserved hypothetical 25.2 72 0.0025 21.6 3.4 30 91-120 38-67 (267)
460 3t8y_A CHEB, chemotaxis respon 25.1 1.1E+02 0.0039 18.1 8.2 46 102-151 61-106 (164)
461 2z6i_A Trans-2-enoyl-ACP reduc 25.0 1.8E+02 0.006 20.2 5.6 61 85-149 107-168 (332)
462 3tqq_A Methionyl-tRNA formyltr 24.9 92 0.0032 21.7 4.0 41 79-122 49-90 (314)
463 2rbg_A Putative uncharacterize 24.8 1.1E+02 0.0039 18.0 9.3 92 1-120 1-94 (126)
464 3o21_A Glutamate receptor 3; p 24.8 1.8E+02 0.0063 20.4 8.4 45 77-121 146-194 (389)
465 2pju_A Propionate catabolism o 24.7 1.5E+02 0.0053 19.5 8.6 60 80-151 28-90 (225)
466 3duw_A OMT, O-methyltransferas 24.7 1.4E+02 0.0047 18.9 5.4 44 78-121 97-142 (223)
467 3gyb_A Transcriptional regulat 24.6 1.5E+02 0.0052 19.3 6.9 66 74-151 21-87 (280)
468 1ii7_A MRE11 nuclease; RAD50, 24.5 1.5E+02 0.0051 20.5 5.0 25 73-99 25-49 (333)
469 4fey_A Phosphoglycerate kinase 24.5 94 0.0032 22.6 3.9 47 105-151 47-97 (395)
470 1sbp_A Sulfate-binding protein 24.5 1.6E+02 0.0055 19.6 7.0 46 75-120 19-65 (310)
471 1zgh_A Methionyl-tRNA formyltr 24.4 1.7E+02 0.0058 19.8 5.2 25 98-122 63-87 (260)
472 3vkj_A Isopentenyl-diphosphate 24.4 1.6E+02 0.0055 21.0 5.2 46 78-123 177-222 (368)
473 3q0i_A Methionyl-tRNA formyltr 24.3 88 0.003 21.9 3.8 41 79-122 54-95 (318)
474 2ha9_A UPF0210 protein SP0239; 24.3 2.2E+02 0.0075 21.1 7.7 80 59-138 39-138 (446)
475 2e4u_A Metabotropic glutamate 24.3 2.2E+02 0.0076 21.2 10.6 37 2-40 185-221 (555)
476 2pln_A HP1043, response regula 24.2 1E+02 0.0036 17.4 7.6 60 80-151 34-94 (137)
477 1k77_A EC1530, hypothetical pr 24.2 1.5E+02 0.0051 19.2 7.8 80 16-113 83-170 (260)
478 2i2w_A Phosphoheptose isomeras 24.1 1E+02 0.0035 19.7 3.9 40 3-45 131-170 (212)
479 2o95_A 26S proteasome non-ATPa 24.1 1.2E+02 0.004 19.1 4.1 11 35-45 48-58 (187)
480 3d7n_A Flavodoxin, WRBA-like p 23.9 66 0.0022 20.2 2.9 18 103-122 47-64 (193)
481 3tr6_A O-methyltransferase; ce 23.9 1.2E+02 0.0041 19.2 4.2 44 77-120 102-148 (225)
482 3fkr_A L-2-keto-3-deoxyarabona 23.8 1.8E+02 0.0063 20.0 8.2 76 73-150 63-144 (309)
483 2e28_A Pyruvate kinase, PK; al 23.8 1.9E+02 0.0065 22.3 5.7 44 100-152 361-405 (587)
484 3t05_A Pyruvate kinase, PK; te 23.8 1.7E+02 0.0057 22.8 5.3 44 100-152 380-424 (606)
485 3tb6_A Arabinose metabolism tr 23.7 1.6E+02 0.0055 19.3 10.3 74 74-150 31-106 (298)
486 4dik_A Flavoprotein; TM0755, e 23.7 2.1E+02 0.0072 20.7 11.9 82 15-124 247-331 (410)
487 3nbk_A Phosphopantetheine aden 23.6 1.5E+02 0.005 18.8 7.8 26 103-128 92-117 (177)
488 2au3_A DNA primase; zinc ribbo 23.6 2.1E+02 0.0072 20.6 6.2 35 4-40 288-322 (407)
489 1p6q_A CHEY2; chemotaxis, sign 23.5 1E+02 0.0035 17.1 5.9 47 101-151 40-89 (129)
490 2qfy_A Isocitrate dehydrogenas 23.5 2.2E+02 0.0076 20.9 8.8 29 14-44 203-231 (427)
491 1n8f_A DAHP synthetase; (beta/ 23.5 2.1E+02 0.007 20.5 5.5 64 75-150 124-187 (350)
492 3cu5_A Two component transcrip 23.5 1.1E+02 0.0039 17.5 4.5 19 103-121 40-58 (141)
493 4f2d_A L-arabinose isomerase; 23.4 2.3E+02 0.0077 21.3 6.0 36 86-121 444-479 (500)
494 3jyw_G 60S ribosomal protein L 23.3 69 0.0024 18.7 2.6 16 105-120 61-76 (113)
495 3cbg_A O-methyltransferase; cy 23.2 1.1E+02 0.0038 19.7 4.0 40 82-121 115-157 (232)
496 3bbl_A Regulatory protein of L 23.2 1.7E+02 0.0057 19.3 8.6 68 75-150 25-94 (287)
497 3av0_A DNA double-strand break 23.1 77 0.0026 22.6 3.4 24 74-99 46-69 (386)
498 3g3k_A Glutamate receptor, ion 23.1 1.3E+02 0.0046 19.2 4.4 34 87-120 47-90 (259)
499 3ouz_A Biotin carboxylase; str 23.0 54 0.0019 23.8 2.6 43 81-123 124-167 (446)
500 3bzc_A TEX; helix-turn-helix, 23.0 53 0.0018 26.3 2.6 46 102-151 373-421 (785)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=100.00 E-value=4.8e-32 Score=172.13 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=125.8
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
|+|++||||+|+++.+..++++|+.+|+..+ ++|+++||.+...... ...........+..++..++.++++
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~ 74 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQ--ANLTALYVVDDSAYHT------PALDPVLSELLDAEAAHAKDAMRQR 74 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEECCCCCC------GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccc------cccccccHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999977 9999999988754321 0111144556677778888999999
Q ss_pred HHHHHhcCC-eEEEEEecCChhhHHHH-HHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 81 KEICAKHGV-VAETMTEMGDPKNVICE-AAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 81 ~~~~~~~~~-~~~~~v~~g~~~~~i~~-~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
.+.+...|+ ++++.+..|++.+.|++ ++++.++||||||+++++.+.++++||++++++++++||||+||
T Consensus 75 ~~~~~~~g~~~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 75 QQFVATTSAPNLKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp HHHHTTSSCCCCEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHhcCCcceEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 999998899 89999999999999999 99999999999999999999999999999999999999999997
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.98 E-value=1.3e-30 Score=168.29 Aligned_cols=150 Identities=20% Similarity=0.296 Sum_probs=122.7
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCC-----chhhcc-cC--CCCCchHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTE-----FIYVQA-SM--FGAAPPDLLMSIQENQKKAA 73 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~-----~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~ 73 (154)
++++||||+|+++.+..++++|+.+|+..+ ++|+++||.+.. .....+ .. +........+...+..++..
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEA 81 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcC--CeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHH
Confidence 589999999999999999999999999987 999999998754 110000 00 00000011234556667778
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPV 153 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~ 153 (154)
++.++++.+.+...|+++++.+..|++.++|++++++.++||||||+++++.+.++++||++++++++++|||++||++.
T Consensus 82 ~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~~~ 161 (162)
T 1mjh_A 82 KNKMENIKKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRKN 161 (162)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeCCC
Confidence 88899998888888999999999999999999999999999999999999999999999999999999999999998764
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.5e-30 Score=168.18 Aligned_cols=150 Identities=20% Similarity=0.207 Sum_probs=118.2
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCC--CCc-hHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFG--AAP-PDLLMSIQENQKKAALALLG 78 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~l~ 78 (154)
++++||||+|+++.+..++++|+.+|+..+ ++|+++||.+..........+. ... ....+...+..++..++.++
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 81 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEV--GEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQ 81 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCC--SEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999987 9999999987653321100010 000 00001223445566777888
Q ss_pred HHHHHHHhcCCeEEE--EEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCC
Q 031713 79 RAKEICAKHGVVAET--MTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPV 153 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~--~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~ 153 (154)
++.+.+...|+++++ .+..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++||||+||+..
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~~ 158 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVD 158 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCCC
T ss_pred HHHHHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccCC
Confidence 888888778999888 888999999999999999999999999999999999999999999999999999998764
No 4
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.97 E-value=5.3e-31 Score=167.41 Aligned_cols=144 Identities=25% Similarity=0.298 Sum_probs=119.9
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
||++||||+|+|+.+..++++|+.+|+..+ ++|+++||.+.......... .......+...+..++..++.++++.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTG--AELYILCVFKHHSLLEASLS--MARPEQLDIPDDALKDYATEIAVQAK 76 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHC--CEEEEEEEECCHHHHHHTBS--SCCCGGGCCCTTHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccc--ccChhhhhhHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999987 99999999987652211001 11111112223445567778888888
Q ss_pred HHHHhcCCeE---EEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 82 EICAKHGVVA---ETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 82 ~~~~~~~~~~---~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+.+...|+++ ++.+..|++.++|++++++.++||||||+++++.+.++++||++++++++++|||++|
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHhcCCCccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 8888889888 9999999999999999999999999999999999999999999999999999999986
No 5
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.97 E-value=2.3e-30 Score=166.14 Aligned_cols=139 Identities=22% Similarity=0.319 Sum_probs=119.7
Q ss_pred CCCcEEEEEec--CCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAID--ESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLG 78 (154)
Q Consensus 1 m~~~~iLv~vd--~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (154)
|+|++||||+| +++.+..++++|..+|+..+ ++|+++||.+...... +.. ......+..++..++.++
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~----~~~----~~~~~~~~~~~~~~~~l~ 82 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYD--VPLGICSVLESEDINI----FDS----LTPSKIQAKRKHVEDVVA 82 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHT--CCEEEEEEECCCCTTC----CCS----SHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEeCCCccc----ccc----CCHHHHHHHHHHHHHHHH
Confidence 58999999999 99999999999999999977 9999999998764321 111 123455666777888899
Q ss_pred HHHHHHHhcCC-eEEEEEec-CChhhHHHHH-HHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 79 RAKEICAKHGV-VAETMTEM-GDPKNVICEA-AEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 79 ~~~~~~~~~~~-~~~~~v~~-g~~~~~i~~~-a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
++.+.+...|+ .+++.+.. |++.++|+++ +++.++||||||+++++.+. .++||++++++++++|||++||
T Consensus 83 ~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 83 EYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp HHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEEeC
Confidence 99888888899 49999999 9999999999 99999999999999999887 5899999999999999999996
No 6
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.97 E-value=6e-30 Score=161.01 Aligned_cols=136 Identities=25% Similarity=0.379 Sum_probs=118.4
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHc-ccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHH-HHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENL-GDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQK-KAALALLGRA 80 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la-~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 80 (154)
|++||||+|+++.+..++++|+.+| +..+ ++|+++||.+...... ..........+..+ +..++.++++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~ 71 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDAD--CTLTLIHVKPEFMLYG-------EAVLAAYDEIEMKEEEKAKLLTQKF 71 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTT--EEEEEEEEECCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCC--CEEEEEEEecCCCccc-------ccccCcHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999 8877 9999999998764321 01112233445555 7888899999
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
.+.+...|+++++.+..|++.++|.++++ ++||||||+++++.+.+++ ||++++++++++||||+||
T Consensus 72 ~~~~~~~g~~~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 72 STFFTEKGINPFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHTTTCCCEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHCCCCeEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 99999899999999999999999999999 9999999999999999999 9999999999999999997
No 7
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.97 E-value=4.3e-30 Score=164.92 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=115.0
Q ss_pred CCCcEEEEEecC-CchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDE-SECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGR 79 (154)
Q Consensus 1 m~~~~iLv~vd~-~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (154)
|+|++||||+|+ ++.+..++++|+.+|+..+ ++|+++||.+...... +...+..++.+++
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~--a~l~llhV~~~~~~~~-----------------~~~~~~~~~~l~~ 82 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRG--VPVYVVHSLPGGGRTK-----------------DEDIIEAKETLSW 82 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHT--CCEEEEEEECCSTTSC-----------------HHHHHHHHHHHHH
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEEcCCCccc-----------------HHHHHHHHHHHHH
Confidence 899999999999 9999999999999999977 8999999988643211 2344567778888
Q ss_pred HHHHHHhcCCeEEEE--EecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 80 AKEICAKHGVVAETM--TEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~--v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+.+.+.+.|+++++. +..|++.++|++++++.++||||||+++++.+.++++||++++++++++||||+|+
T Consensus 83 ~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 83 AVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp HHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 888888888876654 55699999999999999999999999999999999999999999999999999986
No 8
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.97 E-value=8.2e-30 Score=162.50 Aligned_cols=146 Identities=22% Similarity=0.232 Sum_probs=102.9
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
|++++||||+|+++.+..++++|+.+|+..+ ++|+++||.+.........+... ....+...+...+..++.++++
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~ 79 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIG--ARLSLIHVLDNIPMPDTPYGTAI--PLDTETTYDAMLDVEKQKLSQI 79 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEC--------CTTCC--CSSSCCCHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEEcCcccccccccccc--CcCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999977 99999999887543210001000 0000112233344455555555
Q ss_pred HHHHHhcCCe-EEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCCC
Q 031713 81 KEICAKHGVV-AETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPVE 154 (154)
Q Consensus 81 ~~~~~~~~~~-~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~~ 154 (154)
.+.+ |++ +++.+..|++.++|++++++.++||||||+++++.+. +++||++++++++++|||++||++.+
T Consensus 80 ~~~~---~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~~d 150 (150)
T 3tnj_A 80 GNTL---GIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLRDD 150 (150)
T ss_dssp HHHH---TCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECCC-
T ss_pred HHHc---CCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCCCC
Confidence 4433 666 5788889999999999999999999999999999999 99999999999999999999998764
No 9
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.97 E-value=5.3e-30 Score=165.73 Aligned_cols=143 Identities=27% Similarity=0.251 Sum_probs=113.7
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEE--EeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIF--TARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLG 78 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 78 (154)
+++++||||+|+|+.+..++++|+.+|+ .+ ++|+++ ||.+...... +.... .+.+.+..++..++.++
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~l~ 84 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARA---ADILK----DESYKVTGTAPIYEILH 84 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC---------------------------CCTHHHHHH
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCccccc---ccccc----cHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999 88 999999 8876543201 00000 11223334556778888
Q ss_pred HHHHHHHhcCCe-EEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCC
Q 031713 79 RAKEICAKHGVV-AETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPV 153 (154)
Q Consensus 79 ~~~~~~~~~~~~-~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~ 153 (154)
++.+.+...|++ +++.+..|++.++|++++++.++||||||+++++.+.++++||++++|+++++|||++||++.
T Consensus 85 ~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~~~ 160 (163)
T 1tq8_A 85 DAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTE 160 (163)
T ss_dssp HHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC-
T ss_pred HHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeCCC
Confidence 888888888998 999999999999999999999999999999999999999999999999999999999998764
No 10
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.97 E-value=3.1e-29 Score=163.71 Aligned_cols=149 Identities=29% Similarity=0.532 Sum_probs=108.9
Q ss_pred CCcEEEEEecCCc---------hHHHHHHHHHHHccc---CCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESE---------CRHYALQWALENLGD---AISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQ 69 (154)
Q Consensus 2 ~~~~iLv~vd~~~---------~~~~~l~~a~~la~~---~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (154)
.+++||||+|+++ .+..++++|+.++.. .+ ++|+++||.+...................+.+.+..
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSD--FKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSN 81 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTS--EEEEEEEEEC----------CCCCSHHHHHHHTTSH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCC--CEEEEEEEeecccccccccccccCCHHHHHHHHHHH
Confidence 5899999999999 999999999998743 45 899999998654321100000011222233333444
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 70 KKAALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
.+..++.++++.+.+...|+++++.+..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++||||+|
T Consensus 82 ~~~~~~~l~~~~~~~~~~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv 161 (175)
T 2gm3_A 82 KAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTI 161 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEE
Confidence 55667788888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 031713 150 RKP 152 (154)
Q Consensus 150 ~~~ 152 (154)
|+.
T Consensus 162 ~~~ 164 (175)
T 2gm3_A 162 KRN 164 (175)
T ss_dssp ECC
T ss_pred cCC
Confidence 865
No 11
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.97 E-value=1.4e-29 Score=159.27 Aligned_cols=136 Identities=29% Similarity=0.391 Sum_probs=108.0
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
||++||||+|+++.+..++++|..+|+..+ ++++++||.++..... ... ..+...+..++..++.++++.
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~l~~~~ 70 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHG--ARLIVVHAYEPVPDYL-----GEP---FFEEALRRRLERAEGVLEEAR 70 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEECC----------------------CHHHHHHHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCCCccc-----ccc---chHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999977 8999999987532111 000 011222333445555666554
Q ss_pred HHHHhcCC-eEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 82 EICAKHGV-VAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 82 ~~~~~~~~-~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+. .|+ ++++.+..|++.++|++++++.++||||||+++++.+.++++||++++++++++|||++||
T Consensus 71 ~~---~g~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 71 AL---TGVPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HH---HCCCGGGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HH---cCCCccEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 43 578 7888888999999999999999999999999999999999999999999999999999997
No 12
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.95 E-value=2.9e-27 Score=167.39 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=123.8
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
|+|++||||+|+|+.+..++++|+.+|+..+ ++|+++||.+...... .........+...+...+.+++.++++
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDM----TTLLSPDERNAMRKGVINQKTAWIKQQ 78 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGC----TTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhh----ccccChhhHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999988 9999999987643221 111233444555566667778888888
Q ss_pred HHHHHhcCCeEEEEEe-cCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 81 KEICAKHGVVAETMTE-MGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~-~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+.+...|+++++.+. .|++.+.|.+++++.++||||||+++++.+.++++|+++++++++++||||+||+.
T Consensus 79 ~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 79 ARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred HHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 8888888999999999 79999999999999999999999999999999999999999999999999999865
No 13
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.95 E-value=3.1e-28 Score=153.96 Aligned_cols=138 Identities=25% Similarity=0.284 Sum_probs=105.6
Q ss_pred CcEEEEEecCCch--HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESEC--RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 3 ~~~iLv~vd~~~~--~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
.++||||+|+++. +..++++|+.+|+..+ ++|+++||.+...... ......... .+..++..++.++.+
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~l 71 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDD--AEVHFLTVIPSLPYYA---SLGMAYTAE----LPGMDELREGSETQL 71 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHT--CEEEEEEEECC-----------------------CHHHHHHHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcC--CeEEEEEEecCCcccc---cccccccch----hhhHHHHHHHHHHHH
Confidence 3799999999999 9999999999999977 9999999998754321 111000000 112233344555556
Q ss_pred HHHHHhcCC---eEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 81 KEICAKHGV---VAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 81 ~~~~~~~~~---~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
.+.+++.++ .+++.+..|++.++|.+++++.++||||||+++ +.+.++++||++++++++++||||+||
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 666666554 478889999999999999999999999999995 889999999999999999999999997
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.95 E-value=2.3e-27 Score=149.66 Aligned_cols=140 Identities=21% Similarity=0.155 Sum_probs=105.2
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
||++||||+|+++.+..++++|..+|+..+ ++|+++||.+...... ........+...+...+..++.++++.
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHD--AKLSIIHVDVNFSDLY-----TGLIDVNMSSMQDRISTETQKALLDLA 73 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEECCGGGC-----CCCEEHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcC--CEEEEEEEecCchhhh-----ccccccchHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999977 8999999985422111 001111111122222233444444443
Q ss_pred HHHHhcCCeE-EEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCCC
Q 031713 82 EICAKHGVVA-ETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPVE 154 (154)
Q Consensus 82 ~~~~~~~~~~-~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~~ 154 (154)
+..|+++ ++.+..|++.+.|++++++.++||||||++ ++.+.+ +||++++++++++|||++||++.+
T Consensus 74 ---~~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~~ 141 (141)
T 1jmv_A 74 ---ESVDYPISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRDE 141 (141)
T ss_dssp ---HHSSSCCCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC-
T ss_pred ---HHcCCCceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCCC
Confidence 3457775 677888999999999999999999999999 888777 489999999999999999998753
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.94 E-value=2.3e-27 Score=166.28 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=120.0
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
|||++||||+|+++.+..++++|+.+|+..+ ++|+++||.+...... . . .....+...+..++..++.++++
T Consensus 20 ~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~---~-~--~~~~~~~~~~~~~~~~~~~l~~~ 91 (294)
T 3loq_A 20 FQSNAMLLPTDLSENSFKVLEYLGDFKKVGV--EEIGVLFVINLTKLST---V-S--GGIDIDHYIDEMSEKAEEVLPEV 91 (294)
T ss_dssp STTCEEEEECCSCTGGGGGGGGHHHHHHTTC--CEEEEECCEECTTC-----------CCCTTHHHHHHHHHHHHHHHHH
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCccccc---c-c--ccccHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999987 9999999988754321 0 0 01112233445566778888889
Q ss_pred HHHHHhcCCeEEE-EEe-cCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCC
Q 031713 81 KEICAKHGVVAET-MTE-MGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPV 153 (154)
Q Consensus 81 ~~~~~~~~~~~~~-~v~-~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~ 153 (154)
.+.+...|+++++ .+. .|++.++| ++++.++|+||||+++++.+.++++|+++++++++++|||++||+..
T Consensus 92 ~~~~~~~g~~~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~ 164 (294)
T 3loq_A 92 AQKIEAAGIKAEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDM 164 (294)
T ss_dssp HHHHHHTTCEEEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCT
T ss_pred HHHHHHcCCCcceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCcc
Confidence 8888888999998 777 89999999 99999999999999999999999999999999999999999999763
No 16
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.93 E-value=1.1e-25 Score=158.74 Aligned_cols=141 Identities=20% Similarity=0.300 Sum_probs=115.8
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
+++++||||+|+++.+..++++|+.+|+..+ ++|+++||.++..... ....... ...+...+..++.++++
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~---~~~~~~~----~~~~~~~~~~~~~l~~~ 87 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRK--IPLTLVHAVSPEVATW---LEVPLPP----GVLRWQQDHGRHLIDDA 87 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHT--CCEEEEEECCCCCCCT---TCCCCCH----HHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcC--CcEEEEEEecCccccc---ccCCCCc----hhhHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999987 8999999987432111 0011111 23334455667777777
Q ss_pred HHHHHhc-----CCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 81 KEICAKH-----GVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 81 ~~~~~~~-----~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+.+.+. |+++++.+..|++.+.|+++++ ++||||||+++++.+.++++||++++++++++|||++||..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 162 (309)
T 3cis_A 88 LKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDE 162 (309)
T ss_dssp HHHHHHHCSSSCCSCEEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTT
T ss_pred HHHHHHhcccCCCceEEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCC
Confidence 7777765 8999999999999999999997 99999999999999999999999999999999999999865
No 17
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.93 E-value=7.6e-26 Score=156.62 Aligned_cols=146 Identities=21% Similarity=0.221 Sum_probs=116.7
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcc-cCCCCCc---hHHHHHHHHHHHHHHHHHHHH
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQA-SMFGAAP---PDLLMSIQENQKKAALALLGR 79 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~l~~ 79 (154)
++||||+|+|+.+..++++|..+|+..+ ++++++||.+.......+ .+..... .+..+...+...+..++.+++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLS--APLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLER 78 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHT--CCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhC--CcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999987 899999998754321100 0111000 011112244556677888888
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCC-CcccccccchhHHHhhcCCCcEEEEcCCC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRG-PIQRAFLGSVSNYCVHNAKCPVLVVRKPV 153 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~-~~~~~~~gs~~~~l~~~~~~pvliv~~~~ 153 (154)
+.+.+...|+++++.+..|++.+.|.++ +.++||||||+++++ .+.++++||++++++++++|||++||+..
T Consensus 79 ~~~~~~~~g~~~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 79 VRQSALAAGVAVEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHHHHTTCCEEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC
T ss_pred HHHHHHhCCCCeEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC
Confidence 8888888899999999999999999999 779999999999998 89999999999999999999999999753
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.93 E-value=2.4e-25 Score=139.92 Aligned_cols=132 Identities=14% Similarity=0.099 Sum_probs=102.9
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEec-cC-Cchh-hcccCCCCCchHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTAR-PT-EFIY-VQASMFGAAPPDLLMSIQENQKKAALALL 77 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 77 (154)
.+|++||||+|+++.+..++++|..+|+..+ ++|+++||. +. +... ....++.. .. ...+...+..++.+
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~l 74 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLG--AELDILAVLEDVYNLERANVTFGLPF-PP----EIKEESKKRIERRL 74 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTC--CEEEEEEECHHHHHHHHHHHHHCCCC-CT----HHHHHHHHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcC--CeEEEEEEecccccccccccccCCCC-Ch----HHHHHHHHHHHHHH
Confidence 4789999999999999999999999999977 999999998 63 1111 00001111 11 23344455566677
Q ss_pred HHHHHH--HHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 78 GRAKEI--CAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 78 ~~~~~~--~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+++ +. +...| ++++.+..|++.+.|++++++.++||||||++++ |++++++++++|||++||
T Consensus 75 ~~~-~~~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 75 REV-WEKLTGSTE-IPGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHH-HHHHHSCCC-CCCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEECC
T ss_pred HHH-HHHhhccCC-cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEeeC
Confidence 777 66 34557 7888888999999999999999999999999865 899999999999999986
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.93 E-value=9.1e-25 Score=152.89 Aligned_cols=137 Identities=18% Similarity=0.271 Sum_probs=106.9
Q ss_pred CCcEEEEEecCCch-------HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESEC-------RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAAL 74 (154)
Q Consensus 2 ~~~~iLv~vd~~~~-------~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (154)
.+++||||+|+++. +..++++|..+|+..+ ++++++||.+...... . .... ...+..++..+
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~---~----~~~~--~~~~~~~~~~~ 201 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK--ATLHVISAHPSPMLSS---A----DPTF--QLSETIEARYR 201 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT--CEEEEEEEEC----------------CH--HHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcC--CeEEEEEEecCccccc---c----Cchh--HHHHHHHHHHH
Confidence 47899999999998 9999999999999987 9999999998754322 0 0110 22233333444
Q ss_pred HHHHHHHHHHHhcCCe-EEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 75 ALLGRAKEICAKHGVV-AETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~-~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
+.++++. ++.|++ ++..+..|++.++|.+++++.++||||||+++++.+.++++||++++++++++||||+||+.
T Consensus 202 ~~l~~~~---~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 202 EACRTFQ---AEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp HHHHHHH---HHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCH
T ss_pred HHHHHHH---HHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECCC
Confidence 4444443 344774 66778889999999999999999999999999999999999999999999999999999864
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.93 E-value=7.2e-25 Score=153.40 Aligned_cols=123 Identities=19% Similarity=0.216 Sum_probs=108.7
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
+|++||||+|+++.+..++++|+.+|+..+ ++|+++|+.++ .. .++.++++.
T Consensus 6 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~--~~------------------------~~~~l~~~~ 57 (290)
T 3mt0_A 6 AIRSILVVIEPDQLEGLALKRAQLIAGVTQ--SHLHLLVCEKR--RD------------------------HSAALNDLA 57 (290)
T ss_dssp TCCEEEEECCSSCSCCHHHHHHHHHHHHHC--CEEEEEEECSS--SC------------------------CHHHHHHHH
T ss_pred hhceEEEEeCCCccchHHHHHHHHHHHhcC--CeEEEEEeeCc--HH------------------------HHHHHHHHH
Confidence 689999999999999999999999999987 89999999873 11 134455566
Q ss_pred HHHHhcCCeEEEEEec-CChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 82 EICAKHGVVAETMTEM-GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~-g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
+.+...|+++++.+.. |++.+.|.+++++.++||||||+++++.+.++++|+++++++++++||||++|+.
T Consensus 58 ~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 58 QELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 6666789999999884 7899999999999999999999999999999999999999999999999999943
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.92 E-value=3.9e-24 Score=149.87 Aligned_cols=124 Identities=23% Similarity=0.289 Sum_probs=111.8
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
.+++||||+|+++.+..++++|..+|+..+ ++|+++||.+... .++.++++.
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~--------------------------~~~~l~~~~ 220 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTG--GELHIIHVSEDGD--------------------------KTADLRVME 220 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEECSSSC--------------------------CHHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcC--CEEEEEEEccCch--------------------------HHHHHHHHH
Confidence 478999999999999999999999999877 8999999988742 134456666
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPV 153 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~ 153 (154)
+.+...|+++++.+..|++.++|.+++++.++||||||+++++.+.++++||++++++++++||||+||++.
T Consensus 221 ~~l~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 221 EVIGAEGIEVHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp HHHHHTTCCEEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCT
T ss_pred HHHHHcCCcEEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCC
Confidence 677778999999999999999999999999999999999999999999999999999999999999998765
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.91 E-value=1.4e-23 Score=147.97 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=108.2
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
.+++||||+|+++.+..++++|..+|+..+ ++|+++||.+..... ...... .+ ...+..++.++++.
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~----~~~~~~---~~----~~~~~~~~~l~~~~ 236 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRN--VDLVALHAWSDVDVS----EWPGID---WP----ATQSMAEQVLAERL 236 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTT--CCEEEEEESCSSCCT----TCSSCC---HH----HHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcC--CEEEEEEEeeccccc----CCCccc---HH----HHHHHHHHHHHHHH
Confidence 368999999999999999999999999977 899999998764321 001111 11 12233344455554
Q ss_pred HHHHh--cCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 82 EICAK--HGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 82 ~~~~~--~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
..+.+ .|+.++..+..|++.++|+++++ ++||||||+++++.+.++++||++++|+++++|||+++|++
T Consensus 237 ~~~~~~~~~~~~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 237 AGWQERYPNVAITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp TTHHHHCTTSCEEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred HHHHhhCCCCcEEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 44433 48889998999999999999998 99999999999999999999999999999999999999875
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.91 E-value=1.1e-23 Score=148.92 Aligned_cols=142 Identities=18% Similarity=0.252 Sum_probs=110.7
Q ss_pred CCcEEEEEecCCc-------hHHHHHHHHHHHcccC--CCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESE-------CRHYALQWALENLGDA--ISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKA 72 (154)
Q Consensus 2 ~~~~iLv~vd~~~-------~~~~~l~~a~~la~~~--~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (154)
.+++||||+|+++ .+..++++|..+|+.. + ++|+++||.+...... ... ......+...+..++.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~--a~l~ll~v~~~~~~~~---~~~-~~~~~~~~~~~~~~~~ 228 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKD--PDVHLLSAYPVAPINI---AIE-LPDFDPNLYNNALRGQ 228 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSS--CCEEEEEEECCCSCSC---CTT-CTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCC--CeEEEEEeecCcchhh---hcc-CCcccHHHHHHHHHHH
Confidence 4789999999999 5799999999999997 6 8999999998764322 111 0111122333344444
Q ss_pred HHHHHHHHHHHHHhcCCe-EEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 73 ALALLGRAKEICAKHGVV-AETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~-~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.++.++.+. +..|+. ++..+..|++.+.|.+++++.++||||||+++++.+.++++||++++++++++||||+||+
T Consensus 229 ~~~~l~~~~---~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~ 305 (319)
T 3olq_A 229 HLIAMKELR---QKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKP 305 (319)
T ss_dssp HHHHHHHHH---HHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred HHHHHHHHH---HHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECC
Confidence 444444443 445653 5677888999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q 031713 152 P 152 (154)
Q Consensus 152 ~ 152 (154)
.
T Consensus 306 ~ 306 (319)
T 3olq_A 306 D 306 (319)
T ss_dssp T
T ss_pred C
Confidence 5
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.87 E-value=1.7e-21 Score=134.72 Aligned_cols=116 Identities=23% Similarity=0.277 Sum_probs=101.3
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
.+++||||+|+++.+..++++|..+|...+ ++++++||.+.. +..++.++++.
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~--a~l~ll~v~~~~-------------------------~~~~~~l~~~~ 205 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALG--LGVRVVSVHEDP-------------------------ARAEAWALEAE 205 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHT--CCEEEEEECSSH-------------------------HHHHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCC--CEEEEEEEcCcH-------------------------HHHHHHHHHHH
Confidence 368999999999999999999999999877 899999998752 12234556667
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+.+...|+++++.+..|++.++|.+++++. ||||||+ .+.++++||++++++++++|||+++|
T Consensus 206 ~~l~~~~~~~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 206 AYLRDHGVEASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHTTCCEEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHcCCceEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 777778999999888999999999999977 9999998 67889999999999999999999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.86 E-value=0.00075 Score=41.14 Aligned_cols=130 Identities=15% Similarity=0.068 Sum_probs=94.1
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
|+++||.+.-.-.+..+.+....+..... ...+.+| .|..... .+.. ..+..+..+++.++.-..
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~-~~~f~VL--VPa~~~~----a~~~--------e~~~a~~~A~~~l~~sl~ 65 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDP-EARFVLL--VPAVPPP----GWVY--------EENEVRRRAEEEAAAAKR 65 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCT-TCEEEEE--EEEECCC----CSCC----------CHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCC-ceEEEEE--ecCCCCc----cccc--------ChHHHHHHHHHHHHHHHH
Confidence 47899999887777777766556665421 1344222 2222110 1111 223456667788888888
Q ss_pred HHHhcCCeEE-EEEecCChhhHHHHHHHhcC--CCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 83 ICAKHGVVAE-TMTEMGDPKNVICEAAEKHK--IQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 83 ~~~~~~~~~~-~~v~~g~~~~~i~~~a~~~~--~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
.++..|+.+. ..+..++|..+|.....+.+ +|-||+-+.. ...++||.-..+.+.=+ ...||+=+
T Consensus 66 aL~~~G~~a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~P-h~vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 66 ALEAQGIPVEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLP-PGLSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHTTTCCCSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECC-TTTCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHcCCcccccccCCCChHHHHHHHHHhcCCCCceEEEEcCC-chHHHHHhccHHHHHHh-cCCCEEEE
Confidence 8999999988 99999999999999999999 9999999985 45889999999998888 89999865
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=96.71 E-value=0.022 Score=40.01 Aligned_cols=94 Identities=11% Similarity=-0.046 Sum_probs=63.3
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCe-EEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSD-LIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~-l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
-++++|++.+...|..++..+..+....| .+ +.++|+....... .....+.+.
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~~~g--~~~v~av~vd~g~r~~------------------------s~~~~~~v~ 77 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFS--LKEVALAHFNHMLRES------------------------AERDEEFCK 77 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTT--CSEEEEEEEECCSSTH------------------------HHHHHHHHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHHHcC--CCEEEEEEEECCCCcc------------------------cHHHHHHHH
Confidence 46899999999999988888777766555 57 9999997653211 122344555
Q ss_pred HHHHhcCCeEEEEEec--------C-Chh--------hHHHHHHHhcCCCEEEEecCC
Q 031713 82 EICAKHGVVAETMTEM--------G-DPK--------NVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~--------g-~~~--------~~i~~~a~~~~~dlivlg~~~ 122 (154)
+.++..|+++.+.-.. | ++. ..+.+.+++.+++.|+.|++.
T Consensus 78 ~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 78 EFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred HHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 6666678886554421 2 111 244556788899999999863
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=96.71 E-value=0.019 Score=42.55 Aligned_cols=95 Identities=18% Similarity=0.154 Sum_probs=66.7
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
-++|+|++.+...|..++..+..+....+ .++.++||...... .......+.+.+
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~--~~v~avhvdhglrg-----------------------~~s~~~~~~v~~ 72 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWK--LQVIAAHVDHMFRG-----------------------RESEEEMEFVKR 72 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTT--CBCEEEEEECTTCT-----------------------HHHHHHHHHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcC--CeEEEEEEECCCCc-----------------------cccHHHHHHHHH
Confidence 46899999999999999988888776666 68999999765320 112233456677
Q ss_pred HHHhcCCeEEEEEec--------C-Ch--------hhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM--------G-DP--------KNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~--------g-~~--------~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.|+..|+++.+.-.. | ++ ...+.+++++.+++.|+.|++.
T Consensus 73 ~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~ 129 (464)
T 3a2k_A 73 FCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHG 129 (464)
T ss_dssp HHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCH
T ss_pred HHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCCh
Confidence 777889886654432 1 11 1345567888899999999863
No 28
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.45 E-value=0.12 Score=35.76 Aligned_cols=121 Identities=8% Similarity=-0.022 Sum_probs=80.5
Q ss_pred EEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 5 KVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEIC 84 (154)
Q Consensus 5 ~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (154)
+|||++.........+++|..+....| -++++++.+...... .. ++ ++.+.+.+
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~p~~~~~~-------------------l~---~q-l~~l~~~l 75 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLAGNTDKEN-------------------LL---SQ-LPSISEGF 75 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC---CTTC-------------------HH---HH-HHHHHHHH
T ss_pred cEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEccCCCccH-------------------HH---HH-HHHHHHHH
Confidence 699999888889999999999999876 999999987653321 01 11 36668888
Q ss_pred HhcCCeEEEEEecC-ChhhHHHHHHHhc-----CCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCC
Q 031713 85 AKHGVVAETMTEMG-DPKNVICEAAEKH-----KIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPV 153 (154)
Q Consensus 85 ~~~~~~~~~~v~~g-~~~~~i~~~a~~~-----~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~ 153 (154)
++.++..-+.++.- ++...+...++.+ .++.|++|......-. --+..+.. -+++....|++++..+
T Consensus 76 ~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~-~~y~~~i~-~~~~~~~nVlil~~~~ 148 (294)
T 3g40_A 76 QEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRD-EEIREIIR-KASMYRMGVLLFSKHP 148 (294)
T ss_dssp HHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGH-HHHHHHHH-HHHHTTCEEEEEECCT
T ss_pred HhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhh-HHHHHHHH-HHHHhCceEEEEecCC
Confidence 88999988877774 7888888877654 5788999986433222 12333333 2345578888887543
No 29
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=95.79 E-value=0.14 Score=38.08 Aligned_cols=114 Identities=14% Similarity=0.129 Sum_probs=75.7
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAE 92 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 92 (154)
--....+|..|++.|...+ .++..+++.++..... ........-+-+..+.+.+++.|+++
T Consensus 48 Rl~DN~aL~~A~~~a~~~~--~~v~~vfi~dp~~~~~----------------~~~r~~Fl~~sL~~L~~~L~~~G~~L- 108 (482)
T 2xry_A 48 RAEDNWALLFSRAIAKEAN--VPVVVVFCLTDEFLEA----------------GIRQYEFMLKGLQELEVSLSRKKIPS- 108 (482)
T ss_dssp CSSSCHHHHHHHHHHHHHT--SCEEEEEEECTTGGGS----------------CHHHHHHHHHHHHHHHHHHHHTTCCE-
T ss_pred CccccHHHHHHHHHHHHcC--CcEEEEEEeChhhhcc----------------CHHHHHHHHHHHHHHHHHHHHcCCcE-
Confidence 3345678888888776544 5898999988753321 11233445566777778888888765
Q ss_pred EEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 93 TMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 93 ~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+..|++.+.|.+++++.+++.|+...... ...+ .....+...+++++..+..
T Consensus 109 -~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~----~~~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 109 -FFLRGDPGEKISRFVKDYNAGTLVTDFSPL-RIKN----QWIEKVISGISIPFFEVDA 161 (482)
T ss_dssp -EEEESCHHHHHHHHHHHTTCSEEEEECCCS-HHHH----HHHHHHHHHCCSCEEEECC
T ss_pred -EEEeCCHHHHHHHHHHHcCCCEEEEecccc-hhHH----HHHHHHHHHcCCEEEEEeC
Confidence 345799999999999999999999875432 1111 1224444555888877653
No 30
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=95.79 E-value=0.19 Score=32.20 Aligned_cols=69 Identities=16% Similarity=0.215 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHH---hcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAAE---KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~---~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++.+.+++.|++++..+..- ...+.+.++++ +.+++.||.|+.+.+.+. .-+.-.++.||+-||-.
T Consensus 38 ~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------GvvAa~T~~PVIGVPv~ 109 (181)
T 4b4k_A 38 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTNLPVIGVPVQ 109 (181)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHTTCCSCEEEEECC
T ss_pred HHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch--------hhHHhcCCCCEEEEecC
Confidence 4566677778899999999885 45556666654 568899999987655443 34566788999999865
Q ss_pred C
Q 031713 153 V 153 (154)
Q Consensus 153 ~ 153 (154)
+
T Consensus 110 s 110 (181)
T 4b4k_A 110 S 110 (181)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.53 E-value=0.041 Score=38.08 Aligned_cols=99 Identities=16% Similarity=0.088 Sum_probs=66.5
Q ss_pred HHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 031713 18 YALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMTEM 97 (154)
Q Consensus 18 ~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 97 (154)
-++-.|..+.+..+ +++.++.|++.. ...+.+++.++++.+.++- +.... .+ .
T Consensus 180 LmlllAylL~~nW~--A~I~L~~vV~de----------------------~a~~~a~~~l~~Lv~~~Ri-~a~~~-vv-~ 232 (294)
T 3g40_A 180 LALLIAYKLKSNWK--ASLSFMTFAPTA----------------------IQAQAAENFLQSLAELARI-PNVKM-QV-L 232 (294)
T ss_dssp HHHHHHHHHHHHHT--CEEEEEEECSSH----------------------HHHHHHHHHHHHHHHHHTC-CSCEE-EE-E
T ss_pred HHHHHHHHHhhCcC--CeEEEEEecCCH----------------------HHHHHHHHHHHHHHHHhcC-CceEE-Ee-c
Confidence 34445555555555 999999998873 4566677888888887764 33332 23 3
Q ss_pred CChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 98 GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 98 g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
++..+.|.+ + .++||+++|-.....+. +..+++..+...++.+++.
T Consensus 233 ~~F~~il~~-s--~~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~ds 278 (294)
T 3g40_A 233 RENPIKSSK-L--PFASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALDS 278 (294)
T ss_dssp SSCTTTSSS-C--CCCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEECC
T ss_pred CchHHHHhh-C--cCCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecC
Confidence 555555544 4 48999999986555444 5578888888888887654
No 32
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=95.28 E-value=0.3 Score=36.64 Aligned_cols=90 Identities=18% Similarity=0.096 Sum_probs=63.3
Q ss_pred cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 031713 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVV 90 (154)
Q Consensus 11 d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 90 (154)
|..-....+|..|++.|...+ .+|..+++.++..... ..........-+-|+++.+.+++.|++
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~--~pVl~vfildp~~~~~--------------~~~~~r~~FL~~sL~dL~~~L~~lG~~ 110 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASA--SPLAVAFALFPRPFLL--------------SARRRQLGFLLRGLRRLAADAAARHLP 110 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHT--CCEEEEEECCCTTCGG--------------GCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CcchhhcHHHHHHHHhhhhcC--CCEEEEEeccchhhcc--------------CCCHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 334446778989998887655 6899999998752111 001133445556677777778777766
Q ss_pred EEEEEecCChhhHHHHHHHhcCCCEEEEe
Q 031713 91 AETMTEMGDPKNVICEAAEKHKIQLLIVG 119 (154)
Q Consensus 91 ~~~~v~~g~~~~~i~~~a~~~~~dlivlg 119 (154)
. .+..|++.+. .+++++.+++.|+..
T Consensus 111 L--~v~~G~p~~v-~~L~~~~~a~~V~~d 136 (506)
T 3umv_A 111 F--FLFTGGPAEI-PALVQRLGASTLVAD 136 (506)
T ss_dssp E--EEESSCTTHH-HHHHHHTTCSEEEEC
T ss_pred e--EEEecChHHH-HHHHHhcCCCEEEec
Confidence 4 5567999999 999999999999973
No 33
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=95.26 E-value=0.26 Score=30.91 Aligned_cols=68 Identities=16% Similarity=0.180 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 76 LLGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
..+++...++..|++++..+..- ...+.+.+++++...+.||.++...+.+. .-+.-.+++||+-||.
T Consensus 14 v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lp--------gvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 14 IAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLP--------GVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHH--------HHHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhH--------HHHHhccCCCEEEecC
Confidence 34566777778899999999875 67788888988766699999987654443 4466677899998885
No 34
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=95.24 E-value=0.24 Score=31.50 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHH---hcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAAE---KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~---~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++...+++.|++++..+..- ...+.+.++++ +.+++.||.++.+.+.+. .-+.-.+++||+-||-+
T Consensus 28 ~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp--------gvvA~~t~~PVIgVPv~ 99 (173)
T 4grd_A 28 MKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP--------GMLAAKTTVPVLGVPVA 99 (173)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH--------HHHHHHCCSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch--------hhheecCCCCEEEEEcC
Confidence 4566667778899999988775 45555555544 478899999987654443 34566778999999843
No 35
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=95.07 E-value=0.3 Score=30.90 Aligned_cols=68 Identities=16% Similarity=0.228 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHh---cCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEK---HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~---~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++...++..|+.++..+..- ...+.+.+++++ .+++.||.++...+.+. .-+.-.+++||+-||..
T Consensus 21 ~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 92 (166)
T 3oow_A 21 MKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP--------GMVAAKTTLPVLGVPVK 92 (166)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH--------HHHHHTCSSCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH--------HHHHhccCCCEEEeecC
Confidence 4566777778899999988775 556677777653 56899999987654443 44667788999999864
No 36
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=95.00 E-value=0.32 Score=30.88 Aligned_cols=68 Identities=16% Similarity=0.218 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHh---cCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEK---HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~---~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++...+++.|++++..+..- ...+.+.+++++ .+++.||.++...+.+. .-+.-.+++||+-||..
T Consensus 27 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 27 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP--------GMVAAKTNLPVIGVPVQ 98 (170)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHTTCCSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccCCCEEEeeCC
Confidence 4566677778899999988774 566777777654 45899999987654443 44667788999999864
No 37
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=94.98 E-value=0.32 Score=30.81 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=49.3
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHH---HhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAA---EKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a---~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++...+++.|++++..+..- ...+.+.+++ ++.+++.||.++...+.+. .-+.-.+++||+-||-.
T Consensus 22 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 93 (169)
T 3trh_A 22 METAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA--------GTIAAHTLKPVIGVPMA 93 (169)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH--------HHHHHTCSSCEEEEECC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhcCCCCEEEeecC
Confidence 4566777778899999988774 4555566654 4578999999987554433 44667788999999864
No 38
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=94.87 E-value=0.36 Score=30.74 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHH---hcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAAE---KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~---~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++...+++.|++++..+..- ...+.+.++++ +.+++.||.++...+.+. .-+.-.+++||+-||-.
T Consensus 28 ~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 99 (174)
T 3kuu_A 28 MQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP--------GMLAAKTLVPVLGVPVQ 99 (174)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH--------HHHHHTCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH--------HHHHhccCCCEEEeeCC
Confidence 4566777778899999988775 56666777765 467899999987654443 44666788999998854
No 39
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=94.57 E-value=0.48 Score=29.78 Aligned_cols=68 Identities=7% Similarity=0.070 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHh---c-CCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEK---H-KIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~---~-~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+++...+++.|++++..+..- ...+.+.+++++ . +++.||.++...+.+. .-+...+++||+-||.
T Consensus 18 ~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 89 (159)
T 3rg8_A 18 AEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS--------GFVDGFVKGATIACPP 89 (159)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH--------HHHHHHSSSCEEECCC
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH--------HHHHhccCCCEEEeeC
Confidence 4566777778899999988775 566666666543 2 5899999987654443 4466678899999985
Q ss_pred C
Q 031713 152 P 152 (154)
Q Consensus 152 ~ 152 (154)
.
T Consensus 90 ~ 90 (159)
T 3rg8_A 90 P 90 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=94.51 E-value=0.46 Score=29.96 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHH---hcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAAE---KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~---~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++...++..|++++..+..- ...+.+.++++ +.+++.||.++...+.+. .-+.-.+++||+-||-.
T Consensus 19 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 90 (163)
T 3ors_A 19 MQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP--------GMVASLTTLPVIGVPIE 90 (163)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH--------HHHHhccCCCEEEeeCC
Confidence 4566777788899999988774 56666666654 457899999987654443 44666788999999854
No 41
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=94.43 E-value=0.46 Score=33.56 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=58.7
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
+.+++|++.+...|..++..+.......+ .++.++|+....... +.++-+.+
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~--~~i~vv~vDtg~~~~--------------------------et~~~v~~ 97 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGK--LPFPVMHVDTRWKFQ--------------------------EMYRFRDQ 97 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSC--CSSCEEEECCSCCCH--------------------------HHHHHHHH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccC--CCEEEEEEECCCCCH--------------------------HHHHHHHH
Confidence 46899999999999999988887765433 578889986553211 11223334
Q ss_pred HHHhcCCeEEEEEe-----cCC-hh-------------hHHHHHHHhcCCCEEEEecCCC
Q 031713 83 ICAKHGVVAETMTE-----MGD-PK-------------NVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 83 ~~~~~~~~~~~~v~-----~g~-~~-------------~~i~~~a~~~~~dlivlg~~~~ 123 (154)
.++..|+++.+.-. .|. .. ..+.+.+++.+++.++.|.+..
T Consensus 98 ~~~~~gi~l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~D 157 (325)
T 1zun_A 98 MVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 157 (325)
T ss_dssp HHHTTTCCEEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHcCCCEEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccc
Confidence 45566777544321 121 11 2355667778999999998753
No 42
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=94.39 E-value=0.47 Score=30.46 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHH---hcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 76 LLGRAKEICAKHGVVAETMTEMG-DPKNVICEAAE---KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~---~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
..+++...++..|++++..+..- ...+.+.++++ +.+++.||.++...+.+. .-+...+++||+-||.
T Consensus 28 v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~ 99 (183)
T 1o4v_A 28 VMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP--------GMVASITHLPVIGVPV 99 (183)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH--------HHHHhccCCCEEEeeC
Confidence 34566777778899999999774 55666666655 456899999987654443 4466678899999986
Q ss_pred C
Q 031713 152 P 152 (154)
Q Consensus 152 ~ 152 (154)
.
T Consensus 100 ~ 100 (183)
T 1o4v_A 100 K 100 (183)
T ss_dssp C
T ss_pred C
Confidence 4
No 43
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=94.34 E-value=0.51 Score=30.28 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHh---cCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEK---HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~---~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++...++..|++++..+..- ...+.+.+++++ .+++.||.++...+.+. .-+.-.+++||+-||-.
T Consensus 37 ~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 108 (182)
T 1u11_A 37 MRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP--------GMCAAWTRLPVLGVPVE 108 (182)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH--------HHHHhccCCCEEEeeCC
Confidence 4566677778899999988774 566777777664 45899999987654443 44666788999999854
No 44
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=94.29 E-value=0.48 Score=30.18 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCeEEEEEecC-ChhhHHHHH---HHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 77 LGRAKEICAKHGVVAETMTEMG-DPKNVICEA---AEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~---a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
.+++...++..|++++..+..- ...+.+.++ +++.+++.||.++...+.+. .-+...+++||+-||-.
T Consensus 23 ~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp--------gvvA~~t~~PVIgVP~~ 94 (174)
T 3lp6_A 23 MADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP--------GMVAAATPLPVIGVPVP 94 (174)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH--------HHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH--------HHHHhccCCCEEEeeCC
Confidence 4566777778899999988774 445555555 55578999999987654443 44666788999999854
No 45
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=93.95 E-value=0.79 Score=31.35 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=52.4
Q ss_pred EecCCchHHHHHHHHHHHcccCCCCC--eEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031713 9 AIDESECRHYALQWALENLGDAISKS--DLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAK 86 (154)
Q Consensus 9 ~vd~~~~~~~~l~~a~~la~~~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (154)
+...++.+..+++.|.+++...| . +++++.+=+... +..+.++ ..
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g--~~~~V~av~~G~~~~---------------------------~~~lr~a----la 78 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSD--TDVEVVVVSVGPDRV---------------------------DESLRKC----LA 78 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCS--SCCEEEEEEESCGGG---------------------------HHHHHHH----HH
T ss_pred CCccCHHHHHHHHHHHHHHHhcC--CCceEEEEEeCchhH---------------------------HHHHHHH----Hh
Confidence 34456779999999999988755 5 898887754211 1122222 22
Q ss_pred cCCeEEEEEec----C-C---hhhHHHHHHHhcCCCEEEEecCCC
Q 031713 87 HGVVAETMTEM----G-D---PKNVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 87 ~~~~~~~~v~~----g-~---~~~~i~~~a~~~~~dlivlg~~~~ 123 (154)
.|..--+.+.. + + .+..|...+++.++|+|++|....
T Consensus 79 ~GaD~vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~ 123 (264)
T 1o97_C 79 KGADRAVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSS 123 (264)
T ss_dssp TTCSEEEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCT
T ss_pred cCCCEEEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 47664444422 1 2 344677788888999999998754
No 46
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=93.89 E-value=0.75 Score=34.85 Aligned_cols=128 Identities=9% Similarity=-0.037 Sum_probs=81.0
Q ss_pred EEEEEe--cCCchHHHHHHHHHHHccc--CCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 5 KVMVAI--DESECRHYALQWALENLGD--AISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 5 ~iLv~v--d~~~~~~~~l~~a~~la~~--~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
.+|+=+ |..-....+|..|++.+.. .+ .+|..++++++..... . ..........-+-+..+
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~--~pv~~vfi~dp~~~~~-------~------~~~~~r~~Fl~~sL~~L 94 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAANAAPGR--YFVRPIFILDPGILDW-------M------QVGANRWRFLQQTLEDL 94 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHHHSTTT--EEEEEEEEECTTGGGC-------T------TSCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCccccCC--CeEEEEEEECchhhcc-------c------CCCHHHHHHHHHHHHHH
Confidence 335544 4455567788888877654 33 5799999988754321 0 00012333445667777
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+.+++.|+++. +..|++.+.|.+++++.+++.|+....- ..... ....-....+....+++..+..
T Consensus 95 ~~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~~-~rd~~v~~~~~~~gi~~~~~~~ 161 (543)
T 2wq7_A 95 DNQLRKLNSRLF--VVRGKPAEVFPRIFKSWRVEMLTFETDI-EPYSV-TRDAAVQKLAKAEGVRVETHCS 161 (543)
T ss_dssp HHHHHHTTCCCE--EEESCHHHHHHHHHHHTTEEEEEEECCC-SHHHH-HHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHCCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEecCc-CHHHH-HHHHHHHHHHHHcCCEEEEecC
Confidence 777877787653 4579999999999999999999987542 22222 2223334556666788776654
No 47
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=93.77 E-value=0.51 Score=34.65 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=59.5
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHccc-CCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGD-AISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~-~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
-++|+|++.+...|..++..+..+... .+ -++.++||....... ..+..+.+.
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g--~~v~avhvdhglr~~------------------------s~~~~~~v~ 66 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPG--VALRAIHVHHGLSAN------------------------ADAWVTHCE 66 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTT--CEEEEEEECCSCCSS------------------------HHHHHHHHH
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCC--CeEEEEEEECCCCcc------------------------cHHHHHHHH
Confidence 468999999999999999888877765 55 699999997653221 122345566
Q ss_pred HHHHhcCCeEEEEEec----CChhhHHH---------HHHHhcCCCEEEEecCC
Q 031713 82 EICAKHGVVAETMTEM----GDPKNVIC---------EAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~----g~~~~~i~---------~~a~~~~~dlivlg~~~ 122 (154)
+.|+..|+++.+.-.. |...+... +.++ +++.|+.|++.
T Consensus 67 ~~~~~lgi~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~ 118 (433)
T 1ni5_A 67 NVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHL 118 (433)
T ss_dssp HHHHHTTCCEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCH
T ss_pred HHHHHcCCcEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccc
Confidence 6777778886553322 21111111 2222 58899999863
No 48
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=93.62 E-value=0.47 Score=31.45 Aligned_cols=87 Identities=9% Similarity=0.055 Sum_probs=58.7
Q ss_pred CCcEEEEEecC-----CchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDE-----SECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALAL 76 (154)
Q Consensus 2 ~~~~iLv~vd~-----~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (154)
.|+.|||-++. .+.+..++..|.+++...| .+++++-+=+.. .
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g--~~v~av~~G~~~-~----------------------------- 49 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELN--CQLEAVVAGTGL-K----------------------------- 49 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHT--CCEEEEEEESCC-T-----------------------------
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcC--CeEEEEEECCCH-H-----------------------------
Confidence 36789998875 4668999999999999877 788888774431 1
Q ss_pred HHHHHHHHHhcCCeEEEEEec----C-C---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 77 LGRAKEICAKHGVVAETMTEM----G-D---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~----g-~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+.+..+|..--+.+.. + + .++.|.+.+++.++|+|++|+..
T Consensus 50 --~~~~~~~~~Gad~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 50 --EIEKQILPYGVDKLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp --TTHHHHGGGTCSEEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred --HHHHHHHhcCCCEEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1112233457664344422 1 2 35678888999999999999753
No 49
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=92.25 E-value=1.8 Score=29.38 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=56.8
Q ss_pred CchHHHHHHHHHHHcccCCCCC--eEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 031713 13 SECRHYALQWALENLGDAISKS--DLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVV 90 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 90 (154)
++.+..+++.|.++... | . +++++.+=+... +..+.++ ...|..
T Consensus 39 np~d~~Ale~A~~Lke~-g--~~~~V~av~~G~~~a---------------------------~~~lr~a----la~GaD 84 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-K--LVKEVIAVSCGPAQC---------------------------QETIRTA----LAMGAD 84 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-T--SCSEEEEEEEESTTH---------------------------HHHHHHH----HHHTCS
T ss_pred CHHHHHHHHHHHHHHhc-C--CCceEEEEEeCChhH---------------------------HHHHHHH----HhcCCC
Confidence 34588999999999876 5 5 899888755321 1222222 123666
Q ss_pred EEEEEe------cC-C---hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcE
Q 031713 91 AETMTE------MG-D---PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPV 146 (154)
Q Consensus 91 ~~~~v~------~g-~---~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pv 146 (154)
--..+. .+ + .++.|...+++.++|+|++|........ +.+.-.+......|.
T Consensus 85 ~vi~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~----~~v~p~lA~~L~~~~ 146 (255)
T 1efv_B 85 RGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDC----NQTGQMTAGFLDWPQ 146 (255)
T ss_dssp EEEEEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC----CCHHHHHHHHHTCCE
T ss_pred EEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCch----hhHHHHHHHHhCCCc
Confidence 444443 13 2 3456777888889999999987543222 234444444444443
No 50
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=91.95 E-value=2 Score=29.14 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=50.2
Q ss_pred CCchHHHHHHHHHHHcccCCCCC--eEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 031713 12 ESECRHYALQWALENLGDAISKS--DLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGV 89 (154)
Q Consensus 12 ~~~~~~~~l~~a~~la~~~~~~~--~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 89 (154)
.++.+..+++.|.++... | . +++++.+=+... +..+.++ ...|.
T Consensus 35 lnp~d~~Ale~A~~Lke~-g--~~~~V~av~~G~~~a---------------------------~~~lr~a----la~Ga 80 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-G--QAEEIIAVSIGVKQA---------------------------AETLRTA----LAMGA 80 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-T--SCSEEEEEEEESGGG---------------------------HHHHHHH----HHHTC
T ss_pred CCHHHHHHHHHHHHHHhc-C--CCceEEEEEeCChhH---------------------------HHHHHHH----HhcCC
Confidence 457789999999999876 5 5 899887754311 1222222 12366
Q ss_pred eEEEEEe------cC-C---hhhHHHHHHHhcCCCEEEEecCCC
Q 031713 90 VAETMTE------MG-D---PKNVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 90 ~~~~~v~------~g-~---~~~~i~~~a~~~~~dlivlg~~~~ 123 (154)
.--+.+. .+ + .++.|...+++.++|+|++|....
T Consensus 81 D~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~ 124 (252)
T 1efp_B 81 DRAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAI 124 (252)
T ss_dssp SEEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCT
T ss_pred CEEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 6444443 12 2 345677788888999999998754
No 51
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=91.37 E-value=2 Score=27.97 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=27.9
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
|..++++|++.+.-.|..++..+.+. + .++..+|+...
T Consensus 1 m~~~~v~v~lSGG~DS~~ll~ll~~~----~--~~v~~~~~~~~ 38 (219)
T 3bl5_A 1 MKKEKAIVVFSGGQDSTTCLLWALKE----F--EEVETVTFHYN 38 (219)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHH----C--SEEEEEEEESS
T ss_pred CCCCCEEEEccCcHHHHHHHHHHHHc----C--CceEEEEEeCC
Confidence 67789999999998888777666542 3 48888988765
No 52
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=91.36 E-value=3.5 Score=30.75 Aligned_cols=130 Identities=12% Similarity=-0.040 Sum_probs=76.1
Q ss_pred cEEEEEe--cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 4 KKVMVAI--DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 4 ~~iLv~v--d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
+.+|+=+ |..-....+|..|++ .+ .++..|++.++........++.... .......-+-+..+.
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~----~~--~~v~~vfi~dp~~~~~~~~~~~~~~--------~~r~~Fl~~sL~~L~ 71 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALK----SG--LAITAVYCYDPRQFAQTHQGFAKTG--------PWRSNFLQQSVQNLA 71 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHH----TT--SEEEEEEEECGGGGSBCTTSCBSSC--------HHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHh----cC--CCEEEEEEECchhhcccccccCCCC--------HHHHHHHHHHHHHHH
Confidence 3455555 444556778877764 22 4788888887643221000000001 122334455677777
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+.+++.|+++. +..|++.+.|.+++++.+++.|+..... .......- ....+.+...++++..+..
T Consensus 72 ~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~~rd-~~v~~~l~~~gi~~~~~~~ 137 (489)
T 1np7_A 72 ESLQKVGNKLL--VTTGLPEQVIPQIAKQINAKTIYYHREV-TQEELDVE-RNLVKQLTILGIEAKGYWG 137 (489)
T ss_dssp HHHHHTTCCEE--EEESCHHHHHHHHHHHTTEEEEEEECCC-SHHHHHHH-HHHHHHHHHHTCEEEEECC
T ss_pred HHHHHCCCcEE--EEECCHHHHHHHHHHHcCCCEEEEeccc-CHHHHHHH-HHHHHHHHhcCCeEEEecC
Confidence 77777787654 4579999999999999999999888543 22322222 2233444555677766543
No 53
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=91.00 E-value=3.5 Score=30.15 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.5
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
+.++++|++.+.-.|..++.++.+. | .++..+|+...
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~----G--~eV~av~vd~g 40 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ----G--YDVIAYLANIG 40 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT----T--EEEEEEEEESS
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----C--CEEEEEEEECC
Confidence 3578999999998888777766542 5 68999998665
No 54
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=90.77 E-value=2.3 Score=27.63 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=27.5
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
|.+++++|++.+...|..++..+. ..| .++.++|+...
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~----~~g--~~v~~~~v~~~ 41 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILK----KLG--YNPHLITINFG 41 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHH----HTT--EEEEEEEEECS
T ss_pred ccCCeEEEEEECcHHHHHHHHHHH----HcC--CCeEEEEEeCC
Confidence 677899999999988887765443 345 68999998654
No 55
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=90.49 E-value=0.31 Score=36.91 Aligned_cols=120 Identities=13% Similarity=-0.010 Sum_probs=73.6
Q ss_pred cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Q 031713 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKH--- 87 (154)
Q Consensus 11 d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 87 (154)
|..-....+|..|++.+. .| .+|..|+|.++..... .. ..........+-|..+.+.+++.
T Consensus 13 DLRl~DN~AL~~A~~~~~-~g--~~vl~vfi~dp~~~~~-------~~------~~~~r~~Fl~~sL~~L~~~L~~~~~~ 76 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD-QG--IALIPVFIFDGESAGT-------KN------VGYNRMRFLLDSLQDIDDQLQAATDG 76 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT-TT--CBCCEEEEECSSSSCS-------TT------CCHHHHHHHHHHHHHHHHHGGGSCSS
T ss_pred CcchhhhHHHHHHHHhCC-CC--CCEEEEEecChhhhcc-------CC------CCHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334445567777766554 33 4788999988753321 00 00123345556677788888777
Q ss_pred CCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 88 GVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 88 ~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
|++. .+..|++.+.|.+++++.+++.|+.... ...... -......+.++...+++..+.
T Consensus 77 G~~L--~v~~G~~~~vl~~L~~~~~a~~V~~n~~-~~~~~~-~RD~~v~~~l~~~gi~~~~~~ 135 (538)
T 3tvs_A 77 RGRL--LVFEGEPAYIFRRLHEQVRLHRICIEQD-CEPIWN-ERDESIRSLCRELNIDFVEKV 135 (538)
T ss_dssp SSCC--EEEESCHHHHHHHHHHHHCEEEECEECC-CCGGGH-HHHHHHHHHHHHSSCCCCEEC
T ss_pred CCeE--EEEeCCHHHHHHHHHHHcCCCEEEEccC-CCHHHH-HHHHHHHHHHHhCCceEEEec
Confidence 7654 4567999999999999999999987654 233322 122233445556666665543
No 56
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=90.48 E-value=2.6 Score=27.79 Aligned_cols=85 Identities=9% Similarity=0.137 Sum_probs=54.8
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
|+||.|-+.++.++..++-.+.+- .. .++++.++-...+. ..+.+
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~-~~--l~~eI~~Visn~~~--------------------------------a~v~~ 46 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKA-GQ--LPCEVALLITDKPG--------------------------------AKVVE 46 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHT-TC--CSSEEEEEEESCSS--------------------------------SHHHH
T ss_pred CCEEEEEEeCCchHHHHHHHHHHc-CC--CCcEEEEEEECCCC--------------------------------cHHHH
Confidence 478999999998888887766542 22 22677665543221 13445
Q ss_pred HHHhcCCeEEEEEec--CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM--GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~--g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+++.|+++...-.. .+ ...++.+..++.++|++|+...+
T Consensus 47 ~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 47 RVKVHEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp HHHTTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHcCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 566778886442211 11 14688899999999999998764
No 57
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=90.41 E-value=0.98 Score=25.89 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=35.4
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC----CCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS----RGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~----~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...+.|.+++++.+++.||+|-.. .........-.++++|-.. +.||..+-+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECC
Confidence 356788999999999999999532 1111112333456777766 899988754
No 58
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=90.18 E-value=2.8 Score=27.70 Aligned_cols=84 Identities=19% Similarity=0.137 Sum_probs=52.9
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
+..||.|.+.++.++..++-.+.. ...+ .++.++-..++ . ...
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~--~~~~--~eI~~Vis~~~--a-------------------------------~~~ 53 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAV--GDYP--ARVVAVGVDRE--C-------------------------------RAA 53 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSS--TTCS--EEEEEEEESSC--C-------------------------------HHH
T ss_pred CCcEEEEEEeCChHHHHHHHHHHh--ccCC--CeEEEEEeCCc--h-------------------------------HHH
Confidence 456899999999888777755542 2222 56655533222 1 113
Q ss_pred HHHHhcCCeEEEEEec--CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 82 EICAKHGVVAETMTEM--GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~--g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
+.++++|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 54 ~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 54 EIAAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 4556678886554211 11 24678889999999999998764
No 59
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=89.68 E-value=4.4 Score=29.18 Aligned_cols=96 Identities=11% Similarity=0.006 Sum_probs=55.6
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
.++|+|++.+...|..++..+.+ .| -++..+|+........ .. . -...+..+.+..
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G--~~V~~v~~~~~~~~~~---------~~----~-----c~~~~d~~~a~~ 64 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QG--YDVIGIFMKNWDDTDE---------NG----V-----CTATEDYKDVVA 64 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TT--CEEEEEEEECCCCCC----------------------CHHHHHHHHHHH
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cC--CcEEEEEEECCCcccc---------cc----c-----CCCHHHHHHHHH
Confidence 46899999999888766655443 35 6899999865421100 00 0 000112344444
Q ss_pred HHHhcCCeEEEEEec-----------------CC------------hhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM-----------------GD------------PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~-----------------g~------------~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.++..|++..+.-.. |. -...+.++|++.++|.|+.|++.
T Consensus 65 va~~lGIp~~vv~~~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 65 VADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp HHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred HHHHhCCcEEEEeChHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 555556665443321 10 13456788999999999999853
No 60
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=89.64 E-value=3.1 Score=27.38 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=53.6
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
|+.+||.|.+.++.+...++-.++. ... .+.++.++-...+. .. .
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~-~~~--l~~~I~~Visn~~~--a~------------------------------~ 49 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQ-APG--FPAEIVAVFSDKAE--AG------------------------------G 49 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHT-STT--CSEEEEEEEESCTT--CT------------------------------H
T ss_pred CCCccEEEEEECCcHHHHHHHHHHH-cCC--CCcEEEEEEECCcc--cH------------------------------H
Confidence 5667899999999888777766652 122 22455554442221 11 0
Q ss_pred HHHHHhcCCeEEEEEec--CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 81 KEICAKHGVVAETMTEM--GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~--g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+++.|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 50 l~~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 50 LAKAEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred HHHHHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 14456678886543221 12 24688899999999999998764
No 61
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=88.34 E-value=4 Score=26.98 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=51.6
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
..+||.|-+.++.+...++-.++ +..+.+.++.++ +....... ..
T Consensus 7 ~~~ri~vl~SG~gsnl~all~~~---~~~~~~~~I~~V--is~~~~a~------------------------------~l 51 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLEALAKAF---STEESSVVISCV--ISNNAEAR------------------------------GL 51 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHT---CCC-CSEEEEEE--EESCTTCT------------------------------HH
T ss_pred CCCEEEEEEECCcHHHHHHHHHH---HcCCCCcEEEEE--EeCCcchH------------------------------HH
Confidence 35689999999988877665554 221111454444 43321111 02
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
+.+++.|+++...-...-...++.+..++.++|++|+...+
T Consensus 52 ~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 52 LIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp HHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 34566788865422222124788899999999999998764
No 62
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=88.21 E-value=2.8 Score=31.76 Aligned_cols=121 Identities=15% Similarity=0.110 Sum_probs=70.0
Q ss_pred cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhc----ccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 031713 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQ----ASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAK 86 (154)
Q Consensus 11 d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 86 (154)
|..-....+|..|++ .+ .+|..|+|.++...... ..+....+ ........+-|..+.+.+++
T Consensus 14 DLRl~DN~AL~~A~~----~~--~~vlpvfi~dp~~~~~~~~~~~~g~~~~g--------~~r~~Fl~~sL~~L~~~L~~ 79 (537)
T 3fy4_A 14 GLRVHDNPALEYASK----GS--EFMYPVFVIDPHYMESDPSAFSPGSSRAG--------VNRIRFLLESLKDLDSSLKK 79 (537)
T ss_dssp CCCSTTCHHHHHHHT----TC--SCEEEEEEECHHHHSCCTTSSSSBCSSCB--------HHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHh----cC--CCEEEEEEeChhhhcccccccccccccCC--------HHHHHHHHHHHHHHHHHHHH
Confidence 455556778877764 23 58999999886432210 00000011 12333445566777777777
Q ss_pred cCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 87 HGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 87 ~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
.|++. .++.|++.+.|.+++++.+++-|+..... ...... ........+....+++..+
T Consensus 80 ~G~~L--~v~~G~~~~vl~~L~~~~~~~~V~~n~~~-~p~~~~-RD~~v~~~l~~~gI~~~~~ 138 (537)
T 3fy4_A 80 LGSRL--LVFKGEPGEVLVRCLQEWKVKRLCFEYDT-DPYYQA-LDVKVKDYASSTGVEVFSP 138 (537)
T ss_dssp TTCCC--EEEESCHHHHHHHHHTTSCEEEEEECCCC-SHHHHH-HHHHHHHHHHHTTCEEECC
T ss_pred cCCce--EEEECCHHHHHHHHHHHcCCCEEEEeccc-cHHHHH-HHHHHHHHHHHcCCeEEEe
Confidence 77654 45579999999999999999999887542 222221 1222334445555555443
No 63
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=87.58 E-value=3.5 Score=30.38 Aligned_cols=117 Identities=12% Similarity=0.067 Sum_probs=71.7
Q ss_pred cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 031713 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVV 90 (154)
Q Consensus 11 d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 90 (154)
|..-....+|..|++. + .+|..+++.++...... . ..........-+-+..+.+.+++.|++
T Consensus 10 DLRl~DN~aL~~A~~~----~--~~v~~vfi~dp~~~~~~-----~-------~~~~~r~~Fl~~sL~~L~~~L~~~G~~ 71 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE----C--DRVIPVFIADPRQLINN-----P-------YKSEFAVSFMINSLLELDDELRKKGSR 71 (440)
T ss_dssp CCCSSSCHHHHHHHHH----S--SEEEEEEEECHHHHSSC-----T-------TCCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCccchhHHHHHHHhc----C--CCEEEEEEeChhhhccC-----C-------cCCHHHHHHHHHHHHHHHHHHHHcCCe
Confidence 3444456678777762 3 58999999886432110 0 000123344556677777888877876
Q ss_pred EEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 91 AETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 91 ~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+. +..|++.+.|.++++ +++.|+..... ....... .....+.+...++++..+..
T Consensus 72 L~--v~~g~~~~~l~~l~~--~~~~v~~~~~~-~~~~~~r-d~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 72 LN--VFFGEAEKVVSRFFN--KVDAIYVNEDY-TPFSISR-DEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp CE--EEESCHHHHHHHHCT--TCSEEEEECCC-SHHHHHH-HHHHHHHHHTTTCEEEEECC
T ss_pred EE--EEECCHHHHHHHHHc--CCCEEEEeccc-ChHHHHH-HHHHHHHHHHcCceEEEecC
Confidence 53 457999999999999 99999887542 2233222 23334455666788776653
No 64
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=87.36 E-value=3.8 Score=30.53 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=72.4
Q ss_pred cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 031713 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVV 90 (154)
Q Consensus 11 d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 90 (154)
|..-....+|..|++. . .+|..+++.++..... . ..........-+-+..+.+.+++.|++
T Consensus 12 DLRl~Dn~aL~~A~~~---~---~~v~~vfi~dp~~~~~-------~------~~~~~r~~fl~~sL~~L~~~L~~~G~~ 72 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQ---S---AQLIGLFCLDPQILQS-------A------DMAPARVAYLQGCLQELQQRYQQAGSR 72 (484)
T ss_dssp CCCSSSCHHHHHHHHH---C---SCEEEEEEECHHHHTC-------T------TCCHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCcchhHHHHHHHhc---C---CCEEEEEEEcchhhcC-------C------CCCHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 3444456677777653 1 3688888887643210 0 000123334455667777777777876
Q ss_pred EEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 91 AETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 91 ~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+. +..|++.+.|.+++++.+++.|+..... ....... .....+.+...++++..+..
T Consensus 73 L~--v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~~~r-d~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 73 LL--LLQGDPQHLIPQLAQQLQAEAVYWNQDI-EPYGRDR-DGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp EE--EEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHHH-HHHHHHHHHHTTCEEEEECC
T ss_pred EE--EEeCCHHHHHHHHHHHcCCCEEEEeccC-ChhHHHH-HHHHHHHHHHcCcEEEEecC
Confidence 53 4579999999999999999999987543 2233222 23334455666788777643
No 65
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=86.25 E-value=8.5 Score=28.55 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=29.5
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
..++|+|++.+.-.|..++.++.+. | .+++.+|+...
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~----G--~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK----G--AVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT----T--CEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----C--CEEEEEEEEcC
Confidence 3578999999999888888777552 5 69999999665
No 66
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=85.92 E-value=5 Score=29.45 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHH---HhcCC-CEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 76 LLGRAKEICAKHGVVAETMTEMG-DPKNVICEAA---EKHKI-QLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a---~~~~~-dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
..+++...++..|++++..|..- ...+.+.+++ ++.++ +.||.++...+.+. .-+...+++||+-||
T Consensus 280 ~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp--------gvva~~t~~PVIgvP 351 (425)
T 2h31_A 280 HCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG--------PVMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH--------HHHHHHCSSCEEECC
T ss_pred HHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH--------hHHhccCCCCEEEee
Confidence 35566777778899999988774 4455555554 45667 58888876544333 446667889999998
Q ss_pred CC
Q 031713 151 KP 152 (154)
Q Consensus 151 ~~ 152 (154)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 67
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=85.27 E-value=1.5 Score=32.66 Aligned_cols=91 Identities=11% Similarity=0.061 Sum_probs=59.0
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAE 92 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 92 (154)
.-....+|..|++. .. .+|..++|.++..... ...........-+-|..+.+.+++.|+++.
T Consensus 12 Rl~DN~aL~~A~~~--~~---~~v~~vfi~dp~~~~~-------------~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~ 73 (471)
T 1dnp_A 12 RLHDNLALAAACRN--SS---ARVLALYIATPRQWAT-------------HNMSPRQAELINAQLNGLQIALAEKGIPLL 73 (471)
T ss_dssp CSTTCHHHHHHSSS--TT---SEEEEEEEECHHHHHH-------------TTCCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cccchHHHHHHHhC--CC---CCEEEEEEECchhhcc-------------CCCCHHHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 33455577666542 12 4899999988643210 000122334455667777778888887764
Q ss_pred EEEe--cCChhhHHHHHHHhcCCCEEEEecC
Q 031713 93 TMTE--MGDPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 93 ~~v~--~g~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
+... .|++.+.|.+++++.+++.|+....
T Consensus 74 v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 74 FREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred EEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 4322 6899999999999999999998654
No 68
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=85.14 E-value=5.9 Score=25.76 Aligned_cols=36 Identities=6% Similarity=-0.042 Sum_probs=27.6
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCC
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTE 45 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~ 45 (154)
.+|+|++.+...|..++..+.++. .++.++|+....
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~------~~v~~v~vd~g~ 80 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR------PDIPVILTDTGY 80 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS------TTCEEEEEECSC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC------CCCeEEEeeCCC
Confidence 489999999999998887766552 367888886653
No 69
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=84.74 E-value=9.6 Score=27.82 Aligned_cols=111 Identities=16% Similarity=0.079 Sum_probs=68.6
Q ss_pred cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 031713 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVV 90 (154)
Q Consensus 11 d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 90 (154)
|..-....+|..|++ . +++..+++.++.... . ........-+-+.++.+.+++.|++
T Consensus 11 DlRl~Dn~aL~~A~~----~---~~v~~vfi~d~~~~~---------------~-~~~r~~fl~~sL~~l~~~L~~~g~~ 67 (420)
T 2j07_A 11 DLRLHDHPALLEALA----R---GPVVGLVVLDPNNLK---------------T-TPRRRAWFLENVRALREAYRARGGA 67 (420)
T ss_dssp CCCSTTCHHHHHHHT----T---SCEEEEEEECHHHHS---------------S-CHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCccccHHHHHHHh----C---CCEEEEEEECCcccc---------------C-CHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 444455667776653 2 268888887653210 0 1233344556677777888888876
Q ss_pred EEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 91 AETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 91 ~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+ .+..|++.+.|.+++++.+++.|+..... .......- ..|-..+++++..+..
T Consensus 68 l--~~~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~rd----~~v~~~l~i~~~~~~~ 121 (420)
T 2j07_A 68 L--WVLEGLPWEKVPEAARRLKAKAVYALTSH-TPYGRYRD----GRVREALPVPLHLLPA 121 (420)
T ss_dssp E--EEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHHHH----HHHHHHCSSCEEEECC
T ss_pred E--EEEeCCHHHHHHHHHHHcCCCEEEEeccc-ChhHHHHH----HHHHHHcCCeEEEeCC
Confidence 5 44579999999999999999999987543 22232222 2333333777776643
No 70
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=84.29 E-value=4 Score=28.26 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh-cCCCcEEEEcCC
Q 031713 76 LLGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH-NAKCPVLVVRKP 152 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~-~~~~pvliv~~~ 152 (154)
..+++...++..+++++...... ..+..+.+.+.+ ++|.||+.- |.+.+ ..+++.+.. ...+|+.++|-.
T Consensus 27 ~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~G-GDGTl-----~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 27 NLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFG-GDGTV-----FECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEE-CHHHH-----HHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEc-cchHH-----HHHHHHHhhCCCCCcEEEecCC
Confidence 34556667777788887766554 455566655543 788877653 22322 234455554 256899999865
No 71
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=84.16 E-value=11 Score=28.22 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=27.3
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
++++|++.+...|..++..+.+. | .++.++|+...
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g--~~v~av~vd~g 244 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----G--VDHLAVFVDHG 244 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----T--CEEEEEEEECS
T ss_pred ccEEEEecCCcchHHHHHHHHHc----C--CeEEEEEEeCC
Confidence 68999999998888777665543 5 58999998654
No 72
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=83.92 E-value=5.7 Score=24.59 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCC-hhhHHHHHHHhcCCCEEEEecCCCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGD-PKNVICEAAEKHKIQLLIVGSHSRG 124 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~-~~~~i~~~a~~~~~dlivlg~~~~~ 124 (154)
+++.+.+.+.+.+.|++++..-.... ....+..... ++|.||+|+....
T Consensus 19 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 68 (159)
T 3fni_A 19 DRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAA 68 (159)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTT
T ss_pred HHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCC
Confidence 44555666666667887665444444 4556666666 7999999987544
No 73
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=83.80 E-value=12 Score=28.21 Aligned_cols=129 Identities=9% Similarity=0.037 Sum_probs=74.6
Q ss_pred EEEEEe--cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhccc-CCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 5 KVMVAI--DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQAS-MFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 5 ~iLv~v--d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
.+|+=+ |.--....+|..|++. + .+|..++++++........ ++.... .......-+-|..+.
T Consensus 41 ~~l~WfrrDLRl~DN~AL~~A~~~----~--~~v~~vfi~dp~~~~~~~~~~~~~~~--------~~r~~Fl~~sL~~L~ 106 (525)
T 2j4d_A 41 VTILWFRNDLRVLDNDALYKAWSS----S--DTILPVYCLDPRLFHTTHFFNFPKTG--------ALRGGFLMECLVDLR 106 (525)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHT----C--SEEEEEEEECGGGGSBCTTTCCBSSC--------HHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcchhHHHHHHHhc----C--CcEEEEEEECchhhcccccccCCCCC--------HHHHHHHHHHHHHHH
Confidence 344444 3444566677777642 2 4788888887643211000 000001 123334455667777
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC--CcEEEEcC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK--CPVLVVRK 151 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~--~pvliv~~ 151 (154)
+.+++.|+.+. ++.|++.+.|.+++++.+++.|+..... ........ ....+.+.... +++..+..
T Consensus 107 ~~L~~~G~~L~--v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~p~~~~rd-~~v~~~l~~~gv~i~~~~~~~ 174 (525)
T 2j4d_A 107 KNLMKRGLNLL--IRSGKPEEILPSLAKDFGARTVFAHKET-CSEEVDVE-RLVNQGLKRVGNSTKLELIWG 174 (525)
T ss_dssp HHHHHTTCCCE--EEESCHHHHHHHHHHHHTCSEEEEECCC-SHHHHHHH-HHHHHHHHTTCSSCEEEEECC
T ss_pred HHHHHcCCeEE--EEeCCHHHHHHHHHHHcCCCEEEEeccC-CHHHHHHH-HHHHHHHHhcCCceEEEEecC
Confidence 77777787653 4579999999999999999999987543 22333222 23344455555 67766543
No 74
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=83.79 E-value=4 Score=28.71 Aligned_cols=72 Identities=17% Similarity=0.106 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHh-hcCCCcEEEEcCC
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCV-HNAKCPVLVVRKP 152 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~-~~~~~pvliv~~~ 152 (154)
+..+++...+++.|+++....... ..+..+.+.+...++|+||+.- |.+.+ ..+++.++ ....+|+.++|-.
T Consensus 42 ~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~G-GDGTv-----~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 42 RELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAG-GDGTL-----NEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE-CHHHH-----HHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEc-CchHH-----HHHHHHHHhCCCCCcEEEecCC
Confidence 344566777777787776655444 3445555555556788777653 32322 23555554 3456899999864
No 75
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=83.43 E-value=11 Score=27.42 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=28.0
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCC
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTE 45 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~ 45 (154)
++++|++.+...|..++.++.+. ++ .++..+|+....
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g--~~V~av~vd~g~ 37 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YR--AEVIAFTADIGQ 37 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HT--CEEEEEEEESSC
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hC--CcEEEEEEeCCC
Confidence 47999999998888888776542 35 589999986653
No 76
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=83.09 E-value=5.2 Score=24.75 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRG 124 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~ 124 (154)
++..+.+.+.+.+.|++++..-........+..... ++|.||+|+...+
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~ 63 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQ 63 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHH--HCSEEEEECCBSS
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcC
Confidence 445555666666678776654444444455555555 7999999987543
No 77
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=83.00 E-value=1.4 Score=26.96 Aligned_cols=52 Identities=15% Similarity=-0.007 Sum_probs=35.2
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC----CCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS----RGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~----~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...+.|.+++++.+++.||+|-.. .........-.+++.|-...+.||..+-
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~D 95 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHD 95 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 357899999999999999999542 1111112223456666666688998874
No 78
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=82.03 E-value=1.8 Score=29.10 Aligned_cols=91 Identities=15% Similarity=0.101 Sum_probs=49.7
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCch-hhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFI-YVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
.+++|.+++...|..++-. +...| -++..++....... .. .+. ....+.+..
T Consensus 5 MKvvvl~SGGkDSs~al~~----l~~~G--~eV~~L~~~~~~~~~s~---~~h------------------~~~~e~a~~ 57 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYW----AIKNR--FSVKFLVTMVSENEESY---MYH------------------TINANLTDL 57 (237)
T ss_dssp SEEEEECCSSHHHHHHHHH----HHHTT--CEEEEEEEEECC-----------------------------CCSSSHHHH
T ss_pred CEEEEEecCcHHHHHHHHH----HHHcC--CeEEEEEEEcCCCCCcc---ccC------------------CccHHHHHH
Confidence 5899999998888755543 44445 57776654333211 00 000 011123334
Q ss_pred HHHhcCCeEEEEEecCC---hhhHHHHHHHhcCCCEEEEecC
Q 031713 83 ICAKHGVVAETMTEMGD---PKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~g~---~~~~i~~~a~~~~~dlivlg~~ 121 (154)
.++..|++....-..|. -.+.+.+..++.+++-+|.|.-
T Consensus 58 ~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 58 QARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp HHHHHTCCEEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred HHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 45556888666555553 4556666777778999999974
No 79
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=81.14 E-value=5.5 Score=22.49 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcC
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHK 112 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~ 112 (154)
..++++....+..|.++.+.....+..+.+.+..++.+
T Consensus 88 nrleefsrevrrrgfevrtvtspddfkkslerlirevg 125 (134)
T 2l69_A 88 NRLEEFSREVRRRGFEVRTVTSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhcCceEEEecChHHHHHHHHHHHHHhc
Confidence 44566777777778777665444567777777777543
No 80
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=79.99 E-value=11 Score=25.39 Aligned_cols=40 Identities=0% Similarity=-0.218 Sum_probs=30.9
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTE 45 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~ 45 (154)
+.+++|++.+...|..++..+.++... + .++.++|+....
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~--~~i~vv~iDtg~ 80 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-Y--YMPELLFIDTLH 80 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-S--CCCEEEEECCSC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-C--CCeeEEEecCCC
Confidence 457999999999999899888776654 3 478888885553
No 81
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=79.57 E-value=11 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=27.4
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
+++++|.+.+.-.|..++.++.+. + .++..+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~--~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----Y--DDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----C--SEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----C--CCEEEEEEECC
Confidence 579999999998888777666543 2 48888888654
No 82
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=79.41 E-value=13 Score=25.81 Aligned_cols=95 Identities=8% Similarity=0.006 Sum_probs=55.6
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccC----------------CCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHH
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDA----------------ISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQE 67 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~----------------~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (154)
.+|+|++.+...|..++..+....... ....++.++|+.......
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fp------------------- 114 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFP------------------- 114 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCH-------------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCH-------------------
Confidence 479999999999998888776653110 001468889886543211
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEEEec----CChhhHHHHHHHh-cCCCEEEEecCCCC
Q 031713 68 NQKKAALALLGRAKEICAKHGVVAETMTEM----GDPKNVICEAAEK-HKIQLLIVGSHSRG 124 (154)
Q Consensus 68 ~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~----g~~~~~i~~~a~~-~~~dlivlg~~~~~ 124 (154)
+.++-+.+..+.+|+++.+.... ....+.+.++.+. ...+.+++|.+...
T Consensus 115 -------et~~fv~~~~~~ygl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 115 -------TLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp -------HHHHHHHHHHHHTTEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred -------HHHHHHHHHHHHcCCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 11222223334557665332111 2355666677665 46789999997543
No 83
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=79.06 E-value=1.3 Score=27.58 Aligned_cols=53 Identities=9% Similarity=0.052 Sum_probs=34.3
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC----CCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS----RGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~----~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...+.|.+++++.+++.||+|-.- .........-.++..+....++||..+-+
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDE 98 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDE 98 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecC
Confidence 468889999999999999999541 11111111123445566666899988754
No 84
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=78.84 E-value=14 Score=25.76 Aligned_cols=83 Identities=8% Similarity=0.100 Sum_probs=52.2
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
.+||.|.+.++.++..++-.+..- ...+ +++.++-...+. +..
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~I~~Visn~~~----------------------------------~~~ 147 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHS-DELD--CDIACVISNHQD----------------------------------LRS 147 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHT-TCSC--SEEEEEEESSST----------------------------------THH
T ss_pred CcEEEEEEeCCchhHHHHHHHHHC-CCCC--cEEEEEEECcHH----------------------------------HHH
Confidence 468999999988887777666532 2222 566655443221 112
Q ss_pred HHHhcCCeEEEEEec-C-C--hhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM-G-D--PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~-g-~--~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+++.|+++...-.. . . ...++.+..++.++|++|+....
T Consensus 148 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 148 MVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp HHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 345678886543212 1 1 24678899999999999998764
No 85
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=78.57 E-value=8.9 Score=26.87 Aligned_cols=69 Identities=14% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcCC
Q 031713 78 GRAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRKP 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~~ 152 (154)
+++...+.+.|+++......+ .....+...+...++|+||+.- |.+. +..+++.+.. ...+|+.++|-.
T Consensus 47 ~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~G-GDGT-----l~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 47 REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGG-GDGT-----INEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEE-SHHH-----HHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEc-cchH-----HHHHHHHHhhcccCCCCeEEEecCc
Confidence 455666777788876655443 3344555444445788776643 2222 2345566654 456899999864
No 86
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=78.31 E-value=7.9 Score=27.58 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCChh----hHHHHHHHhcCCCEEE-EecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 76 LLGRAKEICAKHGVVAETMTEMGDPK----NVICEAAEKHKIQLLI-VGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~v~~g~~~----~~i~~~a~~~~~dliv-lg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
..+++...+++.|+++...+..|++. +.+.+.+++.++|+|| +|-.. .+.++..+.....+|++.||
T Consensus 46 ~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs--------v~D~aK~iA~~~~~p~i~IP 117 (370)
T 1jq5_A 46 AGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK--------TLDTAKAVADELDAYIVIVP 117 (370)
T ss_dssp THHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH--------HHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH--------HHHHHHHHHHhcCCCEEEec
Confidence 45667777777788875445556533 3455667788999888 55321 12233333344468999988
Q ss_pred CC
Q 031713 151 KP 152 (154)
Q Consensus 151 ~~ 152 (154)
-.
T Consensus 118 TT 119 (370)
T 1jq5_A 118 TA 119 (370)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 87
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=78.05 E-value=3.3 Score=26.55 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=30.3
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEec
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTAR 42 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~ 42 (154)
|+++|++.+.++..+-++.+..-.+.+. | .+++++--.
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~~-g--~~V~vv~T~ 38 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQH-F--DEVNILFSP 38 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTTT-S--SCEEEEECG
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEEch
Confidence 5689999999999999999888777654 5 688777543
No 88
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=77.75 E-value=17 Score=26.16 Aligned_cols=96 Identities=18% Similarity=0.079 Sum_probs=56.4
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
-++|+|++.+.-.|..++..+. ..| -++..+|+........ .. . -......+.+..
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~----~~G--~~V~~v~~~~~~~~~~---------~~----~-----~~s~~d~~~a~~ 72 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQ----QQG--YQVEGLFMKNWEEDDG---------EE----Y-----CTAAADLADAQA 72 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHH----TTC--CEEEEEEEECCCCCSH---------HH----H-----HHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHHHHHHHHHH----HcC--CeEEEEEEEcCccccc---------cC----C-----CCCHHHHHHHHH
Confidence 4689999999888876664443 335 6899999864321100 00 0 001222445555
Q ss_pred HHHhcCCeEEEEEec-----------------CC------------hhhHHHHHHHh-cCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM-----------------GD------------PKNVICEAAEK-HKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~-----------------g~------------~~~~i~~~a~~-~~~dlivlg~~~ 122 (154)
.++..|++..+.-.. |. -...+.++|++ .++|.|+.|++.
T Consensus 73 va~~LGIp~~vvd~~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 73 VCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp HHHHHTCCEEEEECHHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred HHHHcCCcEEEEeCcHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 566667775544321 11 12456677887 999999999754
No 89
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=77.03 E-value=16 Score=25.35 Aligned_cols=83 Identities=14% Similarity=0.239 Sum_probs=52.6
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
.+||.|.+.++.++..++-.+.+- ...+ +++.++-...+. . ..
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~--~~i~~Visn~~~--~--------------------------------~~ 137 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKM-GELK--MDIVGIVSNHPD--F--------------------------------AP 137 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSC--CEEEEEEESSST--T--------------------------------HH
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHc-CCCC--cEEEEEEeCcHH--H--------------------------------HH
Confidence 468999999998888887766543 2222 566554332221 0 12
Q ss_pred HHHhcCCeEEEEEec-CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM-GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~-g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.++++|+++...-.. .+ ...++.+..++.++|++|+....
T Consensus 138 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 138 LAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp HHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 255678887543222 22 24578899999999999998764
No 90
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=76.61 E-value=16 Score=25.22 Aligned_cols=83 Identities=12% Similarity=0.174 Sum_probs=51.6
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
.+||.|-+.++.++..++-.+.+- ...+ +++.++-...+. +..
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~--~~i~~Visn~~~----------------------------------~~~ 132 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRI-GQLG--MDVVAVVSNHPD----------------------------------LEP 132 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHT-TSSC--CEEEEEEESSST----------------------------------THH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHC-CCCC--cEEEEEEeCcHH----------------------------------HHH
Confidence 458899999988887777666532 2222 566555443321 011
Q ss_pred HHHhcCCeEEEEEec-CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM-GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~-g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.++++|+++...-.. .+ ...++.+..++.++|++|+....
T Consensus 133 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 133 LAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp HHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 245678886543222 12 24578899999999999998764
No 91
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=76.42 E-value=22 Score=26.66 Aligned_cols=117 Identities=11% Similarity=-0.021 Sum_probs=70.7
Q ss_pred cCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe
Q 031713 11 DESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVV 90 (154)
Q Consensus 11 d~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 90 (154)
|..-....+|..|++. + .+..|+|+++..... .... .......-+-|..+.+.+++.|++
T Consensus 21 DLRl~DN~aL~~A~~~----~---~v~pvfi~dp~~~~~------~~~~-------~~~~~fl~~sL~~L~~~L~~~G~~ 80 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G---PVIALFVWAPEEEGH------YHPG-------RVSRWWLKNSLAQLDSSLRSLGTC 80 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S---CEEEEEEECGGGGTT------CCCC-------HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCccchhHHHHHHHhC----C---CEEEEEEECchhccc------CCcc-------hHHHHHHHHHHHHHHHHHHHCCCe
Confidence 4444566788877763 3 466777877643211 0000 011113456677777788888877
Q ss_pred EEEEEec-CChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 91 AETMTEM-GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 91 ~~~~v~~-g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+. +.. |++.+.|.+++++.+++.|+.... ........ .......+...++++..+..
T Consensus 81 L~--v~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~r-d~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 81 LI--TKRSTDSVASLLDVVKSTGASQIFFNHL-YDPLSLVR-DHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp EE--EEECSCHHHHHHHHHHHHTCCEEEEECC-CSHHHHHH-HHHHHHHHHTTTCEEEEECC
T ss_pred EE--EEeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHHH-HHHHHHHHHHcCcEEEEECC
Confidence 53 344 699999999999999999998753 22222222 22234555666788777653
No 92
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=75.86 E-value=5.1 Score=26.74 Aligned_cols=47 Identities=9% Similarity=0.009 Sum_probs=29.7
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 103 VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
..++.+.+.+.|.|.+|-...-...+ .-.+...+-+ .+.|+++.|..
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~~--~~~~v~~ik~-~~~Pvvlfp~~ 68 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTEDN--VLRMMSKVRR-FLVPCVLEVSA 68 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHHH--HHHHHHHHTT-SSSCEEEECSC
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHHH--HHHHHHHhhc-cCCCEEEeCCC
Confidence 35556678899999999753222222 2234444444 78999998865
No 93
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=75.22 E-value=14 Score=25.64 Aligned_cols=36 Identities=14% Similarity=0.007 Sum_probs=26.9
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
++++|++.+.-.|..++..+.+. .| .++..+|+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g--~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IG--DRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HG--GGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hC--CCEEEEEEcCC
Confidence 58999999998888777665543 24 58889998654
No 94
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=75.02 E-value=6.8 Score=29.55 Aligned_cols=36 Identities=8% Similarity=0.055 Sum_probs=27.0
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
++++|++.+.-.|..++..+.+. .| .+++++|+...
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G--~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IG--DQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HG--GGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hC--CeEEEEEeccC
Confidence 68999999998888777655442 34 58999998654
No 95
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=73.53 E-value=24 Score=25.70 Aligned_cols=35 Identities=14% Similarity=0.003 Sum_probs=26.9
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEecc
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARP 43 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~ 43 (154)
-.+++|++.+...|..++..+.+ .| .++..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G--~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RG--VSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BT--EEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cC--CcEEEEEEeC
Confidence 46899999999888877765543 35 6999999864
No 96
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=73.05 E-value=7.9 Score=26.83 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=57.3
Q ss_pred EEEEEecCCch---HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 031713 5 KVMVAIDESEC---RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAK 81 (154)
Q Consensus 5 ~iLv~vd~~~~---~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (154)
--|+.+.+.+. ....+++.++++...+ ++|.++-..... . +...+.+.
T Consensus 27 g~l~iiGGgedk~~~~~i~~~~v~lagg~~--~~I~~IptAs~~---~------------------------~~~~~~~~ 77 (291)
T 3en0_A 27 PAILIIGGAEDKVHGREILQTFWSRSGGND--AIIGIIPSASRE---P------------------------LLIGERYQ 77 (291)
T ss_dssp CCEEEECSSCCSSSCCHHHHHHHHHTTGGG--CEEEEECTTCSS---H------------------------HHHHHHHH
T ss_pred ceEEEEECCCCccChHHHHHHHHHHcCCCC--CeEEEEeCCCCC---h------------------------HHHHHHHH
Confidence 34667766553 4568999999998643 566665322211 1 01122233
Q ss_pred HHHHhcCC-eEEEEEec---CChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh
Q 031713 82 EICAKHGV-VAETMTEM---GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH 140 (154)
Q Consensus 82 ~~~~~~~~-~~~~~v~~---g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~ 140 (154)
+.+++.|. .++..-.. ......+.+..+ ++|.|+++-.....+.+.+.++-...+++
T Consensus 78 ~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L~ 138 (291)
T 3en0_A 78 TIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRIR 138 (291)
T ss_dssp HHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHHH
Confidence 44555577 45443332 123456677777 89999998654444444444444444443
No 97
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=72.67 E-value=22 Score=24.97 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=37.5
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC---CCCcccccccchh-HHHhhcCCCcEEEEcC
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS---RGPIQRAFLGSVS-NYCVHNAKCPVLVVRK 151 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~---~~~~~~~~~gs~~-~~l~~~~~~pvliv~~ 151 (154)
...+.+.|++++... . ..+..+.+ ++|.+++|+.+ .+..-. ..|+.. .-+.+...+|++++-+
T Consensus 165 a~~L~~~gI~vtli~--D---sa~~~~m~--~vd~VivGAd~i~~nG~v~n-kiGT~~iAl~Ak~~~vP~~V~a~ 231 (315)
T 3ecs_A 165 AKALCHLNVPVTVVL--D---AAVGYIME--KADLVIVGAEGVVENGGIIN-KIGTNQMAVCAKAQNKPFYVVAE 231 (315)
T ss_dssp HHHHHTTTCCEEEEC--G---GGHHHHGG--GCSEEEEECSEECTTSCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHcCCCEEEEe--h---hHHHHHHH--hCCEEEECceEEecCCCeee-hhhhHHHHHHHHHhCCCEEEEec
Confidence 344456788875533 2 22333334 89999999975 223333 345533 3455777899999843
No 98
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=72.39 E-value=7.8 Score=26.00 Aligned_cols=48 Identities=6% Similarity=0.025 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCCC
Q 031713 103 VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKPV 153 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~~ 153 (154)
..++.+.+.+.|.|.+|-...-...+ .-.+...+-+ .+.|+++.|...
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~~--~~~~v~~ik~-~~~Piil~p~~~ 74 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTEDN--VIHLMSKIRR-YPLPLVLEISNI 74 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHHH--HHHHHHHHTT-SCSCEEEECCCS
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHHH--HHHHHHHhcC-cCCCEEEecCCH
Confidence 45555678899999999753222222 2234444444 789999988653
No 99
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=72.30 E-value=17 Score=25.33 Aligned_cols=81 Identities=6% Similarity=-0.009 Sum_probs=46.4
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEI 83 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (154)
.+++|.+.+ -.|..++- ++...| .+++.+|.... . ...+.+ .++.+.
T Consensus 180 ~kvlvllSG-vDS~vaa~----ll~~~G--~~v~~v~~~~~----~------------------~~~~~a----~~~a~~ 226 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIF----LMMKRG--VEVIPVYIGKD----D------------------KNLEKV----RSLWNL 226 (307)
T ss_dssp CEEEEECSS-HHHHHHHH----HHHHBT--CEEEEEEESCS----S------------------HHHHHH----HHHHHH
T ss_pred CcEEEEEeC-CcHHHHHH----HHHhCC--CeEEEEEEEEC----H------------------HHHHHH----HHHHHH
Confidence 589999999 66654432 334456 79999998711 0 111112 222222
Q ss_pred HHh----cCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecC
Q 031713 84 CAK----HGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 84 ~~~----~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
+.. .+++.. +... ...+.++|++.++|.|+.|.+
T Consensus 227 l~~~~~~~~i~~~--vv~~--~~~~~~~A~~~ga~~I~tG~~ 264 (307)
T 1vbk_A 227 LKRYSYGSKGFLV--VAES--FDRVLKLIRDFGVKGVIKGLR 264 (307)
T ss_dssp HHTTCTTSCCCCE--EESS--HHHHHHHHHHHTCCEEECCCC
T ss_pred HhhhccCCCCcEE--EeCC--CHHHHHHHHHcCCCEEEECcc
Confidence 222 244432 3220 233448899999999999986
No 100
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=72.29 E-value=18 Score=23.82 Aligned_cols=84 Identities=7% Similarity=0.109 Sum_probs=52.7
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
..||.|-+.++.+...++-.++.- . .+ .++.++-...+. .. ..+
T Consensus 5 ~~riavl~SG~Gsnl~all~~~~~-~-~~--~eI~~Vis~~~~--a~------------------------------~~~ 48 (215)
T 3tqr_A 5 PLPIVVLISGNGTNLQAIIGAIQK-G-LA--IEIRAVISNRAD--AY------------------------------GLK 48 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHT-T-CS--EEEEEEEESCTT--CH------------------------------HHH
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHc-C-CC--CEEEEEEeCCcc--hH------------------------------HHH
Confidence 457899999998888777666542 1 33 566555443221 11 024
Q ss_pred HHHhcCCeEEEEEec--CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM--GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~--g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+++.|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 49 ~A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 49 RAQQADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp HHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHcCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 455678886542211 11 24678899999999999998654
No 101
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=72.10 E-value=8.1 Score=22.43 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCeEEEEEec-CChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 78 GRAKEICAKHGVVAETMTEM-GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~-g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+++.+.+++.|++++..... +...+ ... ++|++++|..=+..+. .........++||.+++.
T Consensus 24 ~km~~~a~~~gi~v~i~a~~~~~~~~----~~~--~~DvvLLgPQV~y~~~------~ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 24 NAINEGANLTEVRVIANSGAYGAHYD----IMG--VYDLIILAPQVRSYYR------EMKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHTCSEEEEEEETTSCTT----TGG--GCSEEEECGGGGGGHH------HHHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHCCCceEEEEcchHHHHh----hcc--CCCEEEEChHHHHHHH------HHHHHhhhcCCcEEEeCH
Confidence 34444455567877665432 33332 224 7999999976332222 224455566799998863
No 102
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=71.93 E-value=8.6 Score=25.27 Aligned_cols=37 Identities=8% Similarity=0.182 Sum_probs=29.8
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
..++|++++.++..+-++++..-.+.+. | .+++++--
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~~-g--~eV~vv~T 39 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQE-E--REVHFLIS 39 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHHT-T--CEEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEEC
Confidence 5689999999999999999888777664 5 68877644
No 103
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=71.25 E-value=8.7 Score=24.76 Aligned_cols=34 Identities=9% Similarity=-0.012 Sum_probs=27.6
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEE
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFT 40 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~ 40 (154)
++|++++.++..+-++.+..-.+.+. | .+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~~-g--~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEEL-D--FSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHHT-T--CEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHHC-C--CEEEEEE
Confidence 79999999999988888887777654 5 6877764
No 104
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=70.97 E-value=18 Score=25.72 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=40.2
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC---CCCcccccccchhHHH-hhcCCCcEEEEcC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS---RGPIQRAFLGSVSNYC-VHNAKCPVLVVRK 151 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~---~~~~~~~~~gs~~~~l-~~~~~~pvliv~~ 151 (154)
..+.+.|++++... ...+....++.++|.+|+|+.. .+..-+ -.|+..-.+ .++.++|++++-+
T Consensus 202 ~eL~~~GI~vtlI~-----Dsa~~~~M~~~~Vd~VivGAd~V~aNG~v~N-KiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 202 WELMKDGIEVYVIT-----DNMAGWLMKRGLIDAVVVGADRIALNGDTAN-KIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp HHHHTTTCEEEEEC-----GGGHHHHHHTTCCSEEEECCSEEETTSCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHhCCCCEEEEe-----hhHHHHHhhcCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 34456688876543 3345556666679999999975 222322 355544444 4666799999843
No 105
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=70.51 E-value=18 Score=23.52 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCe-EEEEEecCChhhHHHHHHHhcCCCEEEEecCC-CCCcccccccchhHHHhhcCCCcEEEE
Q 031713 74 LALLGRAKEICAKHGVV-AETMTEMGDPKNVICEAAEKHKIQLLIVGSHS-RGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~-~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~-~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..++.+.+.+++.|++ +-.-...|..+....+.. .+.++|++..+. ......+-+..-..+-++....+|+.-
T Consensus 29 ~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~ 104 (201)
T 1vp8_A 29 EETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQ 104 (201)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEE
Confidence 45566666777777776 333333466777667655 368999998752 222223455666677777777777653
No 106
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=70.34 E-value=8.6 Score=24.49 Aligned_cols=37 Identities=8% Similarity=0.120 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
+-++|++.+.++..+-++++..-.+.+ .| .+++++--
T Consensus 4 m~k~IllgvTGs~aa~k~~~ll~~L~~-~g--~~V~vv~T 40 (175)
T 3qjg_A 4 MGENVLICLCGSVNSINISHYIIELKS-KF--DEVNVIAS 40 (175)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHTT-TC--SEEEEEEC
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CC--CEEEEEEC
Confidence 458999999999999998887766665 45 68777653
No 107
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=70.06 E-value=20 Score=25.82 Aligned_cols=64 Identities=16% Similarity=0.238 Sum_probs=40.0
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC---CCCcccccccchhHHH-hhcCCCcEEEEcC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS---RGPIQRAFLGSVSNYC-VHNAKCPVLVVRK 151 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~---~~~~~~~~~gs~~~~l-~~~~~~pvliv~~ 151 (154)
..+.+.|++++... ...+..+.++.++|.+|+|+.+ .+..-. -.|+..-.+ .++.++|++++-+
T Consensus 227 ~eL~~~GIpvtlI~-----Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 227 WELMQGGIDVTLIT-----DSMAAHTMKEKQISAVIVGADRIAKNGDTAN-KIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp HHHHTTTCEEEEEC-----GGGHHHHHHHTTCCEEEECCSEEETTCCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHcCCCEEEEe-----hhHHHHHhhhcCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 33456688876533 3344555666789999999975 222322 355544444 4666799999844
No 108
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=69.49 E-value=18 Score=23.36 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=38.8
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC---CCcEEEE
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA---KCPVLVV 149 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~---~~pvliv 149 (154)
...++..|.++.. +-...+.+.+.+.+++.++|+|.+......... ....+.+.+-+.. .+||++-
T Consensus 109 a~~l~~~G~~v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 109 AMMLESGGFTVYN-LGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMM--NMKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp HHHHHHTTCEEEE-CCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTH--HHHHHHHHHHHTTCGGGCEEEEE
T ss_pred HHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHH--HHHHHHHHHHhcCCCCCCeEEEE
Confidence 4444556755432 222358999999999999999999875332222 1233334333332 2777764
No 109
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=69.41 E-value=4.7 Score=28.66 Aligned_cols=50 Identities=12% Similarity=0.240 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC--CCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS--RGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~--~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+..+.++.++ ++|+||+|-.. .+-...++...+.+. ++++++|++.|.+
T Consensus 177 ~a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~N 228 (341)
T 2p0y_A 177 QAVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICN 228 (341)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeC
Confidence 45666778888 89999999643 223334556666565 6778899888864
No 110
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=68.97 E-value=15 Score=25.41 Aligned_cols=84 Identities=10% Similarity=0.109 Sum_probs=46.2
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
.+||.|-+.++.++..++-.+.+- ...+ +++.++-...+.. +..
T Consensus 88 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~i~~Visn~~~a---------------------------------~~~ 131 (287)
T 3nrb_A 88 RKKVVIMVSKFDHCLGDLLYRHRL-GELD--MEVVGIISNHPRE---------------------------------ALS 131 (287)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHH-TSSC--CEEEEEEESSCGG---------------------------------GCC
T ss_pred CcEEEEEEeCCCcCHHHHHHHHHC-CCCC--eEEEEEEeCChHH---------------------------------HHH
Confidence 467888888888777777666542 2222 5655544333210 112
Q ss_pred HHHhcCCeEEEEEec-C---ChhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM-G---DPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~-g---~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.++++|+++...-.. . .....+.+..++.++|++|+....
T Consensus 132 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagym 175 (287)
T 3nrb_A 132 VSLVGDIPFHYLPVTPATKAAQESQIKNIVTQSQADLIVLARYM 175 (287)
T ss_dssp CCCCTTSCEEECCCCGGGHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred HHHHcCCCEEEEeccCcchhhHHHHHHHHHHHhCCCEEEhhhhh
Confidence 234556665432111 1 123467777777788888886553
No 111
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=68.86 E-value=21 Score=25.78 Aligned_cols=64 Identities=13% Similarity=0.200 Sum_probs=40.2
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC---CCCcccccccchhHHH-hhcCCCcEEEEcC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS---RGPIQRAFLGSVSNYC-VHNAKCPVLVVRK 151 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~---~~~~~~~~~gs~~~~l-~~~~~~pvliv~~ 151 (154)
..+.+.|++++... ...+..+.++.++|.+|+|+.+ .+..-. -.|+..-.+ .++..+|++++-+
T Consensus 231 ~eL~~~GIpvtlI~-----Dsa~~~~M~~~~Vd~ViVGAD~V~aNG~v~N-KiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 231 YECVQEDIPCTLIC-----DGAASSLMLNRKIDAVVVGADRICQNGDTAN-KIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp HHHHHTTCCEEEEC-----GGGHHHHHHHSCCCEEEECCSEECTTCCEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHcCCCEEEEe-----hhHHHHHhhcCCCCEEEECccEEecCCCEee-cccHHHHHHHHHHcCCCEEEeCC
Confidence 33455688876543 3345555666789999999975 222322 355554444 4666799999844
No 112
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=68.36 E-value=33 Score=25.31 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCeEEEEEecCChhh---HHHHHHHhcCCCEEEEecCCCCCcc
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKN---VICEAAEKHKIQLLIVGSHSRGPIQ 127 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~---~i~~~a~~~~~dlivlg~~~~~~~~ 127 (154)
++.......++++...-...++.. ..++.++..++|++|+.+.|+....
T Consensus 146 qL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d 197 (443)
T 3dm5_A 146 QLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKED 197 (443)
T ss_dssp HHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCC
T ss_pred HHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccch
Confidence 334444555766533222234443 3345666678999999988765544
No 113
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=68.26 E-value=22 Score=23.28 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=27.5
Q ss_pred HHHHHhcCCeEEEEEecC--C---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 81 KEICAKHGVVAETMTEMG--D---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g--~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+++.|+++...-... + ..+++.+..++.++|++|+...+
T Consensus 44 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 44 IERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCch
Confidence 345566788864311111 1 14678888999999999998654
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=68.22 E-value=19 Score=22.38 Aligned_cols=66 Identities=9% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHhcCCeEEEEEec-CChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC--CCcEEEE
Q 031713 80 AKEICAKHGVVAETMTEM-GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA--KCPVLVV 149 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~-g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~--~~pvliv 149 (154)
+...++..|.++ .... ..+.+.+++.+++.++|+|.+......... ....+.+.+-... .++|++=
T Consensus 38 va~~l~~~G~eV--i~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~--~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 38 VARALRDAGFEV--VYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLH--LMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHHHTTCEE--ECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHH--HHHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHHCCCEE--EECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHH--HHHHHHHHHHhcCCCCCEEEEe
Confidence 344556667544 2222 258899999999999999999886432222 2333444443332 3666653
No 115
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=68.14 E-value=23 Score=23.31 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 031713 17 HYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMTE 96 (154)
Q Consensus 17 ~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 96 (154)
...+..++++|+..| ++..++|.-..... .. ...+...+...+.+.++.+.+++.|+.+-.+..
T Consensus 75 ~~~~~~~i~~A~~lG--a~~v~~~~g~~~~~----------~~----~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~ 138 (254)
T 3ayv_A 75 LRRLLFGLDRAAELG--ADRAVFHSGIPHGR----------TP----EEALERALPLAEALGLVVRRARTLGVRLLLENS 138 (254)
T ss_dssp HHHHHHHHHHHHHTT--CSEEEEECCCCTTC----------CH----HHHHHTHHHHHHHTHHHHHHHHHHTCEEEEECS
T ss_pred HHHHHHHHHHHHHhC--CCEEEECCCCCccc----------cc----ccHHHHHHHHHHHHHHHHHHHhhcCCEEEEcCC
Confidence 456788899999988 78777774222110 00 011233445566677777777778988766665
Q ss_pred cCChhhHHHHHHHhcC
Q 031713 97 MGDPKNVICEAAEKHK 112 (154)
Q Consensus 97 ~g~~~~~i~~~a~~~~ 112 (154)
.+...+.+.+++++.+
T Consensus 139 ~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 139 HEPHPEALRPVLEAHA 154 (254)
T ss_dssp SCSSGGGTHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcC
Confidence 5544455556655443
No 116
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=67.93 E-value=30 Score=24.59 Aligned_cols=89 Identities=7% Similarity=-0.015 Sum_probs=50.5
Q ss_pred EEEEEecCCch--HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 5 KVMVAIDESEC--RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 5 ~iLv~vd~~~~--~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
++++|--+... ....++...+++... ...++.++|-..... .++..+.+.+
T Consensus 227 ~~i~pgHg~~~~~~~~~~~~~~~~~~~~-~~~k~~i~~~S~~gn--------------------------T~~la~~i~~ 279 (404)
T 2ohh_A 227 QMIAPSHGQIWTDPMKIIEAYTGWATGM-VDERVTVIYDTMHGS--------------------------TRKMAHAIAE 279 (404)
T ss_dssp SEEECSSSCBBSSHHHHHHHHHHHHTTC-CCSEEEEEECCSSSH--------------------------HHHHHHHHHH
T ss_pred cEEecCCCccccCHHHHHHHHHHHhccC-CCCcEEEEEECCChH--------------------------HHHHHHHHHH
Confidence 34555544322 345555555555421 225787777654321 2444555566
Q ss_pred HHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+.|++++..-........+..... .+|.||+|+..
T Consensus 280 ~l~~~g~~v~~~~~~~~~~~~~~~~l~--~~d~iiigsP~ 317 (404)
T 2ohh_A 280 GAMSEGVDVRVYCLHEDDRSEIVKDIL--ESGAIALGAPT 317 (404)
T ss_dssp HHHTTTCEEEEEETTTSCHHHHHHHHH--TCSEEEEECCE
T ss_pred HHHhCCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECcc
Confidence 666667776655444434455555555 89999999864
No 117
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=67.72 E-value=6.1 Score=27.98 Aligned_cols=50 Identities=26% Similarity=0.392 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC--CCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS--RGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~--~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+..+.++..+ ++|+||+|-.. .+-...+....+.+. ++.+++|++.|.+
T Consensus 166 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 217 (332)
T 2ppv_A 166 EPMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSN 217 (332)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcC
Confidence 35667888888 89999999643 222333455556555 6778999888865
No 118
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=67.00 E-value=5.6 Score=28.12 Aligned_cols=50 Identities=6% Similarity=0.150 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC--CCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS--RGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~--~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+..+.++.++ ++|+||+|-.. .+-...++...+.+. ++++++|++.|.+
T Consensus 173 ~a~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 173 LASRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp CBCSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 35567888888 89999999643 223334556666565 6778899888864
No 119
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=66.97 E-value=15 Score=20.83 Aligned_cols=65 Identities=9% Similarity=0.008 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
.+...+...|..+. . ..+ .+..++..++..+|+|++...-.+ ..++ .+...+-.. ..+|++++-.
T Consensus 18 ~l~~~L~~~g~~v~--~-~~~-~~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 85 (127)
T 3i42_A 18 TFKELLEMLGFQAD--Y-VMS-GTDALHAMSTRGYDAVFIDLNLPD-TSGL---ALVKQLRALPMEKTSKFVAVSG 85 (127)
T ss_dssp HHHHHHHHTTEEEE--E-ESS-HHHHHHHHHHSCCSEEEEESBCSS-SBHH---HHHHHHHHSCCSSCCEEEEEEC
T ss_pred HHHHHHHHcCCCEE--E-ECC-HHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhhccCCCCEEEEEC
Confidence 34444555564322 1 233 444556667788999999976322 2211 233444443 3488888754
No 120
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=66.84 E-value=22 Score=24.57 Aligned_cols=84 Identities=10% Similarity=0.011 Sum_probs=49.4
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKE 82 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (154)
.+||.|-+.++.++..++-.+.+- ...+ +++.+ |+...+... ..
T Consensus 89 ~~ri~vl~Sg~g~nl~~ll~~~~~-g~l~--~~i~~--Visn~p~~~-------------------------------~~ 132 (288)
T 3obi_A 89 RRKVMLLVSQSDHCLADILYRWRV-GDLH--MIPTA--IVSNHPRET-------------------------------FS 132 (288)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHT-TSSC--EEEEE--EEESSCGGG-------------------------------SC
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHC-CCCC--eEEEE--EEcCCChhH-------------------------------HH
Confidence 468999999998888777666542 2222 45444 443321111 12
Q ss_pred HHHhcCCeEEEEEec-CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 83 ICAKHGVVAETMTEM-GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~-g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.++++|+++...-.. .+ ....+.+..++.++|++|+....
T Consensus 133 ~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 133 GFDFGDIPFYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp CTTTTTCCEEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred HHHHcCCCEEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 245568776542211 11 23567888888899999987654
No 121
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=66.75 E-value=30 Score=24.14 Aligned_cols=77 Identities=10% Similarity=0.031 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+-. +..++| .+.+++.++|-+.+-.........--+=..-..|...++.||++.
T Consensus 66 Er~~vi~~~~~~~~g-rvpViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 143 (314)
T 3d0c_A 66 EAKQVATRVTELVNG-RATVVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIY 143 (314)
T ss_dssp HHHHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCeEEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 334455555554432 4554444444 555554 567889999999888764433332111223356778889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 144 n 144 (314)
T 3d0c_A 144 F 144 (314)
T ss_dssp E
T ss_pred e
Confidence 4
No 122
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=65.94 E-value=26 Score=23.24 Aligned_cols=76 Identities=5% Similarity=-0.259 Sum_probs=46.8
Q ss_pred HHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEec-
Q 031713 19 ALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMTEM- 97 (154)
Q Consensus 19 ~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~- 97 (154)
.++.++++|+..| ++...+++.+..... .....+...+.+.++.+.+++.|+.+-.+...
T Consensus 85 ~~~~~i~~A~~lG--~~~v~~~~~p~~~~~-----------------~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~ 145 (281)
T 3u0h_A 85 LLPDRARLCARLG--ARSVTAFLWPSMDEE-----------------PVRYISQLARRIRQVAVELLPLGMRVGLEYVGP 145 (281)
T ss_dssp THHHHHHHHHHTT--CCEEEEECCSEESSC-----------------HHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCC
T ss_pred HHHHHHHHHHHcC--CCEEEEeecCCCCCc-----------------chhhHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 4566888999988 777776654321110 01344556677788888888889986655431
Q ss_pred ----------CChhhHHHHHHHhcCC
Q 031713 98 ----------GDPKNVICEAAEKHKI 113 (154)
Q Consensus 98 ----------g~~~~~i~~~a~~~~~ 113 (154)
....+.+.++.++.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~v~~ 171 (281)
T 3u0h_A 146 HHLRHRRYPFVQSLADLKTFWEAIGA 171 (281)
T ss_dssp GGGCCSSEECCCSHHHHHHHHHHHCC
T ss_pred cccccccccccCCHHHHHHHHHHcCC
Confidence 2344556666665543
No 123
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=65.44 E-value=34 Score=24.29 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCC
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~ 123 (154)
+..+.+.+.+.+.|+.++..-........+..... ++|.||+|+...
T Consensus 268 ~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~gsp~~ 314 (402)
T 1e5d_A 268 KMARVLAESFRDEGCTVKLMWCKACHHSQIMSEIS--DAGAVIVGSPTH 314 (402)
T ss_dssp HHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHH--TCSEEEEECCCB
T ss_pred HHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECCcc
Confidence 33444444555567766654444444555655556 899999998643
No 124
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=65.36 E-value=6.5 Score=27.73 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC--CCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS--RGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~--~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+..+.++..+ ++|+||+|-.. .+-...+....+.+. ++++++|++.|.+
T Consensus 167 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 218 (323)
T 2o2z_A 167 KPLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICN 218 (323)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcC
Confidence 35677888888 89999999643 222233456666665 6778999888865
No 125
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=65.21 E-value=31 Score=23.74 Aligned_cols=76 Identities=7% Similarity=0.007 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
+..+.++.+.+.... .+++ .+-.| +..++| .+.+++.++|-+.+-.........--+=..-..|...++.||+
T Consensus 55 Er~~v~~~~~~~~~g-r~pv--iaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPii 131 (292)
T 2ojp_A 55 EHADVVMMTLDLADG-RIPV--IAGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQI 131 (292)
T ss_dssp HHHHHHHHHHHHHTT-SSCE--EEECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHHHHHHHhCC-CCcE--EEecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 334555555554432 3443 34344 444444 4567788999988877543333221112233567888899999
Q ss_pred EEc
Q 031713 148 VVR 150 (154)
Q Consensus 148 iv~ 150 (154)
+..
T Consensus 132 lYn 134 (292)
T 2ojp_A 132 LYN 134 (292)
T ss_dssp EEC
T ss_pred EEe
Confidence 874
No 126
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=65.11 E-value=22 Score=25.41 Aligned_cols=63 Identities=17% Similarity=0.282 Sum_probs=39.8
Q ss_pred HHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC--CCCcccccccchhHHHh-hcCCCcEEEEcC
Q 031713 83 ICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS--RGPIQRAFLGSVSNYCV-HNAKCPVLVVRK 151 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~--~~~~~~~~~gs~~~~l~-~~~~~pvliv~~ 151 (154)
.+.+.|++++... ...+..+.++.++|++|+|+.+ .++.-. -.|+..-.++ ++.++|++++-+
T Consensus 201 eL~~~GI~vtlI~-----Dsa~~~~M~~~~Vd~VivGAd~V~aNGv~N-KiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 201 ELMEDGIDVTLIT-----DSMVGIVMQKGMVDKVIVGADRIVRDAVFN-KIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp HHHHTTCCEEEEC-----GGGHHHHHHTTCCSEEEECCSEEETTEEEE-ETTHHHHHHHHHHTTCCEEEECC
T ss_pred HHHhCCCCEEEEe-----hhHHHHHhhcCCCCEEEECccchhhcCccc-ccCHHHHHHHHHHcCCCEEEeCc
Confidence 3455688876543 3445556666679999999975 222222 3555444444 666799999844
No 127
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=65.07 E-value=26 Score=22.89 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=52.1
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEI 83 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (154)
+||.|-+.++.++..++-.++. ....+ .++.++-..++... ..+.
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~-~~~~~--~~I~~Vvs~~~~~~--------------------------------~~~~ 45 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTR-EPNSS--AQIDIVISNKAAVA--------------------------------GLDK 45 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHH-STTCS--CEEEEEEESSTTCH--------------------------------HHHH
T ss_pred CeEEEEEECCchHHHHHHHHHh-cCCCC--cEEEEEEeCCCChH--------------------------------HHHH
Confidence 4789999999888887765543 22222 56666555433211 0245
Q ss_pred HHhcCCeEEEEEec--CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 84 CAKHGVVAETMTEM--GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 84 ~~~~~~~~~~~v~~--g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
+.+.|+++...-.. .+ ....+.+..++.++|++|+...+
T Consensus 46 A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 46 AERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred HHHcCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 56778886532211 11 13678888999999999998764
No 128
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=64.44 E-value=21 Score=21.47 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=40.9
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC--CCcEEEE
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA--KCPVLVV 149 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~--~~pvliv 149 (154)
+...++..|.++.. .-...+.+.+++.+++.++|+|.+......... ....+.+.+-... .++|++=
T Consensus 23 v~~~l~~~G~~Vi~-lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 23 LDHAFTNAGFNVVN-IGVLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHHTTCEEEE-EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 34555667866532 222468999999999999999999986432222 2344545443332 2666553
No 129
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=64.31 E-value=32 Score=23.63 Aligned_cols=78 Identities=12% Similarity=0.015 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..+.| .+.+++.++|-+.+-.........--+=..-..|...++.||++.
T Consensus 55 Er~~v~~~~~~~~~g-r~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilY 133 (291)
T 3a5f_A 55 ERKETIKFVIDKVNK-RIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIY 133 (291)
T ss_dssp HHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334555555554432 34433333222444444 466888999999888754332222111112245667778999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 134 n 134 (291)
T 3a5f_A 134 N 134 (291)
T ss_dssp E
T ss_pred e
Confidence 4
No 130
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=63.97 E-value=32 Score=23.61 Aligned_cols=78 Identities=8% Similarity=-0.034 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..+.| .+.+++.++|-+++-.........--+=..-..|...++.||++.
T Consensus 54 Er~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilY 132 (292)
T 2vc6_A 54 EHEQVVEITIKTANG-RVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVY 132 (292)
T ss_dssp HHHHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 334455555554432 34443333333455444 566888999999888764333322111122346778889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 133 n 133 (292)
T 2vc6_A 133 N 133 (292)
T ss_dssp E
T ss_pred e
Confidence 4
No 131
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=63.80 E-value=24 Score=22.11 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHH----HhcCCCEEEEec
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAA----EKHKIQLLIVGS 120 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a----~~~~~dlivlg~ 120 (154)
-+.+.+.+.|.++......+|-.+.|.+.. ...++|+||..-
T Consensus 44 ~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 44 IIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 345666678999777776776555555433 235789988753
No 132
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=63.78 E-value=14 Score=24.78 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=29.8
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
..+++...+.++|+|.+|-+......+.+ .....+-+ .+.|+++.+-
T Consensus 23 ~~~~~~l~~~GaD~IelG~S~g~t~~~~~--~~v~~ir~-~~~Pivl~~y 69 (234)
T 2f6u_A 23 DEIIKAVADSGTDAVMISGTQNVTYEKAR--TLIEKVSQ-YGLPIVVEPS 69 (234)
T ss_dssp HHHHHHHHTTTCSEEEECCCTTCCHHHHH--HHHHHHTT-SCCCEEECCS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHhcC-CCCCEEEecC
Confidence 35677888899999999974222222222 34444433 6799988764
No 133
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=63.77 E-value=18 Score=24.35 Aligned_cols=44 Identities=7% Similarity=-0.059 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecC
Q 031713 77 LGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
++++++.+.+.|.++...+.-|--.+. +..+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~~~~~I~VDGGI~~~t-i~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTDRDILLEIDGGVNPYN-IAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHTSCCEEEEESSCCTTT-HHHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcCCCeeEEEECCcCHHH-HHHHHHcCCCEEEEehH
Confidence 455555555567777776766622333 45566779999999963
No 134
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=63.74 E-value=33 Score=23.60 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
+..+.++.+.+.... .++ ..+-.| +..++| .+.+++.++|-+.+-.........--+=..-..|...++.||+
T Consensus 54 Er~~v~~~~~~~~~g-rvp--viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 130 (294)
T 2ehh_A 54 EHEKVIEFAVKRAAG-RIK--VIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPII 130 (294)
T ss_dssp HHHHHHHHHHHHHTT-SSE--EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHhCC-CCc--EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 334455555554432 344 334444 455544 4668889999998877543333221111233567788899999
Q ss_pred EEc
Q 031713 148 VVR 150 (154)
Q Consensus 148 iv~ 150 (154)
+..
T Consensus 131 lYn 133 (294)
T 2ehh_A 131 IYN 133 (294)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 135
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=63.31 E-value=34 Score=23.61 Aligned_cols=78 Identities=9% Similarity=0.039 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+-.........--+=..-..|...++.||++.
T Consensus 54 Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 132 (297)
T 2rfg_A 54 EHKRVVALVAEQAQG-RVPVIAGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVY 132 (297)
T ss_dssp HHHHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCeEEEccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334455555554432 34443333222455544 567888999999888754333322111123356778889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 133 n 133 (297)
T 2rfg_A 133 N 133 (297)
T ss_dssp E
T ss_pred e
Confidence 4
No 136
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=63.29 E-value=42 Score=24.65 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=26.3
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
+-++++|++.+.-.|..++.++.+ .| .+++.+++.-.
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke----~G--~eViavt~d~G 49 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCE----KG--FDVIAYVANVG 49 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHH----TT--CEEEEEEEESS
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHH----CC--CeEEEEEEEcC
Confidence 346799999998877766665543 25 68988888544
No 137
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=63.14 E-value=18 Score=20.30 Aligned_cols=62 Identities=10% Similarity=0.208 Sum_probs=32.7
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEE
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVV 149 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv 149 (154)
...+...|..+. ...+. ....+..++..+|++++...-.+..... .....+-.. ..+|++++
T Consensus 22 ~~~L~~~g~~v~---~~~~~-~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 22 RSALEGRGFTVD---ETTDG-KGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHHHHTCEEE---EECCH-HHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred HHHHHhcCceEE---EecCH-HHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 333344465442 22333 3444555667899999987532111211 234444443 45899887
No 138
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=63.08 E-value=37 Score=24.01 Aligned_cols=78 Identities=14% Similarity=0.047 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+-.........--+=..-..|...++.||++.
T Consensus 85 Er~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilY 163 (343)
T 2v9d_A 85 ERKAIARFAIDHVDR-RVPVLIGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLY 163 (343)
T ss_dssp HHHHHHHHHHHHHTT-SSCEEEECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334455555554432 34433333222455544 566888999999887754333222111123356778889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 164 n 164 (343)
T 2v9d_A 164 N 164 (343)
T ss_dssp E
T ss_pred e
Confidence 4
No 139
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=62.98 E-value=20 Score=20.75 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~ 151 (154)
.+...+.+.|..+. ...+. ...++..++..+|+|++...-.. ...+ .+...+-. ...+|++++-.
T Consensus 21 ~l~~~l~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 21 LLNLMLEKGGFDSD---MVHSA-AQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHHTTCEEE---EECSH-HHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHHCCCeEE---EECCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEec
Confidence 33444445565532 22333 44455667788999999875322 2211 23344433 23588888754
No 140
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=62.97 E-value=34 Score=23.51 Aligned_cols=76 Identities=9% Similarity=0.060 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
+..+.++.+.+.... .++ +.+-.| +..+.| .+.+++.++|-+.+..........--+=..-..|...++.||+
T Consensus 58 Er~~v~~~~~~~~~g-rvp--viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPii 134 (293)
T 1f6k_A 58 EKKEIFRIAKDEAKD-QIA--LIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMI 134 (293)
T ss_dssp HHHHHHHHHHHHHTT-SSE--EEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHhCC-CCe--EEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 334455555554432 344 334444 444444 4668889999998877643333221111233567777889999
Q ss_pred EEc
Q 031713 148 VVR 150 (154)
Q Consensus 148 iv~ 150 (154)
+..
T Consensus 135 lYn 137 (293)
T 1f6k_A 135 VYS 137 (293)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 141
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=62.55 E-value=34 Score=23.43 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
+..+.++.+.+.... .++ ..+-.| +..+.| .+.+++.++|-+.+-.........--+=..-..|...++.||+
T Consensus 54 Er~~v~~~~~~~~~g-r~p--viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPii 130 (289)
T 2yxg_A 54 EHKKVIEKVVDVVNG-RVQ--VIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIV 130 (289)
T ss_dssp HHHHHHHHHHHHHTT-SSE--EEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHhCC-CCc--EEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 334455555554432 343 334444 444444 4668889999998877543333221112233567788899999
Q ss_pred EEc
Q 031713 148 VVR 150 (154)
Q Consensus 148 iv~ 150 (154)
+..
T Consensus 131 lYn 133 (289)
T 2yxg_A 131 LYN 133 (289)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 142
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=62.43 E-value=38 Score=23.85 Aligned_cols=78 Identities=10% Similarity=0.011 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+..........--+=..-..|...++.||++.
T Consensus 88 Er~~vi~~~ve~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilY 166 (332)
T 2r8w_A 88 ERRRAIEAAATILRG-RRTLMAGIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIY 166 (332)
T ss_dssp HHHHHHHHHHHHHTT-SSEEEEEECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334455555554432 34443333333455544 567888999999887754433322111123356778889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 167 n 167 (332)
T 2r8w_A 167 N 167 (332)
T ss_dssp C
T ss_pred e
Confidence 4
No 143
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=62.41 E-value=33 Score=23.10 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=41.2
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc-CCCcEEEE
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN-AKCPVLVV 149 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~-~~~pvliv 149 (154)
+...++..|.++.. +-..-+.+.+.+.+++.++|+|.+......... ....+.+.+-+. .++||++-
T Consensus 143 va~~L~~~G~~Vi~-LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~--~~~~~i~~l~~~~~~~~v~vG 210 (258)
T 2i2x_B 143 VTALLRANGYNVVD-LGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMY--AFKEVNDMLLENGIKIPFACG 210 (258)
T ss_dssp HHHHHHHTTCEEEE-EEEECCSHHHHHHHHHHCCSEEEEECCCTTTTT--HHHHHHHHHHTTTCCCCEEEE
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHH--HHHHHHHHHHhcCCCCcEEEE
Confidence 34455667866533 222468999999999999999999875433222 223344444333 23787764
No 144
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=62.18 E-value=36 Score=23.57 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+-.........--+=..-..|...++.||++.
T Consensus 66 Er~~vi~~~~~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 144 (306)
T 1o5k_A 66 EREKLVSRTLEIVDG-KIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVY 144 (306)
T ss_dssp HHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 334555555554432 34433333222455544 466888999999887764333322111123356778889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 145 n 145 (306)
T 1o5k_A 145 N 145 (306)
T ss_dssp E
T ss_pred e
Confidence 4
No 145
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=62.13 E-value=36 Score=23.52 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+-.........--+=..-..|...++.||++.
T Consensus 66 Er~~v~~~~~~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 144 (301)
T 1xky_A 66 EKVALYRHVVSVVDK-RVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLY 144 (301)
T ss_dssp HHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CceEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334555555554432 34433333222444444 566888999998887754333322111123356778889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 145 n 145 (301)
T 1xky_A 145 N 145 (301)
T ss_dssp E
T ss_pred e
Confidence 4
No 146
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=62.09 E-value=32 Score=22.96 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecC--Chh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMG--DPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g--~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
...++.+.+.+++.|..+......+ ++. ...++.+...++|-||+.......... .... +. ..+||+++
T Consensus 21 ~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~~-~~-~~iPvV~~ 93 (304)
T 3o1i_D 21 LSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH-----NLKS-WV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-----THHH-HT-TTSCEEEC
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-----HHHH-Hc-CCCCEEEe
Confidence 3445556666667788776655555 533 345555666799999988654332222 2233 34 78999888
No 147
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=61.96 E-value=37 Score=23.52 Aligned_cols=76 Identities=11% Similarity=0.056 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPV 146 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pv 146 (154)
+..+.++.+.+.... .++ +.+-.| +..+.| .+.+++.++|-+.+-.........--+=..-..|...++ .||
T Consensus 65 Er~~v~~~~~~~~~g-rvp--ViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPi 141 (303)
T 2wkj_A 65 EREQVLEIVAEEAKG-KIK--LIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPM 141 (303)
T ss_dssp HHHHHHHHHHHHHTT-TSE--EEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHhCC-CCc--EEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 334455555554432 344 334444 444444 466888999998887754333322111123356777788 999
Q ss_pred EEEc
Q 031713 147 LVVR 150 (154)
Q Consensus 147 liv~ 150 (154)
++..
T Consensus 142 ilYn 145 (303)
T 2wkj_A 142 VVYN 145 (303)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9874
No 148
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=61.36 E-value=13 Score=25.04 Aligned_cols=41 Identities=12% Similarity=0.233 Sum_probs=28.5
Q ss_pred HHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 107 AAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 107 ~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+++.+.|++|+.+...... -..-+..++....+|.+|+-+
T Consensus 59 ~~~~~~pDfvI~isPN~a~P----GP~~ARE~l~~~~iP~IvI~D 99 (283)
T 1qv9_A 59 IAEDFEPDFIVYGGPNPAAP----GPSKAREMLADSEYPAVIIGD 99 (283)
T ss_dssp HHHHHCCSEEEEECSCTTSH----HHHHHHHHHHTSSSCEEEEEE
T ss_pred hhhhcCCCEEEEECCCCCCC----CchHHHHHHHhCCCCEEEEcC
Confidence 34777999999887643322 234667788888899888854
No 149
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=61.30 E-value=25 Score=22.00 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=24.8
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHh----cCCCEEEEe
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEK----HKIQLLIVG 119 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~----~~~dlivlg 119 (154)
+...+++.|..+......+|-.+.|.+..++ .++|+||..
T Consensus 36 l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 3445556688876666666655555554333 378999874
No 150
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=59.24 E-value=12 Score=21.08 Aligned_cols=42 Identities=12% Similarity=0.013 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEec
Q 031713 79 RAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~ 120 (154)
.+.+..+.++..+...+... ..++.-+++.+..++..+|+-.
T Consensus 41 sieelvkkynativvvvvddkewaekairfvkslgaqvliiiy 83 (134)
T 2l69_A 41 SIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIY 83 (134)
T ss_dssp HHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred HHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEE
Confidence 33444444444444444443 3455555666666666555543
No 151
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=59.24 E-value=41 Score=23.23 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
+..+.++.+.+......++ ..+-.| +..+.| .+.+++.++|-+.+-.........--+=..-..|...++.||+
T Consensus 61 Er~~v~~~~~~~~~g~rvp--viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPii 138 (301)
T 3m5v_A 61 EHRTCIEIAVETCKGTKVK--VLAGAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVL 138 (301)
T ss_dssp HHHHHHHHHHHHHTTSSCE--EEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHHhCCCCCe--EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 3445555555544321344 344444 444444 4568889999999987644333321122233668888899999
Q ss_pred EEc
Q 031713 148 VVR 150 (154)
Q Consensus 148 iv~ 150 (154)
+..
T Consensus 139 lYn 141 (301)
T 3m5v_A 139 LYN 141 (301)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 152
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=59.02 E-value=20 Score=20.55 Aligned_cols=42 Identities=14% Similarity=0.046 Sum_probs=29.6
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
|.+++||++....-.+.-+++..-+.++..| -++.+-++...
T Consensus 1 M~mkkIll~Cg~G~sTS~l~~k~~~~~~~~g--i~~~i~a~~~~ 42 (106)
T 1e2b_A 1 MEKKHIYLFSSAGMSTSLLVSKMRAQAEKYE--VPVIIEAFPET 42 (106)
T ss_dssp CCCEEEEEECSSSTTTHHHHHHHHHHHHHSC--CSEEEEEECSS
T ss_pred CCCcEEEEECCCchhHHHHHHHHHHHHHHCC--CCeEEEEecHH
Confidence 6678888888776555578888888888877 45665555433
No 153
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=58.89 E-value=38 Score=22.69 Aligned_cols=47 Identities=15% Similarity=0.044 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh-----------hhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP-----------KNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~-----------~~~i~~~a~~~~~dlivlg~~~ 122 (154)
..+++.+.+.+.+.|++++..-...-+ ...+.+... .+|.||+++.-
T Consensus 51 ~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~--~AD~iI~~sP~ 108 (247)
T 2q62_A 51 RLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSI--WSEGQVWVSPE 108 (247)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHH--HCCEEEEEeCC
Confidence 344445555555567766554333322 456666666 89999999964
No 154
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=58.57 E-value=43 Score=23.20 Aligned_cols=76 Identities=16% Similarity=0.144 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
+..+.++.+.+.... .++ ..+-.| +..++| .+.+++.++|-+.+..........--+=..-..|...++.||+
T Consensus 70 Er~~v~~~~~~~~~g-rvp--viaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPii 146 (304)
T 3cpr_A 70 EKLELLKAVREEVGD-RAK--LIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPIC 146 (304)
T ss_dssp HHHHHHHHHHHHHTT-TSE--EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHHhCC-CCc--EEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 334455555544432 344 334444 455544 5668889999988877543322221111233567788899999
Q ss_pred EEc
Q 031713 148 VVR 150 (154)
Q Consensus 148 iv~ 150 (154)
+..
T Consensus 147 lYn 149 (304)
T 3cpr_A 147 LYD 149 (304)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 155
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=58.49 E-value=34 Score=22.01 Aligned_cols=48 Identities=8% Similarity=-0.119 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCC
Q 031713 73 ALALLGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
...+++.+.+.+++.|.+++..-... +..+.+.+... .+|.||+++.-
T Consensus 32 ~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~ 80 (204)
T 2amj_A 32 NDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL--WADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHH--hCCEEEEECCc
Confidence 35556666666666687777666553 45566666677 89999999853
No 156
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=58.34 E-value=25 Score=22.84 Aligned_cols=35 Identities=6% Similarity=-0.030 Sum_probs=27.8
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEE
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFT 40 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~ 40 (154)
++|++++.++..+-++.+..-.+.+..| .+++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g--~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPN--VETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTT--CEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccC--CEEEEEE
Confidence 3899999999999999988877766435 6887764
No 157
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=57.96 E-value=31 Score=21.41 Aligned_cols=60 Identities=15% Similarity=0.048 Sum_probs=35.1
Q ss_pred cCCeEEEEEecCC--hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 87 HGVVAETMTEMGD--PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 87 ~~~~~~~~v~~g~--~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
.|++++... .++ -...|.+..++.++|+||--....+.-....-|....+..-.-++|+.
T Consensus 56 ~Gl~v~~v~-k~~eGG~p~I~d~I~~geIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~ 117 (152)
T 1b93_A 56 TGMNVNAML-SGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVA 117 (152)
T ss_dssp HCCCCEEEC-CGGGTHHHHHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEE
T ss_pred hCceeEEEE-ecCCCCCchHHHHHHCCCccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEE
Confidence 588876543 332 345799999999999999877621211211223333444444456654
No 158
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=57.85 E-value=32 Score=21.59 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=9.7
Q ss_pred CCCEEEEecCC
Q 031713 112 KIQLLIVGSHS 122 (154)
Q Consensus 112 ~~dlivlg~~~ 122 (154)
++|.||+|+.-
T Consensus 71 ~aD~ii~gsP~ 81 (200)
T 2a5l_A 71 NCAGLALGSPT 81 (200)
T ss_dssp TCSEEEEEEEC
T ss_pred HCCEEEEEcCh
Confidence 89999999864
No 159
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=57.77 E-value=27 Score=21.69 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHh----cCCCEEEEe
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEK----HKIQLLIVG 119 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~----~~~dlivlg 119 (154)
-+...+++.|..+......+|-.+.|.+..++ .++|+||..
T Consensus 25 ~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 25 AIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 34556667788876655556544555444332 279998874
No 160
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=57.72 E-value=26 Score=20.43 Aligned_cols=64 Identities=8% Similarity=0.075 Sum_probs=35.4
Q ss_pred HHHHHhcC-CeEEEEEecCChhhHHHHHHHh-cCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcC
Q 031713 81 KEICAKHG-VVAETMTEMGDPKNVICEAAEK-HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRK 151 (154)
Q Consensus 81 ~~~~~~~~-~~~~~~v~~g~~~~~i~~~a~~-~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~ 151 (154)
...+...| ..+.. ..+..+++....+. ..+|+||+...-.. ... -.+...+-... .+||+++-.
T Consensus 37 ~~~L~~~g~~~v~~---~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~lt~ 103 (146)
T 4dad_A 37 ARLVGDAGRYRVTR---TVGRAAQIVQRTDGLDAFDILMIDGAALD-TAE---LAAIEKLSRLHPGLTCLLVTT 103 (146)
T ss_dssp HHHHHHHCSCEEEE---ECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHH---HHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHhhCCCeEEEE---eCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccH---HHHHHHHHHhCCCCcEEEEeC
Confidence 33344445 44432 34556666666666 79999999875321 221 12334444444 488888754
No 161
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=57.71 E-value=39 Score=22.44 Aligned_cols=42 Identities=17% Similarity=0.151 Sum_probs=28.0
Q ss_pred HHHHHhcCCeEEEEEecC--C---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 81 KEICAKHGVVAETMTEMG--D---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g--~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+++.|+++...-... + ..+++.+..++.++|++|+...+
T Consensus 65 ~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 65 LERARRAGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChh
Confidence 445567788865321111 1 14678888999999999998664
No 162
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=57.59 E-value=27 Score=20.61 Aligned_cols=67 Identities=7% Similarity=0.081 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcCC
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRKP 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~~ 152 (154)
+.+...+...|..+. ...+.. ..++..++..+|+|++...-.. ...+ .+...+-... .+||+++-..
T Consensus 28 ~~l~~~L~~~g~~v~---~~~~~~-~a~~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 28 QRLQQLLSPLPYTLH---FARDAT-QALQLLASREVDLVISAAHLPQ-MDGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHHHHTTSSCEEE---EESSHH-HHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred HHHHHHhcccCcEEE---EECCHH-HHHHHHHcCCCCEEEEeCCCCc-CcHH---HHHHHHHhHCCCCeEEEEECC
Confidence 344555555564432 233444 4445566778999999976322 2211 2334444433 4888887543
No 163
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=57.42 E-value=16 Score=23.84 Aligned_cols=38 Identities=16% Similarity=0.031 Sum_probs=27.6
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
.-++|++.+.++..+-++.+..-.|.+..| .+++++--
T Consensus 18 ~~k~IllgvTGsiaa~k~~~lv~~L~~~~g--~~V~vv~T 55 (206)
T 1qzu_A 18 RKFHVLVGVTGSVAALKLPLLVSKLLDIPG--LEVAVVTT 55 (206)
T ss_dssp SSEEEEEEECSSGGGGTHHHHHHHHC---C--EEEEEEEC
T ss_pred CCCEEEEEEeChHHHHHHHHHHHHHhcccC--CEEEEEEC
Confidence 347999999999999888888877765245 67776643
No 164
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=57.26 E-value=49 Score=23.48 Aligned_cols=29 Identities=10% Similarity=-0.040 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEecc
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARP 43 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~ 43 (154)
...++..+++|+++|+..+ .+|+++|=..
T Consensus 153 ~~~~eRiar~AFe~A~~rr--kkVt~v~KaN 181 (337)
T 1w0d_A 153 AFGVRRVVADAFERARRRR--KHLTLVHKTN 181 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTT--SEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHcC--CeEEEEECCc
Confidence 3557889999999999875 6888887533
No 165
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=57.14 E-value=26 Score=23.28 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhH
Q 031713 77 LGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSN 136 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~ 136 (154)
+.++.+.+++.|..+-..+-.+.+.+.+..+.. .+|+|.+-+...++....|.....+
T Consensus 95 ~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV~pGfggQ~f~~~~l~ 152 (231)
T 3ctl_A 95 AFRLIDEIRRHDMKVGLILNPETPVEAMKYYIH--KADKITVMTVDPGFAGQPFIPEMLD 152 (231)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCTTCSSCCCCTTHHH
T ss_pred HHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHh--cCCEEEEeeeccCcCCccccHHHHH
Confidence 456666777788887776655677777777777 7888866554444334344444333
No 166
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=56.97 E-value=37 Score=22.03 Aligned_cols=42 Identities=14% Similarity=0.185 Sum_probs=24.8
Q ss_pred HHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEec
Q 031713 77 LGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~ 120 (154)
++.+.+.++..|.++...-......+.+.+..+ ++|.|+++-
T Consensus 46 ~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~--~ad~I~l~G 87 (206)
T 3l4e_A 46 VEAGKKALESLGLLVEELDIATESLGEITTKLR--KNDFIYVTG 87 (206)
T ss_dssp HHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH--HSSEEEECC
T ss_pred HHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH--hCCEEEECC
Confidence 455666666778765442222223444555566 789999975
No 167
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=56.81 E-value=27 Score=20.30 Aligned_cols=69 Identities=9% Similarity=0.098 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcCC
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRKP 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~~ 152 (154)
+.+...+...|..+.... ..+. ....+..++..+|+|++...-.. ... -.....+-. ...+|++++-..
T Consensus 19 ~~l~~~L~~~~~~~~v~~-~~~~-~~a~~~l~~~~~dlii~D~~l~~-~~g---~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 19 ALIRRVLDRKDIHCQLEF-VDNG-AKALYQVQQAKYDLIILDIGLPI-ANG---FEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHHHTTCCEEEEE-ESSH-HHHHHHHTTCCCSEEEECTTCGG-GCH---HHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHHhcCCCeeEEE-ECCH-HHHHHHhhcCCCCEEEEeCCCCC-CCH---HHHHHHHHhcccccCCCEEEEeCC
Confidence 344455555565533322 2333 44455667788999999875321 111 123344443 234899888543
No 168
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=56.52 E-value=27 Score=20.24 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+...+...|..+. ...+..+++....+...+|+|++...-......+ .+...+-....+|++++-.
T Consensus 20 ~l~~~L~~~g~~v~---~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~ 86 (140)
T 3h5i_A 20 TIANILNKYGYTVE---IALTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTA 86 (140)
T ss_dssp HHHHHHHHTTCEEE---EESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEES
T ss_pred HHHHHHHHcCCEEE---EecChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEEC
Confidence 34444455565433 2344555544444347899999997632112221 2334444445689988854
No 169
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=56.50 E-value=50 Score=23.41 Aligned_cols=30 Identities=3% Similarity=-0.178 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
...++..+++|+++|+..+ .+|+++|=..-
T Consensus 143 ~~~~eRiar~AF~~A~~rr--kkvt~v~KaNv 172 (336)
T 1wpw_A 143 RFASERIAKVGLNFALRRR--KKVTCVHKANV 172 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHHhC--CeEEEEECCcc
Confidence 3567889999999999875 68888875443
No 170
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=56.08 E-value=48 Score=23.07 Aligned_cols=77 Identities=12% Similarity=0.010 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+-. +..++| .+.+++.++|-+.+...-......--+=..-..|...++.||++.
T Consensus 66 Er~~v~~~~v~~~~g-rvpViaGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 143 (316)
T 3e96_A 66 EAKEEVRRTVEYVHG-RALVVAGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVY 143 (316)
T ss_dssp HHHHHHHHHHHHHTT-SSEEEEEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 334455555554432 3554444432 554444 456888999999987654332222111123356777788999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 144 n 144 (316)
T 3e96_A 144 F 144 (316)
T ss_dssp E
T ss_pred e
Confidence 4
No 171
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=55.74 E-value=15 Score=25.64 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=40.6
Q ss_pred HHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEE
Q 031713 83 ICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLV 148 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvli 148 (154)
.+++.+.-+----..+ ...+++++.|++.+..+|+-.+.+...+....+......+.++..+||.+
T Consensus 21 ~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaL 87 (306)
T 3pm6_A 21 FARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITL 87 (306)
T ss_dssp HHHHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEE
Confidence 3333444443334445 78999999999999999987665422111111223345567788899865
No 172
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=55.54 E-value=43 Score=22.28 Aligned_cols=70 Identities=9% Similarity=0.013 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+++.|..+......++.. ..+++.....++|-||+..... . ...-..+....+|++++-.
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~------~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 24 AEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG--E------HDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS--C------CHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC--C------hHHHHHhhccCCCEEEEec
Confidence 4556667777777888776655444543 3466667778999999865432 1 1123345667899988743
No 173
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=55.22 E-value=59 Score=23.82 Aligned_cols=27 Identities=4% Similarity=-0.139 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
+..+...|..+++..| .++.++-..+.
T Consensus 114 TT~a~~LA~~l~~~~G--~kVllvd~D~~ 140 (433)
T 2xxa_A 114 TTSVGKLGKFLREKHK--KKVLVVSADVY 140 (433)
T ss_dssp HHHHHHHHHHHHHTSC--CCEEEEECCCS
T ss_pred HHHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 5556677777776535 57777766544
No 174
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=55.05 E-value=24 Score=22.52 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCC---------------------hhhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGD---------------------PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~---------------------~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
+++.+.+.+.+.+.|.+++..-.... ....+.+... .+|.||+|+.-
T Consensus 21 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~--~aD~ii~gsP~ 88 (211)
T 1ydg_A 21 YAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLE--WAEAIVFSSPT 88 (211)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHH--HCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHH--HCCEEEEEcCc
Confidence 34455555556666777665544331 1123444455 79999999864
No 175
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=54.99 E-value=24 Score=23.78 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHH
Q 031713 77 LGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNY 137 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~ 137 (154)
+.+..+.+++.|.++-..+..+.+.+.+..+.. ..|+|.+.+-..+.....|.....++
T Consensus 123 ~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~--~vD~VlvMsV~PGfgGQ~fi~~~l~K 181 (246)
T 3inp_A 123 IDRSLQLIKSFGIQAGLALNPATGIDCLKYVES--NIDRVLIMSVNPGFGGQKFIPAMLDK 181 (246)
T ss_dssp HHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGG--GCSEEEEECSCTTC--CCCCTTHHHH
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHh--cCCEEEEeeecCCCCCcccchHHHHH
Confidence 345556667788887666655677777777777 68888776654443333454444443
No 176
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=54.80 E-value=22 Score=21.55 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=25.3
Q ss_pred cCCeEEEEEecCC--hhhHHHHHHHhcCCCEEEEecC
Q 031713 87 HGVVAETMTEMGD--PKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 87 ~~~~~~~~v~~g~--~~~~i~~~a~~~~~dlivlg~~ 121 (154)
.|++++... .++ -...|.+..++.++|+||--..
T Consensus 48 ~Gl~v~~v~-k~~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 48 TGLTVEKLL-SGPLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HCCCCEECS-CGGGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred hCceEEEEE-ecCCCCcchHHHHHHCCCccEEEEccC
Confidence 488876533 332 3457999999999999998776
No 177
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=54.26 E-value=28 Score=19.74 Aligned_cols=66 Identities=14% Similarity=0.070 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcCC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRKP 152 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~~ 152 (154)
.+...+...|..+.. ..+. +...+..++..+|++++...-.. ..+ -.....+-... .+|++++-..
T Consensus 22 ~l~~~L~~~g~~v~~---~~~~-~~a~~~l~~~~~dlvi~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 22 LLDSWFSSLGATTVL---AADG-VDALELLGGFTPDLMICDIAMPR-MNG---LKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHHHHHHHTTCEEEE---ESCH-HHHHHHHTTCCCSEEEECCC------C---HHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHHHHhCCceEEE---eCCH-HHHHHHHhcCCCCEEEEecCCCC-CCH---HHHHHHHHhcCCCCCEEEEEcC
Confidence 344445555655432 3343 44455667788999999875221 111 12334444443 4888887543
No 178
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=53.71 E-value=25 Score=22.15 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=27.1
Q ss_pred CCCcEEEEEecC-CchHHHHHHHHHHHcccCCCCCeEEEEEecc
Q 031713 1 MDKKKVMVAIDE-SECRHYALQWALENLGDAISKSDLIIFTARP 43 (154)
Q Consensus 1 m~~~~iLv~vd~-~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~ 43 (154)
|++++||+.... +.++..+.+...+.+...+ .++.++.+.+
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~~g--~~v~~~~l~~ 44 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGG--FEARVRTVPA 44 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTT--CEEEEEBCCC
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhhCC--CEEEEEEhhh
Confidence 666788877644 3456677777777776655 6888888755
No 179
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=53.63 E-value=56 Score=23.08 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
+..+.+.+.+.+.|++++..-........+..... .+|.+|+|+..
T Consensus 267 ~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~--~~d~ii~g~p~ 312 (398)
T 1ycg_A 267 KMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEIL--DARAVLVGSPT 312 (398)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHH--HCSEEEEECCC
T ss_pred HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH--HCCEEEEECCc
Confidence 34444555555567766554444444455555555 79999999864
No 180
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=53.44 E-value=65 Score=23.75 Aligned_cols=69 Identities=13% Similarity=0.242 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhh-HHHH---HHHhcCCCEEE-EecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKN-VICE---AAEKHKIQLLI-VGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~-~i~~---~a~~~~~dliv-lg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
...+++.+.+++.|+++...+..|++.. .+.+ .+++ ++|+|| +|-. + ...++..+......|++.|
T Consensus 105 ~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGG--S------viD~AK~iA~~~giP~I~I 175 (450)
T 1ta9_A 105 ICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGG--K------TMDSAKYIAHSMNLPSIIC 175 (450)
T ss_dssp HTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESH--H------HHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCc--H------HHHHHHHHHHhcCCCEEEE
Confidence 3567777777778888755555675444 3333 3445 788877 5532 1 2234444444567899999
Q ss_pred cCC
Q 031713 150 RKP 152 (154)
Q Consensus 150 ~~~ 152 (154)
|-.
T Consensus 176 PTT 178 (450)
T 1ta9_A 176 PTT 178 (450)
T ss_dssp ESS
T ss_pred eCC
Confidence 854
No 181
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=53.28 E-value=13 Score=25.77 Aligned_cols=63 Identities=8% Similarity=0.106 Sum_probs=41.5
Q ss_pred cCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCccc-ccccchhHHHhhcCCCcEEEE
Q 031713 87 HGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQR-AFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 87 ~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~-~~~gs~~~~l~~~~~~pvliv 149 (154)
.+.-+----..+ ...+++++.|++.+..+|+-.+.+...... ..+......+.++.++||.+-
T Consensus 16 ~~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValH 80 (286)
T 1gvf_A 16 NGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEE
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 343333333344 789999999999999999887765322111 234466777888889998763
No 182
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=53.15 E-value=23 Score=19.90 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=9.3
Q ss_pred HHHHHHHhcCCCEEEEecC
Q 031713 103 VICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~ 121 (154)
.+.+..+..++.++|+...
T Consensus 22 ~v~kai~~gka~lViiA~D 40 (99)
T 3j21_Z 22 ETIRLAKTGGAKLIIVAKN 40 (99)
T ss_dssp HHHHHHHHTCCSEEEEECC
T ss_pred HHHHHHHcCCccEEEEeCC
Confidence 3344444455555555543
No 183
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=53.09 E-value=35 Score=21.57 Aligned_cols=42 Identities=14% Similarity=0.002 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHh--cCCCEEEEe
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEK--HKIQLLIVG 119 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~--~~~dlivlg 119 (154)
..+...+.+.|+.+......+|-.+.|.+..++ .++|+||..
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 345566667899877766666554555543322 158998875
No 184
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=53.01 E-value=55 Score=22.80 Aligned_cols=78 Identities=12% Similarity=-0.033 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+..........--+=..-..|...++.||++.
T Consensus 78 Er~~v~~~~v~~~~g-rvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 156 (315)
T 3na8_A 78 EWDEVVDFTLKTVAH-RVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLY 156 (315)
T ss_dssp HHHHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 334455555554432 34443333323444444 456888999999998764333332212223467888889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 157 n 157 (315)
T 3na8_A 157 N 157 (315)
T ss_dssp E
T ss_pred e
Confidence 4
No 185
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=52.63 E-value=29 Score=19.54 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
+...++..|..+. ...+..+ .++..++..+|++++...-. ...++ .+...+-.. ..+|++++-.
T Consensus 18 l~~~l~~~g~~v~---~~~~~~~-al~~l~~~~~dlvllD~~~p-~~~g~---~~~~~l~~~~~~~~~pii~~s~ 84 (122)
T 3gl9_A 18 VSFNLKKEGYEVI---EAENGQI-ALEKLSEFTPDLIVLXIMMP-VMDGF---TVLKKLQEKEEWKRIPVIVLTA 84 (122)
T ss_dssp HHHHHHHTTCEEE---EESSHHH-HHHHHTTBCCSEEEECSCCS-SSCHH---HHHHHHHTSTTTTTSCEEEEES
T ss_pred HHHHHHHCCcEEE---EeCCHHH-HHHHHHhcCCCEEEEeccCC-CCcHH---HHHHHHHhcccccCCCEEEEec
Confidence 3344445565442 2334444 45566778999999987522 22221 233444333 3489888754
No 186
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=52.49 E-value=49 Score=22.07 Aligned_cols=35 Identities=6% Similarity=-0.017 Sum_probs=26.5
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
.+|+|++.+...|..++..+.+.. .++.++|+...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~------~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR------PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS------TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC------CCCeEEEecCC
Confidence 479999999999988887776553 25778887654
No 187
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=52.44 E-value=43 Score=21.89 Aligned_cols=67 Identities=9% Similarity=0.053 Sum_probs=39.3
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEE--ecCCCCCcccccccchhHHHhhcC---CCcEEEE
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIV--GSHSRGPIQRAFLGSVSNYCVHNA---KCPVLVV 149 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivl--g~~~~~~~~~~~~gs~~~~l~~~~---~~pvliv 149 (154)
+...++..|.++.. .-..-|.+.+++.+++.++|+|.+ ..--.... .....+.+.+-... ++||++=
T Consensus 112 v~~~l~~~G~~Vi~-LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~--~~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 112 VTTMLGANGFQIVD-LGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSM--LGQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHHTSCEEEE-CCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHH--THHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHHCCCeEEE-cCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcH--HHHHHHHHHHHHcCCCCCCEEEEE
Confidence 34455666755422 222358999999999999999999 54322111 12333444444442 3677663
No 188
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=52.28 E-value=46 Score=22.07 Aligned_cols=43 Identities=16% Similarity=0.116 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEe-cC
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVG-SH 121 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg-~~ 121 (154)
+++++...+.|..+...+.-|--.+.+... .+.++|.+|+| +.
T Consensus 155 ~~lr~~~~~~~~~~~I~VdGGI~~~~~~~~-~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 155 AELKAWREREGLEYEIEVDGSCNQATYEKL-MAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHTCCCEEEEESCCSTTTHHHH-HHHTCCEEEECTTT
T ss_pred HHHHHHHhccCCCceEEEECCcCHHHHHHH-HHcCCCEEEEccHH
Confidence 344455544566666666555334444443 44589999999 53
No 189
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=52.18 E-value=29 Score=19.42 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=35.8
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+...+...|..+.. ..+.. +.++..++..+|++++...-.+ ..++ .....+-...++|++++-.
T Consensus 18 l~~~L~~~g~~v~~---~~~~~-~al~~~~~~~~dlii~D~~~p~-~~g~---~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 18 LEFNLRKEGYEVHC---AHDGN-EAVEMVEELQPDLILLDIMLPN-KDGV---EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp HHHHHHHTTCEEEE---ESSHH-HHHHHHHTTCCSEEEEETTSTT-THHH---HHHHHHHTTCCSCEEEEEE
T ss_pred HHHHHHhCCEEEEE---eCCHH-HHHHHHhhCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCEEEEEC
Confidence 33444455654432 33444 4455667789999999875322 2221 2344454555689888743
No 190
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=52.13 E-value=16 Score=23.57 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=27.8
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEE
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFT 40 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~ 40 (154)
-++|++++.++..+-++.+..-.+.+ .| .+++++-
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g--~~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-FF--KEIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-TS--SEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CC--CEEEEEE
Confidence 47999999999998888888777755 45 6887764
No 191
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=51.89 E-value=51 Score=22.09 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEEec-C-------Ch--hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCC
Q 031713 75 ALLGRAKEICAKHGVVAETMTEM-G-------DP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKC 144 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~-g-------~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~ 144 (154)
+...++.+.+++.|+++...+.. | ++ ...+.+.+.+.++|.|.++.. ..+ .....+...+++
T Consensus 132 ~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~i 203 (273)
T 2qjg_A 132 RDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCPA 203 (273)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCCC
Confidence 44556666677778876554311 1 11 233346788899999888731 111 233566777789
Q ss_pred cEEEEc
Q 031713 145 PVLVVR 150 (154)
Q Consensus 145 pvliv~ 150 (154)
||+..-
T Consensus 204 pvva~G 209 (273)
T 2qjg_A 204 PVVVAG 209 (273)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 988763
No 192
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=51.88 E-value=48 Score=21.83 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+.+.|..+......++.. ..+++.....++|-||+..... . .. -..+...++|++++-.
T Consensus 23 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~-----~~-~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 23 TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P-----QT-VQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H-----HH-HHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H-----HH-HHHHHHCCCCEEEEec
Confidence 4556677777778888776655445543 3566667778999999876432 1 12 2345667899988843
No 193
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=51.85 E-value=66 Score=23.37 Aligned_cols=26 Identities=12% Similarity=-0.084 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
..++..+++|+++|+... .+|+++|=
T Consensus 186 ~~~eRIar~AFe~A~~rr--kkVT~v~K 211 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRK--KKVTSVDK 211 (390)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHhHHHHHHHHHHHHcC--CceEEEEC
Confidence 467889999999998865 78888874
No 194
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=51.72 E-value=47 Score=21.65 Aligned_cols=42 Identities=14% Similarity=0.092 Sum_probs=27.9
Q ss_pred HHHHHhcCCeEEEEEec--CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 81 KEICAKHGVVAETMTEM--GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~--g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+++.|+++...-.. .+ ..+++.+..++.++|++|+...+
T Consensus 46 ~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 46 IERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh
Confidence 34556778886532111 11 14578888999999999998654
No 195
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=51.06 E-value=28 Score=23.35 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=27.7
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
..+++...+.++|+|.+|-...-...+.+ .....+- +.+.|+++.+-
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~~~--~~v~~ir-~~~~Pivlm~y 69 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDNVL--RMMSKVR-RFLVPCVLEVS 69 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHHHH--HHHHHHT-TSSSCEEEECS
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHHHH--HHHHHhh-CcCCCEEEecC
Confidence 45677888899999999974222222211 2334443 36789888653
No 196
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=51.02 E-value=46 Score=21.29 Aligned_cols=42 Identities=14% Similarity=0.181 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHh---cCCCEEEEe
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEK---HKIQLLIVG 119 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~---~~~dlivlg 119 (154)
.-+...+++.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 344556667788876655556555555544332 479998875
No 197
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=50.96 E-value=36 Score=20.11 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=35.7
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
.+...+...|..+. ...+. +..++..++..+|+|++...-.. ..++ .+...+-.. ..+|++++-.
T Consensus 22 ~l~~~L~~~g~~v~---~~~~~-~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~ 89 (154)
T 3gt7_A 22 HLKHILEETGYQTE---HVRNG-REAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTI 89 (154)
T ss_dssp HHHHHHHTTTCEEE---EESSH-HHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEEC
T ss_pred HHHHHHHHCCCEEE---EeCCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEEC
Confidence 34444555565432 22333 44556667789999999975322 2211 233444433 3588888754
No 198
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=50.94 E-value=15 Score=23.73 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=38.1
Q ss_pred HHhcCCeEEEEEecCChhhHHHHHHHhcC--CCEEEEecCC---CCCcccccccchhHHHh-hcCCCcEEEEcC
Q 031713 84 CAKHGVVAETMTEMGDPKNVICEAAEKHK--IQLLIVGSHS---RGPIQRAFLGSVSNYCV-HNAKCPVLVVRK 151 (154)
Q Consensus 84 ~~~~~~~~~~~v~~g~~~~~i~~~a~~~~--~dlivlg~~~---~~~~~~~~~gs~~~~l~-~~~~~pvliv~~ 151 (154)
+.+.|++++... ...+....++.+ +|++++|+.+ .+..-. ..|+..-.++ ++..+|++++-+
T Consensus 26 L~~~gI~vtlI~-----Dsa~~~~m~~~~~~Vd~VivGAd~v~~nG~v~n-kiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 26 LVYDKIPSTLIT-----DSSIAYRIRTSPIPIKAAFVGADRIVRNGDTAN-KIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp HHHHTCCBEEBC-----GGGHHHHHHHCSSCEEEEEECCSEECTTSCEEE-ETTHHHHHHHHHHHTCEEEEECC
T ss_pred HHHcCCCEEEEe-----chHHHHHHHhCCCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEecc
Confidence 345588876533 334455556566 9999999975 222222 3555544444 566799999843
No 199
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=50.58 E-value=60 Score=22.48 Aligned_cols=78 Identities=14% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..+.| .+.+++.++|-+++..........--+=..-..|...++.||++.
T Consensus 69 Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 147 (304)
T 3l21_A 69 EKIELLRAVLEAVGD-RARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLY 147 (304)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334455555554432 34443333223444444 457888999999998754333322111123367888889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 148 n 148 (304)
T 3l21_A 148 D 148 (304)
T ss_dssp E
T ss_pred e
Confidence 4
No 200
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=50.54 E-value=44 Score=20.93 Aligned_cols=41 Identities=7% Similarity=0.158 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHH----HhcCCCEEEEe
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAA----EKHKIQLLIVG 119 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a----~~~~~dlivlg 119 (154)
-+...+.+.|.++......+|-.+.|.+.. ++.++|+||..
T Consensus 32 ~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 32 YLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 345556667888766555565444444433 32259998874
No 201
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=50.21 E-value=50 Score=21.54 Aligned_cols=84 Identities=8% Similarity=0.067 Sum_probs=50.5
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEI 83 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (154)
+||.|-+.++.+...++-.++. ....+ .++.++-..++.. ...+.
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~-~~~~~--~~i~~Vis~~~~~--------------------------------~~~~~ 45 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACK-TNKIK--GTVRAVFSNKADA--------------------------------FGLER 45 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHH-TTSSS--SEEEEEEESCTTC--------------------------------HHHHH
T ss_pred CEEEEEEECCcHHHHHHHHHHH-cCCCC--ceEEEEEeCCCch--------------------------------HHHHH
Confidence 3788888888877666655543 22222 5665554433211 01455
Q ss_pred HHhcCCeEEEEEec--CC---hhhHHHHHHHhcCCCEEEEecCC
Q 031713 84 CAKHGVVAETMTEM--GD---PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 84 ~~~~~~~~~~~v~~--g~---~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
+++.|+++...-.. .+ ...++.+..++.++|++|+...+
T Consensus 46 A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 46 ARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHTTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred HHHcCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 56778886542111 11 14678889999999999998654
No 202
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=50.19 E-value=59 Score=22.33 Aligned_cols=77 Identities=10% Similarity=-0.062 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCC-cccccccchhHHHhhcC---CCcE
Q 031713 73 ALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGP-IQRAFLGSVSNYCVHNA---KCPV 146 (154)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~-~~~~~~gs~~~~l~~~~---~~pv 146 (154)
..+.++.+.+.... .+++-.-+...+..+.| .+.+++.++|-+.+....... ...--+=..-..|...+ +.||
T Consensus 58 r~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPi 136 (294)
T 3b4u_A 58 RQAILSSFIAAGIA-PSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDI 136 (294)
T ss_dssp HHHHHHHHHHTTCC-GGGEEEEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHHHHHHhCC-CCcEEEeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcE
Confidence 34444444443321 23433333332455444 567888999999888764433 22211112335677777 7999
Q ss_pred EEEc
Q 031713 147 LVVR 150 (154)
Q Consensus 147 liv~ 150 (154)
++..
T Consensus 137 ilYn 140 (294)
T 3b4u_A 137 LVYN 140 (294)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 203
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=49.42 E-value=25 Score=25.10 Aligned_cols=70 Identities=7% Similarity=-0.020 Sum_probs=42.6
Q ss_pred HHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCc------cc-----ccccchhHHHhhcCCCcEE
Q 031713 80 AKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPI------QR-----AFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~------~~-----~~~gs~~~~l~~~~~~pvl 147 (154)
+.+.+++.+.-+--.-..+ ...+++++.|++.+..+|+-.+.+...+ .. ..+...+..+.++.++||.
T Consensus 12 ll~~A~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVa 91 (349)
T 3elf_A 12 MLGQAKQNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVA 91 (349)
T ss_dssp HHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEE
T ss_pred HHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 3334444454443334445 7899999999999999998766432111 11 0123344567788889987
Q ss_pred EE
Q 031713 148 VV 149 (154)
Q Consensus 148 iv 149 (154)
+-
T Consensus 92 LH 93 (349)
T 3elf_A 92 LH 93 (349)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 204
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=49.35 E-value=36 Score=19.57 Aligned_cols=65 Identities=8% Similarity=0.046 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh--c-CCCcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH--N-AKCPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~--~-~~~pvliv~~ 151 (154)
.+...+...|..+. ...+ .+...+..++..+|++++...-.. ... -.....+-. . ..+||+++-.
T Consensus 22 ~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 22 AVKTILSDAGFHII---SADS-GGQCIDLLKKGFSGVVLLDIMMPG-MDG---WDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp HHHHHHHHTTCEEE---EESS-HHHHHHHHHTCCCEEEEEESCCSS-SCH---HHHHHHHHHTTCCTTEEEEEEEC
T ss_pred HHHHHHHHCCeEEE---EeCC-HHHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhhcccCCCCEEEEEC
Confidence 34444444565432 2233 445556667778999999975322 221 123444444 2 3488888743
No 205
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=49.22 E-value=30 Score=20.98 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=34.8
Q ss_pred HHhcCCeEEEEEec--C-C--hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 84 CAKHGVVAETMTEM--G-D--PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 84 ~~~~~~~~~~~v~~--g-~--~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
+++.|++++..... | + ....|.+..++.++|+||--..+.. ...--|....+..-...+|++
T Consensus 63 L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~--~~~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 63 LNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNT--KFVHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCG--GGHHHHHHHHHHHHHTTCCEE
T ss_pred HHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCC--cCCccHHHHHHHHHHhCCCeE
Confidence 34568877654322 2 2 0046999999999999998765421 111223333444444466665
No 206
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.1.19.4
Probab=49.18 E-value=79 Score=23.51 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.6
Q ss_pred EEEEEecCChhhHHHH--HHHhcCCCEEEEecC-CCCCccccccc
Q 031713 91 AETMTEMGDPKNVICE--AAEKHKIQLLIVGSH-SRGPIQRAFLG 132 (154)
Q Consensus 91 ~~~~v~~g~~~~~i~~--~a~~~~~dlivlg~~-~~~~~~~~~~g 132 (154)
+.+.+-+|+..+.|.+ .|..+++|.|.+-+. +.+.+.....|
T Consensus 153 iy~ivAtG~i~eDi~qa~aAA~~GAD~IaVIRttgQSllDyvp~G 197 (516)
T 1xrs_A 153 LYVIVATGNIYEDITQAVAAAKQGADVIAVIRTTGQSLLDYVPYG 197 (516)
T ss_dssp EEEEECCSCHHHHHHHHHHHHHTTCSEEEECCCTTGGGCSSCCCS
T ss_pred EEEEEecCchHHHHHHHHHHHHcCCCEEEEecccchhhhcccCCC
Confidence 6677778999999987 488999999988654 33333333344
No 207
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=49.01 E-value=41 Score=21.47 Aligned_cols=60 Identities=17% Similarity=0.081 Sum_probs=35.2
Q ss_pred cCCeEEEEEecCC--hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEE
Q 031713 87 HGVVAETMTEMGD--PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVL 147 (154)
Q Consensus 87 ~~~~~~~~v~~g~--~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvl 147 (154)
.|++++... .++ -...|.+.+++.++|+||--....+.-....-|....++.-.-++|++
T Consensus 72 ~Gl~v~~v~-k~~eGG~pqI~d~I~~geIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~ 133 (178)
T 1vmd_A 72 LGLKVHRLK-SGPLGGDQQIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVA 133 (178)
T ss_dssp HCCCCEECS-CGGGTHHHHHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEE
T ss_pred hCceeEEEe-ecCCCCCchHHHHHHCCCccEEEEccCccCCCcccccHHHHHHHHHHcCCCEE
Confidence 588876532 332 345799999999999999877621211111223334444444556654
No 208
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=48.95 E-value=50 Score=21.16 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=28.3
Q ss_pred EEEecCChhhHHHHHHH-hcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 93 TMTEMGDPKNVICEAAE-KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 93 ~~v~~g~~~~~i~~~a~-~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
..+..|+..+++...-+ ..++|.|| .+ |.++..|-++.+.||+-++-+
T Consensus 31 i~i~~~~l~~~v~~a~~~~~~~dVII-SR-----------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 31 PITKTASLTRASKIAFGLQDEVDAII-SR-----------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp EEEEECCHHHHHHHHHHHTTTCSEEE-EE-----------HHHHHHHHTTCSSCEEEECCC
T ss_pred eEEEECCHHHHHHHHHHhcCCCeEEE-EC-----------ChHHHHHHHhCCCCEEEEcCC
Confidence 33556665554433222 56788444 32 456666767778999988643
No 209
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=48.54 E-value=63 Score=22.14 Aligned_cols=98 Identities=9% Similarity=0.052 Sum_probs=65.8
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHccc---CCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGD---AISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGR 79 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~---~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (154)
++.|=|+|.++.+...|+..|..+.+. .. ..++.+.|-.+...... ++-... ++....++.
T Consensus 131 ~~~vrvaVEGNSsQdsAVaIA~~i~~~~~~~~-~~~~~FyH~~d~~~v~~---PfylL~------------~eK~~Afe~ 194 (279)
T 3n4p_A 131 LDELRIAVEGNTNQAAAVRIACLIRQSVQSST-LIRVLFYHTPDQNHIEQ---PFYLMG------------RDKALAVEQ 194 (279)
T ss_dssp CCEEEEEEBCSSCHHHHHHHHHHHHHHHHHHC-CCEEEEECEEETTTEEE---SCBCCS------------THHHHHHHH
T ss_pred cceEEEEEecCccHHHHHHHHHHHHHHhhhcc-cccEEEEecCCCccccC---Cchhhc------------cchHHHHHH
Confidence 678889999999999999999887765 32 13589999888763222 111111 223455677
Q ss_pred HHHHHHhcCCeEEEEEec-----C-ChhhHHHHHHHhcCCCEEEE
Q 031713 80 AKEICAKHGVVAETMTEM-----G-DPKNVICEAAEKHKIQLLIV 118 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~-----g-~~~~~i~~~a~~~~~dlivl 118 (154)
+...+++-.+.....++. + ||.+-+++..+ ++.-+++
T Consensus 195 FI~~fNSG~i~ASQelVS~TIkLs~DPVeYL~eQi~--ni~~~~~ 237 (279)
T 3n4p_A 195 FISRFNSGYIKASQELVSYTIKLSHDPIEYLLEQIQ--NLHRVTL 237 (279)
T ss_dssp HHHHHHTTCEEEEEEEECSSSBTTBCHHHHHHHHHH--TCCC---
T ss_pred HHHHhcCCceEEeeeeeeeeEEeccChHHHHHHHHh--hcEEEec
Confidence 788888777776655544 4 89999999999 6665665
No 210
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=48.33 E-value=73 Score=22.87 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=21.5
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEec
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTAR 42 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v~ 42 (154)
..++..+++|+++|+..+- .+|+++|=.
T Consensus 166 ~~~eRIar~AFe~A~~r~~-kkVt~v~Ka 193 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRER-KHVTSATKS 193 (364)
T ss_dssp HHHHHHHHHHHHHHHHSSS-CEEEEEECT
T ss_pred HHHHHHHHHHHHHHHhcCC-CeEEEEECc
Confidence 5688899999999998751 368888743
No 211
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=48.32 E-value=56 Score=21.48 Aligned_cols=47 Identities=15% Similarity=-0.015 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
..+++.+.+.+++.|.+++..-... ...+...+... .+|.||++..-
T Consensus 46 ~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~--~aD~iv~~~P~ 93 (218)
T 3rpe_A 46 LTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYL--WADTIIYQMPA 93 (218)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH--hCCEEEEECCh
Confidence 3455566666666787777655553 33444555555 89999999853
No 212
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=47.49 E-value=72 Score=22.57 Aligned_cols=62 Identities=10% Similarity=0.158 Sum_probs=37.0
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC---CCCcccccccchhHHHh-hcCCCcEEEEcC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS---RGPIQRAFLGSVSNYCV-HNAKCPVLVVRK 151 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~---~~~~~~~~~gs~~~~l~-~~~~~pvliv~~ 151 (154)
..+.+.|++++.... +..-.++ .++|++|+|+.+ .+..-. -.|+..-.++ ++.++|++++-+
T Consensus 186 ~eL~~~GI~vtlI~D--sa~~~~M-----~~Vd~VivGAd~V~anG~v~N-KiGT~~lAl~Ak~~~vPfyV~a~ 251 (338)
T 3a11_A 186 KELASYGIPVIYVVD--SAARHYM-----KMTDKVVMGADSITVNGAVIN-KIGTALIALTAKEHRVWTMIAAE 251 (338)
T ss_dssp HHHHHTTCCEEEECG--GGTTTTG-----GGCSEEEECCSEECTTSCEEE-ETTHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHhCCCCEEEEeh--HHHHHHH-----HhCCEEEECccEEecCCCEee-cccHHHHHHHHHHcCCCEEEecc
Confidence 334456888866442 2222222 489999999975 222222 3555544444 666799999843
No 213
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=47.42 E-value=76 Score=22.81 Aligned_cols=29 Identities=7% Similarity=-0.071 Sum_probs=23.0
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
..++..+++|+++|+... .+|+++|=..-
T Consensus 174 ~~~eRIar~AFe~A~~rr--kkVt~v~KaNv 202 (366)
T 1vlc_A 174 KTVERIARTAFEIAKNRR--KKVTSVDKANV 202 (366)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEECCcc
Confidence 557889999999999875 68888875443
No 214
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=47.31 E-value=58 Score=22.09 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhcCCeEE--EEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 73 ALALLGRAKEICAKHGVVAE--TMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~--~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
.++++..+.......+.+.. ..+..| ...+...++...+.|+|+...- +...- -.....+.+...+|..+|+
T Consensus 101 k~rl~~~a~~ka~gk~~~~k~p~~lk~G--vneVtKaIekgKAqLVVIA~Dv-dPiel---v~~LPaLCee~~VPY~~V~ 174 (255)
T 4a17_F 101 KQRLVAQAEAKKDGKQVETKKPIVLKYG--LNHITTLIENKQAKLVVIAHDV-DPIEL---VIFLPQLCRKNDVPFAFVK 174 (255)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCCCCEEEC--HHHHHHHHHTSCCSEEEEESCC-SSTHH---HHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHhcCCCCCCCCCceeecc--hHHHHHHHHcCCceEEEEeCCC-ChHHH---HHHHHHHHHHcCCCEEEEC
Confidence 34455555555544443321 122233 5677888888999999998653 22221 1122456777788888886
Q ss_pred C
Q 031713 151 K 151 (154)
Q Consensus 151 ~ 151 (154)
.
T Consensus 175 s 175 (255)
T 4a17_F 175 G 175 (255)
T ss_dssp C
T ss_pred C
Confidence 4
No 215
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=47.28 E-value=67 Score=22.14 Aligned_cols=78 Identities=13% Similarity=0.080 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 73 ALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+..........--+=..-..|...++.||++..
T Consensus 59 r~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 137 (300)
T 3eb2_A 59 REAVVRATIEAAQR-RVPVVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYT 137 (300)
T ss_dssp HHHHHHHHHHHHTT-SSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 34445555544432 45554444443454444 4578889999999887643333321122234678888899999985
Q ss_pred C
Q 031713 151 K 151 (154)
Q Consensus 151 ~ 151 (154)
-
T Consensus 138 ~ 138 (300)
T 3eb2_A 138 N 138 (300)
T ss_dssp C
T ss_pred C
Confidence 3
No 216
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=47.21 E-value=53 Score=21.92 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHh--cCCCEEEEecC
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEK--HKIQLLIVGSH 121 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~--~~~dlivlg~~ 121 (154)
+.++++++...+.+..+...+.-|--.+. +..+.+ .++|.+|+|+.
T Consensus 172 ~ki~~lr~~~~~~~~~~~I~vdGGI~~~~-~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 172 DRVIQVEKRLGNRRVEKLINIDGSMTLEL-AKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHHHGGGGGGCEEEEESSCCHHH-HHHHHHSSSCCCCEEECGG
T ss_pred HHHHHHHHHHHhcCCCceEEEECCcCHHH-HHHHHHhCCCCcEEEEeeH
Confidence 33455566665556566655544533344 444555 79999999975
No 217
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=47.02 E-value=64 Score=22.15 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=32.4
Q ss_pred ChhhHH--HHHHHhcCCCEEEEecCCCCC-cccccccchhHHHhhcCCCcEEEEc
Q 031713 99 DPKNVI--CEAAEKHKIQLLIVGSHSRGP-IQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 99 ~~~~~i--~~~a~~~~~dlivlg~~~~~~-~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+..++| .+.+++.++|-+.+....... ...--+=..-..|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (293)
T 1w3i_A 76 NLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp CHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 344444 456788999999888764433 2221111233567788899999874
No 218
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=46.96 E-value=75 Score=22.63 Aligned_cols=74 Identities=7% Similarity=-0.042 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh--c-CCCcEEEE
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH--N-AKCPVLVV 149 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~--~-~~~pvliv 149 (154)
++..+.+.+.+.+.|++++..-........+..... ++|.||+|+......-...+....+.+.. . ...|+.++
T Consensus 271 ~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~ 347 (414)
T 2q9u_A 271 HRMALALLDGARSTGCETVLLEMTSSDITKVALHTY--DSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAF 347 (414)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH--hCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEE
Confidence 344555555566567776655444333344555555 89999999865332222122333344332 1 34666654
No 219
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=46.76 E-value=24 Score=24.46 Aligned_cols=63 Identities=14% Similarity=0.099 Sum_probs=40.8
Q ss_pred cCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCc-cc-ccccchhHHHhh--cCCCcEEEE
Q 031713 87 HGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPI-QR-AFLGSVSNYCVH--NAKCPVLVV 149 (154)
Q Consensus 87 ~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~-~~-~~~gs~~~~l~~--~~~~pvliv 149 (154)
.+.-+----..+ ...+++++.|++.+..+|+-.+.+.... .+ ..+......+.+ +.++||.+-
T Consensus 19 ~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValH 86 (288)
T 3q94_A 19 GKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 86 (288)
T ss_dssp HTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred CCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 343333333344 7899999999999999998776542222 11 134455666777 888998763
No 220
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=46.53 E-value=35 Score=21.23 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHh---cCCCEEEEec
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEK---HKIQLLIVGS 120 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~---~~~dlivlg~ 120 (154)
.+...+++.|.++.......|- +.|.+..++ .++|+||..-
T Consensus 31 ~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 31 IITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp HHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred HHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECC
Confidence 3455566678876554444544 666655433 4799998753
No 221
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=46.39 E-value=41 Score=19.46 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~ 123 (154)
++..+.+.+.+.+.|++++..-...... ... .++|.||+|+...
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~~----~~l--~~~d~vi~g~p~y 57 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTNV----DDV--ASKDVILLGCPAM 57 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCCH----HHH--HTCSEEEEECCCB
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCCH----HHH--hcCCEEEEEcccc
Confidence 4455555666666677766543333111 122 3799999998653
No 222
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=46.30 E-value=72 Score=22.20 Aligned_cols=78 Identities=8% Similarity=0.032 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+..........--+=..-..|...++.||++.
T Consensus 77 Er~~v~~~~v~~~~g-rvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilY 155 (314)
T 3qze_A 77 EHIQVIRRVVDQVKG-RIPVIAGTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILY 155 (314)
T ss_dssp HHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334455555554432 34443333222444444 456888999999998754333322111223366788889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 156 n 156 (314)
T 3qze_A 156 N 156 (314)
T ss_dssp E
T ss_pred e
Confidence 4
No 223
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=46.24 E-value=76 Score=22.47 Aligned_cols=30 Identities=13% Similarity=-0.043 Sum_probs=22.5
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEecc
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARP 43 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~ 43 (154)
...++..+++|+++|+..+ ..+|+++|=..
T Consensus 143 ~~~~eRiar~AF~~A~~r~-rkkvt~v~KaN 172 (333)
T 1x0l_A 143 KKASERIGRAALRIAEGRP-RKTLHIAHKAN 172 (333)
T ss_dssp HHHHHHHHHHHHHHHHTST-TCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHhcC-CCeEEEEecCc
Confidence 3568889999999999873 15788887533
No 224
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=45.97 E-value=62 Score=22.15 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=32.7
Q ss_pred ChhhHH--HHHHHhcCCCEEEEecCCCCC-cccccccchhHHHhhcCCCcEEEEc
Q 031713 99 DPKNVI--CEAAEKHKIQLLIVGSHSRGP-IQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 99 ~~~~~i--~~~a~~~~~dlivlg~~~~~~-~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+..+.| .+.+++.++|-+.+-...... ...--+=..-..|...++.||++..
T Consensus 76 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (288)
T 2nuw_A 76 NLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYN 130 (288)
T ss_dssp CHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 444444 566888999999887764433 2221111233567888899999874
No 225
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=45.95 E-value=41 Score=20.93 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=19.8
Q ss_pred HHhcCCeEEEEEecCChhhHHHHHHHh---cCCCEEEEe
Q 031713 84 CAKHGVVAETMTEMGDPKNVICEAAEK---HKIQLLIVG 119 (154)
Q Consensus 84 ~~~~~~~~~~~v~~g~~~~~i~~~a~~---~~~dlivlg 119 (154)
+++.|.++......+|-.+.|.+..++ .++|+||..
T Consensus 38 l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 38 LQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp ---CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 566787766555556555555544332 259998875
No 226
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=45.93 E-value=54 Score=20.69 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=26.1
Q ss_pred HHHHHHHHHH-HHhcCCeEEEEEecCC-------------hhhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEI-CAKHGVVAETMTEMGD-------------PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~-~~~~~~~~~~~v~~g~-------------~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
++..+.+.+. +.+.|.+++..-...- ....+.+... .+|.||+|+.-
T Consensus 19 ~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~--~aD~ii~~sP~ 79 (197)
T 2vzf_A 19 AKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATC--NADGLIVATPI 79 (197)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHH--HCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHH--HCCEEEEEeCc
Confidence 3444455555 5555766655443321 1233344444 79999999864
No 227
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=45.65 E-value=71 Score=21.92 Aligned_cols=78 Identities=14% Similarity=0.064 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+..........--+=..-..|...++.||++.
T Consensus 56 Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilY 134 (292)
T 3daq_A 56 EKELILKTVIDLVDK-RVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLY 134 (292)
T ss_dssp HHHHHHHHHHHHHTT-SSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 334445555554432 34443333223454444 456888999999888754333322111123356777779999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 135 n 135 (292)
T 3daq_A 135 N 135 (292)
T ss_dssp E
T ss_pred e
Confidence 4
No 228
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=45.15 E-value=83 Score=22.58 Aligned_cols=26 Identities=8% Similarity=-0.050 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
..++..+++|+++|+... .+|+++|=
T Consensus 167 ~~~eRIar~AFe~A~~rr--kkVT~v~K 192 (361)
T 3udu_A 167 KEIERIARIAFESARIRK--KKVHLIDK 192 (361)
T ss_dssp HHHHHHHHHHHHHHHHTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEEC
Confidence 457889999999998865 78888874
No 229
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=45.06 E-value=68 Score=21.57 Aligned_cols=71 Identities=10% Similarity=0.022 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhh--HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKN--VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~--~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
..++.+.+.+++.|..+......++..+ ..++.....++|-||+.......... . -..+...++||+++-.
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~-~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN-----V-VKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH-----H-HHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH-----H-HHHHHHCCCeEEEECC
Confidence 4555666667777887766554455543 45566667799999987654332211 1 2345667899988743
No 230
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=44.73 E-value=72 Score=21.77 Aligned_cols=73 Identities=11% Similarity=0.123 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCC-cccccccchhHHHhhcCCCcE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGP-IQRAFLGSVSNYCVHNAKCPV 146 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~-~~~~~~gs~~~~l~~~~~~pv 146 (154)
+..+.++.+.+... | ..+-.| +..+.| .+.+++.++|-+.+-...... ...--+=..-..|...++.||
T Consensus 52 Er~~v~~~~~~~~~--g----vi~Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPi 125 (286)
T 2r91_A 52 EKMELTDAATSAAR--R----VIVQVASLNADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPV 125 (286)
T ss_dssp HHHHHHHHHHHHCS--S----EEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHhC--C----EEEeeCCCCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 33444555554332 3 333344 344444 456888999999888765433 222111123356778889999
Q ss_pred EEEc
Q 031713 147 LVVR 150 (154)
Q Consensus 147 liv~ 150 (154)
++..
T Consensus 126 ilYn 129 (286)
T 2r91_A 126 FLYN 129 (286)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9874
No 231
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=44.68 E-value=64 Score=21.18 Aligned_cols=80 Identities=8% Similarity=-0.045 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
+...++.++++|+..| ++...+|.-...... .. .+...+...+.++++...+++.|+.+-.+.
T Consensus 81 ~~~~~~~~i~~a~~lG--~~~v~~~~g~~~~~~--------~~-------~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 143 (275)
T 3qc0_A 81 AIDDNRRAVDEAAELG--ADCLVLVAGGLPGGS--------KN-------IDAARRMVVEGIAAVLPHARAAGVPLAIEP 143 (275)
T ss_dssp HHHHHHHHHHHHHHTT--CSCEEEECBCCCTTC--------CC-------HHHHHHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEeeCCCCCCC--------cC-------HHHHHHHHHHHHHHHHHHHHHcCCEEEEeE
Confidence 3467788899999988 787777752111000 00 123345566777888888888898865553
Q ss_pred ec---------CChhhHHHHHHHhcC
Q 031713 96 EM---------GDPKNVICEAAEKHK 112 (154)
Q Consensus 96 ~~---------g~~~~~i~~~a~~~~ 112 (154)
.. ....+.+.+++++.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 169 (275)
T 3qc0_A 144 LHPMYAADRACVNTLGQALDICETLG 169 (275)
T ss_dssp CCGGGTTTTBSCCCHHHHHHHHHHHC
T ss_pred CCCcccCCccccCCHHHHHHHHHHhC
Confidence 21 123455566666544
No 232
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=44.63 E-value=71 Score=21.67 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=32.7
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+.|.+.+++.++|+|+....+.+-......+..+....+..+.|++..
T Consensus 138 ~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 138 DDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 456677889999999997544444455566666666677777776654
No 233
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=44.59 E-value=68 Score=21.41 Aligned_cols=76 Identities=11% Similarity=-0.045 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
+...++.++++|+..| ++...+|.-..+. . .+...+...+.++++.+.++++|+.+-.+.
T Consensus 100 ~~~~~~~~i~~a~~lG--~~~v~~~~G~~~~-----------~-------~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 159 (290)
T 3tva_A 100 RVAEMKEISDFASWVG--CPAIGLHIGFVPE-----------S-------SSPDYSELVRVTQDLLTHAANHGQAVHLET 159 (290)
T ss_dssp HHHHHHHHHHHHHHHT--CSEEEECCCCCCC-----------T-------TSHHHHHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEcCCCCcc-----------c-------chHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 4567888899999988 7887776421100 0 113345556777888888888898865554
Q ss_pred ecCChhhHHHHHHHhcC
Q 031713 96 EMGDPKNVICEAAEKHK 112 (154)
Q Consensus 96 ~~g~~~~~i~~~a~~~~ 112 (154)
.. +....+.++.++.+
T Consensus 160 ~~-~~~~~~~~l~~~~~ 175 (290)
T 3tva_A 160 GQ-ESADHLLEFIEDVN 175 (290)
T ss_dssp CS-SCHHHHHHHHHHHC
T ss_pred CC-CCHHHHHHHHHhcC
Confidence 43 33455666666544
No 234
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=44.40 E-value=87 Score=22.61 Aligned_cols=26 Identities=8% Similarity=-0.051 Sum_probs=21.4
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
..++..+++|+++|+... .+|+++|=
T Consensus 179 ~~~eRIar~AFe~A~~rr--kkVT~v~K 204 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRR--KKVTSVDK 204 (375)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CcEEEEEC
Confidence 467889999999998865 78888874
No 235
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=44.39 E-value=23 Score=22.33 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=13.2
Q ss_pred hHHHHHHHhcCCCEEEEecCC
Q 031713 102 NVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~ 122 (154)
+.+.+... .+|.||+|+.-
T Consensus 64 ~~~~~~l~--~aD~ii~~sP~ 82 (193)
T 1rtt_A 64 ERFREQIR--AADALLFATPE 82 (193)
T ss_dssp HHHHHHHH--HCSEEEEECCE
T ss_pred HHHHHHHH--hCCEEEEEccc
Confidence 34445555 89999999864
No 236
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=44.38 E-value=67 Score=21.45 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
..++.+.+.+++.|..+......++. ...+++.....++|-||+....... .-..+...++|++++
T Consensus 31 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---------~~~~~~~~~iPvV~~ 98 (301)
T 3miz_A 31 DIVRGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---------VDPESGDVSIPTVMI 98 (301)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---------CCCCCTTCCCCEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---------HHHHHHhCCCCEEEE
Confidence 45566677777788877665544444 3456666777899998886532111 112345567888776
No 237
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=44.27 E-value=60 Score=21.40 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccch
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSV 134 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~ 134 (154)
.+..+.+++.|.++-..+..+.+.+.+..+.. ..|+|.+.+...+.....|....
T Consensus 102 ~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~--~~D~Vl~msv~pGf~Gq~f~~~~ 156 (228)
T 3ovp_A 102 GALIKDIRENGMKVGLAIKPGTSVEYLAPWAN--QIDMALVMTVEPGFGGQKFMEDM 156 (228)
T ss_dssp HHHHHHHHHTTCEEEEEECTTSCGGGTGGGGG--GCSEEEEESSCTTTCSCCCCGGG
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhc--cCCeEEEeeecCCCCCcccCHHH
Confidence 34555556678877666655667777766666 57888776654443333344444
No 238
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=44.02 E-value=30 Score=20.20 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCeEEEEEecCC-hhhHHH-HHHHhcCCCEEEEecCC
Q 031713 78 GRAKEICAKHGVVAETMTEMGD-PKNVIC-EAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~-~~~~i~-~~a~~~~~dlivlg~~~ 122 (154)
+.+.+.+++.|+++++...... +...|- +.+. .+|++|+....
T Consensus 26 eaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 70 (111)
T 2kyr_A 26 QALEEAAVEAGYEVKIETQGADGIQNRLTAQDIA--EATIIIHSVAV 70 (111)
T ss_dssp HHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHH--HCSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHH--hCCEEEEEeCC
Confidence 3445555667888777665532 222222 2345 79999988754
No 239
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.01 E-value=69 Score=21.35 Aligned_cols=70 Identities=13% Similarity=0.188 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+.+.|..+......+ .....+.+.....++|-||+....... ..-..+...++|++++-.
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 26 LEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECC
Confidence 4556667777777888766554433 345667788888899999987543221 123356677899988743
No 240
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=44.00 E-value=49 Score=19.65 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=34.0
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~ 151 (154)
+...++..|....... .+..+ -++..++..+|+|++... -....++ .++.++-. ...+||+++-.
T Consensus 28 l~~~L~~~G~~~v~~a--~~g~~-al~~~~~~~~DlillD~~-MP~mdG~---el~~~ir~~~~~~~ipvI~lTa 95 (134)
T 3to5_A 28 VKNLLRDLGFNNTQEA--DDGLT-ALPMLKKGDFDFVVTDWN-MPGMQGI---DLLKNIRADEELKHLPVLMITA 95 (134)
T ss_dssp HHHHHHHTTCCCEEEE--SSHHH-HHHHHHHHCCSEEEEESC-CSSSCHH---HHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHcCCcEEEEE--CCHHH-HHHHHHhCCCCEEEEcCC-CCCCCHH---HHHHHHHhCCCCCCCeEEEEEC
Confidence 3444455675422222 23333 345566779999999975 2223321 13333322 23489988854
No 241
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=44.00 E-value=76 Score=21.82 Aligned_cols=78 Identities=14% Similarity=0.051 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+..........--+=..-..|...++.||++.
T Consensus 61 Er~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilY 139 (297)
T 3flu_A 61 EHTAVIEAVVKHVAK-RVPVIAGTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIY 139 (297)
T ss_dssp HHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEeCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 344455555554432 34443333222444444 457888999999888754333322111123366888889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 140 n 140 (297)
T 3flu_A 140 N 140 (297)
T ss_dssp E
T ss_pred E
Confidence 4
No 242
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=43.95 E-value=67 Score=21.20 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+++.|..+......++.. ...++.....++|-||+......... .. -..+...++||+++-.
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 21 LKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN-----PW-LQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHH-----HH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HH-HHHHHHCCCcEEEecC
Confidence 3455666677777888776654445543 34555666679999998754211111 11 2345566899888743
No 243
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=43.63 E-value=80 Score=21.98 Aligned_cols=78 Identities=13% Similarity=0.069 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..+.| .+.+++.++|-+.+..........--+=..-..|...++.||++.
T Consensus 76 Er~~v~~~~v~~~~g-rvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilY 154 (315)
T 3si9_A 76 EHKRIIELCVEQVAK-RVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIY 154 (315)
T ss_dssp HHHHHHHHHHHHHTT-SSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEE
Confidence 334455555554432 34443333222444444 457889999999988754333322111123356788889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 155 n 155 (315)
T 3si9_A 155 N 155 (315)
T ss_dssp E
T ss_pred e
Confidence 4
No 244
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=43.58 E-value=46 Score=19.23 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=27.7
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcCC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRKP 152 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~~ 152 (154)
....++..++..+|+||+...-.. ... -.....+-. ...+||+++-..
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPK-ISG---MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSS-SCH---HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCcccCCCCEEEEeCC
Confidence 344445556678999999975322 221 123444544 245899888543
No 245
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=43.32 E-value=36 Score=23.59 Aligned_cols=46 Identities=7% Similarity=0.098 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEE-Ec
Q 031713 104 ICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLV-VR 150 (154)
Q Consensus 104 i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvli-v~ 150 (154)
+++.+.+.+.|.|++|+.+-+.+.. -...+...+-+..+.||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~-~~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFES-HMEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHH-HHHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchH-HHHHHHHHHHHhCCCCEEEECC
Confidence 5666778899999999332222222 1334555555558899999 87
No 246
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=43.21 E-value=37 Score=22.18 Aligned_cols=72 Identities=14% Similarity=0.080 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhcCCe-EEEEEecCChhhHHHHHHHhcCCCEEEEecCC-CCCcccccccchhHHHhhcCCCcEEE
Q 031713 74 LALLGRAKEICAKHGVV-AETMTEMGDPKNVICEAAEKHKIQLLIVGSHS-RGPIQRAFLGSVSNYCVHNAKCPVLV 148 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~-~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~-~~~~~~~~~gs~~~~l~~~~~~pvli 148 (154)
++.++.+.+.+++.+++ +-.-...|..+....+..+ + ++|++..+. ......+-+..-..+-++....+|+.
T Consensus 37 ~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~--~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 110 (206)
T 1t57_A 37 ERVLELVGERADQLGIRNFVVASVSGETALRLSEMVE--G-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 110 (206)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCC--S-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHcc--C-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 45566666777777766 2222333666666665442 4 788887652 22222334555556666666666653
No 247
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=42.99 E-value=96 Score=22.71 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHhcCCCEEEEecCCCCCc
Q 031713 104 ICEAAEKHKIQLLIVGSHSRGPI 126 (154)
Q Consensus 104 i~~~a~~~~~dlivlg~~~~~~~ 126 (154)
.++.++..++|++|+.+.++...
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~l~~ 194 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGRLQI 194 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCCSSC
T ss_pred HHHHHHHCCCCEEEEcCCCcccc
Confidence 34445456899999998775543
No 248
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=42.96 E-value=18 Score=21.01 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCeEEEEEecCC-hhhHH-HHHHHhcCCCEEEEecCCC
Q 031713 79 RAKEICAKHGVVAETMTEMGD-PKNVI-CEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~-~~~~i-~~~a~~~~~dlivlg~~~~ 123 (154)
.+.+.+++.|+++++...... +...| .+.+. .+|++|+.....
T Consensus 24 aLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d~~ 68 (106)
T 2m1z_A 24 ALKKGAKKMGNLIKVETQGATGIENELTEKDVN--IGEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHHTCEEEEEEEETTEESSCCCHHHHH--HCSEEEEEESSC
T ss_pred HHHHHHHHCCCEEEEEEecCccccCCCCHHHHh--hCCEEEEecccc
Confidence 344455566888776665532 33333 23445 899999998643
No 249
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=42.74 E-value=1.1e+02 Score=23.09 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=29.7
Q ss_pred hhHHHHHH-HhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 101 KNVICEAA-EKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 101 ~~~i~~~a-~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...+.+.+ +..++|.||+-.+..+.- ...-.+++..++||++..
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~TFs~a------~~~i~~l~~l~~PvL~~~ 104 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHTFSPA------KMWINGLTMLNKPLLQFH 104 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCSCCCT------HHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHhccccCCcEEEEeCCcCccH------HHHHHHHHhcCCCEEEEe
Confidence 34444555 456899999987654422 244567788999999974
No 250
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=42.59 E-value=65 Score=20.76 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=14.4
Q ss_pred CCCcEEEEEecCCchHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWAL 24 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~ 24 (154)
|+..+++++.|+.+..+ +++.+-
T Consensus 1 ~~~~~~ilalD~~~~~~-~~~~~~ 23 (216)
T 1q6o_A 1 MSLPMLQVALDNQTMDS-AYETTR 23 (216)
T ss_dssp --CCEEEEEECCSSHHH-HHHHHH
T ss_pred CCcCCeEEEECCCCHHH-HHHHHH
Confidence 66678999999976543 444443
No 251
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=42.22 E-value=93 Score=22.33 Aligned_cols=30 Identities=7% Similarity=-0.110 Sum_probs=23.2
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
...++..+++|+++|+..+ .+|+++|=..-
T Consensus 169 ~~~~eRiar~AFe~A~~rr--kkVt~v~KaNv 198 (363)
T 1cnz_A 169 RFEIERIARIAFESARKRR--RKVTSIDKANV 198 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhcC--CeEEEEECCcc
Confidence 3567889999999999865 68888875443
No 252
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=42.13 E-value=89 Score=22.09 Aligned_cols=46 Identities=4% Similarity=0.018 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCeEEEEEec--C-ChhhHHHHHHHhcCCCEEEEec
Q 031713 75 ALLGRAKEICAKHGVVAETMTEM--G-DPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~--g-~~~~~i~~~a~~~~~dlivlg~ 120 (154)
...+.+.+.+++.|+++...... + .-...++..++..++|.|++..
T Consensus 179 ~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~ 227 (419)
T 3h5l_A 179 NIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLRADPPAVIVVTH 227 (419)
T ss_dssp HHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHHHSCCSEEEECC
T ss_pred HHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcc
Confidence 34455566666667775443332 2 2344555556666788777763
No 253
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=42.10 E-value=81 Score=21.59 Aligned_cols=78 Identities=9% Similarity=0.043 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
+..+.++.+.+.... .+++-.-+...+..+.| .+.+++.++|-+.+..........--+=..-..|...++.||++.
T Consensus 55 Er~~v~~~~~~~~~g-r~pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilY 133 (291)
T 3tak_A 55 EHTQVIKEIIRVANK-RIPIIAGTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVELPLILY 133 (291)
T ss_dssp HHHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 334555555554432 34443333222454444 456888999999988754333322111123366888889999987
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
.
T Consensus 134 n 134 (291)
T 3tak_A 134 N 134 (291)
T ss_dssp E
T ss_pred e
Confidence 4
No 254
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=42.00 E-value=94 Score=22.29 Aligned_cols=29 Identities=7% Similarity=-0.047 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
..++..+++|+++|+... .+|+++|=..-
T Consensus 163 ~~~eRIar~AFe~A~~rr--kkVt~v~KaNv 191 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRR--KHVVSVDKANV 191 (359)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEECCcc
Confidence 457889999999999865 68888875433
No 255
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=41.90 E-value=75 Score=21.12 Aligned_cols=69 Identities=13% Similarity=0.125 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh-hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP-KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~-~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+++.|..+......++. ....++.....++|-||+....... ..... +.. .+|++++-.
T Consensus 27 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~-~~~-~iPvV~i~~ 96 (289)
T 3k9c_A 27 GDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-------DELGA-LAD-RVPALVVAR 96 (289)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-------HHHHH-HHT-TSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-------HHHHH-HHc-CCCEEEEcC
Confidence 455666777777778776655544432 4455555666789988887543221 12233 344 889888743
No 256
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=41.86 E-value=52 Score=19.30 Aligned_cols=64 Identities=8% Similarity=0.107 Sum_probs=34.5
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~ 151 (154)
+...+...|..+. ...+. ....+..+...+|++++...-.+ .... .....+-... .+|++++-.
T Consensus 19 l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dliild~~l~~-~~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 19 MQQTLELAGFTVS---SFASA-TEALAGLSADFAGIVISDIRMPG-MDGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp HHHHHHHTTCEEE---EESCH-HHHHHTCCTTCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHHHHcCcEEE---EECCH-HHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEEC
Confidence 3344444565432 22333 44455566678999999975322 2211 2334444443 489888743
No 257
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=41.76 E-value=53 Score=19.41 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhc--CCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKH--KIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~--~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+...+.+.|..+.. ...+..+. ++..++. .+|+|++...-.. ...+ .....+-...+ +||+++-..
T Consensus 51 ~l~~~L~~~g~~v~~--~~~~~~~a-l~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 51 QLTQIFTSEGFNIID--TAADGEEA-VIKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp HHHHHHHHTTCEEEE--EESSHHHH-HHHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHHHhCCCeEEE--EECCHHHH-HHHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEecc
Confidence 334444455654421 23344444 4444555 7999999876322 2211 23444544444 888887543
No 258
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=41.75 E-value=73 Score=20.99 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCe-EEEEEecCChh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVV-AETMTEMGDPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~-~~~~v~~g~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+.+.|.. +......++.. ..+++.....++|-||+.. ..+ . -+...++|++++-
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~---~~~---------~-~~~~~~iPvV~~~ 92 (277)
T 3hs3_A 26 AQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA---FTI---------P-PNFHLNTPLVMYD 92 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---CCC---------C-TTCCCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---hHH---------H-HHHhCCCCEEEEc
Confidence 45566677777788877 55443334443 3456667778999999876 111 1 2455678888774
Q ss_pred C
Q 031713 151 K 151 (154)
Q Consensus 151 ~ 151 (154)
.
T Consensus 93 ~ 93 (277)
T 3hs3_A 93 S 93 (277)
T ss_dssp C
T ss_pred c
Confidence 3
No 259
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=41.71 E-value=74 Score=21.02 Aligned_cols=71 Identities=14% Similarity=0.027 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhh--HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKN--VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~--~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+.+.|..+......++... ..++.....++|-||+......... .. -..+...++||+++-
T Consensus 24 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~-~~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 24 QRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG-----SA-IEEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH-----HH-HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HH-HHHHHHcCCCEEEec
Confidence 45566677777778888766554455443 4555666789999998754322211 11 234556689998884
No 260
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=41.66 E-value=61 Score=20.06 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=19.5
Q ss_pred CCeEEEEEecCChhhHHHHHHHh----cCCCEEEEe
Q 031713 88 GVVAETMTEMGDPKNVICEAAEK----HKIQLLIVG 119 (154)
Q Consensus 88 ~~~~~~~v~~g~~~~~i~~~a~~----~~~dlivlg 119 (154)
|.++......+|-.+.|.+..++ .++|+||..
T Consensus 43 G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 43 GAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp SEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 77766555555555555544333 479998875
No 261
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=41.65 E-value=75 Score=21.07 Aligned_cols=70 Identities=7% Similarity=-0.010 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCC--hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGD--PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~--~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+++.|..+......++ ....+.+.....++|-||+...... . .. -..+...++|++++-.
T Consensus 26 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~-~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 26 SQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN--D-----PR-VRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT--C-----HH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC--c-----HH-HHHHhhCCCCEEEECC
Confidence 45666777777778877655433332 3456667777789999988643211 1 12 2345667899988743
No 262
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=41.60 E-value=32 Score=22.38 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=27.6
Q ss_pred CCcEEEEEecCCchHH-HHHHHHHHHcccCCCCCeEEEEEe
Q 031713 2 DKKKVMVAIDESECRH-YALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~-~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
.-++|++++.++..+- ++++..-.+.+. | .+++++--
T Consensus 6 ~~k~I~lgiTGs~aa~~k~~~ll~~L~~~-g--~eV~vv~T 43 (201)
T 3lqk_A 6 AGKHVGFGLTGSHCTYHEVLPQMERLVEL-G--AKVTPFVT 43 (201)
T ss_dssp TTCEEEEECCSCGGGGGGTHHHHHHHHHT-T--CEEEEECS
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHhhC-C--CEEEEEEC
Confidence 3579999999998877 788777666553 5 68777643
No 263
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=41.48 E-value=67 Score=20.49 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=23.2
Q ss_pred HHHHHHh---cCCeEEEEEecCChhhHHHHHHH----hcCCCEEEEe
Q 031713 80 AKEICAK---HGVVAETMTEMGDPKNVICEAAE----KHKIQLLIVG 119 (154)
Q Consensus 80 ~~~~~~~---~~~~~~~~v~~g~~~~~i~~~a~----~~~~dlivlg 119 (154)
+...+++ .|..+......+|-.+.|.+..+ +.++|+||..
T Consensus 39 L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 39 LKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp HHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 3444444 68776665555654444444333 2379999875
No 264
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=41.29 E-value=70 Score=20.91 Aligned_cols=32 Identities=22% Similarity=0.191 Sum_probs=19.5
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
..++.|+.|+.+. ..+++.+-++. ..+..++|
T Consensus 5 ~~~livAlD~~~~-~~a~~~~~~~~------~~~~~ikv 36 (221)
T 3exr_A 5 LPNLQVALDHSNL-KGAITAAVSVG------NEVDVIEA 36 (221)
T ss_dssp CCEEEEEECCSSH-HHHHHHHHHHG------GGCSEEEE
T ss_pred CCCEEEEeCCCCH-HHHHHHHHhhC------CCceEEEE
Confidence 4579999999765 33555554432 24445566
No 265
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=41.19 E-value=28 Score=20.12 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHhcCCeEEEEEecCC-hhhHHHH-HHHhcCCCEEEEecCC
Q 031713 81 KEICAKHGVVAETMTEMGD-PKNVICE-AAEKHKIQLLIVGSHS 122 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~-~~~~i~~-~a~~~~~dlivlg~~~ 122 (154)
.+..++.|+++++...... +...|.. .+. .+|++|+....
T Consensus 26 ~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 67 (106)
T 2r48_A 26 QKAADRLGVSIKVETQGGIGVENKLTEEEIR--EADAIIIAADR 67 (106)
T ss_dssp HHHHHHHTCEEEEEEEETTEEESCCCHHHHH--HCSEEEEEESS
T ss_pred HHHHHHCCCeEEEEecCCCCccCCCCHHHHH--hCCEEEEEeCC
Confidence 3334445777766665532 3333333 455 89999998764
No 266
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=41.08 E-value=1e+02 Score=22.59 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=25.0
Q ss_pred HHHHHHhcCCeEEEEEecCChhhH---HHHHHHhcCCCEEEEecCCCCC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNV---ICEAAEKHKIQLLIVGSHSRGP 125 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~---i~~~a~~~~~dlivlg~~~~~~ 125 (154)
+.......|+++.......++... .+..+...++|++++.+.++..
T Consensus 144 L~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 144 LLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCcc
Confidence 333444456654332111244332 2334445689999999988765
No 267
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=41.05 E-value=76 Score=20.96 Aligned_cols=69 Identities=10% Similarity=0.090 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+++.|..+......++. ...+++.....++|-||+...... ...-..+...++||+++-
T Consensus 29 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~ 99 (292)
T 3k4h_A 29 PEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIG 99 (292)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEEC
Confidence 345566666677778665443222222 244566677788999888543211 112345566788988874
No 268
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=40.76 E-value=51 Score=18.90 Aligned_cols=66 Identities=14% Similarity=0.003 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcCC
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRKP 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~~ 152 (154)
+.+...+...|..+. ...+. ....+..++..+|+|++.. - ..... -.....+-... .+|++++-..
T Consensus 18 ~~l~~~L~~~g~~v~---~~~~~-~~a~~~l~~~~~dlvi~d~-~-~~~~g---~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 18 LAVKNALEKDGFNVI---WAKNE-QEAFTFLRREKIDLVFVDV-F-EGEES---LNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp HHHHHHHGGGTCEEE---EESSH-HHHHHHHTTSCCSEEEEEC-T-TTHHH---HHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHHHhCCCEEE---EECCH-HHHHHHHhccCCCEEEEeC-C-CCCcH---HHHHHHHHHHCCCCCEEEEECC
Confidence 344444555565443 22333 4455666777999999997 3 22221 12334444444 4898887543
No 269
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=40.69 E-value=80 Score=21.14 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
..+++.+.+.+++.|..+......++. ...+++.....++|-||+...... ...-..+...++|++++-.
T Consensus 43 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~i~~ 114 (305)
T 3huu_A 43 SDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD--------DPIEHLLNEFKVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC--------cHHHHHHHHcCCCEEEECC
Confidence 445566666667778665443322322 345667777788998888643221 1122345667889888743
No 270
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=40.55 E-value=34 Score=23.97 Aligned_cols=48 Identities=17% Similarity=0.132 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC--CCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS--RGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~--~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+..+.++..+ ++|+||+|-.. .+-...+....+.+.| +++ |++.|.+
T Consensus 172 ~a~p~vl~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~Al-~~s--~kV~v~n 221 (311)
T 3c3d_A 172 SISPKVLEAFE--KEENILIGPSNPITSIGPIISLPGMRELL-KKK--KVVAVSP 221 (311)
T ss_dssp CCCHHHHHHHH--HCCEEEECSSCTTTTSHHHHHSTTHHHHH-HTS--EEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHHhhhcCchhHHHHH-HcC--CEEEEcc
Confidence 35667888888 89999999653 2333345666676764 444 7776654
No 271
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=40.54 E-value=1e+02 Score=22.34 Aligned_cols=71 Identities=4% Similarity=-0.101 Sum_probs=37.7
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
|+|+++-+.|-.+.....-...-++.|...|...-.+-||..+.. .+...+.++++
T Consensus 24 ~~M~~LGiSvYp~~~~~~~~~~Yi~~a~~~Gf~~IFTSL~~~e~~------------------------~~~~~~~~~~l 79 (385)
T 1x7f_A 24 AMERKLGISLYPEHSTKEKDMAYISAAARHGFSRIFTCLLSVNRP------------------------KEEIVAEFKEI 79 (385)
T ss_dssp -CCCEEEEEECGGGSCHHHHHHHHHHHHTTTEEEEEEEECCC--------------------------------HHHHHH
T ss_pred HHHHheEEEEcCCCCCHHHHHHHHHHHHHCCCCEEEccCCccCCC------------------------hHHHHHHHHHH
Confidence 456677888877654444443455677777732334444443322 22234566777
Q ss_pred HHHHHhcCCeEEEEE
Q 031713 81 KEICAKHGVVAETMT 95 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v 95 (154)
.+.+++.|.++-.-|
T Consensus 80 ~~~a~~~g~~vi~DV 94 (385)
T 1x7f_A 80 INHAKDNNMEVILDV 94 (385)
T ss_dssp HHHHHHTTCEEEEEE
T ss_pred HHHHHHCCCEEEEEC
Confidence 788888777654443
No 272
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=40.30 E-value=65 Score=24.76 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=39.8
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc-CCCcEEEE
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN-AKCPVLVV 149 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~-~~~pvliv 149 (154)
+...++..|.++.. +-..-+.+.|++.+++.++|+|.+......... ....+.+.+-+. ..+||++-
T Consensus 118 va~~L~~~G~eVi~-LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~--~m~~~i~~Lr~~g~~i~ViVG 185 (579)
T 3bul_A 118 VGVVLQCNNYEIVD-LGVMVPAEKILRTAKEVNADLIGLSGLITPSLD--EMVNVAKEMERQGFTIPLLIG 185 (579)
T ss_dssp HHHHHHTTTCEEEE-CCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHH--HHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHCCCEEEE-CCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHH--HHHHHHHHHHHcCCCCeEEEE
Confidence 34455666755422 222358999999999999999999875322221 222333434332 24888764
No 273
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=40.19 E-value=78 Score=20.89 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=35.0
Q ss_pred HHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhH
Q 031713 83 ICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSN 136 (154)
Q Consensus 83 ~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~ 136 (154)
.+++.|.++-..+-.+.+.+.+..+.....+|+|.+.+-..++....|.....+
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ 162 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMG 162 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHHH
Confidence 666778887666644567777776665446899988776555555445544444
No 274
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=40.06 E-value=82 Score=21.08 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 031713 17 HYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMTE 96 (154)
Q Consensus 17 ~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~ 96 (154)
...++.++++|+..| ++..++|-..... .... +...+...+.++++.+.+++.|+.+-.+..
T Consensus 107 ~~~~~~~i~~A~~lG--~~~v~~~~~~~~~--------~~~~--------~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~ 168 (295)
T 3cqj_A 107 LEIMRKAIQFAQDVG--IRVIQLAGYDVYY--------QEAN--------NETRRRFRDGLKESVEMASRAQVTLAMEIM 168 (295)
T ss_dssp HHHHHHHHHHHHHHT--CCEEEECCCSCSS--------SCCC--------HHHHHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHHcC--CCEEEECCCCCCc--------CcCH--------HHHHHHHHHHHHHHHHHHHHhCCEEEEeeC
Confidence 456888999999988 7776665221100 0001 123345556677777788888988666554
Q ss_pred cC---ChhhHHHHHHHhcCC
Q 031713 97 MG---DPKNVICEAAEKHKI 113 (154)
Q Consensus 97 ~g---~~~~~i~~~a~~~~~ 113 (154)
.+ ...+.+.+++++.+.
T Consensus 169 ~~~~~~~~~~~~~l~~~v~~ 188 (295)
T 3cqj_A 169 DYPLMNSISKALGYAHYLNN 188 (295)
T ss_dssp SSGGGCSHHHHHHHHHHHCC
T ss_pred CCcccCCHHHHHHHHHhcCC
Confidence 43 234556666665543
No 275
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=40.04 E-value=50 Score=18.63 Aligned_cols=68 Identities=9% Similarity=0.118 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcCC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRKP 152 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~~ 152 (154)
.+...+...|... .....+..+++........+|++++...-. ...++ .+...+-.. ..+||+++-..
T Consensus 20 ~l~~~L~~~g~~~--v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p-~~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (129)
T 3h1g_A 20 IIKNTLSRLGYED--VLEAEHGVEAWEKLDANADTKVLITDWNMP-EMNGL---DLVKKVRSDSRFKEIPIIMITAE 90 (129)
T ss_dssp HHHHHHHHTTCCC--EEEESSHHHHHHHHHHCTTCCEEEECSCCS-SSCHH---HHHHHHHTSTTCTTCCEEEEESC
T ss_pred HHHHHHHHcCCcE--EEEeCCHHHHHHHHHhCCCCCEEEEeCCCC-CCCHH---HHHHHHHhcCCCCCCeEEEEeCC
Confidence 3344444556432 122345555555555545799999986522 12211 233444432 35899888543
No 276
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=39.85 E-value=35 Score=20.50 Aligned_cols=40 Identities=18% Similarity=0.015 Sum_probs=26.3
Q ss_pred CCcEEEEEecCCch----HHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 2 DKKKVMVAIDESEC----RHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 2 ~~~~iLv~vd~~~~----~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
.++++++.+..+++ +..++++|...+.. + .++.++-.-+.
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~--~~v~Vff~~DG 47 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-D--QDVCVLFLDDG 47 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-C--CEEEEEECGGG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-C--CCEEEEEEhHH
Confidence 45789999988776 45677777655554 4 47777766443
No 277
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=39.76 E-value=40 Score=20.45 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 103 VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
...+.-++.+.+.-++|+...+..-....-.+-+...+.++.||+++
T Consensus 74 ~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~ 120 (141)
T 4e0q_A 74 KKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQ 120 (141)
T ss_dssp HHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEE
Confidence 33344444555566666543222111011112234444555666555
No 278
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=39.66 E-value=89 Score=21.38 Aligned_cols=63 Identities=10% Similarity=0.010 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+.+.|..+......+ .....+++.....++|-||+... -..+...++|++++-
T Consensus 80 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~--------------~~~~~~~~iPvV~~~ 143 (333)
T 3jvd_A 80 SESLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV--------------VGSIAPEGIPMVQLT 143 (333)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC--------------TTCCC-CCSCEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch--------------HHHHhhCCCCEEEEC
Confidence 3455666666777787765544333 12234556666678999888653 112345567777763
No 279
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=39.60 E-value=1.1e+02 Score=22.43 Aligned_cols=29 Identities=7% Similarity=-0.120 Sum_probs=12.7
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAI 31 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~ 31 (154)
+++|-+..+.++.....++...+.++..|
T Consensus 185 w~~V~ii~~dd~~G~~~~~~~~~~~~~~G 213 (479)
T 3sm9_A 185 WTYVSTVASEGDYGETGIEAFEQEARLRN 213 (479)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHTTT
T ss_pred CeEEEEEEecchhhHHHHHHHHHHHHHCC
Confidence 34444444444444444444444444433
No 280
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=39.57 E-value=41 Score=21.24 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=31.4
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTE 45 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~ 45 (154)
-+.+++.+..|.++...++ +++.|+..| +++..+.-.+..
T Consensus 113 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g--~~vI~IT~~~~s 152 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQ-AIQAAHDRE--MLVVALTGRDGG 152 (199)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECTTCH
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEECCCCC
Confidence 4578999999999998886 667899887 788777665443
No 281
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=39.53 E-value=46 Score=18.02 Aligned_cols=65 Identities=6% Similarity=-0.025 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
.+...+...|..+.. ..+. +...+..+...+|++++...-.. ... -.....+-.. ..+|++++-.
T Consensus 16 ~l~~~l~~~g~~v~~---~~~~-~~~~~~l~~~~~dlii~d~~~~~-~~~---~~~~~~l~~~~~~~~~~ii~~~~ 83 (119)
T 2j48_A 16 VVCEMLTAAGFKVIW---LVDG-STALDQLDLLQPIVILMAWPPPD-QSC---LLLLQHLREHQADPHPPLVLFLG 83 (119)
T ss_dssp HHHHHHHHTTCEEEE---ESCH-HHHHHHHHHHCCSEEEEECSTTC-CTH---HHHHHHHHHTCCCSSCCCEEEES
T ss_pred HHHHHHHhCCcEEEE---ecCH-HHHHHHHHhcCCCEEEEecCCCC-CCH---HHHHHHHHhccccCCCCEEEEeC
Confidence 334444455654321 2333 44445556678999999875322 111 1234445444 3588888754
No 282
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=39.51 E-value=81 Score=20.83 Aligned_cols=80 Identities=10% Similarity=-0.091 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
....++.++++|+..| ++...+|.-.+... ..+...+...+.++++.+.+++.|+.+-.+.
T Consensus 91 ~~~~~~~~i~~A~~lG--a~~v~~~~g~~~~~-----------------~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 151 (269)
T 3ngf_A 91 FRDNVDIALHYALALD--CRTLHAMSGITEGL-----------------DRKACEETFIENFRYAADKLAPHGITVLVEP 151 (269)
T ss_dssp HHHHHHHHHHHHHHTT--CCEEECCBCBCTTS-----------------CHHHHHHHHHHHHHHHHHHHGGGTCEEEECC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEccCCCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 4466788999999988 77766553211000 0123445566777888888888898866653
Q ss_pred ec--------CChhhHHHHHHHhcCCC
Q 031713 96 EM--------GDPKNVICEAAEKHKIQ 114 (154)
Q Consensus 96 ~~--------g~~~~~i~~~a~~~~~d 114 (154)
.. ....+.+.+++++.+.+
T Consensus 152 ~n~~~~~~~~~~~~~~~~~l~~~v~~~ 178 (269)
T 3ngf_A 152 LNTRNMPGYFIVHQLEAVGLVKRVNRP 178 (269)
T ss_dssp CCTTTSTTBSCCCHHHHHHHHHHHCCT
T ss_pred CCcccCccchhcCHHHHHHHHHHhCCC
Confidence 11 13345566666665433
No 283
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=38.86 E-value=91 Score=21.26 Aligned_cols=70 Identities=9% Similarity=0.043 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhh--HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKN--VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~--~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+.+.|..+......++... ..++.....++|-||+...... ......++...++|++++-
T Consensus 79 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~~~~~~~~~~iPvV~~~ 150 (338)
T 3dbi_A 79 SELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-------VDEIDDIIDAHSQPIMVLN 150 (338)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-------HHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-------hHHHHHHHHcCCCCEEEEc
Confidence 34566667777778877655544444433 3556666779999988643211 1123456677788988874
No 284
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=38.63 E-value=57 Score=19.39 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=8.5
Q ss_pred HHHHHHhcCCCEEEEe
Q 031713 104 ICEAAEKHKIQLLIVG 119 (154)
Q Consensus 104 i~~~a~~~~~dlivlg 119 (154)
|..++++.++.++.++
T Consensus 59 i~~lc~~~~Ip~~~v~ 74 (126)
T 2xzm_U 59 VKALCAKNEIKYVSVP 74 (126)
T ss_dssp HHHHHHHTTCCEEEES
T ss_pred HHHHHHHhCCCEEEEC
Confidence 4445555555555554
No 285
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=38.51 E-value=18 Score=20.49 Aligned_cols=20 Identities=5% Similarity=0.336 Sum_probs=11.6
Q ss_pred hHHHHHHHhcCCCEEEEecC
Q 031713 102 NVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~ 121 (154)
+.+.+..+..++.++|+...
T Consensus 25 ~~v~kai~~gka~lViiA~D 44 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTED 44 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETT
T ss_pred hhhHHHHhcCceeEEEEecc
Confidence 44455556666666666654
No 286
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=38.26 E-value=34 Score=16.16 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=18.7
Q ss_pred EEEEEecC-ChhhHHHHHHHhcCCCE
Q 031713 91 AETMTEMG-DPKNVICEAAEKHKIQL 115 (154)
Q Consensus 91 ~~~~v~~g-~~~~~i~~~a~~~~~dl 115 (154)
+..++... +..++|+.|+.+.+.|-
T Consensus 12 vslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCCchhHHHHHHHHHccchh
Confidence 44555554 68899999999988874
No 287
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=38.25 E-value=44 Score=20.98 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=30.6
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
-+.+++.+..|.++...++ +++.|+..| +++..+.-.+.
T Consensus 109 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g--~~vI~IT~~~~ 147 (196)
T 2yva_A 109 AGDVLLAISTRGNSRDIVK-AVEAAVTRD--MTIVALTGYDG 147 (196)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECTTC
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEeCCCC
Confidence 4578999999999998886 557888887 78777765544
No 288
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=38.22 E-value=56 Score=18.59 Aligned_cols=66 Identities=5% Similarity=-0.002 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCC----CcccccccchhHHHhhcC-CCcEEEEc
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRG----PIQRAFLGSVSNYCVHNA-KCPVLVVR 150 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~----~~~~~~~gs~~~~l~~~~-~~pvliv~ 150 (154)
+.+...+...|..+. ...+ .....+..++..+|++++...-.. ..... .....+-... .+|++++-
T Consensus 17 ~~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ls 87 (140)
T 2qr3_A 17 TAVQLLLKNHFSKVI---TLSS-PVSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLFT 87 (140)
T ss_dssp HHHHHHHTTTSSEEE---EECC-HHHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHHhCCcEEE---EeCC-HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEEE
Confidence 344455555565443 2233 344556667778999999875320 11211 2334444443 48888874
No 289
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=37.77 E-value=89 Score=20.81 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEec--CChhh--HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 75 ALLGRAKEICAKHGVVAETMTEM--GDPKN--VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~--g~~~~--~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
..++.+.+.+++.|..+...... +++.+ ..++.....++|-||+.......... . -..+....+||+.+-
T Consensus 20 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~-----~-~~~~~~~giPvV~~~ 93 (297)
T 3rot_A 20 SLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSK-----S-LQRANKLNIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHH-----H-HHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH-----H-HHHHHHCCCCEEEEc
Confidence 44555556666678776654433 34443 44555666799999986543222211 1 234556689998874
No 290
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=37.70 E-value=82 Score=21.36 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=60.9
Q ss_pred EEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031713 8 VAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFG--AAPPDLLMSIQENQKKAALALLGRAKEICA 85 (154)
Q Consensus 8 v~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (154)
|+..+.-.+...++..+++|+..| --.--|.-.++...+ +.- ..+++ +........+..+...++
T Consensus 28 IACGfHAGDp~~M~~Tv~lA~~~g---V~IGAHPgypDl~GF---GRR~m~~s~~-------el~~~v~YQiGAL~a~a~ 94 (252)
T 1xw8_A 28 IACGFHAGDAQIMQACVREAIKNG---VAIGAHPSFPDRENF---GRSAMQLPPE-------TVYAQTLYQIGALATIAR 94 (252)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHT---CEEEEECCCC----------CCCCCCHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HhhcccCCCHHHHHHHHHHHHHcC---CeeecCCCCCcccCC---CCCCCCCCHH-------HHHHHHHHHHHHHHHHHH
Confidence 555666667778899999999987 233344433332222 111 12332 233334444566677777
Q ss_pred hcCCeEEEEEe----------cCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 86 KHGVVAETMTE----------MGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 86 ~~~~~~~~~v~----------~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
..|.++...-- ....+++|++.++..+.+|+++|-.+
T Consensus 95 ~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~g 141 (252)
T 1xw8_A 95 AQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAG 141 (252)
T ss_dssp HTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEETT
T ss_pred HcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 88887654321 12468889999999999999999653
No 291
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=37.56 E-value=7.4 Score=21.24 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=20.5
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+.+....+..++.++|+...-... .-.....+....++|+..++
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~~-----~~~~i~~lc~~~~Ip~~~v~ 60 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADPI-----LTSSVVSLAEDQGISVSMVE 60 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCHH-----HHHHHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHcCCeeEEEEeCCCCHH-----HHHHHHHHHHHcCCCEEEEC
Confidence 344555555566666665432211 11122344445556665554
No 292
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=37.54 E-value=58 Score=18.64 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcCC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRKP 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~~ 152 (154)
+...+...|..+. ...+.. +.++..++..+|+|++...-. ...++ .+...+-. ...+|++++-..
T Consensus 20 l~~~L~~~g~~v~---~~~~~~-~al~~~~~~~~dlvl~D~~lp-~~~g~---~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 20 LELVLRGAGYEVR---RAASGE-EALQQIYKNLPDALICDVLLP-GIDGY---TLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp HHHHHHHTTCEEE---EESSHH-HHHHHHHHSCCSEEEEESCCS-SSCHH---HHHHHHHHSGGGTTCCEEEEECT
T ss_pred HHHHHHHCCCEEE---EeCCHH-HHHHHHHhCCCCEEEEeCCCC-CCCHH---HHHHHHHcCCCcCCccEEEEecC
Confidence 3444445565432 223444 445566778999999987532 22221 13333433 235888887543
No 293
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=37.46 E-value=58 Score=18.57 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHh-cCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEc
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEK-HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVR 150 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~-~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~ 150 (154)
.+...+...|..+. ...+.. ...+..+. ..+|++++...-.+ .... .....+-... .+|++++-
T Consensus 30 ~l~~~L~~~g~~v~---~~~~~~-~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 30 LIQYHLNQLGAEVT---VHPSGS-AFFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHHHHHHTTCEEE---EESSHH-HHHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHHHcCCEEE---EeCCHH-HHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEE
Confidence 33444444465332 233443 44455666 78999999875322 2211 2334444433 48888875
No 294
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=37.43 E-value=99 Score=21.26 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEe
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVG 119 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg 119 (154)
...+..+.+.+++.|+++..-+ +|...-++.|.+.++|.|=+-
T Consensus 141 ~~~L~~~i~~L~~~GIrVSLFI---Dpd~~qI~aA~~~GAd~IELh 183 (278)
T 3gk0_A 141 FDAVRAACKQLADAGVRVSLFI---DPDEAQIRAAHETGAPVIELH 183 (278)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---CSCHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHhCcCEEEEe
Confidence 4567788888899999887655 566777889999999999883
No 295
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=37.42 E-value=89 Score=20.71 Aligned_cols=68 Identities=10% Similarity=0.022 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChh--hH---HHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPK--NV---ICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~--~~---i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
..++.+.+.+++.|..+......+++. .. .++.....++|-||+...... . ...+ .+....+|++++
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~-~l~~~~iPvV~~ 96 (290)
T 2rgy_A 25 TILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--D-----EDLD-ELHRMHPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--H-----HHHH-HHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--H-----HHHH-HHhhcCCCEEEE
Confidence 455566666667787755433233332 33 566666778999888643221 1 1223 334567898887
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
-
T Consensus 97 ~ 97 (290)
T 2rgy_A 97 N 97 (290)
T ss_dssp S
T ss_pred c
Confidence 4
No 296
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=37.14 E-value=40 Score=21.88 Aligned_cols=45 Identities=11% Similarity=-0.067 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCC--eEEEEEecCChhhH--------------HHHHHH-------hcCCCEEEEecC
Q 031713 77 LGRAKEICAKHGV--VAETMTEMGDPKNV--------------ICEAAE-------KHKIQLLIVGSH 121 (154)
Q Consensus 77 l~~~~~~~~~~~~--~~~~~v~~g~~~~~--------------i~~~a~-------~~~~dlivlg~~ 121 (154)
.+.+.+.++..|+ .-.+.+..|+..+. +-+++. ...+|+|++...
T Consensus 64 ~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 64 ARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp HHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred HHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 3455566666776 44455555664332 444442 257999999875
No 297
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP: b.43.2.1 c.85.1.1
Probab=37.06 E-value=1.1e+02 Score=23.63 Aligned_cols=82 Identities=16% Similarity=0.079 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCeEEEEEec---CC--hhhHHHHHHHhcCCCEEEEecCCCCCcccccccc
Q 031713 60 DLLMSIQENQKKAALALLGRAKEICAKH-GVVAETMTEM---GD--PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGS 133 (154)
Q Consensus 60 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~v~~---g~--~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs 133 (154)
...+.+.++....+++..+.+.+.++.. +.+++..... ++ .++...+.-++.++|.+|+-...-+. |+
T Consensus 21 ~~r~~l~~~~~~~~~~~~~~i~~~L~~~~~~pvevV~~~~~i~~~~~a~~~~e~f~~~~vd~vi~~~~tf~~------~~ 94 (591)
T 1fui_A 21 GVRESLEEQTMNMAKATAALLTEKLRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCY------GS 94 (591)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHTTTEEEEEEEESSCCC------HH
T ss_pred cchhchhHHHHHHHHHHHHHHHHHHhhcCCCCeEEEECCCccCCHHHHHHHHHHhhccCCCEEEEEcCcCCc------hH
Confidence 4556666667777777777777777643 3555554422 22 34455666777788999987654332 11
Q ss_pred hhHHHhhcC-CCcEEEEc
Q 031713 134 VSNYCVHNA-KCPVLVVR 150 (154)
Q Consensus 134 ~~~~l~~~~-~~pvliv~ 150 (154)
..+... ++|+++.-
T Consensus 95 ---e~l~~~~~~Pvli~~ 109 (591)
T 1fui_A 95 ---ETIDMDPTRPKAIWG 109 (591)
T ss_dssp ---HHSCCCSSSCEEEEE
T ss_pred ---HHHHhcCCCCEEEeC
Confidence 344555 79998873
No 298
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=37.02 E-value=57 Score=18.61 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCC-cccccccchhHHHhhcC-CCcEEEEcCC
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGP-IQRAFLGSVSNYCVHNA-KCPVLVVRKP 152 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~-~~~~~~gs~~~~l~~~~-~~pvliv~~~ 152 (154)
+.+...+...|..+. ...+.. ..++..++..+|+|++...-... ..+ -.....+-... .+|++++-..
T Consensus 20 ~~l~~~L~~~g~~v~---~~~~~~-~a~~~l~~~~~dlvi~D~~l~~~~~~g---~~~~~~l~~~~~~~~ii~~s~~ 89 (136)
T 3kto_A 20 AALSKLLSPLDVTIQ---CFASAE-SFMRQQISDDAIGMIIEAHLEDKKDSG---IELLETLVKRGFHLPTIVMASS 89 (136)
T ss_dssp HHHHHHHTTSSSEEE---EESSHH-HHTTSCCCTTEEEEEEETTGGGBTTHH---HHHHHHHHHTTCCCCEEEEESS
T ss_pred HHHHHHHHHCCcEEE---EeCCHH-HHHHHHhccCCCEEEEeCcCCCCCccH---HHHHHHHHhCCCCCCEEEEEcC
Confidence 344455555565443 223333 33445566789999998652110 111 12334444433 4888887543
No 299
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=36.92 E-value=78 Score=19.89 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=19.6
Q ss_pred hcCCeEEEEEecCChhhHHHHHHHh----cCCCEEEEe
Q 031713 86 KHGVVAETMTEMGDPKNVICEAAEK----HKIQLLIVG 119 (154)
Q Consensus 86 ~~~~~~~~~v~~g~~~~~i~~~a~~----~~~dlivlg 119 (154)
+.|.++ .....+|-.+.|.+..++ .++|+||..
T Consensus 39 ~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 39 ITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp CSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred hCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 678887 434455544444443332 379998875
No 300
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=36.82 E-value=70 Score=20.20 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=4.0
Q ss_pred EEEEecCC
Q 031713 115 LLIVGSHS 122 (154)
Q Consensus 115 livlg~~~ 122 (154)
..|.|.+.
T Consensus 67 ~~v~GNHD 74 (228)
T 1uf3_A 67 AYVPGPQD 74 (228)
T ss_dssp EEECCTTS
T ss_pred EEECCCCC
Confidence 44455554
No 301
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=36.69 E-value=98 Score=21.01 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe--EE
Q 031713 15 CRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVV--AE 92 (154)
Q Consensus 15 ~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~ 92 (154)
.....++.++++|+..| ++..+++-.+.. . . +...+...+.++++.+.++++|+. +-
T Consensus 105 ~~~~~~~~~i~~A~~lG--~~~v~~~~~~~~--~---------~--------~~~~~~~~~~l~~l~~~a~~~Gv~~~l~ 163 (303)
T 3l23_A 105 KIMEYWKATAADHAKLG--CKYLIQPMMPTI--T---------T--------HDEAKLVCDIFNQASDVIKAEGIATGFG 163 (303)
T ss_dssp HHHHHHHHHHHHHHHTT--CSEEEECSCCCC--C---------S--------HHHHHHHHHHHHHHHHHHHHTTCTTCEE
T ss_pred HHHHHHHHHHHHHHHcC--CCEEEECCCCCC--C---------C--------HHHHHHHHHHHHHHHHHHHHCCCcceEE
Confidence 34667889999999988 777666432211 0 0 123455667788888888889988 76
Q ss_pred EE
Q 031713 93 TM 94 (154)
Q Consensus 93 ~~ 94 (154)
.+
T Consensus 164 ~E 165 (303)
T 3l23_A 164 YH 165 (303)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 302
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=36.61 E-value=1.1e+02 Score=21.75 Aligned_cols=31 Identities=3% Similarity=-0.038 Sum_probs=22.8
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
...++..+++|+++|+..+ ..+|+++|=..-
T Consensus 156 ~~~~eRiar~AF~~A~~r~-rkkVt~v~KaNv 186 (349)
T 3blx_A 156 RPKTERIARFAFDFAKKYN-RKSVTAVHKANI 186 (349)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhcC-CCcEEEEeCCcc
Confidence 3567889999999999863 147888875433
No 303
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=36.58 E-value=89 Score=20.48 Aligned_cols=80 Identities=14% Similarity=0.010 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
+...++.++++|+..| ++...+|.-..... .+ .+...+...+.++++.+.++++|+.+-.+.
T Consensus 82 ~~~~~~~~i~~a~~lG--~~~v~~~~g~~~~~---------~~-------~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn 143 (278)
T 1i60_A 82 IITEFKGMMETCKTLG--VKYVVAVPLVTEQK---------IV-------KEEIKKSSVDVLTELSDIAEPYGVKIALEF 143 (278)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEEECCBCSSC---------CC-------HHHHHHHHHHHHHHHHHHHGGGTCEEEEEC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEecCCCCCC---------CC-------HHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3556778888899887 67766653211100 00 123345566677778888888898866655
Q ss_pred ecCC-----hhhHHHHHHHhcCC
Q 031713 96 EMGD-----PKNVICEAAEKHKI 113 (154)
Q Consensus 96 ~~g~-----~~~~i~~~a~~~~~ 113 (154)
..+. ..+.+.+.+++.+.
T Consensus 144 ~~~~~~~~~~~~~~~~l~~~~~~ 166 (278)
T 1i60_A 144 VGHPQCTVNTFEQAYEIVNTVNR 166 (278)
T ss_dssp CCCTTBSSCSHHHHHHHHHHHCC
T ss_pred cCCccchhcCHHHHHHHHHHhCC
Confidence 4332 34556666665543
No 304
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=36.51 E-value=1.2e+02 Score=21.78 Aligned_cols=30 Identities=7% Similarity=-0.079 Sum_probs=23.1
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
...++..+++|+++|+... .+|+++|=..-
T Consensus 164 ~~~~eRiar~AFe~A~~rr--kkVt~v~KaNv 193 (358)
T 1a05_A 164 EDEIRRIAHVAFRAAQGRR--KQLCSVDKANV 193 (358)
T ss_dssp HHHHHHHHHHHHHHHHTTT--SEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhcC--CeEEEEECCcc
Confidence 3557889999999999865 68888875433
No 305
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=36.45 E-value=60 Score=18.45 Aligned_cols=66 Identities=5% Similarity=-0.064 Sum_probs=34.2
Q ss_pred HHHHHHHhcC-CeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcCC
Q 031713 79 RAKEICAKHG-VVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRKP 152 (154)
Q Consensus 79 ~~~~~~~~~~-~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~~ 152 (154)
.+...+...| ..+. . ..+..++ .+..++..+|+|++...-.. ..+ -.....+-... .+|++++-..
T Consensus 29 ~l~~~L~~~g~~~v~-~--~~~~~~a-~~~l~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 96 (135)
T 3snk_A 29 DVATRLDALAIYDVR-V--SETDDFL-KGPPADTRPGIVILDLGGGD-LLG---KPGIVEARALWATVPLIAVSDE 96 (135)
T ss_dssp HHHHHHHHTSSEEEE-E--ECGGGGG-GCCCTTCCCSEEEEEEETTG-GGG---STTHHHHHGGGTTCCEEEEESC
T ss_pred HHHHHHhhcCCeEEE-E--eccHHHH-HHHHhccCCCEEEEeCCCCC-chH---HHHHHHHHhhCCCCcEEEEeCC
Confidence 3444444556 5443 2 2223222 33446678999999875321 121 12344454444 4898887543
No 306
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=36.33 E-value=57 Score=19.32 Aligned_cols=45 Identities=9% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~ 123 (154)
++..+.+.+.+.+.|++++..-........+. . ++|.||+|+...
T Consensus 16 ~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~---~--~~d~ii~g~pty 60 (148)
T 3f6r_A 16 ESIAQKLEELIAAGGHEVTLLNAADASAENLA---D--GYDAVLFGCSAW 60 (148)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTBCCTTTT---T--TCSEEEEEECEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEehhhCCHhHhc---c--cCCEEEEEeccc
Confidence 34555556666666776655443321111111 1 789999998643
No 307
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=36.31 E-value=72 Score=19.86 Aligned_cols=49 Identities=12% Similarity=0.072 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEecCChhhHHH-------------HHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAK-HGVVAETMTEMGDPKNVIC-------------EAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~-~~~~~~~~v~~g~~~~~i~-------------~~a~~~~~dlivlg~~~ 122 (154)
+++.+.+.+.+.+ .|++++..-........+. ...+-..+|.||+|+.-
T Consensus 16 ~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~ 78 (198)
T 3b6i_A 16 ETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPT 78 (198)
T ss_dssp HHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeCh
Confidence 4555666666666 6777666544432111110 12233489999999864
No 308
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=35.96 E-value=60 Score=18.30 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~ 151 (154)
.+...+.+.|..+... ..+..+ ..+..++..+|+|++...-.. ... -.....+-...+ +|++++-.
T Consensus 16 ~l~~~L~~~g~~v~~~--~~~~~~-a~~~~~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~ 82 (134)
T 3f6c_A 16 AIRNLLIKNDIEILAE--LTEGGS-AVQRVETLKPDIVIIDVDIPG-VNG---IQVLETLRKRQYSGIIIIVSA 82 (134)
T ss_dssp HHHHHHHHTTEEEEEE--ESSSTT-HHHHHHHHCCSEEEEETTCSS-SCH---HHHHHHHHHTTCCSEEEEEEC
T ss_pred HHHHHHhhCCcEEEEE--cCCHHH-HHHHHHhcCCCEEEEecCCCC-CCh---HHHHHHHHhcCCCCeEEEEeC
Confidence 3444455556333222 233333 334455668999999976322 221 123444544444 88887744
No 309
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=35.96 E-value=1e+02 Score=21.08 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh------------hhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP------------KNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~------------~~~i~~~a~~~~~dlivlg~~~ 122 (154)
..+.+.+.+.+.+.|.+++..-...-+ ...+.+... .+|.||+++.-
T Consensus 75 ~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~--~ADgiV~aSP~ 133 (279)
T 2fzv_A 75 RLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSE--WSEGQVWCSPE 133 (279)
T ss_dssp HHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHH--HCSEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHH--HCCeEEEEcCc
Confidence 344444555555567766553333212 455666666 89999999854
No 310
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=35.96 E-value=1.1e+02 Score=21.56 Aligned_cols=83 Identities=11% Similarity=0.037 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEec-C----Ch---------hhHHHHHHHhc-----CCCEEEEecCCCCC-ccc
Q 031713 69 QKKAALALLGRAKEICAKHGVVAETMTEM-G----DP---------KNVICEAAEKH-----KIQLLIVGSHSRGP-IQR 128 (154)
Q Consensus 69 ~~~~~~~~l~~~~~~~~~~~~~~~~~v~~-g----~~---------~~~i~~~a~~~-----~~dlivlg~~~~~~-~~~ 128 (154)
...+....+.++.+.|.+.|+++-..+.. + +. .+.+.+.++.. ++|++=+-..+... .+.
T Consensus 141 ~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g 220 (332)
T 3iv3_A 141 VNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEG 220 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcc
Confidence 44556778889999999999996554432 2 11 22255555544 99999887654321 111
Q ss_pred cccc----------chhHHHhhcCCCcEEEEcC
Q 031713 129 AFLG----------SVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 129 ~~~g----------s~~~~l~~~~~~pvliv~~ 151 (154)
+--| ....++...+++|++++-.
T Consensus 221 ~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsg 253 (332)
T 3iv3_A 221 FAEGEVVYSKEEAAQAFREQEASTDLPYIYLSA 253 (332)
T ss_dssp TCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECT
T ss_pred cccccccccHHHHHHHHHHHHhcCCCCEEEECC
Confidence 1001 1135577888999887643
No 311
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=35.88 E-value=89 Score=20.29 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+++.|..+......++.. ..+++.....++|-||+....... . .. -..+...++|++++-
T Consensus 18 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~-----~~-~~~~~~~~iPvV~~~ 89 (272)
T 3o74_A 18 ARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE-D-----DS-YRELQDKGLPVIAID 89 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS-C-----CH-HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc-H-----HH-HHHHHHcCCCEEEEc
Confidence 4455666677777888876655444543 345666677899999986543111 1 12 234566789988874
No 312
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=35.79 E-value=1.1e+02 Score=21.27 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=24.7
Q ss_pred CCCcEEEEEecCC-chHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 1 MDKKKVMVAIDES-ECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 1 m~~~~iLv~vd~~-~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
|.+.|||+...+. ..-...+..|-.|.++ | -+++++.-
T Consensus 2 m~M~~il~~~~~~~Ghv~~~~~La~~L~~~-G--heV~v~~~ 40 (402)
T 3ia7_A 2 MRQRHILFANVQGHGHVYPSLGLVSELARR-G--HRITYVTT 40 (402)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHT-T--CEEEEEEC
T ss_pred CCCCEEEEEeCCCCcccccHHHHHHHHHhC-C--CEEEEEcC
Confidence 6777888877654 4455566666666554 5 58888763
No 313
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=35.67 E-value=37 Score=23.58 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGD 99 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~ 99 (154)
...++++.+.+.+.++. ..+..||
T Consensus 47 ~~~l~~lv~~~~~~~~D--~vliaGD 70 (336)
T 2q8u_A 47 KKALDKVVEEAEKREVD--LILLTGD 70 (336)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEESC
T ss_pred HHHHHHHHHHHHHhCCC--EEEECCc
Confidence 45566666666655544 4555666
No 314
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=35.49 E-value=20 Score=20.91 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=25.4
Q ss_pred CcEEEEEecCCchH----HHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 3 KKKVMVAIDESECR----HYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 3 ~~~iLv~vd~~~~~----~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
|+++++.+..++++ ..++++|...+.. + -++.++-.-+.
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~-~--~~v~vff~~DG 43 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSAL-T--DDLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTT-C--SCEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhC-C--CCEEEEEehHH
Confidence 46789999887764 5566666655543 3 47777766443
No 315
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=35.48 E-value=89 Score=20.16 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=16.3
Q ss_pred CCCcEEEEEecCCchHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDESECRHYALQWALEN 26 (154)
Q Consensus 1 m~~~~iLv~vd~~~~~~~~l~~a~~l 26 (154)
|...++.++.|+.+... +++.+-.+
T Consensus 4 m~~~~lilalD~~~~~~-~~~~~~~~ 28 (218)
T 3jr2_A 4 MTKPMIQIALDQTNLTD-AVAVASNV 28 (218)
T ss_dssp -CCCEEEEEECCSSHHH-HHHHHHHH
T ss_pred CCCCCeEEEeCCCCHHH-HHHHHHHh
Confidence 55678999999876543 55555443
No 316
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=35.35 E-value=1.2e+02 Score=21.56 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+.+.|..+.... .+.....++.....++|-||+... .......+...++||+++-
T Consensus 40 ~~l~~gi~~~a~~~g~~~~i~~--~~~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~ 104 (412)
T 4fe7_A 40 RQVVEGVGEYLQASQSEWDIFI--EEDFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVG 104 (412)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEE--CC-CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHHHhcCCCeEEEe--cCCccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEec
Confidence 3455666666666676655443 222334466677789999998321 1122345667789998873
No 317
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=35.31 E-value=95 Score=20.41 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=24.6
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
..+++...+.++|.|.+-........+-..-.....+.+..++||++.
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ 85 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 85 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEe
Confidence 345555566677777664432221111111134456666667777664
No 318
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=35.31 E-value=68 Score=18.74 Aligned_cols=62 Identities=8% Similarity=0.101 Sum_probs=33.8
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...+++.|..+.. ...+..+ -++.+++..+|++++.-. ..... |-..-+.+++..+||+++-
T Consensus 25 ~~~L~~~G~~v~~--~a~~g~e-Al~~~~~~~~DlvllDi~-mP~~~----G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 25 EDTLCELGHEVAA--TASRMQE-ALDIARKGQFDIAIIDVN-LDGEP----SYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHHHCCCCCB--CSCCHHH-HHHHHHHCCSSEEEECSS-SSSCC----SHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHHCCCEEEE--EECCHHH-HHHHHHhCCCCEEEEecC-CCCCC----HHHHHHHHHcCCCCEEEEe
Confidence 3344445654311 1233334 445667789999999875 22222 2222344556678988774
No 319
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=35.26 E-value=87 Score=19.95 Aligned_cols=40 Identities=10% Similarity=0.032 Sum_probs=26.4
Q ss_pred CCcEEEEEecC---CchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 2 DKKKVMVAIDE---SECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 2 ~~~~iLv~vd~---~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
|+++|+|-+.. ...+..+++++.+++.. + .++.++.+.+.
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~~-~--~~~~~idl~dL 43 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAEG-R--LEFHLLHIGDL 43 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHTT-T--EEEEECCGGGS
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhccC-C--CEEEEEecccC
Confidence 56778776643 23366788888888764 4 68888877553
No 320
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=35.21 E-value=94 Score=20.36 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+..+.+.+.+++.|++++..... ...........++|+.+.|...
T Consensus 142 ~~~a~~iq~~l~~iGi~v~i~~~~---~~~~~~~~~~~~~d~~~~~w~~ 187 (258)
T 3lvu_A 142 QTVLEIYTRALERLGIAAQIEKVD---NAQYTARVAELDFDLTPFRRDL 187 (258)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEEEC---HHHHHHHHHTTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCeeEEEecC---HHHHHHHhccCCccEEEecCCC
Confidence 344556667777789988877654 2334445577899999988753
No 321
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=35.09 E-value=1.5e+02 Score=22.54 Aligned_cols=74 Identities=8% Similarity=-0.042 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEe-----cCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCC
Q 031713 70 KKAALALLGRAKEICAKHGVVAETMTE-----MGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKC 144 (154)
Q Consensus 70 ~~~~~~~l~~~~~~~~~~~~~~~~~v~-----~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~ 144 (154)
....-..+..+.+.+++.|.++...-. .|++.+.|.+.+++.+++-|.+.... +.. .++-++..++
T Consensus 62 i~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~----e~r-----~~~~l~~~gi 132 (522)
T 3zxs_A 62 IALILAAMRKFARRLQERGFRVAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPG----DWR-----LIEALEAMPL 132 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCS----CHH-----HHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcc----hHH-----HHHHHHHcCC
Confidence 334456677778888888988766432 37899999999999999999988322 211 1333334488
Q ss_pred cEEEEcCC
Q 031713 145 PVLVVRKP 152 (154)
Q Consensus 145 pvliv~~~ 152 (154)
+|-+++..
T Consensus 133 ~v~~~~~~ 140 (522)
T 3zxs_A 133 PVRFLPDD 140 (522)
T ss_dssp CEEEECCC
T ss_pred cEEEeCCC
Confidence 88887653
No 322
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=35.07 E-value=81 Score=20.99 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=22.7
Q ss_pred cCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 111 HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 111 ~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.++|++|+-..+ +.......+.....+++...+||++|=+
T Consensus 130 ~~~D~vlIEGag-Gl~~pl~~~~~~adlA~~l~~pVILV~~ 169 (242)
T 3qxc_A 130 KTYDLVIVEGAG-GLCVPITLEENMLDFALKLKAKMLLISH 169 (242)
T ss_dssp GTCSEEEEECCS-CTTCBSSSSCBHHHHHHHHTCEEEEEEC
T ss_pred hcCCEEEEECCC-CccccccccchHHHHHHHcCCCEEEEEc
Confidence 478888875432 1222111223345678888888887743
No 323
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=35.04 E-value=63 Score=18.29 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc--CCCcEEEEcCC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN--AKCPVLVVRKP 152 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~--~~~pvliv~~~ 152 (154)
.+...+.+.|..+.. ..+..+++........+|+|++...-.+ .... .....+-+. ..+|++++-..
T Consensus 22 ~l~~~L~~~g~~v~~---~~~~~~a~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 22 ALILYLKSRGIDAVG---ADGAEEARLYLHYQKRIGLMITDLRMQP-ESGL---DLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp HHHHHHHHTTCCEEE---ESSHHHHHHHHHHCTTEEEEEECSCCSS-SCHH---HHHHHHHTSTTTTCEEEEEESS
T ss_pred HHHHHHHHcCceEEE---eCCHHHHHHHHHhCCCCcEEEEeccCCC-CCHH---HHHHHHHhcCCCCCCEEEEeCC
Confidence 334444455655432 3445555544444444999999875322 2211 234445443 34888887543
No 324
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=34.87 E-value=69 Score=18.66 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=27.6
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+...+..++..+|+|++...-.. ... -.....+-...+ +||+++-..
T Consensus 50 ~~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 50 GAAALELIKAHLPDVALLDYRMPG-MDG---AQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCSS-SCH---HHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCeEEEEEcc
Confidence 344455666678999999976322 221 123344444443 888887543
No 325
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=34.81 E-value=78 Score=20.43 Aligned_cols=39 Identities=21% Similarity=0.294 Sum_probs=28.4
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCc
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCP 145 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~p 145 (154)
-..|++.|++.+..+|+++..++.+. ..+-.++++.+.+
T Consensus 138 ~~~Lld~A~~~naqvvll~~~~RqG~------GnAl~vl~~agv~ 176 (189)
T 2l8b_A 138 TLTLLDGAARHNVQVLITDSGQRTGT------GSALMAMKDAGVN 176 (189)
T ss_dssp HHHHHHHHHHTTCCEEEEESSTTTCS------HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCEEEEeCCcccccC------CCHHHHHHhCCCc
Confidence 45677889999999999998765444 3455677777654
No 326
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=34.77 E-value=13 Score=20.82 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.++ +......|+.+..- +-...++|++|+.....+... .......+-...++||=++.
T Consensus 17 ~~l~~~~~--v~~v~LFGS~arG~--~~~~SDiDl~V~~~~~~~~~~---~~~l~~~l~~~l~~~vDlv~ 79 (98)
T 1wot_A 17 LSLCARHG--AVRVRVFGSVARGE--AREDSDLDLLVAFEEGRTLLD---HARLKLALEGLLGVRVDIVS 79 (98)
T ss_dssp HHHHHHHT--CSSCEECSHHHHTC--CCTTCCCEEEECCCSSCCHHH---HHHHHHHHHHHSCSCCEEEE
T ss_pred HHHHHHcC--CcEEEEEccccCCC--CCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHHcCCCEEEEE
Confidence 33334445 34456678776652 333579999997754332211 22334444444456655553
No 327
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=34.76 E-value=95 Score=20.28 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHH-HhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNY-CVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~-l~~~~~~pvliv~ 150 (154)
...++.+.+.+++.|..+......++. ...+++.....++|-||+... . ...-. .+....+|++++-
T Consensus 24 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~-----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 24 TLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----N-----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----G-----HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----C-----hHHHHHHHHcCCCCEEEEe
Confidence 455666777777788887665544444 345666777789999999651 1 11123 5566789998874
No 328
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=34.67 E-value=70 Score=18.68 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~ 151 (154)
.+...+...|..+. ...+ ........++..+|+|++...-.. .... .....+-... .+|++++-.
T Consensus 22 ~l~~~L~~~g~~v~---~~~~-~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 22 SLKRLIKRLGCNII---TFTS-PLDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp HHHHHHHTTTCEEE---EESC-HHHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHHHHHcCCeEE---EeCC-HHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 34444444565432 2333 344556667778999999975322 2211 2344444443 488888743
No 329
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=34.61 E-value=1.1e+02 Score=21.80 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCCeEEEEE-ecCC-h---hhHHHHHHHhcCCCEEE-Eec
Q 031713 77 LGRAKEICAKHGVVAETMT-EMGD-P---KNVICEAAEKHKIQLLI-VGS 120 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v-~~g~-~---~~~i~~~a~~~~~dliv-lg~ 120 (154)
++++.+.+++.|+.+...- ..++ . .+.+.+.+++.++|+|| +|-
T Consensus 58 ~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 58 LDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3455556666677643321 2333 2 34455567778999988 553
No 330
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=34.44 E-value=1.1e+02 Score=20.86 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=35.4
Q ss_pred HhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC---CCCcccccccchh-HHHhhcCCCcEEEEcC
Q 031713 85 AKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS---RGPIQRAFLGSVS-NYCVHNAKCPVLVVRK 151 (154)
Q Consensus 85 ~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~---~~~~~~~~~gs~~-~~l~~~~~~pvliv~~ 151 (154)
.+.|+++.... .+ .+....+ ++|.+++|+.+ .+.+... .|... ..+.++..+|++++-+
T Consensus 157 ~~~gI~vtli~--ds---a~~~~m~--~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~vp~~V~a~ 219 (276)
T 1vb5_A 157 EFSGIEFEVIT--DA---QMGLFCR--EASIAIVGADMITKDGYVVNK-AGTYLLALACHENAIPFYVAAE 219 (276)
T ss_dssp HHTTCCEEEEC--GG---GHHHHHT--TCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEECC
T ss_pred HHCCCCEEEEc--HH---HHHHHHc--cCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcCCCEEEecc
Confidence 34588775543 22 2222334 89999999975 3333333 45433 3455777899999854
No 331
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=34.39 E-value=28 Score=20.13 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=22.0
Q ss_pred HHHHhcCCeEEEEEecCC-hhhHHHH-HHHhcCCCEEEEecCC
Q 031713 82 EICAKHGVVAETMTEMGD-PKNVICE-AAEKHKIQLLIVGSHS 122 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~-~~~~i~~-~a~~~~~dlivlg~~~ 122 (154)
+..++.|+++++...... +...|.. .+. .+|++|+....
T Consensus 27 ~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 67 (106)
T 2r4q_A 27 EKAKELGVEIKVETNGSSGIKHKLTAQEIE--DAPAIIVAADK 67 (106)
T ss_dssp HHHHHHTCCEEEEEEETTEEESCCCHHHHH--HCSCEEEEESS
T ss_pred HHHHHCCCeEEEEecCCCCccCCCCHHHHH--hCCEEEEEeCC
Confidence 333445777666655432 3333333 455 78888887754
No 332
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=34.27 E-value=66 Score=18.26 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=27.4
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
....+..++..+|++++...-.+..... .....+-....+|++++-..
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 3444555667899999997532112221 23344444456898887543
No 333
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=34.19 E-value=60 Score=22.89 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=42.3
Q ss_pred HHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcc-cccccchhHHHhhc-CCCcEEEE
Q 031713 81 KEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQ-RAFLGSVSNYCVHN-AKCPVLVV 149 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~-~~~~gs~~~~l~~~-~~~pvliv 149 (154)
.+.+++.+.-+----..+ ...+++++.|++.+..+|+-.+.+..... .-++.......... ..+||.+-
T Consensus 10 l~~A~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 81 (323)
T 2isw_A 10 LGEARKHKYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIH 81 (323)
T ss_dssp HHHHHHTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 333444444443333344 78999999999999999988776421111 12334555666666 77898763
No 334
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=34.08 E-value=47 Score=21.70 Aligned_cols=37 Identities=8% Similarity=0.105 Sum_probs=26.1
Q ss_pred CCcEEEEEecCCchHHH-HHHHHHHHcccCCCCCeEEEEEe
Q 031713 2 DKKKVMVAIDESECRHY-ALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~-~l~~a~~la~~~~~~~~l~~l~v 41 (154)
.-++|++++.++-..-+ +++..-.+.+ .| .+++++--
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~-~g--~eV~vv~T 41 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIA-EG--AEVRPVVS 41 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHH-TT--CEEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHh-CC--CEEEEEEe
Confidence 34799999999977665 6766655555 35 68777643
No 335
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=33.84 E-value=62 Score=20.04 Aligned_cols=84 Identities=14% Similarity=0.085 Sum_probs=49.8
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhc---------cc-C-CCCC------chHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQ---------AS-M-FGAA------PPDLLMS 64 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~---------~~-~-~~~~------~~~~~~~ 64 (154)
.-+.+++.+..+.++...++ +++.|+..| +++.++.-.+....... +. . +... -.-+...
T Consensus 86 ~~~d~~i~iS~sG~t~~~~~-~~~~ak~~g--~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~ 162 (187)
T 3sho_A 86 RPTDLMIGVSVWRYLRDTVA-ALAGAAERG--VPTMALTDSSVSPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAE 162 (187)
T ss_dssp CTTEEEEEECCSSCCHHHHH-HHHHHHHTT--CCEEEEESCTTSHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CCEEEEeCCCCCcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHH
Confidence 34678999999998888776 557888877 78887776544332110 00 0 0000 1122234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 031713 65 IQENQKKAALALLGRAKEICAKHG 88 (154)
Q Consensus 65 ~~~~~~~~~~~~l~~~~~~~~~~~ 88 (154)
+.....++..+.++++.+.+++.|
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~ 186 (187)
T 3sho_A 163 IAVREPERALAVLREVDRLYREQG 186 (187)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHHHHcC
Confidence 444455566677777777776654
No 336
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=33.77 E-value=67 Score=18.25 Aligned_cols=46 Identities=11% Similarity=0.038 Sum_probs=27.1
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcC
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRK 151 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~ 151 (154)
....+..++..+|+|++...-.. ... -.....+-. ...+|++++-.
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~ 92 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMVG-MDG---FSICHRIKSTPATANIIVIAMTG 92 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCTT-SCH---HHHHHHHHTSTTTTTSEEEEEES
T ss_pred HHHHHHHHhcCCCEEEEecccCC-CcH---HHHHHHHHhCccccCCcEEEEeC
Confidence 44455666778999999975322 221 123444544 23488888754
No 337
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=33.76 E-value=89 Score=19.66 Aligned_cols=42 Identities=17% Similarity=0.155 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHH----HHhcCCCEEEEe
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEA----AEKHKIQLLIVG 119 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~----a~~~~~dlivlg 119 (154)
.-+...+++.|.++......+|-.+.|.+. +++.++|+||..
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 344556667788866655555544444443 332248998875
No 338
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=33.63 E-value=92 Score=19.76 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCeEEEEEec-CChhhHHHHHHHhcCCCEEEEe
Q 031713 77 LGRAKEICAKHGVVAETMTEM-GDPKNVICEAAEKHKIQLLIVG 119 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~-g~~~~~i~~~a~~~~~dlivlg 119 (154)
++++.+.++++|.++-..+.. .++. ..++.+.+.++|.|.+.
T Consensus 92 ~~~~~~~~~~~g~~~~v~~~~~~t~~-~~~~~~~~~g~d~i~v~ 134 (211)
T 3f4w_A 92 IQSCIRAAKEAGKQVVVDMICVDDLP-ARVRLLEEAGADMLAVH 134 (211)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCSSHH-HHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHH-HHHHHHHHcCCCEEEEc
Confidence 345555555667665432222 2232 34455666789987664
No 339
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=33.49 E-value=88 Score=19.48 Aligned_cols=44 Identities=16% Similarity=-0.015 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCC
Q 031713 74 LALLGRAKEICAK-HGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 74 ~~~l~~~~~~~~~-~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~ 123 (154)
++..+.+.+.+.+ .|++++..-..... ..... ++|.||+|+.-.
T Consensus 19 ~~~a~~i~~~l~~~~g~~v~~~~l~~~~----~~~l~--~aD~ii~gsP~y 63 (188)
T 2ark_A 19 KKMAELVAEGARSLEGTEVRLKHVDEAT----KEDVL--WADGLAVGSPTN 63 (188)
T ss_dssp HHHHHHHHHHHHTSTTEEEEEEETTTCC----HHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEhhhCC----HHHHH--hCCEEEEEeCcc
Confidence 4455556666665 67666554333322 22233 689999998643
No 340
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=33.42 E-value=86 Score=23.63 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKPV 153 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~~ 153 (154)
.+....+.+.+.++..||.-+. .|.++..+.+.-| |||+.+-+..
T Consensus 382 ia~aa~~~a~~~~a~aIv~~T~---------sG~ta~~isr~RP~~pI~a~t~~~ 427 (500)
T 1a3w_A 382 VAASAVAAVFEQKAKAIIVLST---------SGTTPRLVSKYRPNCPIILVTRCP 427 (500)
T ss_dssp HHHHHHHHHHHHTCSCEEEECS---------SSHHHHHHHHTCCSSCEEEEESCT
T ss_pred HHHHHHHHHHhcCCCEEEEECC---------CchHHHHHHhhCCCCCEEEEcCCH
Confidence 4555566778889998887765 2557777777776 9999986543
No 341
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=33.35 E-value=89 Score=20.25 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=28.3
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
.+.++.+.+.++|.|++..........-+.-.....+....++||++.
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~ 204 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIAS 204 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEe
Confidence 345566777789999887654322221111123455666678888764
No 342
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=33.32 E-value=1e+02 Score=22.31 Aligned_cols=81 Identities=15% Similarity=-0.026 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
-+.++++|-.+++ .| +.+..+.++.+..... .|...+ .+.+..+.+.+++.|+.+-+.+
T Consensus 155 ~e~a~~~a~~~k~-aG--a~~vk~q~fkprts~~---~f~gl~---------------~egl~~L~~~~~~~Gl~~~te~ 213 (385)
T 3nvt_A 155 YEQVAAVAESIKA-KG--LKLIRGGAFKPRTSPY---DFQGLG---------------LEGLKILKRVSDEYGLGVISEI 213 (385)
T ss_dssp HHHHHHHHHHHHH-TT--CCEEECBSSCCCSSTT---SCCCCT---------------HHHHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHHH-cC--CCeEEcccccCCCChH---hhcCCC---------------HHHHHHHHHHHHHcCCEEEEec
Confidence 3456666655544 56 7877777765432211 111111 1233455566777798876665
Q ss_pred ecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 96 EMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 96 ~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
..-.. ++++.+. +|++=+|+..
T Consensus 214 ~d~~~----~~~l~~~-vd~lkIgs~~ 235 (385)
T 3nvt_A 214 VTPAD----IEVALDY-VDVIQIGARN 235 (385)
T ss_dssp CSGGG----HHHHTTT-CSEEEECGGG
T ss_pred CCHHH----HHHHHhh-CCEEEECccc
Confidence 44322 3334444 8888888764
No 343
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=33.20 E-value=44 Score=19.39 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=21.4
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
.+...+..+..++.++|+........ -+-...+....++|+..+
T Consensus 31 ~~~t~kai~~gkakLVilA~D~~~~~-----~~~i~~~c~~~~ipv~~~ 74 (112)
T 3iz5_f 31 YKTVLKTLRSSLGKLIILANNCPPLR-----KSEIETYAMLAKISVHHF 74 (112)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCCHHH-----HHHHHHHHHHTTCCEECC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHH-----HHHHHHHHHHcCCcEEEe
Confidence 34455555666666666665432111 112233445555666555
No 344
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=33.16 E-value=64 Score=19.89 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=30.0
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
-+.+++.+..+.++...++ +++.|+..| +++.++.-.+.
T Consensus 96 ~~d~vI~iS~sG~t~~~~~-~~~~ak~~g--~~vi~IT~~~~ 134 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITA-LIPVLKRLH--VPLICITGRPE 134 (183)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHTTT--CCEEEEESCTT
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CCEEEEECCCC
Confidence 4578999999999888885 557888877 78877766544
No 345
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=32.91 E-value=72 Score=19.93 Aligned_cols=40 Identities=15% Similarity=0.002 Sum_probs=27.2
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
+++||+......++..+++...+-+...| .++.++.+.+.
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~~g--~~v~~~~l~~~ 43 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEEAG--AEVKIRRVRET 43 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHHHS--CEEEEEECCCC
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHhCC--CEEEEEehhHh
Confidence 45777766544556677777777666555 68888887654
No 346
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=32.45 E-value=92 Score=19.39 Aligned_cols=77 Identities=16% Similarity=0.060 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecCC--hhhHHHHHHHh-----cCCCEEEE-ecC--CCCCcccccccchhHHHh-
Q 031713 71 KAALALLGRAKEICAKHGVVAETMTEMGD--PKNVICEAAEK-----HKIQLLIV-GSH--SRGPIQRAFLGSVSNYCV- 139 (154)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~~~~~~v~~g~--~~~~i~~~a~~-----~~~dlivl-g~~--~~~~~~~~~~gs~~~~l~- 139 (154)
.-.+.+++.+.+.+.+.|.+++..-+.|. ..-.+...++. .++|-+|. |.- |.+.--.+.-..++.-|+
T Consensus 25 ~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~ 104 (157)
T 2i0f_A 25 DLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRALTD 104 (157)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHH
Confidence 34567788888888888877777667784 34444556766 68887664 553 333333334444444343
Q ss_pred --hcCCCcEE
Q 031713 140 --HNAKCPVL 147 (154)
Q Consensus 140 --~~~~~pvl 147 (154)
-+..+||.
T Consensus 105 vsl~~~vPV~ 114 (157)
T 2i0f_A 105 LSVEESIAIG 114 (157)
T ss_dssp HHHHTTCCEE
T ss_pred HHhhcCCCEE
Confidence 34567765
No 347
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=32.34 E-value=1.3e+02 Score=20.97 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCeEEEEEec--C-ChhhHHHHHHHhcCCCEEEEec
Q 031713 77 LGRAKEICAKHGVVAETMTEM--G-DPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~--g-~~~~~i~~~a~~~~~dlivlg~ 120 (154)
.+.+.+.+++.|+++...... + .-....+..++..++|.|++..
T Consensus 160 ~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~ 206 (392)
T 3lkb_A 160 VEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQN 206 (392)
T ss_dssp HHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEec
Confidence 344455555567765433322 2 2334445555566788888743
No 348
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.22 E-value=66 Score=17.65 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=33.2
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcC
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRK 151 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~ 151 (154)
...+...|..+. ....+..+ ..+..++..+|++++...-. ...+ -.....+-+.. .+|++++-.
T Consensus 19 ~~~l~~~g~~vv--~~~~~~~~-a~~~~~~~~~dlil~D~~l~-~~~g---~~~~~~l~~~~~~~~ii~~s~ 83 (120)
T 1tmy_A 19 KDIITKAGYEVA--GEATNGRE-AVEKYKELKPDIVTMDITMP-EMNG---IDAIKEIMKIDPNAKIIVCSA 83 (120)
T ss_dssp HHHHHHTTCEEE--EEESSHHH-HHHHHHHHCCSEEEEECSCG-GGCH---HHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHhhcCcEEE--EEECCHHH-HHHHHHhcCCCEEEEeCCCC-CCcH---HHHHHHHHhhCCCCeEEEEeC
Confidence 334444565431 12334433 44455667899999987532 1121 12344454443 488888754
No 349
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=32.12 E-value=64 Score=19.97 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=30.1
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
-+.+++.+..|..+...++ +++.|+..| +++..+.-.+.
T Consensus 110 ~~Dvvi~iS~sG~t~~~~~-~~~~ak~~g--~~vi~iT~~~~ 148 (188)
T 1tk9_A 110 EKDVLIGISTSGKSPNVLE-ALKKAKELN--MLCLGLSGKGG 148 (188)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEEEGGG
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEeCCCC
Confidence 4678999999999888875 557888877 78877766544
No 350
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=32.11 E-value=1.1e+02 Score=20.02 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=35.2
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcCC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRKP 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~~ 152 (154)
+...+...|..+. ...+.. ..+..+.+..+|+|++...-.. ..+ -.....+-....+||+++-..
T Consensus 53 l~~~L~~~g~~v~---~~~~~~-~al~~~~~~~~DlvllD~~lp~-~~G---~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 53 LRMDLTDAGYVVD---HADSAM-NGLIKAREDHPDLILLDLGLPD-FDG---GDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp HHHHHHTTTCEEE---EESSHH-HHHHHHHHSCCSEEEEECCSCH-HHH---HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHCCCEEE---EeCCHH-HHHHHHhcCCCCEEEEcCCCCC-CCH---HHHHHHHHcCCCCCEEEEECC
Confidence 3344445554221 223444 4455667778999999875221 111 123445555455999988543
No 351
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=32.06 E-value=67 Score=17.69 Aligned_cols=47 Identities=6% Similarity=0.117 Sum_probs=27.9
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
........+...+|++++...-.+ ..+. .....+-...++|++++-.
T Consensus 35 ~~~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~ 81 (122)
T 1zgz_A 35 GAGLREIMQNQSVDLILLDINLPD-ENGL---MLTRALRERSTVGIILVTG 81 (122)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHTTCCCEEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEEC
Confidence 344556667778999999875322 2221 2334444444588888744
No 352
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=32.04 E-value=1.1e+02 Score=20.04 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=13.6
Q ss_pred hHHHHHHHhcCCCEEEEecCC
Q 031713 102 NVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~ 122 (154)
..+.+... .+|.||+|+.-
T Consensus 71 ~~~~~~l~--~AD~iI~~sP~ 89 (242)
T 1sqs_A 71 GVIKKELL--ESDIIIISSPV 89 (242)
T ss_dssp HHHHHHHH--HCSEEEEEEEE
T ss_pred HHHHHHHH--HCCEEEEEccc
Confidence 34445555 89999999864
No 353
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=32.01 E-value=1.4e+02 Score=21.44 Aligned_cols=27 Identities=19% Similarity=0.034 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHcccC------------CCCCeEEEEEe
Q 031713 14 ECRHYALQWALENLGDA------------ISKSDLIIFTA 41 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~------------~~~~~l~~l~v 41 (154)
..++..+++|+++|+.. + ..+|+++|=
T Consensus 162 ~~~eRIar~AFe~A~~r~~~~~~~~~~~~~-rkkVt~v~K 200 (366)
T 3ty4_A 162 EASTKIGKMAFEIAKSRQKIRESGTYSIHK-KPLVTIIHK 200 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCSCS-SCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHhcCccccccccccCC-CCeEEEEEC
Confidence 45778888999998765 1 157888874
No 354
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.78 E-value=1.1e+02 Score=20.26 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+.+.|..+......++. ...+++.....++|-||+...... ...-..+...++|++++-.
T Consensus 28 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 28 INVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEEEECC
Confidence 455667777777888766443222222 345667777789999998643211 1123345677899988743
No 355
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=31.74 E-value=1.4e+02 Score=21.33 Aligned_cols=31 Identities=10% Similarity=0.207 Sum_probs=22.7
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
...++..+++|+++|+..+ ..+|+++|=..-
T Consensus 162 ~~~~eRiar~AFe~A~~r~-rkkVt~v~KaNv 192 (354)
T 3blx_B 162 RDASERVIRYAFEYARAIG-RPRVIVVHKSTI 192 (354)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CSEEEEEESCTT
T ss_pred HHHHHHHHHHHHHHHHhcC-CCeEEEEECCcc
Confidence 3567889999999999863 157888875443
No 356
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=31.70 E-value=1.5e+02 Score=21.66 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=21.0
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEe
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTA 41 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v 41 (154)
..++..+++|+++|+... .+|+++|=
T Consensus 207 ~~~eRIar~AFe~A~~rr--kkVT~v~K 232 (405)
T 3r8w_A 207 HEIDRIARVAFETARKRR--GKLCSVDK 232 (405)
T ss_dssp HHHHHHHHHHHHHHHTTT--SEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcC--CeEEEEEC
Confidence 457889999999998755 68888874
No 357
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=31.67 E-value=52 Score=23.00 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=40.2
Q ss_pred HhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCccc-ccccchhHHHhhcCCCcEEEE
Q 031713 85 AKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQR-AFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 85 ~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~~-~~~gs~~~~l~~~~~~pvliv 149 (154)
++.+.-+----..+ ...+++++.|++.+..+|+-.+.+...... .++......... .++||.+-
T Consensus 13 ~~~~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPValH 78 (305)
T 1rvg_A 13 REEGYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAVH 78 (305)
T ss_dssp HHHTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred HHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 33343333333344 689999999999999999987764322211 234456666666 88898763
No 358
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=31.52 E-value=90 Score=19.90 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=32.0
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCc
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEF 46 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~ 46 (154)
-+.+++.+..|.++...++ +++.|+..| +++..+.-.+...
T Consensus 114 ~~Dvvi~iS~SG~t~~~~~-~~~~ak~~g--~~vi~iT~~~~s~ 154 (201)
T 3trj_A 114 EDDILLVITTSGDSENILS-AVEEAHDLE--MKVIALTGGSGGA 154 (201)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEEETTCCG
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CcEEEEECCCCCH
Confidence 4678999999999888886 557888877 7888887765544
No 359
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=31.48 E-value=87 Score=18.81 Aligned_cols=45 Identities=4% Similarity=0.018 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCeEEEEEe--cCChhhHHHHHHHhcCCCEEEEecC
Q 031713 77 LGRAKEICAKHGVVAETMTE--MGDPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~--~g~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
.+.+...+...|+.++.... .......|.+.....-.=+||+|.+
T Consensus 24 A~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~k 70 (130)
T 1v95_A 24 AESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQQ 70 (130)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECHH
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEech
Confidence 35666677778999998775 3467777777766666777888864
No 360
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=31.38 E-value=91 Score=22.63 Aligned_cols=47 Identities=23% Similarity=0.246 Sum_probs=34.2
Q ss_pred HHHHHhcCCCEEEEecCCCC-C---cccccccchhHHHhhcCCCcEEEEcC
Q 031713 105 CEAAEKHKIQLLIVGSHSRG-P---IQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 105 ~~~a~~~~~dlivlg~~~~~-~---~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
++++-+.++.+|++.+-+|. . ...+.+..++.+|-+...+||..+++
T Consensus 44 I~~ll~~gakvil~SHlGRP~kG~~~~~~SL~pva~~L~~lLg~~V~f~~d 94 (387)
T 1zmr_A 44 IELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKD 94 (387)
T ss_dssp HHHHHHTTCEEEEECCCSSCBTTBCCGGGCSHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHCCCEEEEEccCCCCCCCCcCCccCHHHHHHHHHHHhCCCCEECcc
Confidence 35566678887777765655 1 34466778899999999999988865
No 361
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=31.37 E-value=48 Score=23.18 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCCCcc-cccccchhHHHhhc-CCCcEEEE
Q 031713 84 CAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRGPIQ-RAFLGSVSNYCVHN-AKCPVLVV 149 (154)
Q Consensus 84 ~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~~~~-~~~~gs~~~~l~~~-~~~pvliv 149 (154)
+++.+.-+----..+ ...+++++.|++.+..+|+-.+.+..... ..++.......... ..+||.+-
T Consensus 12 A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 80 (307)
T 3n9r_A 12 AHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH 80 (307)
T ss_dssp HHHHTCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEE
T ss_pred HHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 333343333333344 78999999999999999987765421111 12334455555555 77898763
No 362
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=31.33 E-value=53 Score=23.53 Aligned_cols=71 Identities=15% Similarity=0.218 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCeEEEEEecC-ChhhHHHHHHHhcCCCEEEEecCCCC------Cccc------cc-----ccchhHHHhh
Q 031713 79 RAKEICAKHGVVAETMTEMG-DPKNVICEAAEKHKIQLLIVGSHSRG------PIQR------AF-----LGSVSNYCVH 140 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g-~~~~~i~~~a~~~~~dlivlg~~~~~------~~~~------~~-----~gs~~~~l~~ 140 (154)
++.+.+++.+.-+--.-..+ ...+++++.|++.+..+|+-.+.+.. .+.. .. +...+..+..
T Consensus 19 ~ll~~A~~~~yAVpAfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A~ 98 (358)
T 1dos_A 19 KVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAE 98 (358)
T ss_dssp HHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHHH
Confidence 33344444454443333444 78999999999999999988765421 1111 11 2334455667
Q ss_pred cCCCcEEEE
Q 031713 141 NAKCPVLVV 149 (154)
Q Consensus 141 ~~~~pvliv 149 (154)
+.++||.+-
T Consensus 99 ~~~VPVaLH 107 (358)
T 1dos_A 99 HYGVPVILH 107 (358)
T ss_dssp HHTCEEEEE
T ss_pred HCCCCEEEE
Confidence 788998764
No 363
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=30.96 E-value=1.2e+02 Score=23.04 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+....+.|...++..||.-+.. |.++..+.+.-| |||+.+-+.
T Consensus 406 ia~aa~~~A~~l~a~aIv~~T~S---------G~TA~~vSr~RP~~PIia~T~~ 450 (520)
T 3khd_A 406 VARSAVETAESIQASLIIALTET---------GYTARLIAKYKPSCTILALSAS 450 (520)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhcCCCCCEEEEcCC
Confidence 44555567888899999887652 567777887777 999988553
No 364
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=30.90 E-value=1.2e+02 Score=20.12 Aligned_cols=79 Identities=9% Similarity=-0.107 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
....++.++++|...| ++...+|.-....... .+...+...+.++++...++++|+.+-.+.
T Consensus 82 ~~~~~~~~i~~A~~lG--~~~v~~~~g~~~~~~~----------------~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 143 (286)
T 3dx5_A 82 TIEKCEQLAILANWFK--TNKIRTFAGQKGSADF----------------SQQERQEYVNRIRMICELFAQHNMYVLLET 143 (286)
T ss_dssp HHHHHHHHHHHHHHHT--CCEEEECSCSSCGGGS----------------CHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEcCCCCCcccC----------------cHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 3456677888888877 6766665422211000 012345556667777888888888866655
Q ss_pred ecCC---hhhHHHHHHHhcC
Q 031713 96 EMGD---PKNVICEAAEKHK 112 (154)
Q Consensus 96 ~~g~---~~~~i~~~a~~~~ 112 (154)
..+. ..+.+.++.++.+
T Consensus 144 ~~~~~~~~~~~~~~l~~~~~ 163 (286)
T 3dx5_A 144 HPNTLTDTLPSTLELLGEVD 163 (286)
T ss_dssp CTTSTTSSHHHHHHHHHHHC
T ss_pred CCCcCcCCHHHHHHHHHhcC
Confidence 4432 3455666666544
No 365
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=30.70 E-value=1.1e+02 Score=19.87 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+++.|..+......++. ....++.....++|-||+...... . .... .+...++|++++-.
T Consensus 15 ~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~-----~~~~-~~~~~~iPvV~~~~ 86 (276)
T 2h0a_A 15 RRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT--E-----RFEE-GRLPTERPVVLVDA 86 (276)
T ss_dssp HHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC--------------CCSCSSCEEEESS
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC--H-----HHHH-HHhhcCCCEEEEec
Confidence 345666777777778765443222333 234556666678999888654322 1 1112 34456789888743
No 366
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=30.69 E-value=66 Score=21.06 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=14.4
Q ss_pred CCcEEEEEecCCchHHHHHHHH
Q 031713 2 DKKKVMVAIDESECRHYALQWA 23 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a 23 (154)
.++.|+|.-..+...+..+..+
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~ 24 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTK 24 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHH
T ss_pred CCcEEEEEeCCCCCCHHHHHHH
Confidence 3577877777777766655443
No 367
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=30.62 E-value=72 Score=17.67 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=31.9
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEc
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVR 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~ 150 (154)
...+...|..+. ...+. ....+..+...+|++++...-.+ ..+. .....+-.. ..+|++++-
T Consensus 19 ~~~l~~~g~~v~---~~~~~-~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s 83 (127)
T 2jba_A 19 CFVLEQNGFQPV---EAEDY-DSAVNQLNEPWPDLILLAWMLPG-GSGI---QFIKHLRRESMTRDIPVVMLT 83 (127)
T ss_dssp HHHHHHTTCEEE---EECSH-HHHHTTCSSSCCSEEEEESEETT-EEHH---HHHHHHHTSTTTTTSCEEEEE
T ss_pred HHHHHHCCceEE---EeCCH-HHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHhCcccCCCCEEEEe
Confidence 334444465432 12333 33445556678999999865221 1111 233444433 358888874
No 368
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=30.61 E-value=1.2e+02 Score=20.35 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhh--HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKN--VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~--~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+++.|..+......+++.+ ..++.....++|-||+......... .. -..+...++||+++-.
T Consensus 19 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 19 IDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS-----DV-LKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH-----HH-HHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH-----HH-HHHHHHCCCCEEEECC
Confidence 34556666777778888766554555543 3445555678999998754321111 11 2345667899988843
No 369
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=30.61 E-value=75 Score=20.02 Aligned_cols=42 Identities=2% Similarity=-0.124 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecC
Q 031713 76 LLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
.+....+.+...|.+ ..+..+...+...++.. +.+++++..-
T Consensus 66 ~l~~~v~kI~~~g~n--VVl~~k~I~d~a~~~l~--k~gI~~vr~v 107 (178)
T 1gml_A 66 YIHQLCEDIIQLKPD--VVITEKGISDLAQHYLM--RANVTAIRRV 107 (178)
T ss_dssp HHHHHHHHHHTTCCS--EEEESSCBCHHHHHHHH--HTTCEEECCC
T ss_pred HHHHHHHHHhhcCCc--EEEECCcccHHHHHHHH--HCCCEEEecC
Confidence 334444445556765 34555678888888888 4555666543
No 370
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=30.49 E-value=20 Score=20.26 Aligned_cols=19 Identities=21% Similarity=0.450 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCCEEEEecC
Q 031713 103 VICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~ 121 (154)
.+.+..+..++.++|+...
T Consensus 25 ~v~kai~~gka~lViiA~D 43 (101)
T 3on1_A 25 QVVKAVQNGQVTLVILSSD 43 (101)
T ss_dssp HHHHHHHTTCCSEEEEETT
T ss_pred HHHHHHHcCCCcEEEEeCC
Confidence 4444455555666665544
No 371
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=30.43 E-value=1.5e+02 Score=21.31 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=53.8
Q ss_pred EEEEEecCCchHHHHHHHHHHHcccCCCCC-------e-----EEEEEe-ccCCchhhcccCCCCCchHHHHHHHHHHHH
Q 031713 5 KVMVAIDESECRHYALQWALENLGDAISKS-------D-----LIIFTA-RPTEFIYVQASMFGAAPPDLLMSIQENQKK 71 (154)
Q Consensus 5 ~iLv~vd~~~~~~~~l~~a~~la~~~~~~~-------~-----l~~l~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (154)
+|-|.+.--..++...+.+.++.+..|-.. . =.++|+ .+.+....
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se---------------------- 71 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSN---------------------- 71 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGG----------------------
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHH----------------------
Confidence 566777766667777777777777654100 0 247777 44433221
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecC
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
...-.+.+...+...+.++-.......-....++..++.+.|.|+++..
T Consensus 72 -~~ttI~~I~~~a~~~gyk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 72 -IDSAINKIVKLADDKEVQAIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp -HHHHHHHHHGGGGCTTEEEEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred -HHHHHHHHHHHhhcCCCeEEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 1223555666666656443222222222466788889889998887754
No 372
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=30.39 E-value=1.2e+02 Score=20.13 Aligned_cols=84 Identities=8% Similarity=-0.031 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
+...++.++++|...| ++..++|.-....... . + ..+...+...+.++++...+++.|+.+-.+.
T Consensus 102 ~~~~~~~~i~~a~~lG--a~~v~~~~g~~~~~~~------~--p-----~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 166 (287)
T 3kws_A 102 CMDTMKEIIAAAGELG--STGVIIVPAFNGQVPA------L--P-----HTMETRDFLCEQFNEMGTFAAQHGTSVIFEP 166 (287)
T ss_dssp HHHHHHHHHHHHHHTT--CSEEEECSCCTTCCSB------C--C-----SSHHHHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEecCcCCcCCC------C--C-----CHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 3456778899999988 7877776421110000 0 0 0123445566777888888888898865553
Q ss_pred ec---C---ChhhHHHHHHHhcCCC
Q 031713 96 EM---G---DPKNVICEAAEKHKIQ 114 (154)
Q Consensus 96 ~~---g---~~~~~i~~~a~~~~~d 114 (154)
.. + ...+.+.+++++.+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~ll~~v~~~ 191 (287)
T 3kws_A 167 LNRKECFYLRQVADAASLCRDINNP 191 (287)
T ss_dssp CCTTTCSSCCCHHHHHHHHHHHCCT
T ss_pred cCcccCcccCCHHHHHHHHHHcCCC
Confidence 32 1 3455666777765533
No 373
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=30.39 E-value=71 Score=19.76 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=30.0
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
-+.+++.+..+..+...++ +++.|+..| +++.++.-.+.
T Consensus 79 ~~d~vI~iS~sG~t~~~~~-~~~~ak~~g--~~vi~IT~~~~ 117 (186)
T 1m3s_A 79 EGDLVIIGSGSGETKSLIH-TAAKAKSLH--GIVAALTINPE 117 (186)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEESCTT
T ss_pred CCCEEEEEcCCCCcHHHHH-HHHHHHHCC--CEEEEEECCCC
Confidence 4678999999998888776 567888877 78877765443
No 374
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=30.37 E-value=1.3e+02 Score=21.60 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCeEEEEEecC---C----hhhHHHHHHHhcCCCEEE-Eec
Q 031713 76 LLGRAKEICAKHGVVAETMTEMG---D----PKNVICEAAEKHKIQLLI-VGS 120 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~v~~g---~----~~~~i~~~a~~~~~dliv-lg~ 120 (154)
..+++.+.+++.|+.+. +..| + ..+.+.+.+++.++|+|| +|-
T Consensus 60 ~~~~v~~~L~~~g~~~~--~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 60 VYDQVVDSLKKHGIEWV--EVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp HHHHHHHHHHHTTCEEE--EECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCeEE--EecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34566666666787653 3332 2 234555667889999988 553
No 375
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=30.23 E-value=83 Score=20.54 Aligned_cols=35 Identities=11% Similarity=-0.081 Sum_probs=25.6
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEE
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFT 40 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~ 40 (154)
.-++|++++.++..+-++.+..-.|.+. .+++++-
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~~----g~V~vv~ 52 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTEW----AEVRAVV 52 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHTT----SEEEEEE
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhcC----CCEEEEE
Confidence 3579999999999888888877776553 2665553
No 376
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=30.16 E-value=1.3e+02 Score=20.41 Aligned_cols=82 Identities=6% Similarity=-0.123 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCe-EEEEE
Q 031713 17 HYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVV-AETMT 95 (154)
Q Consensus 17 ~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~v 95 (154)
...++.++++|...| ++..++|.-....... .. ....+...+...+.+.++.+.+++.|+. +-.+.
T Consensus 113 ~~~~~~~i~~A~~lG--a~~v~~~~g~~~~~~~-------~~----~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~ 179 (316)
T 3qxb_A 113 YQHLKRAIDMTAAME--VPATGMPFGSYSAADA-------LN----PARREEIYAIARDMWIELAAYAKRQGLSMLYVEP 179 (316)
T ss_dssp HHHHHHHHHHHHHTT--CCEEEECCBBCCHHHH-------TC----HHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHHHHHcC--CCEEEecCCCcCcccc-------CC----cccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 356788999999988 7877665432110000 00 1112234455667777888888888988 65544
Q ss_pred --ec---CChhhHHHHHHHhc
Q 031713 96 --EM---GDPKNVICEAAEKH 111 (154)
Q Consensus 96 --~~---g~~~~~i~~~a~~~ 111 (154)
.. +...+.+.++.+..
T Consensus 180 ~~~~~~~~~t~~~~~~l~~~v 200 (316)
T 3qxb_A 180 VPLATEFPSSAADAARLMADL 200 (316)
T ss_dssp CSCTTBSSCSHHHHHHHHHHH
T ss_pred cCCccccCCCHHHHHHHHHHH
Confidence 21 23344555555544
No 377
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=30.13 E-value=47 Score=22.54 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=32.7
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
..++...++..++.|+|+... -...+= -...-.|.+..++|..+|+.
T Consensus 132 vneVTklVE~kKAqLVVIA~D-VdPiEl---V~fLPaLC~k~gVPY~iVk~ 178 (258)
T 3iz5_H 132 LNHVTYLIEQSKAQLVVIAHD-VDPIEL---VVWLPALCRKMEVPYCIVKG 178 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEESC-CSSTHH---HHHHHHHHTTTTCCEEEESC
T ss_pred cHHHHHHHHcCcceEEEEeCC-CChHHH---HhHHHHHHHhcCCCeEEECC
Confidence 567788888999999999864 333331 12335677888888888874
No 378
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=30.10 E-value=1.2e+02 Score=22.81 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+....+.+.+.++..||.-+. .|.++..+.+.-| |||+.+-+.
T Consensus 381 ia~aa~~~A~~l~a~aIv~~T~---------SG~tA~~isr~RP~~pIia~T~~ 425 (499)
T 3hqn_D 381 VCSSAVNSVYETKAKAMVVLSN---------TGRSARLVAKYRPNCPIVCVTTR 425 (499)
T ss_dssp HHHHHHHHHHHHTCSEEEEECS---------SSHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECC---------CcHHHHHHHhhCCCCCEEEEcCC
Confidence 4455556788889999998775 2567777887777 999988553
No 379
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=29.93 E-value=97 Score=21.05 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=30.9
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+.+...++..++.|+|+...- +... .-.....+.....+|+..++.
T Consensus 136 ~keV~KaIekgKAkLVVIA~Da-dP~e---ivk~LpaLC~k~gVPy~~V~s 182 (256)
T 3izc_H 136 LNHVVALIENKKAKLVLIANDV-DPIE---LVVFLPALCKKMGVPYAIVKG 182 (256)
T ss_dssp HHHHHHHHHHTCCSEEEEESCC-SSGG---GTTHHHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHhCcceEEEEeCCC-ChHH---HHHHHHHHHHhcCCCEEEECC
Confidence 5677888888999999998753 2221 112235566777788777654
No 380
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=29.89 E-value=74 Score=19.56 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=29.9
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
-+.+++.+..+..+...++ +++.|+..| +++..+.-.+.
T Consensus 82 ~~d~vi~iS~sG~t~~~~~-~~~~ak~~g--~~vi~IT~~~~ 120 (180)
T 1jeo_A 82 KDDLLILISGSGRTESVLT-VAKKAKNIN--NNIIAIVCECG 120 (180)
T ss_dssp TTCEEEEEESSSCCHHHHH-HHHHHHTTC--SCEEEEESSCC
T ss_pred CCCEEEEEeCCCCcHHHHH-HHHHHHHCC--CcEEEEeCCCC
Confidence 4578999999988888776 557888877 78877766544
No 381
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=29.74 E-value=1.4e+02 Score=20.48 Aligned_cols=68 Identities=9% Similarity=0.054 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
...++.+.+.+.+.|..+......+++. ..+++.....++|-||+...... ...-..+...++|++++
T Consensus 84 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~--------~~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 84 PEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHS--------EAARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC--------HHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCC--------HHHHHHHHhCCCCEEEE
Confidence 3556677777888888775544334443 34455566778999888643221 11234566778998887
No 382
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=29.69 E-value=1.3e+02 Score=22.84 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=32.4
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+......|.+.++..||.-+. .|.++..+.+.-| |||+.+-+.
T Consensus 397 ia~aa~~~A~~l~a~aIv~~T~---------SG~tA~~iSr~RP~~PIia~T~~ 441 (511)
T 3gg8_A 397 VARAAVETAECVNAAIILALTE---------TGQTARLIAKYRPMQPILALSAS 441 (511)
T ss_dssp HHHHHHHHHHHHTCSEEEEECS---------SSHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECC---------CchHHHHHHhhCCCCCEEEEcCC
Confidence 4455566788899999998775 2557777777766 999988553
No 383
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=29.45 E-value=1.4e+02 Score=20.41 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcCCeEEEEEe--cC-ChhhHHHHHHHhcCCCEEEEecC
Q 031713 76 LLGRAKEICAKHGVVAETMTE--MG-DPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~v~--~g-~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
..+.+.+.+++.|+++..... .+ .-....+..++..++|.|++...
T Consensus 154 ~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~ 202 (356)
T 3ipc_A 154 LADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGL 202 (356)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccC
Confidence 345555666666776433222 23 23445555566678888886543
No 384
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=29.45 E-value=87 Score=18.17 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=28.8
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~~ 152 (154)
..+..++.+++..+|+|++...-.. ...+ .....+-... .+|++++-..
T Consensus 54 ~~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 54 NGQEAIQLLEKESVDIAILDVEMPV-KTGL---EVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp SHHHHHHHHTTSCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred CHHHHHHHhhccCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEeCC
Confidence 3345556677788999999976322 2211 2334444434 4888887543
No 385
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=29.34 E-value=1.1e+02 Score=19.50 Aligned_cols=46 Identities=13% Similarity=0.031 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHh-c-CCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAK-H-GVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~-~-~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
....+.+.+.+++ . |++++..... ...........++|+.+.|...
T Consensus 112 ~~~a~~i~~~l~~~i~GI~v~i~~~~---~~~~~~~~~~g~~d~~~~~w~~ 159 (229)
T 3o6p_A 112 KKTVEFVQGSIQDALDGVKVTVSPVP---FSVRLDRSNKGDFDAVIGGWSA 159 (229)
T ss_dssp HHHHHHHHHHHHHHSTTEEEEEEEEC---HHHHHHHHHHTCCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEecC---HHHHHHHhhcCCceEEEecccC
Confidence 4556677788888 7 9888776654 3344445567899999988653
No 386
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=29.28 E-value=1.3e+02 Score=19.96 Aligned_cols=46 Identities=11% Similarity=0.136 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEE
Q 031713 103 VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLV 148 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvli 148 (154)
.+++...+.++|.|.+.............-.....+.+..++||++
T Consensus 34 ~~a~~~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~ 79 (266)
T 2w6r_A 34 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIA 79 (266)
T ss_dssp HHHHHHHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEE
T ss_pred HHHHHHHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEE
Confidence 3444455556666666432211111101112334555555666665
No 387
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.25 E-value=1.3e+02 Score=20.02 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEec-CChhh--HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEM-GDPKN--VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~-g~~~~--~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+++.|..+...... ++..+ ..++.+...++|-||+.......... . -.-+...++||+++-
T Consensus 20 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~-~~~~~~~~iPvV~~~ 93 (305)
T 3g1w_A 20 KRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD-----T-INKAVDAGIPIVLFD 93 (305)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH-----H-HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH-----H-HHHHHHCCCcEEEEC
Confidence 345566666667778777653323 35443 34555666799999986543221211 1 233456789998874
Q ss_pred C
Q 031713 151 K 151 (154)
Q Consensus 151 ~ 151 (154)
.
T Consensus 94 ~ 94 (305)
T 3g1w_A 94 S 94 (305)
T ss_dssp S
T ss_pred C
Confidence 3
No 388
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=29.15 E-value=78 Score=17.57 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=26.4
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRK 151 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~ 151 (154)
.....+......+|++++...-.. ..+. .....+-. ...+|++++-.
T Consensus 38 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~l~~~l~~~~~~~~~~ii~~s~ 87 (128)
T 1jbe_A 38 GVDALNKLQAGGYGFVISDWNMPN-MDGL---ELLKTIRAXXAMSALPVLMVTA 87 (128)
T ss_dssp HHHHHHHHTTCCCCEEEEESCCSS-SCHH---HHHHHHHC--CCTTCCEEEEES
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCcEEEEec
Confidence 344445666778999999875322 2211 23344433 13478888754
No 389
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=29.01 E-value=1.3e+02 Score=22.82 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=33.1
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+......|.+.++..||.-+. .|.++..+.+.-| |||+.+-+.
T Consensus 412 ia~aa~~~A~~l~a~aIv~~T~---------sG~tA~~iSr~RP~~pI~a~T~~ 456 (526)
T 4drs_A 412 IACSAVESAHDVNAKLIITITE---------TGNTARLISKYRPSQTIIACTAK 456 (526)
T ss_dssp HHHHHHHHHHHTTCSEEEEECS---------SSHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhCCCCEEEEECC---------CcHHHHHHHhhCCCCCEEEECCC
Confidence 4556667788999999998765 2567777877666 999988653
No 390
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=28.97 E-value=58 Score=18.67 Aligned_cols=44 Identities=9% Similarity=0.138 Sum_probs=23.9
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
.+.+....+..++.++|+......... .....+.....+|+..+
T Consensus 26 ~~~v~kai~~gka~lViiA~D~~~~~~-----~~l~~~c~~~~Vp~~~~ 69 (110)
T 3cpq_A 26 SKRTIKFVKHGEGKLVVLAGNIPKDLE-----EDVKYYAKLSNIPVYQH 69 (110)
T ss_dssp HHHHHHHHHTTCCSEEEECTTCBHHHH-----HHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHH-----HHHHHHHHHcCCCEEEE
Confidence 345556666677777777765311111 12234555556776665
No 391
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=28.89 E-value=46 Score=26.46 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecC
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
...+..++..+.+.+........-.-+.-.+.|+++|++.++|++|+|..
T Consensus 406 ~~~~~a~~~~~~~~~~~~~~~gfe~m~~st~~Iv~~A~~~gid~~vlg~e 455 (757)
T 3ln7_A 406 LGAQLAQQYKAQAFERFYALSAFDNMELSTQALLFDVIQKGIHTEILDEN 455 (757)
T ss_dssp HHHHHHHHHHHHHHTTTTSCSTTTTSCHHHHHHHHHHHHHTCEEEEEETT
T ss_pred HHHHHHHHHHHHHHccCccccccccCCCCHHHHHHHHHHhCCCEEEECCC
Confidence 33344444444444333332221112445889999999999999999964
No 392
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=28.88 E-value=89 Score=18.13 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHH--------HhcCCCEEEEecCCCCCcccccccchhHHHhh--c-CCCcE
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAA--------EKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVH--N-AKCPV 146 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a--------~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~--~-~~~pv 146 (154)
+.+...+...|....+.. ..+..+++...- ....+|+|++...-.+ ..++ .+...+-. . ..+|+
T Consensus 18 ~~l~~~L~~~g~~~~v~~-~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~~pi 92 (152)
T 3heb_A 18 RLIEKNIRRAGVNNEIIA-FTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPD-MTGI---DILKLVKENPHTRRSPV 92 (152)
T ss_dssp HHHHHHHHHTTCCCCEEE-ESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSS-SBHH---HHHHHHHHSTTTTTSCE
T ss_pred HHHHHHHHhCCCcceEEE-eCCHHHHHHHHhccccccccccCCCCEEEEeCCCCC-CcHH---HHHHHHHhcccccCCCE
Confidence 344445555565333322 344444444442 4678999999875322 2211 23344443 2 34888
Q ss_pred EEEcCC
Q 031713 147 LVVRKP 152 (154)
Q Consensus 147 liv~~~ 152 (154)
+++-..
T Consensus 93 i~~t~~ 98 (152)
T 3heb_A 93 VILTTT 98 (152)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 887543
No 393
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=28.86 E-value=1.2e+02 Score=22.67 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=31.9
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+....+.+.+.++..||.-+. .|.++..+.+.-| |||+.+-+.
T Consensus 358 ia~aa~~~a~~l~a~aIv~~T~---------sG~ta~~isr~RP~~pI~a~t~~ 402 (470)
T 1e0t_A 358 VCRGAVETAEKLDAPLIVVATQ---------GGKSARAVRKYFPDATILALTTN 402 (470)
T ss_dssp HHHHHHHHHHHTTCSBEEEECS---------SSHHHHHHHTTCCSSBEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECC---------ChhHHHHHHhhCCCCCEEEECCC
Confidence 4555566778889998887665 2567777777776 999988553
No 394
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=28.82 E-value=1.3e+02 Score=20.05 Aligned_cols=69 Identities=4% Similarity=0.077 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHHhcCCCEEEEecCCCCCcccccccc-hhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGS-VSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs-~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+++.|..+......++. ...+++.....++|-||+....... . ....+. . ++||+++-
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~~l~-~-~iPvV~i~ 101 (303)
T 3kke_A 31 ADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD-------DDMLAAVL-E-GVPAVTIN 101 (303)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC-------HHHHHHHH-T-TSCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc-------HHHHHHHh-C-CCCEEEEC
Confidence 355666777777788877655444443 3456677778899999987543221 1 234444 4 89998884
Q ss_pred C
Q 031713 151 K 151 (154)
Q Consensus 151 ~ 151 (154)
.
T Consensus 102 ~ 102 (303)
T 3kke_A 102 S 102 (303)
T ss_dssp C
T ss_pred C
Confidence 3
No 395
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A*
Probab=28.80 E-value=12 Score=25.49 Aligned_cols=46 Identities=13% Similarity=-0.034 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHh-cCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAK-HGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~-~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
++.++++.+.+.+ .+ .+......|+.++.-. -...++|++|+....
T Consensus 23 q~eL~~ive~L~~~~~-~i~~I~LFGS~ARG~~--~~~SDIDilVv~~~~ 69 (272)
T 4ebj_A 23 QHTIARWVDRLREEYA-DAVAILLKGSYARGDA--ATWSDIDFDVLVSTQ 69 (272)
T ss_dssp HHHHHHHHHHHHHHCT-TEEEEEEEHHHHHTCC--CTTCCEEEEEEESST
T ss_pred HHHHHHHHHHHHHhcC-CceEEEEEeceeCCCC--CCCCceEEEEEecCC
Confidence 3334444444433 23 5666777887655433 345699999997654
No 396
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=28.76 E-value=1.6e+02 Score=21.03 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=25.2
Q ss_pred cCCeEEEEEecC-C--hhhHHHHHHHhcCCCEEEEecC
Q 031713 87 HGVVAETMTEMG-D--PKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 87 ~~~~~~~~v~~g-~--~~~~i~~~a~~~~~dlivlg~~ 121 (154)
.++++..++..+ + ....+.+.+.+.++|.|++..+
T Consensus 219 ~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~nt 256 (367)
T 3zwt_A 219 HRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNT 256 (367)
T ss_dssp GCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 467787887766 3 2445777788999999998644
No 397
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=28.69 E-value=1.5e+02 Score=20.71 Aligned_cols=83 Identities=6% Similarity=-0.008 Sum_probs=50.1
Q ss_pred EEEEecC-----CchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 031713 6 VMVAIDE-----SECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRA 80 (154)
Q Consensus 6 iLv~vd~-----~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (154)
|||-.+. ++.+..++..|.+++. .+. .+++++-+=+.. +.+
T Consensus 3 ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~-~~V~av~~G~~~--------------------------------~~~ 48 (320)
T 1o97_D 3 ILVIAEHRRNDLRPVSLELIGAANGLKK-SGE-DKVVVAVIGSQA--------------------------------DAF 48 (320)
T ss_dssp EEEECCEETTEECTHHHHHHHHHHHHCS-STT-CEEEEEEESTTG--------------------------------GGG
T ss_pred EEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCC-CcEEEEEECCcH--------------------------------HHH
Confidence 5554442 4678999999999987 431 278877664331 111
Q ss_pred HHHHHhcCCeEEEEEec---C----ChhhHHHHHHHhcCCCEEEEecCC
Q 031713 81 KEICAKHGVVAETMTEM---G----DPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~---g----~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+..+|..--..+.. + ..++.|.+.+++.++|+|++|+..
T Consensus 49 ~~~a~a~GaDkv~~v~d~~l~~~~~~~a~~La~~i~~~~pdlVL~g~ts 97 (320)
T 1o97_D 49 VPALSVNGVDELVVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSV 97 (320)
T ss_dssp HHHHCBTTCSEEEEEECSCSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred HHHHHhcCCceEEEEeCcccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11133456653333322 1 135667778888899999999853
No 398
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=28.66 E-value=1.4e+02 Score=20.29 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
....++.++++|+..| ++..+++-.+.. . . +...+...+.+.++.+.++++|+.+-.+.
T Consensus 112 ~~~~~~~~i~~A~~lG--~~~v~~~~~~~~--~---------~--------~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn 170 (305)
T 3obe_A 112 FDEFWKKATDIHAELG--VSCMVQPSLPRI--E---------N--------EDDAKVVSEIFNRAGEITKKAGILWGYHN 170 (305)
T ss_dssp HHHHHHHHHHHHHHHT--CSEEEECCCCCC--S---------S--------HHHHHHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEeCCCCCC--C---------C--------HHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 3456777888888877 665554321110 0 0 12234455667777777778888755443
No 399
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=28.62 E-value=68 Score=23.12 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=33.6
Q ss_pred EEEEecC-ChhhHHHHH-HHhcCCCEEEEecCCCCCcccccccchhHHHhhcC--CCcEEEEc
Q 031713 92 ETMTEMG-DPKNVICEA-AEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA--KCPVLVVR 150 (154)
Q Consensus 92 ~~~v~~g-~~~~~i~~~-a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~--~~pvliv~ 150 (154)
.-.+..| +..-...++ ..-.++||||.|-. +-. .+.+.|.+...+.+.+ .+||+++-
T Consensus 256 ~a~l~~G~~~v~~~~~l~~~l~~ADLVITGEG-~~D-~QT~~GK~p~gVa~~A~~~~Pviaia 316 (371)
T 1to6_A 256 QASIVSGIDTCLDLIDFDKKVSDVDLVIVGEG-RLD-RQSLAGKAPIGVAKRTPVGVPVVAIC 316 (371)
T ss_dssp CCEEEEHHHHHHHHTTHHHHTTTCSEEEECCS-EEC-STTTTTCHHHHHHTTSCTTCCEEEEE
T ss_pred CCEeccHHHHHHHhhCHHHHhcCCCEEEECCC-CCC-CCCCCCcHHHHHHHHHhcCCCEEEEe
Confidence 3345555 443333333 22358999999953 322 2345677766666555 68999884
No 400
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=28.60 E-value=1e+02 Score=18.78 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=34.5
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcCC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRKP 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~~ 152 (154)
+...+...|..+ ....+.. ..++..++..+|+|++...-. ...++ .....+-... .+||+++-..
T Consensus 23 l~~~L~~~g~~v---~~~~~~~-~al~~~~~~~~dlvl~D~~lp-~~~g~---~~~~~l~~~~~~~~ii~lt~~ 88 (184)
T 3rqi_A 23 LARGLERRGYAV---RQAHNKD-EALKLAGAEKFEFITVXLHLG-NDSGL---SLIAPLCDLQPDARILVLTGY 88 (184)
T ss_dssp HHHHHHHTTCEE---EEECSHH-HHHHHHTTSCCSEEEECSEET-TEESH---HHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHHHCCCEE---EEeCCHH-HHHHHHhhCCCCEEEEeccCC-CccHH---HHHHHHHhcCCCCCEEEEeCC
Confidence 344444456543 2233444 444566778899999986521 11111 2334444433 4898887543
No 401
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=28.59 E-value=61 Score=18.94 Aligned_cols=19 Identities=16% Similarity=0.137 Sum_probs=9.7
Q ss_pred cEEEEEecCCchHHHHHHHH
Q 031713 4 KKVMVAIDESECRHYALQWA 23 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a 23 (154)
+++++ +.....+...++..
T Consensus 5 ~~vlI-iGaG~~g~~l~~~l 23 (141)
T 3nkl_A 5 KKVLI-YGAGSAGLQLANML 23 (141)
T ss_dssp EEEEE-ECCSHHHHHHHHHH
T ss_pred CEEEE-ECCCHHHHHHHHHH
Confidence 44443 44455666555543
No 402
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=28.55 E-value=79 Score=17.40 Aligned_cols=64 Identities=16% Similarity=0.147 Sum_probs=34.6
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+...+...|..+. ...+. ....+..+...+|++++...-.+ ..+. .....+-...++|++++-.
T Consensus 19 l~~~l~~~~~~v~---~~~~~-~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~ 82 (123)
T 1xhf_A 19 LKSIFEAEGYDVF---EATDG-AEMHQILSEYDINLVIMDINLPG-KNGL---LLARELREQANVALMFLTG 82 (123)
T ss_dssp HHHHHHTTTCEEE---EESSH-HHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCEEEEEES
T ss_pred HHHHHhhCCcEEE---EeCCH-HHHHHHHhcCCCCEEEEcCCCCC-CCHH---HHHHHHHhCCCCcEEEEEC
Confidence 3444444565432 22333 44445566778999999875322 2221 2344444445688888754
No 403
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=28.47 E-value=1.3e+02 Score=19.72 Aligned_cols=71 Identities=8% Similarity=0.042 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCeEEEEEe-cCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 77 LGRAKEICAKHGVVAETMTE-MGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~-~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
++.+.+.++...++.+...+ ..++...+.+.|++.++...++....... +.-+.......++.....++++
T Consensus 16 l~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~~~~~--r~~~d~~~~~~l~~~~~Dliv~ 87 (211)
T 3p9x_A 16 AEAIIQSQKAGQLPCEVALLITDKPGAKVVERVKVHEIPVCALDPKTYPS--KEAYEIEVVQQLKEKQIDFVVL 87 (211)
T ss_dssp HHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHHTTTCCEEECCGGGSSS--HHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHHHcCCCEEEeChhhcCc--hhhhHHHHHHHHHhcCCCEEEE
Confidence 44555555544454444333 34566678899999999988886543211 1011122334566667777765
No 404
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=28.38 E-value=28 Score=25.57 Aligned_cols=46 Identities=7% Similarity=-0.079 Sum_probs=26.7
Q ss_pred CChhhHHHHHHH-hcCCCEEEEecCCCCCcccccccchhHHHhhcCC
Q 031713 98 GDPKNVICEAAE-KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK 143 (154)
Q Consensus 98 g~~~~~i~~~a~-~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~ 143 (154)
|+-.+.+++.++ +.++.+|.+...+.......-.......++++.+
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~~ 159 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAARCP 159 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTTTCCTTHHHHHHHHHHHTTCC
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCccccHHHHHHHHHHHHHHHhh
Confidence 766666666654 6789988888776432111122334455666543
No 405
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=28.36 E-value=1.1e+02 Score=19.18 Aligned_cols=47 Identities=15% Similarity=0.061 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEE-ecCC------hhhHHHHHHHhcCCCEEEEec
Q 031713 74 LALLGRAKEICAKHGVVAETMT-EMGD------PKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v-~~g~------~~~~i~~~a~~~~~dlivlg~ 120 (154)
.+...++.+.++..|.++.+.. +.++ ....-.+.|++.++|++|==+
T Consensus 32 l~ia~~l~~~L~~~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH 85 (180)
T 3qay_A 32 KSLAPVLADTFRKEGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELH 85 (180)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEee
Confidence 3445566667777787764433 3332 245566778899999988643
No 406
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=28.35 E-value=1.5e+02 Score=20.52 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEecC-----Chh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCc
Q 031713 73 ALALLGRAKEICAKHGVVAETMTEMG-----DPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCP 145 (154)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~v~~g-----~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~p 145 (154)
..+.+.++.+.+.++|+.+-.....| ++. ....+.+.+.++|.|-.+..+ ..-.++...+++|
T Consensus 156 ~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~t~----------e~~~~vv~~~~vP 225 (295)
T 3glc_A 156 SIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVE----------KGFERIVAGCPVP 225 (295)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEECCT----------TTHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCCCH----------HHHHHHHHhCCCc
Confidence 44456677888888887743322222 221 235567889999998887431 1236688888999
Q ss_pred EEEE
Q 031713 146 VLVV 149 (154)
Q Consensus 146 vliv 149 (154)
|++.
T Consensus 226 Vv~~ 229 (295)
T 3glc_A 226 IVIA 229 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9875
No 407
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=28.29 E-value=1.5e+02 Score=20.43 Aligned_cols=68 Identities=7% Similarity=0.123 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
...++.+.+.+.+.|..+......++.. ..+++.....++|-||+...... ...-..+...++|++++
T Consensus 86 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 86 AQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT--------EQTIRLLQRASIPIVEI 155 (355)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC--------HHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC--------HHHHHHHHhCCCCEEEE
Confidence 3456677777778888775544434443 34556666779999888643221 11234566778999887
No 408
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=28.26 E-value=1.2e+02 Score=19.86 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCC
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRG 124 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~ 124 (154)
.+..+.+++.|..+-..+-.+.+.+.+..+.. .+|+|.+++...+
T Consensus 102 ~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~--~~D~v~~msv~pg 146 (230)
T 1tqj_A 102 HRTLCQIRELGKKAGAVLNPSTPLDFLEYVLP--VCDLILIMSVNPG 146 (230)
T ss_dssp HHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG--GCSEEEEESSCC-
T ss_pred HHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHh--cCCEEEEEEeccc
Confidence 34455556678776665544566677666666 7888888775443
No 409
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=28.05 E-value=1.4e+02 Score=20.11 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEec
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~ 120 (154)
...+..+.+.+++.|+.+..-+ +|...-++.|.+.++|.|=+-+
T Consensus 113 ~~~l~~~i~~L~~~GIrVSLFI---Dpd~~qi~aA~~~GA~~IELhT 156 (243)
T 1m5w_A 113 RDKMRDACKRLADAGIQVSLFI---DADEEQIKAAAEVGAPFIEIHT 156 (243)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE---CSCHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHhCcCEEEEec
Confidence 4667788888899999887655 5667778899999999998755
No 410
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=28.04 E-value=93 Score=18.05 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
++..+.+.+.+.+.|++++..-....... .-.++|.||+|+..
T Consensus 13 ~~iA~~ia~~l~~~g~~v~~~~~~~~~~~------~l~~~d~iiig~pt 55 (138)
T 5nul_A 13 EKMAELIAKGIIESGKDVNTINVSDVNID------ELLNEDILILGCSA 55 (138)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEGGGCCHH------HHTTCSEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCeEEEEEhhhCCHH------HHhhCCEEEEEcCc
Confidence 44555666666667877665443332111 22489999999864
No 411
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=28.04 E-value=1.5e+02 Score=20.36 Aligned_cols=45 Identities=7% Similarity=0.089 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCCeEEE--EEecC-ChhhHHHHHHHhcCCCEEEEec
Q 031713 76 LLGRAKEICAKHGVVAET--MTEMG-DPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~--~v~~g-~~~~~i~~~a~~~~~dlivlg~ 120 (154)
..+.+.+.+++.|+++.. ....+ .-....+..++..++|.|++..
T Consensus 157 ~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~ 204 (364)
T 3lop_A 157 AITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGA 204 (364)
T ss_dssp HHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEec
Confidence 345566666667776432 22223 2344555556667888888854
No 412
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=27.95 E-value=1e+02 Score=19.23 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=30.4
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTE 45 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~ 45 (154)
-+.+++.+..|..+...++ +++.|+..| +++..+.-.+..
T Consensus 116 ~~d~vI~iS~SG~t~~~~~-~~~~ak~~g--~~vI~IT~~~~s 155 (198)
T 2xbl_A 116 EGDVLIGYSTSGKSPNILA-AFREAKAKG--MTCVGFTGNRGG 155 (198)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHTT--CEEEEEECSCCC
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CeEEEEECCCCC
Confidence 4678999999998888775 567888877 788777665443
No 413
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=27.86 E-value=1.6e+02 Score=20.67 Aligned_cols=41 Identities=15% Similarity=0.066 Sum_probs=26.3
Q ss_pred HHHHhcCCeEEEEEec---CChhhHHHHHHHhcCCCEEEEecCC
Q 031713 82 EICAKHGVVAETMTEM---GDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~---g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
+.+.+.|+++...-.. +....++++..++.++|++|+...+
T Consensus 66 ~~A~~~gIpv~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 109 (329)
T 2bw0_A 66 LEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAELNVLPFCS 109 (329)
T ss_dssp HHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCSEEEESSCS
T ss_pred HHHHHcCCCEEecCcccccccccHHHHHHHHhcCCCEEEEeehh
Confidence 3445568875442111 1223678888889999999998664
No 414
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=27.85 E-value=79 Score=17.21 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=33.8
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...+...|..+. ...+..+. .+..+...+|++++...-.. ..+. .....+-...++|++++-.
T Consensus 18 ~~~l~~~~~~v~---~~~~~~~a-~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~ 80 (120)
T 2a9o_A 18 KFNMTKEGYEVV---TAFNGREA-LEQFEAEQPDIIILDLMLPE-IDGL---EVAKTIRKTSSVPILMLSA 80 (120)
T ss_dssp HHHHHHTTCEEE---EESSHHHH-HHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCCEEEEES
T ss_pred HHHHHhcCcEEE---EecCHHHH-HHHHHhCCCCEEEEeccCCC-CCHH---HHHHHHHhCCCCCEEEEec
Confidence 333444465432 23344444 44556678999999875322 2221 2344444455689888754
No 415
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=27.72 E-value=1.3e+02 Score=19.53 Aligned_cols=70 Identities=21% Similarity=0.163 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEEe--cCChhh--HHHHHHHhcC-CCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEE
Q 031713 75 ALLGRAKEICAKHGVVAETMTE--MGDPKN--VICEAAEKHK-IQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~--~g~~~~--~i~~~a~~~~-~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv 149 (154)
..++.+.+.+++.|..+..... .+++.+ ..++.....+ +|-||+......... ..-..+...++|++++
T Consensus 17 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~------~~~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 17 QVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLT------PSVAQYRARNIPVLVV 90 (276)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTH------HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHH------HHHHHHHHCCCcEEEE
Confidence 4455566666667877655442 234433 3444444556 999998754222111 1123456678999888
Q ss_pred c
Q 031713 150 R 150 (154)
Q Consensus 150 ~ 150 (154)
-
T Consensus 91 ~ 91 (276)
T 3ksm_A 91 D 91 (276)
T ss_dssp S
T ss_pred e
Confidence 4
No 416
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=27.60 E-value=1.3e+02 Score=19.65 Aligned_cols=45 Identities=11% Similarity=0.005 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCC
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
+..+.+.+.+++.|++++..... ...........++|+.+.|...
T Consensus 142 ~~a~~iq~~l~~iGI~v~i~~~~---~~~~~~~~~~~~~d~~~~~w~~ 186 (259)
T 3pam_A 142 KVALAFQSNLSRLGIHAEIRTVD---DSQYQNRLGMFNYDMIIGKLKN 186 (259)
T ss_dssp HHHHHHHHHHHTTTCEEEEEECC---HHHHHHHHHHTCCSEEEEEECC
T ss_pred HHHHHHHHHHHHcCCEEEEEecC---HHHHHHHHhcCCeeEEEeccCC
Confidence 34556667777789888776643 2334444567899999998753
No 417
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=27.59 E-value=88 Score=17.66 Aligned_cols=46 Identities=9% Similarity=-0.026 Sum_probs=26.6
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcC
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRK 151 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~ 151 (154)
....+..++..+|+|++...-.. ...+ .....+-...+ +|++++-.
T Consensus 41 ~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 41 EEGERLFGLHAPDVIITDIRMPK-LGGL---EMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCCCEEEECCC
T ss_pred HHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCcEEEEec
Confidence 34455566678999999976322 2211 23344544444 78887754
No 418
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=27.59 E-value=1.3e+02 Score=19.73 Aligned_cols=70 Identities=14% Similarity=0.213 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhh--HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKN--VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~--~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
..++.+.+.+++.|..+......+++.+ ..++.....++|-||+......... .... .+....+||+++-
T Consensus 18 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~ 89 (283)
T 2ioy_A 18 TLKNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV-----TAIK-EANSKNIPVITID 89 (283)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEES
T ss_pred HHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH-----HHHH-HHHHCCCeEEEec
Confidence 3455555666666877655433345443 3345555778999888643221111 1122 3456678988874
No 419
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=27.56 E-value=1.4e+02 Score=19.85 Aligned_cols=23 Identities=13% Similarity=-0.005 Sum_probs=18.2
Q ss_pred hhhHHHHHHHhcCCCEEEEecCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
..+.|.+..++.++|+|+.....
T Consensus 85 ~~~~l~~~ir~~~PdvV~t~~~~ 107 (242)
T 2ixd_A 85 YIREIVKVIRTYKPKLVFAPYYE 107 (242)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSC
T ss_pred HHHHHHHHHHHcCCCEEEECCCC
Confidence 45677788999999999976544
No 420
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.56 E-value=91 Score=17.78 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=21.7
Q ss_pred cCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 111 HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 111 ~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
..+|++++...-.. ...+ .....+-.. ..+|++++-.
T Consensus 61 ~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~t~ 100 (149)
T 1k66_A 61 PRPAVILLDLNLPG-TDGR---EVLQEIKQDEVLKKIPVVIMTT 100 (149)
T ss_dssp CCCSEEEECSCCSS-SCHH---HHHHHHTTSTTGGGSCEEEEES
T ss_pred CCCcEEEEECCCCC-CCHH---HHHHHHHhCcccCCCeEEEEeC
Confidence 68999999875322 2211 233444444 3488888754
No 421
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=27.49 E-value=16 Score=20.38 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=24.2
Q ss_pred HHHHHHHHHh-cCCeEEEEEecCChhhHHHHHHHh-cCCCEEEEecC
Q 031713 77 LGRAKEICAK-HGVVAETMTEMGDPKNVICEAAEK-HKIQLLIVGSH 121 (154)
Q Consensus 77 l~~~~~~~~~-~~~~~~~~v~~g~~~~~i~~~a~~-~~~dlivlg~~ 121 (154)
++++.+.+++ .+. ......|+.+..= +-.. .++|++|+...
T Consensus 4 l~~i~~~l~~~~~~--~~v~LFGS~ArG~--~~~~~SDiDllV~~~~ 46 (96)
T 1ylq_A 4 MKEIKEITKKDVQD--AEIYLYGSVVEGD--YSIGLSDIDVAIVSDV 46 (96)
T ss_dssp HHHHHHHHHHHCTT--CEEEEESHHHHCC--SSSCCCSEEEEEECGG
T ss_pred HHHHHHHHHHHcCC--cEEEEEEEEEeCC--CCCCCCceEEEEEeCC
Confidence 4455555554 343 4455678766542 2234 68999998764
No 422
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=27.46 E-value=2e+02 Score=21.70 Aligned_cols=30 Identities=10% Similarity=0.017 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
..++..+++|+++|+..+ ..+|+++|=..-
T Consensus 165 ~~ieRIar~AFe~A~~r~-rkkVT~V~KaNV 194 (496)
T 2d1c_A 165 KGSEKIVRFAFELARAEG-RKKVHCATKSNI 194 (496)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCEEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHhcC-CCcEEEEECCCc
Confidence 568889999999999862 157888875443
No 423
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=27.40 E-value=1.4e+02 Score=20.07 Aligned_cols=35 Identities=6% Similarity=0.107 Sum_probs=25.6
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCC
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTE 45 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~ 45 (154)
.+|+|++. ...|..++..+.++ + .++.++|+....
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~----~--~~i~vv~iDtg~ 89 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKL----N--RNVKVFSLDTGR 89 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHH----C--TTCCEEEECCSC
T ss_pred CCEEEEee-cHHHHHHHHHHHHh----C--CCceEEEEeCCC
Confidence 57999999 88888788777654 3 367788886553
No 424
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=27.40 E-value=1.6e+02 Score=20.47 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=23.0
Q ss_pred CCeEEEEEecC-C--hhhHHHHHHHhcCCCEEEEecC
Q 031713 88 GVVAETMTEMG-D--PKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 88 ~~~~~~~v~~g-~--~~~~i~~~a~~~~~dlivlg~~ 121 (154)
++++-.++..+ + ....+.+.+.+.++|.|++..+
T Consensus 211 ~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 211 YVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp CCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 56666665444 1 2355677888899999998754
No 425
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=27.25 E-value=1.2e+02 Score=19.42 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHHhcCCe---EEEEEecCCh---hhHHHHHHHhcCCCEEEEe
Q 031713 81 KEICAKHGVV---AETMTEMGDP---KNVICEAAEKHKIQLLIVG 119 (154)
Q Consensus 81 ~~~~~~~~~~---~~~~v~~g~~---~~~i~~~a~~~~~dlivlg 119 (154)
...+++.|.. ....+...+. .++|.+.+.+.++|+||..
T Consensus 29 ~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitT 73 (195)
T 1di6_A 29 EEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTT 73 (195)
T ss_dssp HHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3444455654 2333333332 2334344443479999875
No 426
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.23 E-value=88 Score=17.54 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHh-------cCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEE
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEK-------HKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVL 147 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~-------~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvl 147 (154)
+.+...+...|....+.. ..+..+ ..+..++ ..+|++++...-.. ...+ .....+-.. ..+|++
T Consensus 16 ~~l~~~L~~~~~~~~v~~-~~~~~~-a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~---~~~~~l~~~~~~~~~pii 89 (140)
T 1k68_A 16 RLIQEALANSTVPHEVVT-VRDGME-AMAYLRQEGEYANASRPDLILLXLNLPK-KDGR---EVLAEIKSDPTLKRIPVV 89 (140)
T ss_dssp HHHHHHHHTCSSCCEEEE-ECSHHH-HHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHH---HHHHHHHHSTTGGGSCEE
T ss_pred HHHHHHHHhcCCCceEEE-ECCHHH-HHHHHHcccccccCCCCcEEEEecCCCc-ccHH---HHHHHHHcCcccccccEE
Confidence 344555555565323222 234444 4444554 68999999875322 2211 234444444 348888
Q ss_pred EEcC
Q 031713 148 VVRK 151 (154)
Q Consensus 148 iv~~ 151 (154)
++-.
T Consensus 90 ~ls~ 93 (140)
T 1k68_A 90 VLST 93 (140)
T ss_dssp EEES
T ss_pred EEec
Confidence 8754
No 427
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=27.22 E-value=1.2e+02 Score=18.87 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=33.9
Q ss_pred HHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 81 KEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...+...|..+.. ...+..++ ++.++...+|++++...-.+ ..++ .....+-...+.|++++-
T Consensus 30 ~~~L~~~g~~v~~--~~~~~~~a-l~~~~~~~~dlvi~D~~~p~-~~g~---~~~~~l~~~~~~pii~lt 92 (205)
T 1s8n_A 30 AEMLREEGYEIVG--EAGDGQEA-VELAELHKPDLVIMDVKMPR-RDGI---DAASEIASKRIAPIVVLT 92 (205)
T ss_dssp HHHHHHTTCEEEE--EESSHHHH-HHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHTTCSCEEEEE
T ss_pred HHHHHHCCCEEEE--EeCCHHHH-HHHHhhcCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEe
Confidence 3334445654321 23344333 45556678999999875322 2221 244555555567888873
No 428
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=27.12 E-value=1e+02 Score=20.94 Aligned_cols=24 Identities=13% Similarity=0.131 Sum_probs=21.2
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCC
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
-+.+.+++.+++.++|+|.+..--
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~ 190 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTV 190 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeec
Confidence 489999999999999999998753
No 429
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.10 E-value=88 Score=17.50 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=27.2
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
.....+..++..+|+|++...-.. ..+. .....+-+. ..+||+++-.
T Consensus 36 ~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 36 GASGLQQALAHPPDVLISDVNMDG-MDGY---ALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HHHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHSTTTTTCCEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCccCCCCEEEEeC
Confidence 344455667788999999875322 2211 233444443 2588888754
No 430
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=27.00 E-value=65 Score=21.12 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=29.6
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEec
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTAR 42 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~ 42 (154)
-+.+++.+..|..+...++ +++.|+..| +++..+.-.
T Consensus 108 ~~Dv~I~iS~SG~t~~~i~-~~~~Ak~~G--~~vI~IT~~ 144 (243)
T 3cvj_A 108 NKDVIMIISNSGRNTVPVE-MAIESRNIG--AKVIAMTSM 144 (243)
T ss_dssp TTCEEEEECSSCCSHHHHH-HHHHHHHHT--CEEEEEECH
T ss_pred CCCEEEEEeCCCCCHHHHH-HHHHHHHCC--CEEEEEeCC
Confidence 3578999999999998886 557888877 788777655
No 431
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.97 E-value=92 Score=17.69 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=34.6
Q ss_pred HHHHHHh-cCCeEEEEEecCChhhHHHHHHHh-cCCCEEEEecCCCCCcccccccchhHHHhh---cCCCcEEEEcCC
Q 031713 80 AKEICAK-HGVVAETMTEMGDPKNVICEAAEK-HKIQLLIVGSHSRGPIQRAFLGSVSNYCVH---NAKCPVLVVRKP 152 (154)
Q Consensus 80 ~~~~~~~-~~~~~~~~v~~g~~~~~i~~~a~~-~~~dlivlg~~~~~~~~~~~~gs~~~~l~~---~~~~pvliv~~~ 152 (154)
+...+.. .|..+. ...+. +..++..++ ..+|+|++...-.+...++ .+...+-. ...+||+++-..
T Consensus 20 l~~~L~~~~~~~v~---~~~~~-~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 20 TKIIFDNIGEYDFI---EVENL-KKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp HHHHHHHHCCCEEE---EECSH-HHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEESC
T ss_pred HHHHHHhccCccEE---EECCH-HHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeCC
Confidence 3444444 465443 23333 344455666 8999999987532112211 23344443 345898887543
No 432
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=26.91 E-value=1.1e+02 Score=22.77 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=34.7
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCCC----CCccc---ccccchhHHHhhcCCCcE
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHSR----GPIQR---AFLGSVSNYCVHNAKCPV 146 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~~----~~~~~---~~~gs~~~~l~~~~~~pv 146 (154)
...+++++.|++.+.-+|+-.+.+. ++..+ ..+......+..++.+|+
T Consensus 32 e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv 86 (450)
T 3txv_A 32 LVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPR 86 (450)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCc
Confidence 5789999999999998888877542 22222 235566777888888885
No 433
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=26.86 E-value=50 Score=23.93 Aligned_cols=52 Identities=4% Similarity=-0.088 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 99 DPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 99 ~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...+.+.+.+++.++|-+|.-....=.....-...+...+.+...+|++.+-
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie 372 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFD 372 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3566677788899999888766532222222222233355577788988774
No 434
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=26.81 E-value=1.2e+02 Score=18.87 Aligned_cols=78 Identities=17% Similarity=0.172 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHhcCC--eEEEEEecCC--hhhHHHHHHHhcCCCEEE-EecCCCCCccc--ccccchhHHHhh---
Q 031713 71 KAALALLGRAKEICAKHGV--VAETMTEMGD--PKNVICEAAEKHKIQLLI-VGSHSRGPIQR--AFLGSVSNYCVH--- 140 (154)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~~--~~~~~v~~g~--~~~~i~~~a~~~~~dliv-lg~~~~~~~~~--~~~gs~~~~l~~--- 140 (154)
.-.+.+++.+.+.+.+.|+ +++..-+.|. ..-.+...++..++|-+| +|.-=++...+ +.-..++.-|++
T Consensus 26 ~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~v~L 105 (156)
T 1c2y_A 26 FVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGL 105 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888886 3555556674 334445667777888766 46643333333 333334443332
Q ss_pred cCCCcEEE
Q 031713 141 NAKCPVLV 148 (154)
Q Consensus 141 ~~~~pvli 148 (154)
+...||..
T Consensus 106 ~~~vPV~~ 113 (156)
T 1c2y_A 106 NSGVPCVF 113 (156)
T ss_dssp HHTSCEEE
T ss_pred hcCCCEEE
Confidence 34577653
No 435
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=26.78 E-value=1.6e+02 Score=20.39 Aligned_cols=76 Identities=9% Similarity=0.099 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecC--ChhhHH--HHHHHhcCC-CEEEEecCCCCCcccccccchhHHHhhcCCCcE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMG--DPKNVI--CEAAEKHKI-QLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPV 146 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g--~~~~~i--~~~a~~~~~-dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pv 146 (154)
+..+.++.+.+.... .++ ..+-.| +..+.| .+.+++.++ |-+.+..........--+=..-..|...++.||
T Consensus 61 Er~~v~~~~~~~~~g-rvp--ViaGvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a~~lPi 137 (311)
T 3h5d_A 61 EELELFAAVQKVVNG-RVP--LIAGVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADASDLPI 137 (311)
T ss_dssp HHHHHHHHHHHHSCS-SSC--EEEECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHSCSSCE
T ss_pred HHHHHHHHHHHHhCC-CCc--EEEeCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 334444444443321 334 344444 454444 356777776 988777654333222111123467888889999
Q ss_pred EEEc
Q 031713 147 LVVR 150 (154)
Q Consensus 147 liv~ 150 (154)
++..
T Consensus 138 ilYn 141 (311)
T 3h5d_A 138 IIYN 141 (311)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9874
No 436
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=26.70 E-value=65 Score=18.06 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=11.8
Q ss_pred hHHHHHHHhcCCCEEEEecC
Q 031713 102 NVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~ 121 (154)
+.+....+..++.++|+...
T Consensus 22 ~~v~kai~~gka~lViiA~D 41 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARN 41 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETT
T ss_pred HHHHHHHHcCCCcEEEEeCC
Confidence 44455555666666666654
No 437
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=26.58 E-value=87 Score=17.27 Aligned_cols=64 Identities=11% Similarity=0.155 Sum_probs=33.5
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc-CCCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN-AKCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~-~~~pvliv~~ 151 (154)
+...+...|..+. ...+.. ..+...+...+|++++...-.+ ..+. .....+-.. ..+|++++-.
T Consensus 19 l~~~l~~~~~~v~---~~~~~~-~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 19 LNEVFNKEGYQTF---QAANGL-QALDIVTKERPDLVLLDMKIPG-MDGI---EILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp HHHHHHTTTCEEE---EESSHH-HHHHHHHHHCCSEEEEESCCTT-CCHH---HHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHHCCcEEE---EeCCHH-HHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCCEEEEEc
Confidence 3344444565432 233333 3445556678999999875322 2221 233444443 3488888743
No 438
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=26.58 E-value=1.7e+02 Score=21.15 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEE---EEecCCCCCcccccccchhHHHhhcCCCcEEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLL---IVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLV 148 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dli---vlg~~~~~~~~~~~~gs~~~~l~~~~~~pvli 148 (154)
+.-+.+.++.....+.|+++-+.+..-...+.+ +|+| -+|++.... ..-..+...+.+||.+
T Consensus 136 ~GL~i~r~ll~~v~e~GlPvaTEvld~~~~qyv--------~Dllsw~aIGARt~es-------q~hre~Asgl~~PVg~ 200 (370)
T 1of8_A 136 KGLQSARQLFVNLTNIGLPIGSEMLDTISPQYL--------ADLVSFGAIGARTTES-------QLHRELASGLSFPVGF 200 (370)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCSSSTHHHH--------GGGCSEEEECTTTTTC-------HHHHHHHHTCSSCEEE
T ss_pred HHHHHHHHHHHHHHHcCCceEEeecCcccHHHH--------HHHHhhccccCccccc-------HHHHHHHhcCCCeEEE
Confidence 344455555555567899998888776443332 6777 688775321 1224455678899886
Q ss_pred Ec
Q 031713 149 VR 150 (154)
Q Consensus 149 v~ 150 (154)
=+
T Consensus 201 Kn 202 (370)
T 1of8_A 201 KN 202 (370)
T ss_dssp EC
T ss_pred cC
Confidence 43
No 439
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C
Probab=26.36 E-value=95 Score=20.53 Aligned_cols=65 Identities=17% Similarity=0.027 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccc----hhHHHhhcCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGS----VSNYCVHNAK 143 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs----~~~~l~~~~~ 143 (154)
+.+.+.+.+.+.+.. .+ +-+.+|..++.....+...+ +|+.+.|... ..+-|+|+ .++..+....
T Consensus 138 e~fTd~vI~~l~~~~-~v-VFiLWG~~Aq~k~~~I~~~~--~vl~s~HPSP-a~rgFfg~~~Fs~~N~~L~~~g 206 (218)
T 2owr_A 138 DKISKLLLQHITKHV-SV-LYCLGKTDFSNIRAKLESPV--TTIVGYHPAA-RDRQFEKDRSFEIINVLLELDN 206 (218)
T ss_dssp HHHHHHHHHHHTTTC-SE-EEEECHHHHHHHHHHCSCCC--EEEEECCTTC-----CCCCCCCHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhcC-CE-EEEEeCHHHHHHHhccCCCC--cEEEecCCCc-CCCCCCCCChHHHHHHHHHHcC
Confidence 344455555555555 44 44668999999888876444 7777766433 33346665 4555555443
No 440
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=26.33 E-value=45 Score=22.31 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=29.2
Q ss_pred ecCChhhHHHHHHHhcCCCEEEEecCCC------------------CCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 96 EMGDPKNVICEAAEKHKIQLLIVGSHSR------------------GPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 96 ~~g~~~~~i~~~a~~~~~dlivlg~~~~------------------~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
..|.-. ..++.+.+.++|++|-|--+. ...++++....++.|-.+.++++.+++.
T Consensus 171 ~~GsG~-~~~~~a~~~gaD~~iTGd~~~h~~~~a~e~gi~~i~~GH~~tE~~~~~~l~~~L~~~~~~~v~~~~~ 243 (247)
T 1nmo_A 171 CTGGGQ-SFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDI 243 (247)
T ss_dssp CSSSCG-GGHHHHHHHCCSEEEESCCCHHHHHHHHHTTCEEEECCHHHHTSHHHHHHHHHHHHHSSCEEEECCC
T ss_pred ECCCcH-HHHHHHHHcCCCEEEEcCccHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 335433 344666666788877775321 1113333444555555556677776643
No 441
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=26.33 E-value=1.6e+02 Score=20.33 Aligned_cols=76 Identities=5% Similarity=-0.065 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC--CcEE
Q 031713 72 AALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK--CPVL 147 (154)
Q Consensus 72 ~~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~--~pvl 147 (154)
+..+.++.+.+.. ..+++-.-+...+..++| .+.+++.++|-+.+-... .....--+=..-..|...++ .||+
T Consensus 62 Er~~v~~~~v~~~--grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~-~~~s~~~l~~~f~~va~a~~~~lPii 138 (313)
T 3dz1_A 62 EAEAVATRFIKRA--KSMQVIVGVSAPGFAAMRRLARLSMDAGAAGVMIAPPP-SLRTDEQITTYFRQATEAIGDDVPWV 138 (313)
T ss_dssp HHHHHHHHHHHHC--TTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCT-TCCSHHHHHHHHHHHHHHHCTTSCEE
T ss_pred HHHHHHHHHHHHc--CCCcEEEecCCCCHHHHHHHHHHHHHcCCCEEEECCCC-CCCCHHHHHHHHHHHHHhCCCCCcEE
Confidence 3345555555544 234443333222444444 456888999999886543 22222111123356777778 9999
Q ss_pred EEc
Q 031713 148 VVR 150 (154)
Q Consensus 148 iv~ 150 (154)
+..
T Consensus 139 lYn 141 (313)
T 3dz1_A 139 LQD 141 (313)
T ss_dssp EEE
T ss_pred EEe
Confidence 874
No 442
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=26.30 E-value=88 Score=17.19 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=33.5
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
+...+...|..+. ...+..+ .....+...+|++++...-.. ..+. .....+-.. ..+|++++-.
T Consensus 17 l~~~L~~~~~~v~---~~~~~~~-a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 17 FHDLLEAQGYETL---QTREGLS-ALSIARENKPDLILMDIQLPE-ISGL---EVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHHHHHHTTCEEE---EESCHHH-HHHHHHHHCCSEEEEESBCSS-SBHH---HHHHHHHHSTTTTTSCEEEEC-
T ss_pred HHHHHHHcCcEEE---EeCCHHH-HHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHcCccccCCcEEEEEC
Confidence 3344444565432 2234443 445556678999999975321 2211 233444432 3588888743
No 443
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=26.28 E-value=96 Score=17.65 Aligned_cols=66 Identities=9% Similarity=0.034 Sum_probs=34.3
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHH-hcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAE-KHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~-~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
+...+...|..+. ...+..+++..... ...+|+|++...-.. ...+ .....+-...+ +||+++-..
T Consensus 19 l~~~l~~~g~~v~---~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 19 IKFLLEIDGNEVL---TASSSTEGLRIFTENCNSIDVVITDMKMPK-LSGM---DILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp HHHHHHHTTCEEE---EESSHHHHHHHHHHTTTTCCEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEEECT
T ss_pred HHHHHHhCCceEE---EeCCHHHHHHHHHhCCCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCeEEEEECC
Confidence 3444445564332 23344444443333 578999999976322 2211 23344444444 888887543
No 444
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=26.17 E-value=1.1e+02 Score=18.32 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=7.6
Q ss_pred HHHHHHhcCCCEEEEec
Q 031713 104 ICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 104 i~~~a~~~~~dlivlg~ 120 (154)
+....+..++.++|+..
T Consensus 40 v~kai~~gkakLViiA~ 56 (134)
T 2ale_A 40 ATKTLNRGISEFIIMAA 56 (134)
T ss_dssp HHHHHHHTCEEEEEEET
T ss_pred HHHHHHhCCCeEEEEeC
Confidence 33444444444444443
No 445
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=26.08 E-value=80 Score=20.00 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=31.5
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCCc
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTEF 46 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~ 46 (154)
-+.+++.+..|..+...++ +++.|+..| +++.++.-.+...
T Consensus 89 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~g--~~vI~IT~~~~s~ 129 (200)
T 1vim_A 89 DQDVLVGISGSGETTSVVN-ISKKAKDIG--SKLVAVTGKRDSS 129 (200)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHHT--CEEEEEESCTTSH
T ss_pred CCCEEEEEeCCCCcHHHHH-HHHHHHHCC--CeEEEEECCCCCh
Confidence 4578999999999988886 557888877 7888887655443
No 446
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=26.05 E-value=1.5e+02 Score=19.77 Aligned_cols=38 Identities=3% Similarity=0.017 Sum_probs=27.0
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
++++++|++++.-.|..++..+.+. .| .++..+|+...
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~---~g--~~v~av~~~~~ 62 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRA---LK--ENVFALLMPTQ 62 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHH---HT--TSEEEEECCSC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHH---cC--CcEEEEEecCC
Confidence 4689999999988887666555432 24 57888887543
No 447
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=25.84 E-value=1.7e+02 Score=20.23 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=35.5
Q ss_pred EEEEEecC--ChhhHH--HHHHHhcCCCEEEEecCCCCC--cc-cccccchhHHHhhcCCCcEEEEc
Q 031713 91 AETMTEMG--DPKNVI--CEAAEKHKIQLLIVGSHSRGP--IQ-RAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 91 ~~~~v~~g--~~~~~i--~~~a~~~~~dlivlg~~~~~~--~~-~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+.+.+-.| +..++| .+.+++.++|-+.+-...... .. +-+. ..-..|...++.||++..
T Consensus 84 ~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~-~~f~~ia~a~~lPiilYn 149 (307)
T 3s5o_A 84 RLLLAGSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALI-HHYTKVADLSPIPVVLYS 149 (307)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHH-HHHHHHHHHCSSCEEEEE
T ss_pred CcEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHH-HHHHHHHhhcCCCEEEEe
Confidence 33344444 444444 467888999999987654321 12 2222 233567788899999874
No 448
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=25.79 E-value=1.2e+02 Score=18.78 Aligned_cols=77 Identities=18% Similarity=0.115 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhcC-C---eEEEEEecCC--hhhHHHHHHHhcCCCEEE-EecC--CCCCcccccccchhHHHhh-
Q 031713 71 KAALALLGRAKEICAKHG-V---VAETMTEMGD--PKNVICEAAEKHKIQLLI-VGSH--SRGPIQRAFLGSVSNYCVH- 140 (154)
Q Consensus 71 ~~~~~~l~~~~~~~~~~~-~---~~~~~v~~g~--~~~~i~~~a~~~~~dliv-lg~~--~~~~~~~~~~gs~~~~l~~- 140 (154)
.-.+.+++.+.+.+.+.| + +++..-+.|. ..-.+...++..++|-+| +|.- |.+.--++.-..++.-|++
T Consensus 25 ~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~Gl~~v 104 (156)
T 3nq4_A 25 FINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASV 104 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHH
Confidence 345677888888888888 6 4676666784 445555667888898776 4653 3333233334444443333
Q ss_pred --cCCCcEE
Q 031713 141 --NAKCPVL 147 (154)
Q Consensus 141 --~~~~pvl 147 (154)
+..+||.
T Consensus 105 ~L~~~vPV~ 113 (156)
T 3nq4_A 105 AQDSGVPVA 113 (156)
T ss_dssp HHHHCCCEE
T ss_pred HhccCCCEE
Confidence 3356764
No 449
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=25.76 E-value=1.1e+02 Score=21.74 Aligned_cols=130 Identities=16% Similarity=0.042 Sum_probs=66.6
Q ss_pred cEEEEEecC-C-chHHHHHHHHHHHcccCC--CCCeEEEEEeccCCchhhcccCCCCC--chHHHHHHHHHHHHHHHHHH
Q 031713 4 KKVMVAIDE-S-ECRHYALQWALENLGDAI--SKSDLIIFTARPTEFIYVQASMFGAA--PPDLLMSIQENQKKAALALL 77 (154)
Q Consensus 4 ~~iLv~vd~-~-~~~~~~l~~a~~la~~~~--~~~~l~~l~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 77 (154)
+++||-+.+ | +..+.++++|.+++.... .+.-+.++.+....+-.. ++|-+. .+.....+. ..+.-+.+
T Consensus 49 ~rllVIaGPCSied~eq~leyA~~Lk~~~~~~~d~l~~vmR~y~~KPRTs--~g~kGL~nDP~ld~s~~---i~~GL~~~ 123 (346)
T 3tqk_A 49 DRVAVVVGPCSIHDPAAAIEYATKLKEQVKKFHKDILIIMRVYFEKPRTT--IGWKGFINDPDLDNSYN---INKGLRLA 123 (346)
T ss_dssp CSEEEEEECSSCSCHHHHHHHHHHHHHHHHHHTTTEEEEEECCCCCCCSS--CSCCCTTTCTTSSSCCC---HHHHHHHH
T ss_pred CCEEEEEecCccCCHHHHHHHHHHHHHHHhhhcccceEEeeecccCCCCC--cCccccccCCCCCCCcc---HHHHHHHH
Confidence 356666654 3 455668888888876420 002355666544332111 122211 010000000 01222222
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
.++.....+.|+++-+.+..-...+-+.+ -+|++-+|++..... .-..+.....+||++=+
T Consensus 124 R~ll~~~~e~GLpiatE~ld~~~~qyv~d-----lvs~~aIGARt~enq-------~hre~asg~s~PVg~Kn 184 (346)
T 3tqk_A 124 RNLLSDLTNMGLPCATEFLDVITPQYFAE-----LITWGAIGARTVESQ-------VHRELASGLSASIGFKN 184 (346)
T ss_dssp HHHHHHHHHTTCCEEEECCSSSGGGGTGG-----GCSEEEECGGGTTCH-------HHHHHHTTCSSEEEEEC
T ss_pred HHHHHHHHhcCCCEEEEecCcCCHHHHHH-----HhheeeeCcccccCH-------HHHHHhcCCCCceEEeC
Confidence 33222356679999898877654444333 377999999854322 22556678889998643
No 450
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=25.72 E-value=1.3e+02 Score=19.52 Aligned_cols=47 Identities=9% Similarity=0.044 Sum_probs=27.8
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCc-ccccccchhHHHhhcCCCcEEEE
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPI-QRAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~-~~~~~gs~~~~l~~~~~~pvliv 149 (154)
.+.++.+.+.+++.|++-...+... ... --....++....++||+..
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~ipvia~ 199 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGGP-NLDLLAGVADRTDAPVIAS 199 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSCC-CHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCC-CHHHHHHHHHhCCCCEEEE
Confidence 4555666777899777655433222 222 1234566777778898764
No 451
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=25.70 E-value=1.5e+02 Score=19.64 Aligned_cols=69 Identities=7% Similarity=-0.021 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhh--HHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKN--VICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~--~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...+.+.+.+++.|..+...-. +++.+ ..++.....++|-||+......... .. -+.+....+||+++-
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~-~~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 19 TEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGS-----AI-VAKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHH-----HH-HHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhH-----HH-HHHHHHCCCcEEEeC
Confidence 4445555666666766543322 34433 3445555678999998764322111 11 234566789998885
No 452
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=25.67 E-value=1.1e+02 Score=19.37 Aligned_cols=40 Identities=5% Similarity=0.040 Sum_probs=21.9
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHh---cCCCEEEEecC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEK---HKIQLLIVGSH 121 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~---~~~dlivlg~~ 121 (154)
+.+...|+.-...+..|+..+.+.....+ ..+|+|++...
T Consensus 112 ~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~ 154 (229)
T 2avd_A 112 PLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD 154 (229)
T ss_dssp HHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred HHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC
Confidence 33344454323445567766655444432 57888888643
No 453
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=25.58 E-value=1.6e+02 Score=20.03 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEe
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVG 119 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg 119 (154)
..+..+.+.+++.|+.+..-+ +|...-++.|.+.++|.|=+-
T Consensus 111 ~~L~~~i~~L~~~GIrVSLFI---Dpd~~qi~aA~~~GAd~IELh 152 (260)
T 3o6c_A 111 AKLKQSIEKLQNANIEVSLFI---NPSLEDIEKSKILKAQFIELH 152 (260)
T ss_dssp TTHHHHHHHHHHTTCEEEEEE---CSCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEEe---CCCHHHHHHHHHhCCCEEEEe
Confidence 456777788888999887655 566777899999999999883
No 454
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=25.57 E-value=1.1e+02 Score=20.08 Aligned_cols=35 Identities=6% Similarity=0.217 Sum_probs=18.4
Q ss_pred cCCeEEEEEecCChhhHHHHHHH---hcCCCEEEEecC
Q 031713 87 HGVVAETMTEMGDPKNVICEAAE---KHKIQLLIVGSH 121 (154)
Q Consensus 87 ~~~~~~~~v~~g~~~~~i~~~a~---~~~~dlivlg~~ 121 (154)
.|+.-.+.+..|+..+.+..... ...+|+|++...
T Consensus 108 ~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 108 AKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD 145 (242)
T ss_dssp TTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC
T ss_pred cCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC
Confidence 34432344455666555544433 256777777643
No 455
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=25.39 E-value=1e+02 Score=17.53 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=26.2
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
....++..++..+|+|++...-.+ ..+ -.....+-.. ..+|++++-.
T Consensus 35 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~ 84 (140)
T 3n53_A 35 EKEALEQIDHHHPDLVILDMDIIG-ENS---PNLCLKLKRSKGLKNVPLILLFS 84 (140)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CcH---HHHHHHHHcCcccCCCCEEEEec
Confidence 334445556678999999975321 111 1244555544 3588888754
No 456
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=25.36 E-value=1e+02 Score=17.56 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 79 RAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
.+...+...|..+. ...+..+ .++......+|++++...-. ...++ .....+-....+|++++-.
T Consensus 19 ~l~~~L~~~g~~v~---~~~~~~~-al~~~~~~~~dlvllD~~l~-~~~g~---~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 19 KLKGFLEEKGISID---LAYNCEE-AIGKIFSNKYDLIFLEIILS-DGDGW---TLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp HHHHHHHTTTCEEE---EESSHHH-HHHHHHHCCCSEEEEESEET-TEEHH---HHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHHCCCEEE---EECCHHH-HHHHHHhcCCCEEEEeCCCC-CCCHH---HHHHHHccCCCCCEEEEEc
Confidence 33444444465432 2334444 44566677899999986522 12211 2334444434688888743
No 457
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=25.31 E-value=2e+02 Score=20.95 Aligned_cols=30 Identities=13% Similarity=-0.134 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 13 SECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 13 ~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
...++..+++|+++|+..+ .+|+++|=..-
T Consensus 183 ~~~~eRiar~AFe~A~~r~--~kVt~v~KaNV 212 (402)
T 2uxq_A 183 VASIGHFARACFEYSLDQK--IDCWFATKDTI 212 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHT--CCEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHHcC--CcEEEEECCCc
Confidence 3567889999999999865 67888875443
No 458
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=25.29 E-value=1.4e+02 Score=22.81 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=31.7
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+....+.+...++..||.-+.. |.++..+.+.-| |||+.+-+.
T Consensus 431 ia~aa~~~A~~l~a~aIv~~T~S---------G~TA~~iSr~RP~~PIia~T~~ 475 (550)
T 3gr4_A 431 TAVGAVEASFKCCSGAIIVLTKS---------GRSAHQVARYRPRAPIIAVTRN 475 (550)
T ss_dssp HHHHHHHHHHHTTCSCEEEECSS---------SHHHHHHHTTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcCC
Confidence 34445566788899988887652 567777777776 999988553
No 459
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=25.22 E-value=72 Score=21.60 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=23.0
Q ss_pred EEEEEecCChhhHHHHHHHhcCCCEEEEec
Q 031713 91 AETMTEMGDPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 91 ~~~~v~~g~~~~~i~~~a~~~~~dlivlg~ 120 (154)
++..+..=++..++++.|.+.++|+||.=+
T Consensus 38 V~~I~~alD~t~~vi~eAi~~gadlIitHH 67 (267)
T 2fyw_A 38 IQRVMVALDIREETVAEAIEKGVDLIIVKH 67 (267)
T ss_dssp CSEEEEESCCCHHHHHHHHHTTCSEEEESS
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEECC
Confidence 444443448899999999999999998754
No 460
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=25.05 E-value=1.1e+02 Score=18.10 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=27.8
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++..++..+|+|++...-.+ ..+ -.+...+-...++|++++-.
T Consensus 61 ~~al~~l~~~~~dlvilD~~l~~-~~g---~~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 61 LEAVEKAIELKPDVITMDIEMPN-LNG---IEALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSS-SCH---HHHHHHHHHHSCCEEEEEES
T ss_pred HHHHHHhccCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCceEEEEec
Confidence 34445556678999999975322 221 12445565666788888743
No 461
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=24.98 E-value=1.8e+02 Score=20.25 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=30.9
Q ss_pred HhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcc-cccccchhHHHhhcCCCcEEEE
Q 031713 85 AKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQ-RAFLGSVSNYCVHNAKCPVLVV 149 (154)
Q Consensus 85 ~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~-~~~~gs~~~~l~~~~~~pvliv 149 (154)
++.++.+-..+ .++. ....+.+.++|.|++.....+... ....-.....+....++||++.
T Consensus 107 ~~~g~~v~~~v--~~~~--~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaa 168 (332)
T 2z6i_A 107 HEAGIIVIPVV--PSVA--LAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAA 168 (332)
T ss_dssp HHTTCEEEEEE--SSHH--HHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEE
T ss_pred HHcCCeEEEEe--CCHH--HHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEE
Confidence 33465554433 2222 345566778999999322111110 0111134455666678998875
No 462
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=24.92 E-value=92 Score=21.71 Aligned_cols=41 Identities=15% Similarity=0.047 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCeEEEEEecCCh-hhHHHHHHHhcCCCEEEEecCC
Q 031713 79 RAKEICAKHGVVAETMTEMGDP-KNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~~-~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+.+.++|+++.. ..+. ..++.+..++.++|++|+-..+
T Consensus 49 ~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~~~ 90 (314)
T 3tqq_A 49 PVKEIARQNEIPIIQ---PFSLRDEVEQEKLIAMNADVMVVVAYG 90 (314)
T ss_dssp HHHHHHHHTTCCEEC---CSCSSSHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHcCCCEEC---cccCCCHHHHHHHHhcCCCEEEEcCcc
Confidence 456666778988532 2222 3478888999999999998764
No 463
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=24.84 E-value=1.1e+02 Score=17.96 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=58.9
Q ss_pred CCCcEEEEEecC-CchHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 031713 1 MDKKKVMVAIDE-SECRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGR 79 (154)
Q Consensus 1 m~~~~iLv~vd~-~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (154)
|.++.|++-+.- ++.-...++..+.=++..| ++=.++.|+....++ ++++.
T Consensus 1 l~~k~i~~lv~v~~E~l~n~fRk~fkD~R~~G--skKvviNvis~~~y~--------------------------e~v~~ 52 (126)
T 2rbg_A 1 MPYKNILTLISVNNDNFENYFRKIFLDVRSSG--SKKTTINVFTEIQYQ--------------------------ELVTL 52 (126)
T ss_dssp --CCSEEEEEECCGGGHHHHHHHHHHHHHHHT--CSEEEEEEECSSCHH--------------------------HHHHH
T ss_pred CCCCceEEEEecchhhHHHHHHHHHHHHHhcC--CceEEEEEecCCcHH--------------------------HHHHH
Confidence 356778888876 4556677888888888887 777888888776553 12222
Q ss_pred HHHHH-HhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEec
Q 031713 80 AKEIC-AKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 80 ~~~~~-~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~ 120 (154)
+++.+ ..-++-.+..+...+..+..++-..+.++|=+++=-
T Consensus 53 ~REAiLDNIDlG~el~~WKp~eVdkm~~k~~q~~~dGl~iYC 94 (126)
T 2rbg_A 53 IREALLENIDIGYELFLWKKNEVDIFLKNLEKSEVDGLLVYC 94 (126)
T ss_dssp THHHHHHTTTSEEEEEEECGGGHHHHHHHHTTCCCCEEEEEE
T ss_pred HHHHHHhccccceEEEEeCHHHHHHHHHHHHHhCCCceEEEe
Confidence 22222 223555666666666667777777777888776643
No 464
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=24.79 E-value=1.8e+02 Score=20.37 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCeEEEEEec---CC-hhhHHHHHHHhcCCCEEEEecC
Q 031713 77 LGRAKEICAKHGVVAETMTEM---GD-PKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~---g~-~~~~i~~~a~~~~~dlivlg~~ 121 (154)
++.+.+.+.+.|+.+...... ++ -...++..++..++|.||+...
T Consensus 146 ~~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~ 194 (389)
T 3o21_A 146 LQAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCE 194 (389)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESC
T ss_pred HHHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECC
Confidence 344445555667776554432 22 2455666677777888887653
No 465
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=24.72 E-value=1.5e+02 Score=19.47 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=35.4
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHH---HHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEA---AEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~---a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
+.+.+.+.+...+..+..+...+++... ..+.++|.|| .+ |.++..|-++.+.||+-++-
T Consensus 28 ~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~~~~~~dVII-SR-----------Ggta~~Lr~~~~iPVV~I~v 90 (225)
T 2pju_A 28 FRDISLEFDHLANITPIQLGFEKAVTYIRKKLANERCDAII-AA-----------GSNGAYLKSRLSVPVILIKP 90 (225)
T ss_dssp HHHHHTTTTTTCEEEEECCCHHHHHHHHHHHTTTSCCSEEE-EE-----------HHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHhhCCCceEEEecCcHHHHHHHHHHHHhcCCCeEEE-eC-----------ChHHHHHHhhCCCCEEEecC
Confidence 3344444455566667667666555543 2223578444 32 45666676777899998864
No 466
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=24.71 E-value=1.4e+02 Score=18.88 Aligned_cols=44 Identities=5% Similarity=0.127 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHh--cCCCEEEEecC
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEK--HKIQLLIVGSH 121 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~--~~~dlivlg~~ 121 (154)
+.+.+.+...|+.-...+..|+..+.+...... ..+|+|++...
T Consensus 97 ~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~ 142 (223)
T 3duw_A 97 DIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD 142 (223)
T ss_dssp HHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC
T ss_pred HHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC
Confidence 344444455565433556678877665555443 46999998754
No 467
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=24.60 E-value=1.5e+02 Score=19.32 Aligned_cols=66 Identities=8% Similarity=0.103 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEec-CChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEcC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEM-GDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~-g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
...++.+.+.+++.|..+...... ......+++.....++|-||++... . .. .+.. .++||+++-.
T Consensus 21 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~-~--~~--------~~~~-~~iPvV~~~~ 87 (280)
T 3gyb_A 21 IDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGIIIAQDI-P--DF--------TVPD-SLPPFVIAGT 87 (280)
T ss_dssp HHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEEEESCC--------------------CCCEEEESC
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEEecCCC-C--hh--------hHhh-cCCCEEEECC
Confidence 455666777777888776554433 1234557777777899999944322 1 11 1111 6789888743
No 468
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=24.55 E-value=1.5e+02 Score=20.45 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEecCC
Q 031713 73 ALALLGRAKEICAKHGVVAETMTEMGD 99 (154)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~v~~g~ 99 (154)
....++++.+.+.+.++. ..+..||
T Consensus 25 ~~~~~~~~~~~~~~~~~D--~vl~~GD 49 (333)
T 1ii7_A 25 FAEAFKNALEIAVQENVD--FILIAGD 49 (333)
T ss_dssp HHHHHHHHHHHHHHTTCS--EEEEESC
T ss_pred HHHHHHHHHHHHHhcCCC--EEEECCC
Confidence 345556666666655544 4555565
No 469
>4fey_A Phosphoglycerate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: ADP; 2.30A {Francisella tularensis subsp} PDB: 4ehj_A
Probab=24.54 E-value=94 Score=22.63 Aligned_cols=47 Identities=11% Similarity=0.039 Sum_probs=33.3
Q ss_pred HHHHHhcCCCEEEEecCCCC-C---cccccccchhHHHhhcCCCcEEEEcC
Q 031713 105 CEAAEKHKIQLLIVGSHSRG-P---IQRAFLGSVSNYCVHNAKCPVLVVRK 151 (154)
Q Consensus 105 ~~~a~~~~~dlivlg~~~~~-~---~~~~~~gs~~~~l~~~~~~pvliv~~ 151 (154)
++++-+.++.+|++.+-||. . ...+.+..++.+|-+....||..+++
T Consensus 47 I~~ll~~gakVil~SHlGRP~kg~~~~~~SL~pva~~L~~lLg~~V~f~~d 97 (395)
T 4fey_A 47 IQYILDQGGAVILMSHLGRPTEGEYDSQFSLEPVAKALSEIINKPVKFAKD 97 (395)
T ss_dssp HHHHHHHTCEEEEECCCSCCCTTSCCGGGCSHHHHHHHHHHHCSCEEEESS
T ss_pred HHHHHHCCCEEEEEecCCCCCCCCcCcccCHHHHHHHHHHHHCCCcEECcc
Confidence 35666668887777776554 1 23356778888888888899988865
No 470
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=24.53 E-value=1.6e+02 Score=19.59 Aligned_cols=46 Identities=4% Similarity=-0.085 Sum_probs=25.5
Q ss_pred HHHHHHHHHH-HhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEec
Q 031713 75 ALLGRAKEIC-AKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 75 ~~l~~~~~~~-~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~ 120 (154)
...+.+.+.+ ++.|+++++....+...+.+........+|+++++.
T Consensus 19 ~~~~~F~~~~~~~~gi~V~v~~~~~~s~~l~~~~~~g~~~Dv~~~~~ 65 (310)
T 1sbp_A 19 QYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLAL 65 (310)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESS
T ss_pred HHHHHHHHHhhhCCCceEEEEeecCChHHHHHHHhcCCCCCEEEeCc
Confidence 3444444433 235888777654454444333344335799998874
No 471
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=24.43 E-value=1.7e+02 Score=19.85 Aligned_cols=25 Identities=8% Similarity=0.105 Sum_probs=19.4
Q ss_pred CChhhHHHHHHHhcCCCEEEEecCC
Q 031713 98 GDPKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 98 g~~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
......+.+..++.++|++|+...+
T Consensus 63 ~~~~~~~~~~L~~~~pDliv~~~y~ 87 (260)
T 1zgh_A 63 TNKDELTFEKVKLINPEYILFPHWS 87 (260)
T ss_dssp CSGGGCCHHHHHHHCCSEEEESSCC
T ss_pred eCCCHHHHHHHHhcCCCEEEEeccc
Confidence 3445667788888999999998764
No 472
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=24.40 E-value=1.6e+02 Score=21.05 Aligned_cols=46 Identities=7% Similarity=-0.058 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCC
Q 031713 78 GRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 78 ~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~ 123 (154)
+.+....+..++++-.+..-+.......+.+.+.++|.|+++.++.
T Consensus 177 ~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~aGad~I~V~g~GG 222 (368)
T 3vkj_A 177 EKLRDISKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQGG 222 (368)
T ss_dssp HHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHTTCCEEECCCBTS
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCC
Confidence 3444444444677655543323455677788889999999987654
No 473
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=24.34 E-value=88 Score=21.87 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCeEEEEEecCC-hhhHHHHHHHhcCCCEEEEecCC
Q 031713 79 RAKEICAKHGVVAETMTEMGD-PKNVICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 79 ~~~~~~~~~~~~~~~~v~~g~-~~~~i~~~a~~~~~dlivlg~~~ 122 (154)
.+.+.+.+.|+++.. ..+ ...++.+..++.++|++|+...+
T Consensus 54 ~v~~~A~~~gIpv~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 54 PVKTLALEHNVPVYQ---PENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHHTTCCEEC---CSCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHHcCCCEEc---cCcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 345666778988632 222 23578888999999999998764
No 474
>2ha9_A UPF0210 protein SP0239; structural genomics, PSI-2, protei structure initiative, midwest center for structural genomic unknown function; 2.70A {Streptococcus pneumoniae} SCOP: c.7.1.5
Probab=24.32 E-value=2.2e+02 Score=21.13 Aligned_cols=80 Identities=13% Similarity=0.118 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE-EEecCC---------------hhhHHHHHHHhcCCCEE----EE
Q 031713 59 PDLLMSIQENQKKAALALLGRAKEICAKHGVVAET-MTEMGD---------------PKNVICEAAEKHKIQLL----IV 118 (154)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~~g~---------------~~~~i~~~a~~~~~dli----vl 118 (154)
....+.+.+.....++++.+...+..+++|+++.. ++...+ .++.+-+.+++.++|.| .+
T Consensus 39 ~~~~~~i~~ki~~~a~~lv~~~~~i~~e~Gi~IvnkRIsvtPi~~~~~~~~~~~~~~~a~~Ld~~a~~~gvdfigg~sal 118 (446)
T 2ha9_A 39 NRAAEKIYQKITTKAANLVAVGDEIAAELGIPIVNKRVSVTPISLIGAATDATDYVVLAKALDKAAKEIGVDFIGGFSAL 118 (446)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHHHHTCCEEEEEEEESCHHHHHHTSCCSCCHHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCHHHhccccChhhHHHHHHHHHHHHHHcCCCeecchhhh
Confidence 34455666667777888888888888999998544 332221 25556667888899985 34
Q ss_pred ecCCCCCcccccccchhHHH
Q 031713 119 GSHSRGPIQRAFLGSVSNYC 138 (154)
Q Consensus 119 g~~~~~~~~~~~~gs~~~~l 138 (154)
-.+|.......++.++.+.+
T Consensus 119 v~kG~~~~d~~li~sip~aL 138 (446)
T 2ha9_A 119 VQKGYQKGDEILINSIPRAL 138 (446)
T ss_dssp CTTCCCTTHHHHHHHHHHHH
T ss_pred hhcCCCcccHHHHHHHHHHH
Confidence 44444433334444544433
No 475
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=24.29 E-value=2.2e+02 Score=21.18 Aligned_cols=37 Identities=5% Similarity=-0.128 Sum_probs=19.7
Q ss_pred CCcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEE
Q 031713 2 DKKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFT 40 (154)
Q Consensus 2 ~~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~ 40 (154)
++++|-+..+.+++....++...+.++..| ..+....
T Consensus 185 gw~~V~ii~~d~~~g~~~~~~~~~~~~~~g--i~v~~~~ 221 (555)
T 2e4u_A 185 NWTYVSTVASEGDYGETGIEAFEQEARLRN--ICIATAE 221 (555)
T ss_dssp TCCEEEEEEESSTTHHHHHHHHHHHHHTTT--CEEEEEE
T ss_pred CCeEEEEEEeeChHHHHHHHHHHHHHHHCC--ccEEEEE
Confidence 345555555555666655555555555544 4544433
No 476
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=24.21 E-value=1e+02 Score=17.36 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=30.2
Q ss_pred HHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcC-CCcEEEEcC
Q 031713 80 AKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNA-KCPVLVVRK 151 (154)
Q Consensus 80 ~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~-~~pvliv~~ 151 (154)
+...+...|..+. ...+..+ .+...+...+|++++ .+.+++ .....+-... .+||+++-.
T Consensus 34 l~~~L~~~g~~v~---~~~~~~~-al~~l~~~~~dlvi~--~~~~g~------~~~~~l~~~~~~~~ii~ls~ 94 (137)
T 2pln_A 34 IEKGLNVKGFMAD---VTESLED-GEYLMDIRNYDLVMV--SDKNAL------SFVSRIKEKHSSIVVLVSSD 94 (137)
T ss_dssp HHHHHHHTTCEEE---EESCHHH-HHHHHHHSCCSEEEE--CSTTHH------HHHHHHHHHSTTSEEEEEES
T ss_pred HHHHHHHcCcEEE---EeCCHHH-HHHHHHcCCCCEEEE--cCccHH------HHHHHHHhcCCCccEEEEeC
Confidence 3344444565432 2334444 445566778999992 111111 2334443334 688888754
No 477
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=24.21 E-value=1.5e+02 Score=19.18 Aligned_cols=80 Identities=14% Similarity=-0.008 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 031713 16 RHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETMT 95 (154)
Q Consensus 16 ~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 95 (154)
+...++.++++|+..| ++...+|.-..... .. .+...+...+.++++.+.+++.|+.+-.+.
T Consensus 83 ~~~~~~~~i~~a~~lG--~~~v~~~~g~~~~~---------~~-------~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~ 144 (260)
T 1k77_A 83 AHADIDLALEYALALN--CEQVHVMAGVVPAG---------ED-------AERYRAVFIDNIRYAADRFAPHGKRILVEA 144 (260)
T ss_dssp HHHHHHHHHHHHHHTT--CSEEECCCCBCCTT---------SC-------HHHHHHHHHHHHHHHHHHHGGGTCEEEECC
T ss_pred HHHHHHHHHHHHHHcC--CCEEEECcCCCCCC---------CC-------HHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 4567888999999988 77666553111000 00 123445566777788888888898865544
Q ss_pred ec-----C---ChhhHHHHHHHhcCC
Q 031713 96 EM-----G---DPKNVICEAAEKHKI 113 (154)
Q Consensus 96 ~~-----g---~~~~~i~~~a~~~~~ 113 (154)
.. + ...+.+.+++++.+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 170 (260)
T 1k77_A 145 LSPGVKPHYLFSSQYQALAIVEEVAR 170 (260)
T ss_dssp CCTTTSTTBSCCSHHHHHHHHHHHCC
T ss_pred CCccCCCcCccCCHHHHHHHHHHhCC
Confidence 31 1 234566666666543
No 478
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=24.11 E-value=1e+02 Score=19.67 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=30.3
Q ss_pred CcEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEEeccCC
Q 031713 3 KKKVMVAIDESECRHYALQWALENLGDAISKSDLIIFTARPTE 45 (154)
Q Consensus 3 ~~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~ 45 (154)
-+.+++.+..+.++...++ +++.|+..| +++..+.-.+..
T Consensus 131 ~~DvvI~iS~SG~t~~~i~-~~~~ak~~G--~~vIaIT~~~~s 170 (212)
T 2i2w_A 131 EGDVLLGISTSGNSANVIK-AIAAAREKG--MKVITLTGKDGG 170 (212)
T ss_dssp TTCEEEEECSSSCCHHHHH-HHHHHHHHT--CEEEEEEETTCG
T ss_pred CCCEEEEEECCCCCHHHHH-HHHHHHHCC--CeEEEEECCCCC
Confidence 3578999999998888876 557888877 788777665443
No 479
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=24.08 E-value=1.2e+02 Score=19.12 Aligned_cols=11 Identities=9% Similarity=-0.124 Sum_probs=5.4
Q ss_pred eEEEEEeccCC
Q 031713 35 DLIIFTARPTE 45 (154)
Q Consensus 35 ~l~~l~v~~~~ 45 (154)
.+.+.++++.+
T Consensus 48 ~v~V~~~f~lp 58 (187)
T 2o95_A 48 VLDVSNSFAVP 58 (187)
T ss_dssp EEEEEEEEEEC
T ss_pred EEEEEEEEEeC
Confidence 45555555443
No 480
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=23.93 E-value=66 Score=20.24 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=13.0
Q ss_pred HHHHHHHhcCCCEEEEecCC
Q 031713 103 VICEAAEKHKIQLLIVGSHS 122 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~~ 122 (154)
.+..... .+|.||+|+.-
T Consensus 47 ~~~~~l~--~~D~ii~gsP~ 64 (193)
T 3d7n_A 47 DGWAALD--AADAIIFGTPT 64 (193)
T ss_dssp HHHHHHH--HCSEEEEEEEE
T ss_pred hHHHHHH--HCCEEEEEeCc
Confidence 3445555 79999999864
No 481
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=23.91 E-value=1.2e+02 Score=19.18 Aligned_cols=44 Identities=18% Similarity=0.264 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHh---cCCCEEEEec
Q 031713 77 LGRAKEICAKHGVVAETMTEMGDPKNVICEAAEK---HKIQLLIVGS 120 (154)
Q Consensus 77 l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~---~~~dlivlg~ 120 (154)
++.+.+.++..++.-...+..|+..+.+-..... ..+|+|++..
T Consensus 102 ~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~ 148 (225)
T 3tr6_A 102 TALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA 148 (225)
T ss_dssp HHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS
T ss_pred HHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECC
Confidence 3444444555555433445567766555444322 5788888754
No 482
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=23.78 E-value=1.8e+02 Score=20.04 Aligned_cols=76 Identities=11% Similarity=-0.007 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEEecCChhhHH--HHHHHhcCCCEEEEecCCC---CCcc-cccccchhHHHhhcCCCcE
Q 031713 73 ALALLGRAKEICAKHGVVAETMTEMGDPKNVI--CEAAEKHKIQLLIVGSHSR---GPIQ-RAFLGSVSNYCVHNAKCPV 146 (154)
Q Consensus 73 ~~~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i--~~~a~~~~~dlivlg~~~~---~~~~-~~~~gs~~~~l~~~~~~pv 146 (154)
..+.++.+.+.... .+++-.-+...+..++| .+.+++.++|-+.+-..-. .... +-+. ..-..|...++.||
T Consensus 63 r~~v~~~~~~~~~g-rvpviaGvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~-~~f~~va~a~~lPi 140 (309)
T 3fkr_A 63 RDVLTRTILEHVAG-RVPVIVTTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIF-EFYARVSDAIAIPI 140 (309)
T ss_dssp HHHHHHHHHHHHTT-SSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHH-HHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHhCC-CCcEEEecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHH-HHHHHHHHhcCCCE
Confidence 34445555444422 34443333222444444 4578889999998876532 1222 2222 23356788889999
Q ss_pred EEEc
Q 031713 147 LVVR 150 (154)
Q Consensus 147 liv~ 150 (154)
++..
T Consensus 141 ilYn 144 (309)
T 3fkr_A 141 MVQD 144 (309)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9874
No 483
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=23.78 E-value=1.9e+02 Score=22.29 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=32.5
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+....+.+.+.++..||.-+.. |.++..+.+.-| |||+.+-+.
T Consensus 361 ia~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~Rp~~pI~a~t~~ 405 (587)
T 2e28_A 361 IGQSVAHTALNLDVAAIVTPTVS---------GKTPQMVAKYRPKAPIIAVTSN 405 (587)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEESS
T ss_pred HHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhcCCCCCEEEECCC
Confidence 45555677888999988887652 567777887776 999988543
No 484
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=23.78 E-value=1.7e+02 Score=22.76 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=32.1
Q ss_pred hhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCC-CcEEEEcCC
Q 031713 100 PKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAK-CPVLVVRKP 152 (154)
Q Consensus 100 ~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~-~pvliv~~~ 152 (154)
.+....+.+.+.++..||.-+.. |.++..+.+.-| |||+.+-+.
T Consensus 380 ia~aa~~~a~~l~a~aIv~~T~s---------G~ta~~isr~RP~~pIia~t~~ 424 (606)
T 3t05_A 380 IGISVAHTALNLNVKAIVAATES---------GSTARTISKYRPHSDIIAVTPS 424 (606)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEEcCC---------chHHHHHHhhCCCCCEEEEcCC
Confidence 34445566888899999887652 567777887777 999988553
No 485
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=23.75 E-value=1.6e+02 Score=19.32 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCChh--hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGDPK--NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~~~--~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
...++.+.+.+++.|..+......++.. ...++.....++|-||+.......... .... -.-+...++||+++-
T Consensus 31 ~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~--~~~~-~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 31 PSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTP--NIGY-YLNLEKNGIPFAMIN 106 (298)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCT--THHH-HHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCC--cHHH-HHHHHhcCCCEEEEe
Confidence 3455666677777888776655444543 345566667899999986543221110 0011 234556789988874
No 486
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=23.69 E-value=2.1e+02 Score=20.70 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHcccCCCCCeEEEEEeccCCchhhcccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Q 031713 15 CRHYALQWALENLGDAISKSDLIIFTARPTEFIYVQASMFGAAPPDLLMSIQENQKKAALALLGRAKEICAKHGVVAETM 94 (154)
Q Consensus 15 ~~~~~l~~a~~la~~~~~~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 94 (154)
.-...++.-.++++......++.++|...-.. .+++.+.+.+.+.+.|++....
T Consensus 247 ~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGn--------------------------Te~mA~~ia~gl~~~Gv~~~~~ 300 (410)
T 4dik_A 247 DPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGF--------------------------VENVMKKAIDSLKEKGFTPVVY 300 (410)
T ss_dssp CHHHHHHHHHHHHHTCCCTTEEEEEEECSSSH--------------------------HHHHHHHHHHHHHHTTCEEEEE
T ss_pred CHHHHHHHHHHhhcccccccceeeEEecccCh--------------------------HHHHHHHHHHHHHhcCCceEEE
Confidence 34556666566665321224677777644322 2455666777777789886543
Q ss_pred Eec---CChhhHHHHHHHhcCCCEEEEecCCCC
Q 031713 95 TEM---GDPKNVICEAAEKHKIQLLIVGSHSRG 124 (154)
Q Consensus 95 v~~---g~~~~~i~~~a~~~~~dlivlg~~~~~ 124 (154)
-.. ......|+..+. ++|-||+|+...+
T Consensus 301 ~~~d~~~~~~s~i~~~i~--~~~~ivlGspT~~ 331 (410)
T 4dik_A 301 KFSDEERPAISEILKDIP--DSEALIFGVSTYE 331 (410)
T ss_dssp EECSSCCCCHHHHHHHST--TCSEEEEEECCTT
T ss_pred EeccCCCCCHHHHHHHHH--hCCeEEEEeCCcC
Confidence 222 223455655555 8999999998654
No 487
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=23.61 E-value=1.5e+02 Score=18.81 Aligned_cols=26 Identities=4% Similarity=0.178 Sum_probs=21.0
Q ss_pred HHHHHHHhcCCCEEEEecCCCCCccc
Q 031713 103 VICEAAEKHKIQLLIVGSHSRGPIQR 128 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~~~~~~~~ 128 (154)
-+.+++++.+++.+|.|-+.-..++.
T Consensus 92 l~vd~~~~~~a~~ivrGlr~~~Dfey 117 (177)
T 3nbk_A 92 LVVDFVRSCGMTAIVKGLRTGTDFEY 117 (177)
T ss_dssp CHHHHHHHTTCCEEEEEECTTCCHHH
T ss_pred hHHHHHHHcCCCEEEECCCchhHHHH
Confidence 57789999999999999876555554
No 488
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=23.58 E-value=2.1e+02 Score=20.63 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=28.2
Q ss_pred cEEEEEecCCchHHHHHHHHHHHcccCCCCCeEEEEE
Q 031713 4 KKVMVAIDESECRHYALQWALENLGDAISKSDLIIFT 40 (154)
Q Consensus 4 ~~iLv~vd~~~~~~~~l~~a~~la~~~~~~~~l~~l~ 40 (154)
++|+++.|++.....+...++......| ..+.++.
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g--~~~~v~~ 322 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAG--VEVYPVY 322 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTT--CEEEEEC
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCC--CeEEEEE
Confidence 6899999999999999888888877666 5666553
No 489
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=23.55 E-value=1e+02 Score=17.06 Aligned_cols=47 Identities=9% Similarity=0.068 Sum_probs=26.5
Q ss_pred hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 101 KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 101 ~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
.+...+..+...+|++++...-.+ ..+. .....+-.. ..+|++++-.
T Consensus 40 ~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 89 (129)
T 1p6q_A 40 GEQGMKIMAQNPHHLVISDFNMPK-MDGL---GLLQAVRANPATKKAAFIILTA 89 (129)
T ss_dssp HHHHHHHHHTSCCSEEEECSSSCS-SCHH---HHHHHHTTCTTSTTCEEEECCS
T ss_pred HHHHHHHHHcCCCCEEEEeCCCCC-CCHH---HHHHHHhcCccccCCCEEEEeC
Confidence 344456667778999999875322 2211 233444432 3478887743
No 490
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=23.54 E-value=2.2e+02 Score=20.90 Aligned_cols=29 Identities=14% Similarity=-0.033 Sum_probs=22.4
Q ss_pred chHHHHHHHHHHHcccCCCCCeEEEEEeccC
Q 031713 14 ECRHYALQWALENLGDAISKSDLIIFTARPT 44 (154)
Q Consensus 14 ~~~~~~l~~a~~la~~~~~~~~l~~l~v~~~ 44 (154)
..++..+++|+++|+..+ .+|+++|=..-
T Consensus 203 ~~ieRIar~AFe~A~~r~--~kVt~v~KaNV 231 (427)
T 2qfy_A 203 ESIEGFAHSSFKLAIDKK--LNLFLSTKNTI 231 (427)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCEEEEECTTT
T ss_pred HHHHHHHHHHHHHHHHhC--CceEEEECCcc
Confidence 678889999999999876 67877765333
No 491
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=23.53 E-value=2.1e+02 Score=20.50 Aligned_cols=64 Identities=11% Similarity=0.043 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
+.+.++.-...+.|+++-+.+..-...+.+.+ -+|++-+|++..... .-..+...+.+||.+=+
T Consensus 124 ~ilr~ll~~~~e~GlPv~TEvld~~~~~~vad-----~vd~~qIGAR~~esq-------~hr~~asg~~~PVg~Kn 187 (350)
T 1n8f_A 124 RIARKLLLDINDSGLPAAGEFLDMITPQYLAD-----LMSWGAIGARTTESQ-------VHRELASGLSCPVGFKN 187 (350)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCCSSTHHHHGG-----GCSEEEECTTTTTCH-------HHHHHHHTCSSCEEEEC
T ss_pred HHHHHHHHHHHHhCCceEEeecCcccHHHHhh-----cCcEEEECCccccCH-------HHHHHHhcCCCeEEEec
Confidence 33444433355779999888876544433332 588999999853322 22456667889988643
No 492
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=23.48 E-value=1.1e+02 Score=17.47 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCCEEEEecC
Q 031713 103 VICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 103 ~i~~~a~~~~~dlivlg~~ 121 (154)
..++..+...+|++++...
T Consensus 40 ~al~~~~~~~~dlvllD~~ 58 (141)
T 3cu5_A 40 NAIQIALKHPPNVLLTDVR 58 (141)
T ss_dssp HHHHHHTTSCCSEEEEESC
T ss_pred HHHHHHhcCCCCEEEEeCC
Confidence 3334445556777777654
No 493
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=23.38 E-value=2.3e+02 Score=21.33 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=31.8
Q ss_pred hcCCeEEEEEecCChhhHHHHHHHhcCCCEEEEecC
Q 031713 86 KHGVVAETMTEMGDPKNVICEAAEKHKIQLLIVGSH 121 (154)
Q Consensus 86 ~~~~~~~~~v~~g~~~~~i~~~a~~~~~dlivlg~~ 121 (154)
..|..-++.+..|+..+.|.++++-.++++++++..
T Consensus 444 ~~G~~HH~~~~~g~~~~~L~~~a~~lgie~~~i~~~ 479 (500)
T 4f2d_A 444 LAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDND 479 (500)
T ss_dssp HTTCCSEEEEESSCCHHHHHHHHHHTTCEEEEESTT
T ss_pred HcCCCCeEEEECCCCHHHHHHHHHHcCCEEEEECCC
Confidence 357777888889999999999999999999999854
No 494
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=23.32 E-value=69 Score=18.67 Aligned_cols=16 Identities=19% Similarity=0.139 Sum_probs=8.1
Q ss_pred HHHHHhcCCCEEEEec
Q 031713 105 CEAAEKHKIQLLIVGS 120 (154)
Q Consensus 105 ~~~a~~~~~dlivlg~ 120 (154)
...+++.++-.+++++
T Consensus 61 ~~lC~~~~VP~~~v~s 76 (113)
T 3jyw_G 61 PALCKKMGVPYAIVKG 76 (113)
T ss_dssp HHHHHHTTCCCEECSC
T ss_pred HHHHHHcCCCEEEECC
Confidence 3445555555555543
No 495
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=23.23 E-value=1.1e+02 Score=19.71 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=21.9
Q ss_pred HHHHhcCCeEEEEEecCChhhHHHHHHHh---cCCCEEEEecC
Q 031713 82 EICAKHGVVAETMTEMGDPKNVICEAAEK---HKIQLLIVGSH 121 (154)
Q Consensus 82 ~~~~~~~~~~~~~v~~g~~~~~i~~~a~~---~~~dlivlg~~ 121 (154)
+.+...|+.-...+..|+..+.+.....+ ..+|+|++...
T Consensus 115 ~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 115 KYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp HHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred HHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 33334454333445567766655544332 57898887643
No 496
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.20 E-value=1.7e+02 Score=19.30 Aligned_cols=68 Identities=7% Similarity=0.067 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEEecCCh--hhHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhcCCCcEEEEc
Q 031713 75 ALLGRAKEICAKHGVVAETMTEMGDP--KNVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHNAKCPVLVVR 150 (154)
Q Consensus 75 ~~l~~~~~~~~~~~~~~~~~v~~g~~--~~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~~~~pvliv~ 150 (154)
..++.+.+.+++.|..+......+++ ...+++.....++|-||+...... . .... .+...++|++++-
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~-~l~~~~iPvV~~~ 94 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN--D-----PRVQ-FLLKQKFPFVAFG 94 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT--C-----HHHH-HHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC--c-----HHHH-HHHhcCCCEEEEC
Confidence 44556666666678665443222333 345666667788999888653221 1 1223 3455788988874
No 497
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=23.10 E-value=77 Score=22.56 Aligned_cols=24 Identities=8% Similarity=0.015 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCCeEEEEEecCC
Q 031713 74 LALLGRAKEICAKHGVVAETMTEMGD 99 (154)
Q Consensus 74 ~~~l~~~~~~~~~~~~~~~~~v~~g~ 99 (154)
...++++.+.+.+.++ ...+..||
T Consensus 46 ~~~l~~~v~~~~~~~~--D~VliaGD 69 (386)
T 3av0_A 46 YDSFKLCIKKILEIKP--DVVLHSGD 69 (386)
T ss_dssp HHHHHHHHHHHHTTCC--SEEEECSC
T ss_pred HHHHHHHHHHHHHcCC--CEEEECCC
Confidence 3456666666655454 45566665
No 498
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=23.05 E-value=1.3e+02 Score=19.21 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=25.2
Q ss_pred cCCeEEEEEec----------CChhhHHHHHHHhcCCCEEEEec
Q 031713 87 HGVVAETMTEM----------GDPKNVICEAAEKHKIQLLIVGS 120 (154)
Q Consensus 87 ~~~~~~~~v~~----------g~~~~~i~~~a~~~~~dlivlg~ 120 (154)
.|++++..... ......++...+..++|+++-+.
T Consensus 47 lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~~ 90 (259)
T 3g3k_A 47 LGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPL 90 (259)
T ss_dssp HTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSSC
T ss_pred cCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEeee
Confidence 37888776654 23678888899999999987543
No 499
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=23.00 E-value=54 Score=23.77 Aligned_cols=43 Identities=9% Similarity=0.066 Sum_probs=22.7
Q ss_pred HHHHHhcCCeEEEEE-ecCChhhHHHHHHHhcCCCEEEEecCCC
Q 031713 81 KEICAKHGVVAETMT-EMGDPKNVICEAAEKHKIQLLIVGSHSR 123 (154)
Q Consensus 81 ~~~~~~~~~~~~~~v-~~g~~~~~i~~~a~~~~~dlivlg~~~~ 123 (154)
.+.+++.|+++-.-. ..-...+.+.+.+++.++-++|-...+.
T Consensus 124 ~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~PvvvKp~~g~ 167 (446)
T 3ouz_A 124 KQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKAAAGG 167 (446)
T ss_dssp HHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCSSEEEEETTCC
T ss_pred HHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCCCEEEEECCCC
Confidence 344555666643221 0112344556666777777777766544
No 500
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=22.97 E-value=53 Score=26.30 Aligned_cols=46 Identities=15% Similarity=0.329 Sum_probs=29.3
Q ss_pred hHHHHHHHhcCCCEEEEecCCCCCcccccccchhHHHhhc---CCCcEEEEcC
Q 031713 102 NVICEAAEKHKIQLLIVGSHSRGPIQRAFLGSVSNYCVHN---AKCPVLVVRK 151 (154)
Q Consensus 102 ~~i~~~a~~~~~dlivlg~~~~~~~~~~~~gs~~~~l~~~---~~~pvliv~~ 151 (154)
+.|.++++.+++++|++|....+.-... +...+++. .++|++++.+
T Consensus 373 ~~l~~li~~~~~~~IaIGngtasret~~----~v~~l~~~~~~~~i~~v~v~e 421 (785)
T 3bzc_A 373 AVLAALCAKHQVELIAIGNGTASRETDK----LAGELIKKYPGMKLTKIMVSE 421 (785)
T ss_dssp HHHHHHHHHHTCCEEEEESSTTHHHHHH----HHHHHHHHCGGGCCEEEEECC
T ss_pred HHHHHHHHHcCCCEEEECCCccCHHHHH----HHHHHHHhcccCCCCEEEEcC
Confidence 5788899999999999997432221122 23344433 3578777754
Done!