Query 031715
Match_columns 154
No_of_seqs 116 out of 1143
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:21:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5078 Ubiquitin-protein liga 100.0 1.5E-46 3.3E-51 277.7 12.6 131 14-150 6-136 (153)
2 KOG0417 Ubiquitin-protein liga 100.0 1.3E-45 2.7E-50 268.2 10.8 128 15-149 3-130 (148)
3 KOG0419 Ubiquitin-protein liga 100.0 5.6E-43 1.2E-47 248.6 10.3 133 11-150 2-134 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 1.3E-41 2.7E-46 252.8 13.5 130 15-151 4-133 (152)
5 PLN00172 ubiquitin conjugating 100.0 2.4E-41 5.2E-46 250.1 13.3 129 15-150 3-131 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 1.6E-40 3.5E-45 242.3 10.7 132 15-150 7-149 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 3.9E-39 8.4E-44 232.0 11.4 134 15-149 6-140 (158)
8 KOG0418 Ubiquitin-protein liga 100.0 1.6E-38 3.5E-43 237.9 8.8 132 14-151 4-138 (200)
9 PF00179 UQ_con: Ubiquitin-con 100.0 2.4E-38 5.1E-43 231.7 9.1 129 17-150 1-129 (140)
10 KOG0426 Ubiquitin-protein liga 100.0 6.8E-38 1.5E-42 223.0 10.1 132 14-149 5-147 (165)
11 KOG0421 Ubiquitin-protein liga 100.0 5.7E-38 1.2E-42 226.2 7.8 130 15-151 31-160 (175)
12 cd00195 UBCc Ubiquitin-conjuga 100.0 5.6E-37 1.2E-41 224.8 11.9 129 16-150 2-130 (141)
13 smart00212 UBCc Ubiquitin-conj 100.0 5.4E-36 1.2E-40 220.5 12.5 130 16-150 1-130 (145)
14 KOG0422 Ubiquitin-protein liga 100.0 8.7E-34 1.9E-38 203.4 9.6 130 15-150 4-133 (153)
15 KOG0420 Ubiquitin-protein liga 100.0 6.1E-32 1.3E-36 200.0 8.4 132 12-150 27-159 (184)
16 KOG0427 Ubiquitin conjugating 100.0 8.1E-31 1.8E-35 186.5 13.3 127 14-150 16-143 (161)
17 KOG0416 Ubiquitin-protein liga 100.0 5.6E-31 1.2E-35 194.6 7.7 127 15-150 5-132 (189)
18 KOG0423 Ubiquitin-protein liga 100.0 2.6E-30 5.6E-35 191.7 2.7 130 15-151 12-141 (223)
19 KOG0894 Ubiquitin-protein liga 99.9 5.3E-26 1.2E-30 173.9 12.9 116 14-136 6-124 (244)
20 KOG0896 Ubiquitin-conjugating 99.9 3.8E-24 8.3E-29 152.8 8.9 138 9-146 1-138 (138)
21 KOG0428 Non-canonical ubiquiti 99.8 1E-20 2.2E-25 147.6 11.6 114 9-130 7-121 (314)
22 KOG0429 Ubiquitin-conjugating 99.8 7.8E-19 1.7E-23 135.0 9.6 128 15-149 21-153 (258)
23 KOG0895 Ubiquitin-conjugating 99.6 1.5E-15 3.3E-20 137.4 7.6 111 15-130 853-970 (1101)
24 KOG0895 Ubiquitin-conjugating 99.5 4.3E-14 9.2E-19 128.1 11.6 115 12-131 281-404 (1101)
25 KOG0897 Predicted ubiquitin-co 98.8 2.6E-09 5.7E-14 74.8 3.2 67 67-134 14-80 (122)
26 PF14461 Prok-E2_B: Prokaryoti 98.4 5.3E-07 1.1E-11 65.5 5.8 67 62-131 34-106 (133)
27 PF05743 UEV: UEV domain; Int 98.2 4.5E-06 9.8E-11 59.8 6.3 78 46-131 32-117 (121)
28 KOG2391 Vacuolar sorting prote 97.5 0.00031 6.8E-09 58.0 7.0 95 31-133 37-139 (365)
29 PF08694 UFC1: Ubiquitin-fold 97.1 0.00032 6.9E-09 51.3 2.6 96 15-122 26-135 (161)
30 PF14462 Prok-E2_E: Prokaryoti 95.6 0.31 6.8E-06 35.0 10.4 89 34-130 14-120 (122)
31 PF14457 Prok-E2_A: Prokaryoti 95.4 0.13 2.8E-06 38.6 8.0 62 68-131 57-126 (162)
32 PF05773 RWD: RWD domain; Int 95.1 0.088 1.9E-06 35.9 5.9 68 17-89 5-74 (113)
33 KOG3357 Uncharacterized conser 94.8 0.04 8.7E-07 39.9 3.5 95 15-121 29-137 (167)
34 smart00591 RWD domain in RING 93.0 0.38 8.3E-06 32.4 5.8 26 63-88 40-65 (107)
35 PF09765 WD-3: WD-repeat regio 85.1 2 4.4E-05 35.2 5.1 86 14-129 100-186 (291)
36 KOG0309 Conserved WD40 repeat- 78.7 11 0.00025 35.0 7.7 40 48-88 450-491 (1081)
37 smart00340 HALZ homeobox assoc 70.2 4.1 8.8E-05 23.8 1.9 16 14-29 20-35 (44)
38 PF06113 BRE: Brain and reprod 65.0 18 0.0004 30.3 5.5 66 48-128 55-123 (333)
39 KOG4018 Uncharacterized conser 61.2 7.8 0.00017 30.4 2.5 20 65-84 50-69 (215)
40 cd00421 intradiol_dioxygenase 52.4 24 0.00051 25.7 3.8 25 63-87 65-90 (146)
41 cd03457 intradiol_dioxygenase_ 49.5 27 0.00058 26.8 3.8 25 64-88 87-111 (188)
42 cd03459 3,4-PCD Protocatechuat 41.9 43 0.00093 24.9 3.8 24 64-87 73-101 (158)
43 PF08203 RNA_polI_A14: Yeast R 40.8 13 0.00027 24.5 0.7 18 8-25 54-71 (76)
44 KOG0177 20S proteasome, regula 40.5 9.1 0.0002 29.6 -0.0 43 98-142 135-177 (200)
45 PF09606 Med15: ARC105 or Med1 37.4 11 0.00024 35.2 0.0 26 65-90 715-740 (799)
46 PF06113 BRE: Brain and reprod 35.1 58 0.0013 27.4 3.9 25 63-87 305-329 (333)
47 PF03366 YEATS: YEATS family; 34.7 1.4E+02 0.0029 19.8 5.0 40 47-88 2-41 (84)
48 KOG4445 Uncharacterized conser 33.0 52 0.0011 27.4 3.2 25 64-88 45-69 (368)
49 TIGR02423 protocat_alph protoc 31.0 74 0.0016 24.5 3.6 24 64-87 97-125 (193)
50 KOG1047 Bifunctional leukotrie 28.4 55 0.0012 29.5 2.8 29 59-88 248-279 (613)
51 cd03463 3,4-PCD_alpha Protocat 28.4 89 0.0019 23.9 3.7 23 64-86 93-120 (185)
52 PF09943 DUF2175: Uncharacteri 27.8 56 0.0012 22.7 2.2 20 48-69 2-21 (101)
53 TIGR03737 PRTRC_B PRTRC system 26.0 1.1E+02 0.0024 24.3 3.9 37 87-130 131-171 (228)
54 cd05845 Ig2_L1-CAM_like Second 25.3 1.1E+02 0.0023 20.7 3.3 26 61-88 16-41 (95)
55 PF00845 Gemini_BL1: Geminivir 22.9 1.7E+02 0.0037 23.7 4.4 43 48-90 104-154 (276)
56 KOG3203 Mitochondrial/chloropl 21.6 45 0.00099 25.0 0.9 15 87-103 49-63 (165)
57 PF04447 DUF550: Protein of un 21.3 1.2E+02 0.0026 21.0 2.8 27 4-32 15-41 (100)
58 TIGR02439 catechol_proteo cate 20.7 1.4E+02 0.0031 24.5 3.7 24 64-87 181-222 (285)
No 1
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-46 Score=277.69 Aligned_cols=131 Identities=33% Similarity=0.490 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCc
Q 031715 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (154)
Q Consensus 14 r~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (154)
+.+||++|+++|+++++++ +++.+.+++| +++|+++|.||++||||||+|++.|.||++||++||+|+|.++|||||
T Consensus 6 a~~RL~kE~~~l~~~~~~~-~~a~p~~d~~--l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN 82 (153)
T COG5078 6 ALKRLLKELKKLQKDPPPG-ISAGPVDDDN--LFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN 82 (153)
T ss_pred HHHHHHHHHHHHhcCCCCc-eEEEECCCCc--ceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence 5889999999999999888 7787766657 569999999999999999999999999999999999999999999999
Q ss_pred eecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 94 VNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 94 v~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
|| .+|+||+++|+ ++|+|+++|++||++|+++|.+||.++|+|.|||++|+++.
T Consensus 83 V~-~~G~vCLdIL~--~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~ 136 (153)
T COG5078 83 VD-PSGNVCLDILK--DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDK 136 (153)
T ss_pred cC-CCCCChhHHHh--CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCH
Confidence 99 59999999997 99999999999999999999999999999999999998865
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-45 Score=268.17 Aligned_cols=128 Identities=25% Similarity=0.454 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCce
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv 94 (154)
.+||.||+++|+++++++ +++. ++++| +++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||
T Consensus 3 ~~RI~kE~~~l~~dp~~~-~~~~-~~~dn--l~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI 78 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPG-CSAG-PVGDN--LFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNI 78 (148)
T ss_pred HHHHHHHHHHHhcCCCCC-CccC-CCCCc--eeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCc
Confidence 469999999999999988 7777 46778 4599999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhh
Q 031715 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDV 149 (154)
Q Consensus 95 ~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~ 149 (154)
+ ..|.||+++|+ ++|+|+++|.+||++|+++|.+|++++|+.+++|.+|+.+
T Consensus 79 ~-~~G~IclDILk--~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d 130 (148)
T KOG0417|consen 79 D-SNGRICLDILK--DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTD 130 (148)
T ss_pred C-ccccchHHhhh--ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhh
Confidence 9 59999999997 8899999999999999999999999999999999999864
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-43 Score=248.64 Aligned_cols=133 Identities=24% Similarity=0.457 Sum_probs=123.1
Q ss_pred ccchHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccc
Q 031715 11 VVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (154)
Q Consensus 11 ~~pr~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~ 90 (154)
+.|.-+||++|+++++++++.| ++..+ .++| ++.|.+.|+||.+|||+||+|++.|.|+++||.+||.|+|++.+|
T Consensus 2 stpArrrLmrDfkrlqedpp~g-isa~P-~~~n--iM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mF 77 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQEDPPAG-ISAAP-VENN--IMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMF 77 (152)
T ss_pred CchHHHHHHHHHHHhhcCCCCC-ccCCC-Cccc--eeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeecc
Confidence 4567889999999999999999 55554 5667 569999999999999999999999999999999999999999999
Q ss_pred cCceecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 91 MTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 91 HPnv~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
|||||+ +|.+|+++|+ ..|+|.|++..||.+||+||.+|++.+|+|-|||.+|.+..
T Consensus 78 HPNvya-~G~iClDiLq--NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~ 134 (152)
T KOG0419|consen 78 HPNVYA-DGSICLDILQ--NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENK 134 (152)
T ss_pred CCCcCC-CCcchHHHHh--cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhCh
Confidence 999997 8999999996 89999999999999999999999999999999999998653
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.3e-41 Score=252.81 Aligned_cols=130 Identities=22% Similarity=0.388 Sum_probs=120.9
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCce
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv 94 (154)
.|||++|++++++++.++ +.+.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus 4 ~kRl~~E~~~l~~~~~~~-i~~~~-~~~d--~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV 79 (152)
T PTZ00390 4 SKRIEKETQNLANDPPPG-IKAEP-DPGN--YRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79 (152)
T ss_pred HHHHHHHHHHHHhCCCCC-eEEEE-CCCC--ccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceE
Confidence 689999999999999888 55654 5567 4599999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhhc
Q 031715 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 151 (154)
Q Consensus 95 ~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~~ 151 (154)
+. +|.||+++|. ++|+|++||.+||++|+++|.+|++++|.|.++|.+|.++..
T Consensus 80 ~~-~G~iCl~iL~--~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~ 133 (152)
T PTZ00390 80 DK-LGRICLDILK--DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRA 133 (152)
T ss_pred CC-CCeEECccCc--ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHH
Confidence 95 9999999996 899999999999999999999999999999999999988653
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=2.4e-41 Score=250.11 Aligned_cols=129 Identities=22% Similarity=0.409 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCce
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv 94 (154)
.+||++|++++++++.++ +.+.+ +++| +++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus 3 ~~Rl~kE~~~l~~~~~~~-~~~~~-~~~n--l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv 78 (147)
T PLN00172 3 TKRIQKEHKDLLKDPPSN-CSAGP-SDEN--LFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI 78 (147)
T ss_pred HHHHHHHHHHHHhCCCCC-eEEEE-CCCC--hheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceE
Confidence 579999999999988888 67775 5567 5599999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 95 ~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
+. +|.||+++|. ++|+|+++|++||.+|+++|.+|+.++|.|+++|++|.++.
T Consensus 79 ~~-~G~iCl~il~--~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~ 131 (147)
T PLN00172 79 NS-NGSICLDILR--DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENR 131 (147)
T ss_pred CC-CCEEEcccCc--CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCH
Confidence 95 9999999986 89999999999999999999999999999999999998764
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-40 Score=242.27 Aligned_cols=132 Identities=26% Similarity=0.427 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCce
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv 94 (154)
..-|+++|++|++++.+| +++++.+++|++ +|.+.|+||++|.||||.|+..+.||.+||.+||+++|.++||||||
T Consensus 7 ~~ll~~qlk~L~~~pv~g-f~~glvd~~dif--~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNv 83 (171)
T KOG0425|consen 7 SLLLLKQLKELQEEPVEG-FSVGLVDDSDIF--EWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNV 83 (171)
T ss_pred HHHHHHHHHHHhcCCCCc-cccccccCCcee--EEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCc
Confidence 347899999999999999 899999998965 99999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEeccCCCC-----------CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 95 NHETGVVEPKKFGL-----------LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 95 ~~~~G~vcl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
|. +|.+|.++|+. .+.|.|.+|+++||++|.+||++||.++|+|.+|++.|++..
T Consensus 84 y~-~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~ 149 (171)
T KOG0425|consen 84 YE-DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENP 149 (171)
T ss_pred CC-CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCH
Confidence 95 99999999961 368999999999999999999999999999999999999875
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-39 Score=232.01 Aligned_cols=134 Identities=22% Similarity=0.323 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCC-CCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCc
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGD-DIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~-~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (154)
..||+.|-+.+.++.+-|+++....+.+ .++++.|+|.|.|+.||+||||.|.+++.||++||+.||+++|.+++||||
T Consensus 6 ~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPN 85 (158)
T KOG0424|consen 6 LNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPN 85 (158)
T ss_pred HHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCCcCCC
Confidence 6699999999999999997777766555 445889999999999999999999999999999999999999999999999
Q ss_pred eecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhh
Q 031715 94 VNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDV 149 (154)
Q Consensus 94 v~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~ 149 (154)
||+ +|.|||++|+...+|+|+.||.+||..||+||.+||..+|+|.||...|.++
T Consensus 86 Vyp-sgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~ 140 (158)
T KOG0424|consen 86 VYP-SGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQD 140 (158)
T ss_pred cCC-CCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhC
Confidence 998 9999999998444699999999999999999999999999999998888765
No 8
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-38 Score=237.94 Aligned_cols=132 Identities=23% Similarity=0.400 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhHcCC---CCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccc
Q 031715 14 RNFRLLEELERGEKGI---GDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (154)
Q Consensus 14 r~~RL~~El~~l~~~~---~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~ 90 (154)
+.+||++|++++.+++ ..+ +.+...++ + +.+.++.|.||+|||||||+|.+.|++|++|||+||+|+|.|+||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~-I~ve~vn~-~--~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIw 79 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAG-IIVEMVNE-N--LKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIW 79 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcc-eEEEEccC-C--hhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeee
Confidence 5789999999999877 455 66666664 4 459999999999999999999999999999999999999999999
Q ss_pred cCceecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhhc
Q 031715 91 MTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 151 (154)
Q Consensus 91 HPnv~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~~ 151 (154)
||||.+.+|.||+++|. +.|++++||.++|++||++|..|++.+|....-+++|+++|.
T Consensus 80 HPnVSs~tGaICLDilk--d~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~ 138 (200)
T KOG0418|consen 80 HPNVSSQTGAICLDILK--DQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYE 138 (200)
T ss_pred cCCCCcccccchhhhhh--cccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHH
Confidence 99999999999999997 999999999999999999999999999999999999998875
No 9
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=2.4e-38 Score=231.71 Aligned_cols=129 Identities=27% Similarity=0.463 Sum_probs=113.9
Q ss_pred HHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCceec
Q 031715 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNH 96 (154)
Q Consensus 17 RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~ 96 (154)
||++|+++++++++.+ +.+.+.+++|+ .+|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+
T Consensus 1 Rl~~E~~~l~~~~~~~-~~~~~~~~~~~--~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~- 76 (140)
T PF00179_consen 1 RLQKELKELQKNPPPG-ISVQPSEDDNL--FEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNID- 76 (140)
T ss_dssp HHHHHHHHHHHSHTTT-EEEEEESTTET--TEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB--
T ss_pred CHHHHHHHHhhCCCCC-EEEEECCCCCh--heEEEEEeccCccceeccccccccccccccccccccccccccccccccc-
Confidence 8999999999999888 67776554464 4999999999999999999999999999999999999999999999999
Q ss_pred CCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 97 ETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 97 ~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
.+|.||+++|. .+.|+|.++|.+||.+|+++|.+|+.+++.|.+++.+|.+..
T Consensus 77 ~~G~icl~~l~-~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~ 129 (140)
T PF00179_consen 77 ENGRICLDILN-PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDR 129 (140)
T ss_dssp TTSBBGHGGGT-TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCH
T ss_pred ccccchhhhhh-cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCH
Confidence 59999999986 446999999999999999999999999999999999998654
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-38 Score=222.96 Aligned_cols=132 Identities=22% Similarity=0.354 Sum_probs=123.4
Q ss_pred hHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCc
Q 031715 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (154)
Q Consensus 14 r~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (154)
.+|||++|+++|.+++++| +.+++.++||++ +|.|.|.||++|+|+||+|-.++.||.+||..||+++|...+||||
T Consensus 5 AlkRLm~EykqLt~~~P~G-IvAgP~~EdnfF--~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN 81 (165)
T KOG0426|consen 5 ALKRLMAEYKQLTLNPPEG-IVAGPINEDNFF--EWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN 81 (165)
T ss_pred HHHHHHHHHHHHccCCCCc-ceeCCCCcccee--eeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence 4889999999999999999 567777899955 9999999999999999999999999999999999999999999999
Q ss_pred eecCCCeEeccCCCC-----------CCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhh
Q 031715 94 VNHETGVVEPKKFGL-----------LVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDV 149 (154)
Q Consensus 94 v~~~~G~vcl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~ 149 (154)
|++ +|+||.++|+. .+.|+|..+++.||+++.+||.+||.++.+|.+|+++.++.
T Consensus 82 iy~-dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~ 147 (165)
T KOG0426|consen 82 IYP-DGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWRED 147 (165)
T ss_pred ccC-CCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHh
Confidence 996 99999999962 36899999999999999999999999999999999988764
No 11
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-38 Score=226.18 Aligned_cols=130 Identities=28% Similarity=0.423 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCce
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv 94 (154)
.|||++||..|+....+| +++. |++|| |+.|.++|.||.+|+|||-.|++.+.||.+||++||+|+|.|+.|||||
T Consensus 31 ~KRLq~ELm~Lmms~~~g-ISAF-P~~dn--lf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNV 106 (175)
T KOG0421|consen 31 TKRLQSELMGLMMSNTPG-ISAF-PESDN--LFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNV 106 (175)
T ss_pred HHHHHHHHHHHHhcCCCC-cccC-cCcCc--eeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCc
Confidence 789999999999988899 5665 47777 5599999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhhc
Q 031715 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 151 (154)
Q Consensus 95 ~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~~ 151 (154)
|. .|.||+++|. +.|+..|++++||++||++|.+||+++|.|.-||.+..+--+
T Consensus 107 D~-~GnIcLDILk--dKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~e 160 (175)
T KOG0421|consen 107 DL-SGNICLDILK--DKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEE 160 (175)
T ss_pred cc-cccchHHHHH--HHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHH
Confidence 95 9999999997 999999999999999999999999999999999987765443
No 12
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=5.6e-37 Score=224.79 Aligned_cols=129 Identities=29% Similarity=0.464 Sum_probs=118.3
Q ss_pred HHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCcee
Q 031715 16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 95 (154)
Q Consensus 16 ~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~ 95 (154)
|||++|++++++++.++ +.+.+ .++| +++|+++|.||++|||+||.|+++|.||++||++||+|+|.++++||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~-~~v~~-~~~~--~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~ 77 (141)
T cd00195 2 KRLQKELKDLKKDPPSG-ISAEP-VEEN--LLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77 (141)
T ss_pred chHHHHHHHHHhCCCCC-eEEEE-CCCC--hhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence 69999999999999888 66665 5556 45999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 96 HETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 96 ~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
.+|.||+++|. .+.|+|+++|++||.+|+++|.+|+.++++|++|+.+|.++.
T Consensus 78 -~~G~icl~~l~-~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~ 130 (141)
T cd00195 78 -ENGKICLSILK-THGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENR 130 (141)
T ss_pred -CCCCCchhhcC-CCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH
Confidence 59999999986 234999999999999999999999999999999999998743
No 13
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=5.4e-36 Score=220.48 Aligned_cols=130 Identities=29% Similarity=0.450 Sum_probs=117.9
Q ss_pred HHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCcee
Q 031715 16 FRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVN 95 (154)
Q Consensus 16 ~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~ 95 (154)
+||++|++++++++.++ +.+...+++| +++|+++|.||++|||+||+|++.|.||++||++||+|+|.++++||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~-~~v~~~~~~~--~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~ 77 (145)
T smart00212 1 KRLLKELKELLKDPPPG-ISAYPVDEDN--LLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD 77 (145)
T ss_pred ChHHHHHHHHHhCCCCC-eEEEECCCCC--hheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence 59999999999999888 4444333346 55999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 96 HETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 96 ~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
+ +|.+|++.|. .++|+|+++|++||.+|+++|.+|+.++++|++|+.+|.+..
T Consensus 78 ~-~G~icl~~l~-~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~ 130 (145)
T smart00212 78 S-SGEICLDILK-QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNR 130 (145)
T ss_pred C-CCCEehhhcC-CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCH
Confidence 6 9999999984 368999999999999999999999999999999999998754
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-34 Score=203.39 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCce
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv 94 (154)
.+||.+||..|+++....+-.+. .+++++ ..|++.|. |++-||..|.|+++|.||.+|||+||++.|.|+||||||
T Consensus 4 ~~Rl~kEL~dl~~~~~~~~rn~~-~~e~nl--l~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNV 79 (153)
T KOG0422|consen 4 PRRLRKELADLQKNKMKFFRNIE-VDEANL--LKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNV 79 (153)
T ss_pred hHHHHHHHHHHHhccHHHHhhhh-cccccc--eeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCC
Confidence 56999999999998866532233 466674 49999999 999999999999999999999999999999999999999
Q ss_pred ecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 95 ~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
|. .|.+|+.++. .++|+|++..++||+.+.+++++|+++.|.+-+.|..|.++.
T Consensus 80 De-~gqvClPiis-~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~ 133 (153)
T KOG0422|consen 80 DE-KGQVCLPIIS-AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDP 133 (153)
T ss_pred CC-CCceeeeeee-cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCH
Confidence 95 8999999995 899999999999999999999999999999999999998763
No 15
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.1e-32 Score=199.98 Aligned_cols=132 Identities=17% Similarity=0.261 Sum_probs=113.7
Q ss_pred cchHHHHHHHHHHhHcCCCCCceEEeecC-CCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccc
Q 031715 12 VPRNFRLLEELERGEKGIGDGTVSYGMDD-GDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRIN 90 (154)
Q Consensus 12 ~pr~~RL~~El~~l~~~~~~~~~~~~~~~-~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~ 90 (154)
..+..||++|+.+++-- +. ++...++ .++.+..+++++|. |+++.|+||.|.|.+.+|+.||++||+|+|.|+||
T Consensus 27 s~a~lrl~~di~elnLp--~t-~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~ 102 (184)
T KOG0420|consen 27 SAALLRLKKDILELNLP--PT-CSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY 102 (184)
T ss_pred cHHHHHHHhhhhhccCC--Cc-cccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence 33577888888777662 23 5555554 34433225999999 99999999999999999999999999999999999
Q ss_pred cCceecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 91 MTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 91 HPnv~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
||||| .+|.||+++|. ++|+|..+|.+|+.+++.+|.+|+.++|+|.+||+.+.+++
T Consensus 103 HPNId-~~GnVCLnILR--edW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~ 159 (184)
T KOG0420|consen 103 HPNID-LDGNVCLNILR--EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNR 159 (184)
T ss_pred cCCcC-CcchHHHHHHH--hcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCH
Confidence 99999 49999999997 99999999999999999999999999999999999988765
No 16
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.1e-31 Score=186.53 Aligned_cols=127 Identities=16% Similarity=0.277 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEeccc-ccC
Q 031715 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI-NMT 92 (154)
Q Consensus 14 r~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i-~HP 92 (154)
..+||+|||.++|.+++.| +... ..|+ |.+|.+-+.|.+||.|+|.+|++.++||+.||++.|+|.|..++ .||
T Consensus 16 at~RLqKEl~e~q~~pP~G-~~~~--v~dn--lqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HP 90 (161)
T KOG0427|consen 16 ATNRLQKELSEWQNNPPTG-FKHR--VTDN--LQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHP 90 (161)
T ss_pred HHHHHHHHHHHHhcCCCCc-ceee--cccc--hheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCC
Confidence 5789999999999999999 4444 3456 66999999999999999999999999999999999999999998 899
Q ss_pred ceecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 93 CVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 93 nv~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
+|++ +|.||+++|. ++|+|++++.+|.++|.+||.+-.. -..|.++..|.|+-
T Consensus 91 HiYS-NGHICL~iL~--d~WsPAmsv~SvClSIlSMLSSs~e--KqrP~Dn~~Yvk~C 143 (161)
T KOG0427|consen 91 HIYS-NGHICLDILY--DSWSPAMSVQSVCLSILSMLSSSKE--KQRPTDNDRYVKNC 143 (161)
T ss_pred ceec-CCeEEEEeec--ccCCcchhhHHHHHHHHHHHccCcc--ccCCCccchhhhhc
Confidence 9996 9999999996 9999999999999999999997433 34688888888763
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.6e-31 Score=194.60 Aligned_cols=127 Identities=16% Similarity=0.273 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCce
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv 94 (154)
.||+..|+..|.... ..+...++ + +.+++|.+.||.+||||||++++++.+|++||++.|.|.|.++||||||
T Consensus 5 ~rRid~Dv~KL~~s~----yeV~~ind-~--m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNI 77 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMSD----YEVTIIND-G--MQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNI 77 (189)
T ss_pred ccchhhHHHHHHhcC----CeEEEecC-c--ccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCc
Confidence 469999999988754 34455444 3 5699999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEeccCCCCCCCCCCCCCHHHHHHH-HHHHhcCCCCCCCCCCCCCChhhhhh
Q 031715 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQ-LKKEMAAPHNRKLVQPPEGPHHMDVY 150 (154)
Q Consensus 95 ~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~-i~~ll~~P~~~~~~~~~~~~~~~~~~ 150 (154)
|..+|.||++.++ +.|+|.+.+..|+.. |-.+|.-||+.+|+|-|||.+|++..
T Consensus 78 De~SGsVCLDViN--QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~ 132 (189)
T KOG0416|consen 78 DEASGSVCLDVIN--QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDP 132 (189)
T ss_pred hhccCccHHHHHh--hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCH
Confidence 9889999999997 999999999999886 66789999999999999999998753
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.6e-30 Score=191.70 Aligned_cols=130 Identities=21% Similarity=0.365 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCce
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCV 94 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv 94 (154)
.|.|.+|++.+..++++| +.+. +++.| +...++.|.||.||||++|.|+..+.+..+||..||+-.|.|+||||||
T Consensus 12 ik~~~kEl~~l~~~PPdG-IKV~-~NeeD--~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNV 87 (223)
T KOG0423|consen 12 IKQLAKELKSLDESPPDG-IKVV-VNEED--FTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNV 87 (223)
T ss_pred HHHHHHHHHhcccCCCCc-eEEe-cChHH--hHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCc
Confidence 678999999999999999 5555 46666 4588999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChhhhhhc
Q 031715 95 NHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHHMDVYA 151 (154)
Q Consensus 95 ~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~~~~~~ 151 (154)
-. +|.||.+.|. .+|+|.+.|..||+.|.++|-.|++++..|.+|+++..++|+
T Consensus 88 aa-NGEICVNtLK--kDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYd 141 (223)
T KOG0423|consen 88 AA-NGEICVNTLK--KDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYD 141 (223)
T ss_pred cc-Cceehhhhhh--cccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHH
Confidence 95 9999999997 999999999999999999999999999999999999998885
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.3e-26 Score=173.86 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCc
Q 031715 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (154)
Q Consensus 14 r~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (154)
..|||+||++.|.+++.+.+. +. +.++||. +||.+|.||++|||+||.|+.+|.||.+||++||.|+.+|| -.
T Consensus 6 a~kRl~keY~~l~k~Pv~~i~-A~-P~p~nIL--EWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP---NG 78 (244)
T KOG0894|consen 6 AVKRLQKEYRALCKDPVPYIV-AR-PNPNNIL--EWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITP---NG 78 (244)
T ss_pred HHHHHHHHHHHHHhCCchhhc-cC-CCcccee--eeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECC---CC
Confidence 479999999999999998843 33 5888865 99999999999999999999999999999999999999996 12
Q ss_pred eecCCCeEeccCCC-CCCCCCCCCCHHHHHHHHHHHhcC--CCCCC
Q 031715 94 VNHETGVVEPKKFG-LLVNWQREYTMEDILTQLKKEMAA--PHNRK 136 (154)
Q Consensus 94 v~~~~G~vcl~~l~-~~~~W~p~~~i~~vl~~i~~ll~~--P~~~~ 136 (154)
-+.-+-++|+++.+ ..+.|+|.+++.+||.++.++|.+ |...+
T Consensus 79 RFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~pTtGS 124 (244)
T KOG0894|consen 79 RFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSPTTGS 124 (244)
T ss_pred ceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCCccCc
Confidence 23236789999976 248999999999999999999986 44444
No 20
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.8e-24 Score=152.82 Aligned_cols=138 Identities=59% Similarity=1.031 Sum_probs=128.6
Q ss_pred ccccchHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecc
Q 031715 9 SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 88 (154)
Q Consensus 9 ~~~~pr~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~ 88 (154)
++++||+-||++|+.+-++...++.+++.+.+++|+.|..|..+|.||+.|+||+.+|.++|..-++||..||+|+|.++
T Consensus 1 ~~~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tk 80 (138)
T KOG0896|consen 1 MVKVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTK 80 (138)
T ss_pred CCccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEE
Confidence 36789999999999999999999999999988899989999999999999999999999999999999999999999999
Q ss_pred cccCceecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCChh
Q 031715 89 INMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGPHH 146 (154)
Q Consensus 89 i~HPnv~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~~~~~ 146 (154)
|.-+.|++++|.|.-..+.....|+-.++++.||..++.+|....+.+.+||+++++|
T Consensus 81 inm~gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~~~eN~kl~qp~eg~~~ 138 (138)
T KOG0896|consen 81 INMNGVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMMSKENRKLPQPPEGQCF 138 (138)
T ss_pred eeecccccCCCccCccccchhhcccccchhhHHHHhhhHHHHHHHhhcccCCCCCCcC
Confidence 9999999989988765555568999999999999999999999999999999998865
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1e-20 Score=147.58 Aligned_cols=114 Identities=25% Similarity=0.326 Sum_probs=95.3
Q ss_pred ccccchHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecc
Q 031715 9 SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 88 (154)
Q Consensus 9 ~~~~pr~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~ 88 (154)
+.+.|..|||++|.++|+ ++.+...+. +-++| |++|+.+|.||.+|-||||+|+.+|.||.+||++||.+..+|+
T Consensus 7 N~KnpaVkRlmkEa~El~-~Ptd~yha~--plEdN--lFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp 81 (314)
T KOG0428|consen 7 NLKNPAVKRLMKEAAELK-DPTDHYHAQ--PLEDN--LFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP 81 (314)
T ss_pred cccCHHHHHHHHHHHHhc-Cchhhhhhc--cchhc--eeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC
Confidence 456788999999999999 576663333 45677 5599999999999999999999999999999999999999985
Q ss_pred cccCceecCCCeEeccCCCC-CCCCCCCCCHHHHHHHHHHHhc
Q 031715 89 INMTCVNHETGVVEPKKFGL-LVNWQREYTMEDILTQLKKEMA 130 (154)
Q Consensus 89 i~HPnv~~~~G~vcl~~l~~-~~~W~p~~~i~~vl~~i~~ll~ 130 (154)
-.-+.-+-+||+++.+. .+.|.|+|+|.+.|+.|..+|-
T Consensus 82 ---NGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 82 ---NGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred ---CCceeeCceEEEEecCCCccccCcchhHHHHHHHHHcccc
Confidence 12232477899999762 3789999999999999999884
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=7.8e-19 Score=135.04 Aligned_cols=128 Identities=15% Similarity=0.284 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCC--CCCeEEEecccccC
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPE--KPPSVRFHSRINMT 92 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~--~pP~v~f~t~i~HP 92 (154)
...|+.|+..+.+++.+|++ +. |.-++-+ .|-+.|++ ..+.|.||+|+|+|.+|++||. ..|+|.|.+.++||
T Consensus 21 ey~llAEf~lV~~ekL~gIy-vi-PSyan~l--~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP 95 (258)
T KOG0429|consen 21 EYALLAEFVLVCREKLDGIY-VI-PSYANKL--LWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHP 95 (258)
T ss_pred HHHHHHHHHHHHhccCCceE-Ec-ccccccc--eEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeecccccc
Confidence 34688888888888999954 44 3445533 99999995 5569999999999999999995 89999999999999
Q ss_pred ceecCCCeEeccCCCCCCCCCCC-CCHHHHHHHHHHHhcCCCCCCC--CCCCCCChhhhh
Q 031715 93 CVNHETGVVEPKKFGLLVNWQRE-YTMEDILTQLKKEMAAPHNRKL--VQPPEGPHHMDV 149 (154)
Q Consensus 93 nv~~~~G~vcl~~l~~~~~W~p~-~~i~~vl~~i~~ll~~P~~~~~--~~~~~~~~~~~~ 149 (154)
+|++.++.+|++-. ...|+-. .+|+.||.++|.++.+|+.... .||||+.+|.+.
T Consensus 96 ~icp~skeLdl~ra--f~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~ 153 (258)
T KOG0429|consen 96 LICPKSKELDLNRA--FPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKH 153 (258)
T ss_pred ccCCCccceeHhhh--hhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHh
Confidence 99999999999874 4679776 7899999999999999997654 699999999864
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.5e-15 Score=137.37 Aligned_cols=111 Identities=17% Similarity=0.250 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecc--cccC
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR--INMT 92 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~--i~HP 92 (154)
.+..+.|.+-|..+.+.+ +.+.. .++-+ ....+.|.|+.||||.+|.|.|.|.||++||..||.+...+. .++|
T Consensus 853 ~~~~~~~~~~~~~~~~~~-~~vr~-~e~r~--d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~np 928 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSG-IFVRA-YEDRM--DLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNP 928 (1101)
T ss_pred HHHHHHHHHhhhccCCCc-eEEEe-chHHH--HHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCc
Confidence 445566667777777777 44544 45542 255889999999999999999999999999999999999875 4899
Q ss_pred ceecCCCeEeccCCCC-----CCCCCCCCCHHHHHHHHHHHhc
Q 031715 93 CVNHETGVVEPKKFGL-----LVNWQREYTMEDILTQLKKEMA 130 (154)
Q Consensus 93 nv~~~~G~vcl~~l~~-----~~~W~p~~~i~~vl~~i~~ll~ 130 (154)
|.| ++|+||+++|+. .+-|+|+.+|.+||.+||.++-
T Consensus 929 nly-~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l 970 (1101)
T KOG0895|consen 929 NLY-EDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVL 970 (1101)
T ss_pred ccc-cccceehhhhccccCCCccccCcchhHHHHHHHhhhhhc
Confidence 999 599999999973 3679999999999999999843
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.3e-14 Score=128.15 Aligned_cols=115 Identities=18% Similarity=0.287 Sum_probs=100.4
Q ss_pred cchHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecc---
Q 031715 12 VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR--- 88 (154)
Q Consensus 12 ~pr~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~--- 88 (154)
....+|+++|++.+.++.+.++ .+. +.+.. +...++.|.||.|+||++|+|.|.|.||..||..||.+.+.+.
T Consensus 281 ~~~skrv~ke~~llskdlpEgi-fvr-p~e~R--Md~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~ 356 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGI-FVR-PDEGR--MDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGV 356 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCc-ccc-ccccc--cceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccce
Confidence 3468899999999999999884 344 35555 5588999999999999999999999999999999999999987
Q ss_pred cccCceecCCCeEeccCCCC-----CCCCCCC-CCHHHHHHHHHHHhcC
Q 031715 89 INMTCVNHETGVVEPKKFGL-----LVNWQRE-YTMEDILTQLKKEMAA 131 (154)
Q Consensus 89 i~HPnv~~~~G~vcl~~l~~-----~~~W~p~-~~i~~vl~~i~~ll~~ 131 (154)
.+.||.| ++|+||+++|.. .+.|+|. -+|.++|..||.++.+
T Consensus 357 R~nPNlY-n~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 357 RLNPNLY-NDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred eecCCcc-cCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 4899999 599999999863 3679998 8999999999999875
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=2.6e-09 Score=74.81 Aligned_cols=67 Identities=18% Similarity=0.285 Sum_probs=57.3
Q ss_pred EEEEecCCCCCCCCCeEEEecccccCceecCCCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCC
Q 031715 67 QLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHN 134 (154)
Q Consensus 67 ~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~ 134 (154)
-+.+.|++|||+.||.++...|+..-..-.++|+||+.+|. .+.|+++++++.++++|..++.+-.-
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt-~qgwssay~Ve~vi~qiaatlVkG~~ 80 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT-KQGWSSAYEVERVIMQIAATLVKGGA 80 (122)
T ss_pred EeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc-cccccchhhHHHHHHHHHHHhhccce
Confidence 35678999999999999988876555444469999999996 89999999999999999999997553
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=98.43 E-value=5.3e-07 Score=65.48 Aligned_cols=67 Identities=22% Similarity=0.366 Sum_probs=59.9
Q ss_pred CCcEEEEEEecCCCCCCCCCeEEEeccc---ccCceecCCCeEec---cCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 031715 62 EGRIYQLKLFCDKDYPEKPPSVRFHSRI---NMTCVNHETGVVEP---KKFGLLVNWQREYTMEDILTQLKKEMAA 131 (154)
Q Consensus 62 egg~f~~~i~fp~~yP~~pP~v~f~t~i---~HPnv~~~~G~vcl---~~l~~~~~W~p~~~i~~vl~~i~~ll~~ 131 (154)
.|+.+.+.|.||++||..||.|....+- +=|||+. +|.+|+ ... .+.|.|.-.+.++|..++.+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~-~G~LCl~~~~~~--~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVES-DGKLCLLDEELV--LDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcC-CCeEEEecCCcc--cCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999888654 6899996 999999 553 58999999999999999999984
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=98.21 E-value=4.5e-06 Score=59.82 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=55.4
Q ss_pred eeEEEEEEECCCCCCCCCcEEE--EEEecCCCCCCCCCeEEEeccc-----ccCceecCCCeEeccCCCCCCCCCC-CCC
Q 031715 46 MRSWTGTIIGPHNTVHEGRIYQ--LKLFCDKDYPEKPPSVRFHSRI-----NMTCVNHETGVVEPKKFGLLVNWQR-EYT 117 (154)
Q Consensus 46 l~~w~~~i~Gp~~tpyegg~f~--~~i~fp~~yP~~pP~v~f~t~i-----~HPnv~~~~G~vcl~~l~~~~~W~p-~~~ 117 (154)
|....++|.- .|+|..|. +.|-+|.+||..||.+.....- -+.+||+ +|+|.+..| ++|++ ..+
T Consensus 32 LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~-~G~v~~pyL---~~W~~~~s~ 103 (121)
T PF05743_consen 32 LLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDS-NGRVYLPYL---QNWNPPSSN 103 (121)
T ss_dssp EEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-T-TSBB-SHHH---HT--TTTS-
T ss_pred EEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECC-CCCEeCchh---ccCCCCCCC
Confidence 5567777762 57788886 5566899999999999776542 2449996 999999987 79988 789
Q ss_pred HHHHHHHHHHHhcC
Q 031715 118 MEDILTQLKKEMAA 131 (154)
Q Consensus 118 i~~vl~~i~~ll~~ 131 (154)
|.+++..+++.|.+
T Consensus 104 L~~lv~~l~~~F~~ 117 (121)
T PF05743_consen 104 LVDLVQELQAVFSE 117 (121)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHhH
Confidence 99999999888763
No 28
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00031 Score=58.00 Aligned_cols=95 Identities=20% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEe--cCCCCCCCCCeEEEecc----c-ccCceecCCCeEec
Q 031715 31 DGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLF--CDKDYPEKPPSVRFHSR----I-NMTCVNHETGVVEP 103 (154)
Q Consensus 31 ~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~--fp~~yP~~pP~v~f~t~----i-~HPnv~~~~G~vcl 103 (154)
+..-++.+.|+..-.++...++|. .+|.|.+|.+-|. +.+.||..||.+..... | .|-|||+ +|.|.+
T Consensus 37 P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~-nG~V~L 111 (365)
T KOG2391|consen 37 PKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDP-NGKVYL 111 (365)
T ss_pred cccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCC-CCeEec
Confidence 443455555655432445566555 4788888876655 69999999999966542 1 4999996 999999
Q ss_pred cCCCCCCCCCC-CCCHHHHHHHHHHHhcCCC
Q 031715 104 KKFGLLVNWQR-EYTMEDILTQLKKEMAAPH 133 (154)
Q Consensus 104 ~~l~~~~~W~p-~~~i~~vl~~i~~ll~~P~ 133 (154)
..| ..|.+ +.+|..+++.+.+.|.++.
T Consensus 112 PYL---h~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 112 PYL---HNWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred hhh---ccCCCccchHHHHHHHHHHHhcCCC
Confidence 998 69986 5889999999999988644
No 29
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=97.15 E-value=0.00032 Score=51.35 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcE----------EEEEEecCCCCCCCCCeEE
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI----------YQLKLFCDKDYPEKPPSVR 84 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~----------f~~~i~fp~~yP~~pP~v~ 84 (154)
..||..|++.|-+-- .....+++ .|.-.=.-++||-|.|.+ |.+++++|..||..||.+.
T Consensus 26 ~~RLKEEy~aLI~Yv-----~~nK~~Dn-----dWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~ 95 (161)
T PF08694_consen 26 VQRLKEEYQALIKYV-----ENNKENDN-----DWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIA 95 (161)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHTT--------EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B
T ss_pred HHHHHHHHHHHHHHH-----HhcccccC-----CeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCccee
Confidence 579999998875400 00000111 222211224555554433 5566777999999999997
Q ss_pred Eeccc-ccCceecCCCeEeccCCCCCCCC---CCCCCHHHHH
Q 031715 85 FHSRI-NMTCVNHETGVVEPKKFGLLVNW---QREYTMEDIL 122 (154)
Q Consensus 85 f~t~i-~HPnv~~~~G~vcl~~l~~~~~W---~p~~~i~~vl 122 (154)
...-- --.-.+ .+|+||++.-- ..-| .|.+.|...|
T Consensus 96 lPeLdGKTaKMY-RGGkIClt~HF-kPLWakN~PkfGIaHal 135 (161)
T PF08694_consen 96 LPELDGKTAKMY-RGGKICLTDHF-KPLWAKNVPKFGIAHAL 135 (161)
T ss_dssp -GGGTTT-SSBC-CCCBB---TTH-HHHHHCTTTT--HHHHH
T ss_pred ccccCCchhhhh-cCceEeeeccc-chhhhhcCCchhHHHHH
Confidence 54210 123345 48999998731 2346 4667777654
No 30
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=95.65 E-value=0.31 Score=34.96 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=58.3
Q ss_pred eEEeecCCCCCceeEEEEEEEC--CCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCceecC-CCeE--eccCCC-
Q 031715 34 VSYGMDDGDDIYMRSWTGTIIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHE-TGVV--EPKKFG- 107 (154)
Q Consensus 34 ~~~~~~~~~~i~l~~w~~~i~G--p~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPnv~~~-~G~v--cl~~l~- 107 (154)
+.++.+.+... .|-+ |.| -+.+.|....-.+-|.+|..||..+|.+.+..|-. -.. +|.+ |-+...
T Consensus 14 ~~~E~v~eg~~---~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L----~~~~G~~iP~~~~~~~~ 85 (122)
T PF14462_consen 14 LRWETVTEGGR---RWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPL----KLADGGPIPNAAEVTQT 85 (122)
T ss_pred ceEEEEEeCCc---cEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCce----EccCCCcCCchhcchhh
Confidence 44555445442 5665 555 55667999999999999999999998887766422 111 2333 322221
Q ss_pred -----------CCCCCCCC-CCHHHHHHHHHHHhc
Q 031715 108 -----------LLVNWQRE-YTMEDILTQLKKEMA 130 (154)
Q Consensus 108 -----------~~~~W~p~-~~i~~vl~~i~~ll~ 130 (154)
....|+|. =+|.+.|..|...|.
T Consensus 86 ~~G~~wQrWSRH~~~W~P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 86 FDGRTWQRWSRHNNPWRPGVDDLWTHLARVEHALA 120 (122)
T ss_pred cCCeeeeeecCCCCCCCCCCCcHHHHHHHHHHHHh
Confidence 13678886 468888888888774
No 31
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=95.39 E-value=0.13 Score=38.64 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=50.1
Q ss_pred EEEecCCCCCCCCCeEEEecccc---cCceecCC-----CeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcC
Q 031715 68 LKLFCDKDYPEKPPSVRFHSRIN---MTCVNHET-----GVVEPKKFGLLVNWQREYTMEDILTQLKKEMAA 131 (154)
Q Consensus 68 ~~i~fp~~yP~~pP~v~f~t~i~---HPnv~~~~-----G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~ 131 (154)
+.|.|+.+||..+|.+.+....| +||+++ . ..+|+..-. ...|.+..+++.+|..|...|.+
T Consensus 57 ~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~-~~~~~p~~lCl~~~~-~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 57 VAIVFPPDSPLSAPEVPALRKDFPGNLPHQNP-GPEGEPVSLCLYEGP-WSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred EEEEecCCCCCCCccchhhHhhCCCCCCccCC-CCCCCCccceEecCC-HHHhhhccCHHHHHHHHHHHHHH
Confidence 56899999999999877766543 577775 5 788987653 57889999999999999999875
No 32
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.07 E-value=0.088 Score=35.90 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEEC--CCCCCCCCcEEEEEEecCCCCCCCCCeEEEeccc
Q 031715 17 RLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIG--PHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRI 89 (154)
Q Consensus 17 RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~G--p~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i 89 (154)
+.+.|+..|+.--.+. . ......++ ..+.+.+.+ ...+.-....+.+.+.||++||..+|.+......
T Consensus 5 ~~~~EieaL~sIy~~~-~-~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 5 QQEEEIEALQSIYPDD-F-IEIESKSP---PSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHSSSS-E-SSSTSSSS---EEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHcCCC-c-cccccCCC---CceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 5677888887633222 1 11112222 256666621 2333444568999999999999999999877653
No 33
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.75 E-value=0.04 Score=39.90 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcE----------EEEEEecCCCCCCCCCeEE
Q 031715 15 NFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRI----------YQLKLFCDKDYPEKPPSVR 84 (154)
Q Consensus 15 ~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~----------f~~~i~fp~~yP~~pP~v~ 84 (154)
..||..|++.|-.--.. ...+++ .|.-.-.-++||-|-|.+ |.+++.+|-.||...|.+.
T Consensus 29 vqrlkeey~sli~yvqn-----nk~~d~-----dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 29 VQRLKEEYQSLIAYVQN-----NKSNDN-----DWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred HHHHHHHHHHHHHHHHh-----CcccCC-----cceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 46899999888541100 001122 343333458888888854 4566677999999999986
Q ss_pred Eeccc-ccCceecCCCeEeccCCCCCCCCC---CCCCHHHH
Q 031715 85 FHSRI-NMTCVNHETGVVEPKKFGLLVNWQ---REYTMEDI 121 (154)
Q Consensus 85 f~t~i-~HPnv~~~~G~vcl~~l~~~~~W~---p~~~i~~v 121 (154)
...-- ----.+ .+|+||+..-- ..-|. |.+.|...
T Consensus 99 lpeldgktakmy-rggkiclt~hf-kplwarn~pkfgiaha 137 (167)
T KOG3357|consen 99 LPELDGKTAKMY-RGGKICLTDHF-KPLWARNVPKFGIAHA 137 (167)
T ss_pred ccccCchhhhhh-cCceEeecccc-chhhhhcCcchhHHHH
Confidence 43200 011234 38999997632 34574 45566554
No 34
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.04 E-value=0.38 Score=32.42 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCCCCCCCCeEEEecc
Q 031715 63 GRIYQLKLFCDKDYPEKPPSVRFHSR 88 (154)
Q Consensus 63 gg~f~~~i~fp~~yP~~pP~v~f~t~ 88 (154)
.-.+.+.+.||++||..+|.+.+...
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~ 65 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS 65 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC
Confidence 35688999999999999999988764
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=85.15 E-value=2 Score=35.23 Aligned_cols=86 Identities=23% Similarity=0.335 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHhHcCCCCCceEEeecCCCCCceeEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecccccCc
Q 031715 14 RNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTC 93 (154)
Q Consensus 14 r~~RL~~El~~l~~~~~~~~~~~~~~~~~~i~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~i~HPn 93 (154)
.-++|.+|+..+..+.. +.+.. + ++ +...++.+... .....++|.+|.+||.++|.+...-+
T Consensus 100 ~ys~ll~EIe~IGW~kl---~~i~~-d-~~--ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~~~~P----- 161 (291)
T PF09765_consen 100 YYSNLLKEIEAIGWDKL---VQIQF-D-DD--LSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCSLDLP----- 161 (291)
T ss_dssp GC-CHHHHHHHHHCGCC---EEEEE---CC--CSEEEEEEETT------CEEEEEEEETTTTTTTSEEEECS-TT-----
T ss_pred HHHHHHHHHHHhccccc---eEEec-C-CC--ccEEEEEEEcC------CceEEEEEEECCCCCCCCceeeCCCC-----
Confidence 46789999999988664 33432 2 33 44777777621 14678999999999999997532211
Q ss_pred eecCCCeEeccCCCCCCCCCC-CCCHHHHHHHHHHHh
Q 031715 94 VNHETGVVEPKKFGLLVNWQR-EYTMEDILTQLKKEM 129 (154)
Q Consensus 94 v~~~~G~vcl~~l~~~~~W~p-~~~i~~vl~~i~~ll 129 (154)
... ...|.+ ..++.+|+...+..|
T Consensus 162 ---------~~~---~~~w~~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 162 ---------IPF---SLSWSPSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp ---------S-H---HHHHHCHT-SHHHHHHHHHHHH
T ss_pred ---------cch---hhhhcccccCHHHHHHHHHHHH
Confidence 111 146877 678888887777664
No 36
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.72 E-value=11 Score=35.00 Aligned_cols=40 Identities=25% Similarity=0.494 Sum_probs=27.5
Q ss_pred EEEEEEECCCCCCCCCcEE-EEEEecCCCCCC-CCCeEEEecc
Q 031715 48 SWTGTIIGPHNTVHEGRIY-QLKLFCDKDYPE-KPPSVRFHSR 88 (154)
Q Consensus 48 ~w~~~i~Gp~~tpyegg~f-~~~i~fp~~yP~-~pP~v~f~t~ 88 (154)
.-.+.+.||---. .|-+| ++.|.||.+||. .+|++.|..+
T Consensus 450 sctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 450 SCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred eEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 4455666554332 34343 678999999998 7999999864
No 37
>smart00340 HALZ homeobox associated leucin zipper.
Probab=70.18 E-value=4.1 Score=23.76 Aligned_cols=16 Identities=25% Similarity=0.125 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHhHcCC
Q 031715 14 RNFRLLEELERGEKGI 29 (154)
Q Consensus 14 r~~RL~~El~~l~~~~ 29 (154)
.++||++|+++|..-.
T Consensus 20 eNrRL~ke~~eLralk 35 (44)
T smart00340 20 ENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4889999999997633
No 38
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=64.96 E-value=18 Score=30.26 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=46.3
Q ss_pred EEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEec-ccccCceecCCCeEeccCCCCCCCCCCC--CCHHHHHHH
Q 031715 48 SWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHS-RINMTCVNHETGVVEPKKFGLLVNWQRE--YTMEDILTQ 124 (154)
Q Consensus 48 ~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t-~i~HPnv~~~~G~vcl~~l~~~~~W~p~--~~i~~vl~~ 124 (154)
++++.| ||.|...+-+|.|...+|..||-+.|.. .-|+|... . +..| .+|... ..+..++..
T Consensus 55 RF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s----~--l~~L---~~Wd~~dp~~Ll~li~E 119 (333)
T PF06113_consen 55 RFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPS----K--LPSL---VNWDPSDPNCLLNLISE 119 (333)
T ss_pred eEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChh----h--cchh---hcCCCCCchHHHHHHHH
Confidence 566655 5888999999999999999999999973 33777322 1 2333 789776 445566665
Q ss_pred HHHH
Q 031715 125 LKKE 128 (154)
Q Consensus 125 i~~l 128 (154)
+...
T Consensus 120 L~~~ 123 (333)
T PF06113_consen 120 LRQL 123 (333)
T ss_pred HHHH
Confidence 5544
No 39
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=61.18 E-value=7.8 Score=30.42 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=18.5
Q ss_pred EEEEEEecCCCCCCCCCeEE
Q 031715 65 IYQLKLFCDKDYPEKPPSVR 84 (154)
Q Consensus 65 ~f~~~i~fp~~yP~~pP~v~ 84 (154)
.+.+.+.++.+||..+|-+.
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~ 69 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIE 69 (215)
T ss_pred cEEEEEEccCCCCCCCccee
Confidence 78899999999999999993
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=52.41 E-value=24 Score=25.69 Aligned_cols=25 Identities=24% Similarity=0.636 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCCCC-CCCCeEEEec
Q 031715 63 GRIYQLKLFCDKDYP-EKPPSVRFHS 87 (154)
Q Consensus 63 gg~f~~~i~fp~~yP-~~pP~v~f~t 87 (154)
.|.|.|.-.+|-.|| ..||.|.|.-
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 388999999999999 9999998864
No 41
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=49.47 E-value=27 Score=26.77 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=22.4
Q ss_pred cEEEEEEecCCCCCCCCCeEEEecc
Q 031715 64 RIYQLKLFCDKDYPEKPPSVRFHSR 88 (154)
Q Consensus 64 g~f~~~i~fp~~yP~~pP~v~f~t~ 88 (154)
|.|.|+=.+|--||..+|.|.|.-.
T Consensus 87 G~~~F~TI~PG~Y~gR~~HIH~~V~ 111 (188)
T cd03457 87 GVVTFTTIFPGWYPGRATHIHFKVH 111 (188)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEE
Confidence 7899999999999999999998753
No 42
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=41.87 E-value=43 Score=24.89 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.7
Q ss_pred cEEEEEEecCCCCC-----CCCCeEEEec
Q 031715 64 RIYQLKLFCDKDYP-----EKPPSVRFHS 87 (154)
Q Consensus 64 g~f~~~i~fp~~yP-----~~pP~v~f~t 87 (154)
|.|.|.-.+|--|| ..||.|.|.-
T Consensus 73 G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 73 GRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 78999999999999 8999998864
No 43
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=40.81 E-value=13 Score=24.52 Aligned_cols=18 Identities=22% Similarity=0.148 Sum_probs=13.4
Q ss_pred CccccchHHHHHHHHHHh
Q 031715 8 SSVVVPRNFRLLEELERG 25 (154)
Q Consensus 8 ~~~~~pr~~RL~~El~~l 25 (154)
.+.+.+-.||||+||+-|
T Consensus 54 ~ss~LSQLKRiQRdlrGL 71 (76)
T PF08203_consen 54 LSSVLSQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHhhCCC
Confidence 344455689999999877
No 44
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=40.53 E-value=9.1 Score=29.57 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=33.4
Q ss_pred CCeEeccCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Q 031715 98 TGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPE 142 (154)
Q Consensus 98 ~G~vcl~~l~~~~~W~p~~~i~~vl~~i~~ll~~P~~~~~~~~~~ 142 (154)
.+.+|+++|+ ..|+|.+|+++-+.-++.++.+-..+-+.|.+.
T Consensus 135 ~~~f~~sIlD--r~Y~pdmt~eea~~lmkKCv~El~kRlvin~~~ 177 (200)
T KOG0177|consen 135 GSYFCLSILD--RYYKPDMTIEEALDLMKKCVLELKKRLVINLPG 177 (200)
T ss_pred hhhhhHHHHH--hhhCCCCCHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 6789999997 899999999998888887766655455555443
No 45
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=37.45 E-value=11 Score=35.19 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=0.0
Q ss_pred EEEEEEecCCCCCCCCCeEEEecccc
Q 031715 65 IYQLKLFCDKDYPEKPPSVRFHSRIN 90 (154)
Q Consensus 65 ~f~~~i~fp~~yP~~pP~v~f~t~i~ 90 (154)
+=-+.|.+|.+||..+|.+.+.+.-|
T Consensus 715 VPPl~l~vP~~YP~~sp~~~~~~~~y 740 (799)
T PF09606_consen 715 VPPLRLTVPADYPRQSPQCSVDRDEY 740 (799)
T ss_dssp --------------------------
T ss_pred CCCeeEeCCCCCCccCCcCcccHHHh
Confidence 34478999999999999998866544
No 46
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=35.14 E-value=58 Score=27.35 Aligned_cols=25 Identities=16% Similarity=0.398 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCCCCCCCCeEEEec
Q 031715 63 GRIYQLKLFCDKDYPEKPPSVRFHS 87 (154)
Q Consensus 63 gg~f~~~i~fp~~yP~~pP~v~f~t 87 (154)
+-.|-+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 3457788999999999999999875
No 47
>PF03366 YEATS: YEATS family; InterPro: IPR005033 Named the YEATS family, after `YNK7', `ENL', `AF-9', and `TFIIF small subunit', this family also contains the GAS41 protein. All these proteins are thought to have a transcription stimulatory activity.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3QRL_A 2L7E_A 3FK3_C 3RLS_A.
Probab=34.71 E-value=1.4e+02 Score=19.75 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=26.3
Q ss_pred eEEEEEEECCCCCCCCCcEEEEEEecCCCCCCCCCeEEEecc
Q 031715 47 RSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSR 88 (154)
Q Consensus 47 ~~w~~~i~Gp~~tpyegg~f~~~i~fp~~yP~~pP~v~f~t~ 88 (154)
.+|.+-+.|+.+.--..-+=++.+.+.+.|+. |...+..+
T Consensus 2 h~W~v~Vr~~~~~d~~~~i~kV~f~LHpsF~~--p~r~v~~p 41 (84)
T PF03366_consen 2 HKWTVYVRGLDNEDLSYFIKKVTFKLHPSFPN--PVRVVTKP 41 (84)
T ss_dssp EEEEEEEEECCCT--TTTEEEEEEES-TTSSS---EEECSST
T ss_pred cEEEEEEEeCCCCCccceEEEEEEECCCCCCC--CceEecCC
Confidence 58999999988865455566788888888876 55444443
No 48
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=33.04 E-value=52 Score=27.44 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.5
Q ss_pred cEEEEEEecCCCCCCCCCeEEEecc
Q 031715 64 RIYQLKLFCDKDYPEKPPSVRFHSR 88 (154)
Q Consensus 64 g~f~~~i~fp~~yP~~pP~v~f~t~ 88 (154)
-.+.+.+..+..||.+.|+|+...|
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nP 69 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNP 69 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCC
Confidence 3577888899999999999998865
No 49
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=31.00 E-value=74 Score=24.48 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=20.6
Q ss_pred cEEEEEEecCCCCCC-----CCCeEEEec
Q 031715 64 RIYQLKLFCDKDYPE-----KPPSVRFHS 87 (154)
Q Consensus 64 g~f~~~i~fp~~yP~-----~pP~v~f~t 87 (154)
|.|.|.-..|-.||. .||.|.|.-
T Consensus 97 G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 97 GEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 789999999999998 888887753
No 50
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=28.42 E-value=55 Score=29.51 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEEecCCCCCC---CCCeEEEecc
Q 031715 59 TVHEGRIYQLKLFCDKDYPE---KPPSVRFHSR 88 (154)
Q Consensus 59 tpyegg~f~~~i~fp~~yP~---~pP~v~f~t~ 88 (154)
+||.=|.|-+ +.+|+.||+ +-|.++|+|+
T Consensus 248 GpY~WgryDl-lvlPpSFP~gGMENPcltF~Tp 279 (613)
T KOG1047|consen 248 GPYVWGRYDL-LVLPPSFPFGGMENPCLTFVTP 279 (613)
T ss_pred CCcccccceE-EEecCCCCcccccCcceeeecc
Confidence 4676677775 567999997 8999999997
No 51
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.40 E-value=89 Score=23.86 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=19.5
Q ss_pred cEEEEEEecCCCCCC-----CCCeEEEe
Q 031715 64 RIYQLKLFCDKDYPE-----KPPSVRFH 86 (154)
Q Consensus 64 g~f~~~i~fp~~yP~-----~pP~v~f~ 86 (154)
|.|.|.-.+|--||. .||.|.|.
T Consensus 93 G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~ 120 (185)
T cd03463 93 GRFSFTTVKPGAVPGRDGAGQAPHINVW 120 (185)
T ss_pred CCEEEEEEcCCCcCCCCCCCcCCeEEEE
Confidence 789999999999995 78877765
No 52
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=27.83 E-value=56 Score=22.65 Aligned_cols=20 Identities=25% Similarity=0.702 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCCCCCcEEEEE
Q 031715 48 SWTGTIIGPHNTVHEGRIYQLK 69 (154)
Q Consensus 48 ~w~~~i~Gp~~tpyegg~f~~~ 69 (154)
+|.|.+-|- ..|+|-.|+|.
T Consensus 2 kWkC~iCg~--~I~~gqlFTF~ 21 (101)
T PF09943_consen 2 KWKCYICGK--PIYEGQLFTFT 21 (101)
T ss_pred ceEEEecCC--eeeecceEEEe
Confidence 799999974 48999999873
No 53
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=26.00 E-value=1.1e+02 Score=24.28 Aligned_cols=37 Identities=8% Similarity=0.129 Sum_probs=23.6
Q ss_pred cccccC---ceecCCCeEeccCCCCCCCCCCC-CCHHHHHHHHHHHhc
Q 031715 87 SRINMT---CVNHETGVVEPKKFGLLVNWQRE-YTMEDILTQLKKEMA 130 (154)
Q Consensus 87 t~i~HP---nv~~~~G~vcl~~l~~~~~W~p~-~~i~~vl~~i~~ll~ 130 (154)
|++||. ||+. +|+||+... . .|. .++.+ +....+.|.
T Consensus 131 T~L~~aPffNV~~-~G~VC~G~~----~-~P~~~~~~~-i~~we~~FF 171 (228)
T TIGR03737 131 TKLYQAPLFNVWS-NGEICAGNA----R-LPDRPTVAN-ISAWEDAFF 171 (228)
T ss_pred CeeccCCcCccCC-CCeEeeCCC----c-CCCCcCHHH-HHHHHHHHh
Confidence 445554 8985 999999763 2 443 45666 666666543
No 54
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=25.28 E-value=1.1e+02 Score=20.66 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=21.6
Q ss_pred CCCcEEEEEEecCCCCCCCCCeEEEecc
Q 031715 61 HEGRIYQLKLFCDKDYPEKPPSVRFHSR 88 (154)
Q Consensus 61 yegg~f~~~i~fp~~yP~~pP~v~f~t~ 88 (154)
-||..+.|...-|..|| .|++.+.+.
T Consensus 16 ~eG~~~~L~C~pP~g~P--~P~i~W~~~ 41 (95)
T cd05845 16 EEGDSVVLPCNPPKSAV--PLRIYWMNS 41 (95)
T ss_pred ecCCCEEEEecCCCCCC--CCEEEEECC
Confidence 46778889999999999 599998865
No 55
>PF00845 Gemini_BL1: Geminivirus BL1 movement protein; InterPro: IPR000211 The movement of bipartite Geminiviruses such as squash leaf curl virus (SqLCV) requires the cooperative interaction of two essential virus-encoded movement proteins, BR1 and BL1. Recent studies of SqLCV and bean dwarf mosaic virus have shown that BR1 and BL1 act in a cooperative manner to move the viral genome intracellularly from the nucleus to the cytoplasm and across the wall cell to cell. BR1 is a nuclear shuttle protein, and it has been proposed to bind newly replicated viral ssDNA genomes and move these between the nucleus and cytoplasm. These BR1-genome complexes are then directed to the cell periphery through interactions between BR1 and BL1, where, as the result of BL1 action, the complexes are moved to adjacent uninfected cells. The precise mechanism by which BL1 acts to transport these genome complexes across the cell wall, and whether this may differ in different cell types, remains at issue [].; GO: 0003677 DNA binding, 0046740 spread of virus in host, cell to cell, 0033644 host cell membrane
Probab=22.88 E-value=1.7e+02 Score=23.70 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=30.3
Q ss_pred EEEEEEECCCCCCCCCc---EEEEEEecC-----CCCCCCCCeEEEecccc
Q 031715 48 SWTGTIIGPHNTVHEGR---IYQLKLFCD-----KDYPEKPPSVRFHSRIN 90 (154)
Q Consensus 48 ~w~~~i~Gp~~tpyegg---~f~~~i~fp-----~~yP~~pP~v~f~t~i~ 90 (154)
=|++.....+.-..+|- .|+.++.+. .+-||++|+|..+++-|
T Consensus 104 PWkl~YrV~DtNV~~~thFak~kgKLKLStAKHS~DI~Fr~PtikILSK~f 154 (276)
T PF00845_consen 104 PWKLYYRVEDTNVHQGTHFAKFKGKLKLSTAKHSVDIPFRAPTIKILSKQF 154 (276)
T ss_pred CeEEEEEeecCccccceeeeeeeceeeecccccccccccCCCceEeeeccc
Confidence 58887775555555553 345556653 78999999999998755
No 56
>KOG3203 consensus Mitochondrial/chloroplast ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=21.58 E-value=45 Score=24.95 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=10.7
Q ss_pred cccccCceecCCCeEec
Q 031715 87 SRINMTCVNHETGVVEP 103 (154)
Q Consensus 87 t~i~HPnv~~~~G~vcl 103 (154)
.|+|||+.|. |.+|.
T Consensus 49 KPiYhP~~Dc--GD~VV 63 (165)
T KOG3203|consen 49 KPIYHPSTDC--GDHVV 63 (165)
T ss_pred CCccCCccCC--CCEEE
Confidence 3789999994 55543
No 57
>PF04447 DUF550: Protein of unknown function (DUF550); InterPro: IPR007538 This entry represents the N terminus of a protein of unknown function, found in a range of Proteobacteria and a few P22-like dsDNA virus particles.
Probab=21.28 E-value=1.2e+02 Score=21.02 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=18.9
Q ss_pred cCCCCccccchHHHHHHHHHHhHcCCCCC
Q 031715 4 GSGGSSVVVPRNFRLLEELERGEKGIGDG 32 (154)
Q Consensus 4 ~~~~~~~~~pr~~RL~~El~~l~~~~~~~ 32 (154)
|.+...+.+ .++|.+|+.++..++.+.
T Consensus 15 Gp~~~p~g~--lkHl~kE~~E~~~~p~Dl 41 (100)
T PF04447_consen 15 GPGVGPVGP--LKHLSKEALEAEAAPGDL 41 (100)
T ss_pred CCCCCcchH--HHHHHHHHHHHHhCCCCH
Confidence 434444444 789999999999987543
No 58
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=20.65 E-value=1.4e+02 Score=24.45 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.7
Q ss_pred cEEEEEEecCCCCC------------------CCCCeEEEec
Q 031715 64 RIYQLKLFCDKDYP------------------EKPPSVRFHS 87 (154)
Q Consensus 64 g~f~~~i~fp~~yP------------------~~pP~v~f~t 87 (154)
|.|.|.-.+|.-|| ..||.|.|.-
T Consensus 181 G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~V 222 (285)
T TIGR02439 181 GRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFFV 222 (285)
T ss_pred CCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEEE
Confidence 88999999999997 6789988864
Done!