BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031716
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 28/140 (20%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S ++++ L + L ++++ F + ++ G+ + E++V +F
Sbjct: 61 LIFVSHGAGEHSG-----RYEE-LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 110
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACKE-----DIAASAVLCLGYP 131
H V V +PG P+ L G SMG ++ + A + + + L L P
Sbjct: 111 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANP 170
Query: 132 -----LKVCYYLCLSIMIPN 146
KV L++++PN
Sbjct: 171 ESATTFKVLAAKVLNLVLPN 190
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 28/140 (20%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S ++++ L + L ++++ F + ++ G+ + E++V +F
Sbjct: 62 LIFVSHGAGEHSG-----RYEE-LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 111
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACKE-----DIAASAVLCLGYP 131
H V V +PG P+ L G SMG ++ + A + + + L L P
Sbjct: 112 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANP 171
Query: 132 -----LKVCYYLCLSIMIPN 146
KV L++++PN
Sbjct: 172 ESATTFKVLAAKVLNLVLPN 191
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 25 VVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLV--EF 82
++ +HGAG S ++++ L + L ++++ F + ++ G+ + E++V +F
Sbjct: 44 LIFVSHGAGEHSG-----RYEE-LARMLMGLDLLVFAHDHVGHGQSEG----ERMVVSDF 93
Query: 83 HTDV------VKGAVAKFPGHPLILAGKSMGSRVSCMVACKE 118
H V V +PG P+ L G SMG ++ + A +
Sbjct: 94 HVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAER 135
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 13 KNECGDDT-------SSSPVVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYI 65
+NE G DT S PV++ HG G S+ W + ++ + +V D
Sbjct: 21 ENETGKDTFRVYKSGSEGPVLLLLHGGGH-SALSWAVFTAAIISRV--QCRIVALDLRSH 77
Query: 66 AGGKRKAPP--KAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMGSRVSCMVACKEDIAAS 123
K K P AE + + +VV+ P P++L G SMG ++ A + +
Sbjct: 78 GETKVKNPEDLSAETMAKDVGNVVEAMYGDLP-PPIMLIGHSMGGAIAVHTASSNLVPSL 136
Query: 124 AVLCL 128
LC+
Sbjct: 137 LGLCM 141
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 13 KNECGDDT-------SSSPVVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYI 65
+NE G DT S PV++ HG G S+ W + ++ + +V D
Sbjct: 25 ENETGKDTFRVYKSGSEGPVLLLLHGGGH-SALSWAVFTAAIISRV--QCRIVALDLRSH 81
Query: 66 AGGKRKAPP--KAEKLVEFHTDVVKGAVAKFPGHPLILAGKSMGSRVSCMVACKEDIAAS 123
K K P AE + + +VV+ P P++L G +MG ++ A + +
Sbjct: 82 GETKVKNPEDLSAETMAKDVGNVVEAMYGDLP-PPIMLIGHAMGGAIAVHTASSNLVPSL 140
Query: 124 AVLCL 128
LC+
Sbjct: 141 LGLCM 145
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 30.8 bits (68), Expect = 0.33, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 19/92 (20%)
Query: 20 TSSSPVVVFAHGAGAPSSSDWMIKWKDMLGKALDAVEVVTFDYPYIAGGKRKAPPKAEKL 79
T SSP V A S+D ++ +G L +F Y Y K + +
Sbjct: 266 TLSSPAV-----KEAVESADLVLS----VGALLSDFNTGSFSYSY----------KTKNI 306
Query: 80 VEFHTDVVKGAVAKFPGHPLILAGKSMGSRVS 111
VEFH+D K A FPG + A + + ++V+
Sbjct: 307 VEFHSDYTKIRSATFPGVQMKFALQKLLTKVA 338
>pdb|1VP8|A Chain A, Crystal Structure Of An AlphaBETA DOMAIN OF A PUTATIVE
PYRUVATE Kinase (Af0103) From Archaeoglobus Fulgidus Dsm
4304 At 1.30 A Resolution
Length = 201
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 44 WKDMLGKALDAVE-----VVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPGHP 98
+ D KAL+ E VVT+ ++ G+ PP+ E + ++ AK
Sbjct: 53 YGDTAXKALEXAEGLEVVVVTYHTGFVREGENTXPPEVE-------EELRKRGAKIVRQS 105
Query: 99 LILAGKSMG-SRVSCMVACKEDIAASAVLCLGYPLKVCYYLCL 140
IL+G SR V+ E IA + G+ LKVC + +
Sbjct: 106 HILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITI 148
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With The
Surrogate Pyruvamide
Length = 563
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant E477q In Complex With Its
Substrate
Length = 563
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae Pyruvate
Decarboxylase Variant D28a In Complex With Its Substrate
Length = 563
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 284 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 322
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed With
Pyruvamide
Length = 563
Score = 27.3 bits (59), Expect = 3.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 10/49 (20%)
Query: 48 LGKALDAVEVVTFDYPYIAGGKRKAPPKAEKLVEFHTDVVKGAVAKFPG 96
+G L +F Y Y K + +VEFH+D +K A FPG
Sbjct: 285 VGALLSDFNTGSFSYSY----------KTKNIVEFHSDHMKIRNATFPG 323
>pdb|3J21|D Chain D, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 255
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 63 PYIAGGKRKAPPKAEKLV 80
P+ GG+R PPK EK++
Sbjct: 84 PFARGGRRTHPPKVEKII 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,878,857
Number of Sequences: 62578
Number of extensions: 190270
Number of successful extensions: 443
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 14
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)