BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031717
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CZV|C Chain C, Crystal Structure Of Archeal Rnase P Protein Ph1481p In
Complex With Ph1877p
pdb|2CZV|D Chain D, Crystal Structure Of Archeal Rnase P Protein Ph1481p In
Complex With Ph1877p
Length = 120
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 5 KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
KNRY+ E+ D + T+ V + I S L GE G A + + +K+ +
Sbjct: 15 KNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAI-VKPWLIKF-D 62
Query: 65 PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAAL 116
P TK I+R+ RE + + A+ +V ++ L +SG+I+ K L
Sbjct: 63 PNTKTGIVRSDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFL 114
>pdb|2AV5|A Chain A, Crystal Structure Of Pyrococcus Furiosus Pop5, An Archaeal
Ribonuclease P Protein
pdb|2AV5|B Chain B, Crystal Structure Of Pyrococcus Furiosus Pop5, An Archaeal
Ribonuclease P Protein
pdb|2AV5|C Chain C, Crystal Structure Of Pyrococcus Furiosus Pop5, An Archaeal
Ribonuclease P Protein
pdb|2AV5|D Chain D, Crystal Structure Of Pyrococcus Furiosus Pop5, An Archaeal
Ribonuclease P Protein
pdb|2AV5|E Chain E, Crystal Structure Of Pyrococcus Furiosus Pop5, An Archaeal
Ribonuclease P Protein
Length = 120
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 31 QFN---VSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMT 87
QFN + +AI ++ L GE G A + + +K+ + T+ IIR+ R V ++T
Sbjct: 28 QFNKDEIKEAIWNACLRTLGELGTAKA-KPWLIKF-DETTQTGIIRSDRNHVYDVIFSLT 85
Query: 88 MVRSIGNCLVLFNVLDLSGSIRACKNAAL 116
+V I + VL +SG+I+ K L
Sbjct: 86 LVSDINGNKAIIKVLGVSGTIKRLKRKFL 114
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 1 MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASS 54
M+G K MV+E F + P++ +F +S R SILV G+ S
Sbjct: 13 MMGLKAHAMVLEKF---------NQPLVYKEFEISDIPRGSILVEILSAGVCGS 57
>pdb|3B9T|A Chain A, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|B Chain B, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|C Chain C, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
pdb|3B9T|D Chain D, Crystal Structure Of Predicted AcetamidaseFORMAMIDASE
(YP_546212.1) From Methylobacillus Flagellatus Kt At
1.58 A Resolution
Length = 484
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 21 LPVDDPVILTQFNVSKAIRDSILVNFGECGLA 52
+PVD I +NV K IR + +FG GLA
Sbjct: 266 VPVDHSTISKNYNVLKNIRVPVRPHFGTXGLA 297
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 ILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCI 71
+++ N + ++ ++L FG+ +AS++G+ + Y+N I LC+
Sbjct: 688 MISNPNARRELKPAVLSVFGD--IASNIGADFIPYLNDIMALCV 729
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 ILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCI 71
+++ N + ++ ++L FG+ +AS++G+ + Y+N I LC+
Sbjct: 688 MISNPNARRELKPAVLSVFGD--IASNIGADFIPYLNDIMALCV 729
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,072,852
Number of Sequences: 62578
Number of extensions: 136863
Number of successful extensions: 375
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 6
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)