BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031717
(154 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AWV1|POP5_ARATH Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis
thaliana GN=EMB1687 PE=2 SV=1
Length = 151
Score = 203 bits (517), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/155 (64%), Positives = 127/155 (81%), Gaps = 5/155 (3%)
Query: 1 MVGFKNRYMVVEVFLDPNKELPVDD-PVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
MVGFKNRYM++EVFLDP+K+L + P+ILTQFN+SKAI+DSILVNFGECGL SSLGSFQ
Sbjct: 1 MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60
Query: 60 VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKCE 119
VKYVNPITKLCI+R+SRE+ ++VW A+T+V+SIGNC V+ N+LD+SG IRAC++ ALKC+
Sbjct: 61 VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120
Query: 120 EVKFEHYKLAVGARLSADVTQHMENCLEKIKILEH 154
+ KFE LS + + M LEKIK+LE+
Sbjct: 121 KEKFEQ----CSKSLSEEEIRQMNTSLEKIKLLEN 151
>sp|Q9UU90|POP5_SCHPO Ribonucleases P/MRP protein subunit POP5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC830.09c PE=3 SV=1
Length = 139
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 1 MVGFKNRYMVVEVFLDPNKELPVDDPVI-----LTQFNVSKAIRDSILVNFGECGLASSL 55
MV FK+RY++ EV KE D P I +T ++SK IR + NFG+ G+
Sbjct: 1 MVRFKSRYLLFEVLYPEAKEF-FDYPTIPSDSSITTSSLSKIIRTMVAENFGDVGIGKVA 59
Query: 56 GSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAA 115
S VKY +P T I+R SR+ + W+A+ ++R + V+ V+ +SG+I+ + AA
Sbjct: 60 SSLTVKYFSPNTSTGILRVSRQHFRLAWAALVLIRELYGKPVIIRVVRVSGTIKKAELAA 119
Query: 116 LK 117
++
Sbjct: 120 IE 121
>sp|Q54EP3|POP5_DICDI Probable ribonuclease P/MRP protein subunit POP5 OS=Dictyostelium
discoideum GN=pop5 PE=3 SV=1
Length = 171
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 1 MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQV 60
MV KNRY++ EV N++ L QF +S +++ + GE + + ++
Sbjct: 1 MVRLKNRYLMTEVIWHDNEKSTQLSDSWLFQF-ISNEVKEKL----GELTYEAFKKTLKI 55
Query: 61 KYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALKC 118
YVNP T + IIR S E + +W+A+T++ S + F ++ + GSIR C+ AA+K
Sbjct: 56 IYVNPDTNIFIIRVSFEYYKSLWTALTLITSYYGVPIYFRMVHVGGSIRLCQKAAIKI 113
>sp|Q969H6|POP5_HUMAN Ribonuclease P/MRP protein subunit POP5 OS=Homo sapiens GN=POP5
PE=1 SV=1
Length = 163
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Query: 1 MVGFKNRYMVVE-VFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
MV FK+RY++ E V DP L +DD V+ S +RD+I G G A+ F
Sbjct: 1 MVRFKHRYLLCELVSDDPRCRLSLDDRVL------SSLVRDTIARVHGTFGAAACSIGFA 54
Query: 60 VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRACK 112
V+Y+N T + ++R +E Q VWSA+ + + N C FN L + G+IR C+
Sbjct: 55 VRYLNAYTGIVLLRCRKEFYQLVWSALPFITYLENKGHRYPC--FFNTLHVGGTIRTCQ 111
>sp|Q1JQ92|POP5_BOVIN Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2
SV=1
Length = 170
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 15/119 (12%)
Query: 1 MVGFKNRYMVVEVFLD-PNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
MV FK+RY++ EV D P L ++D V+ T +RD+I G G A+ F
Sbjct: 1 MVRFKHRYLLCEVVSDDPRCRLTLEDRVLGT------LVRDTIARVHGTFGAAACSIGFA 54
Query: 60 VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN------CLVLFNVLDLSGSIRACK 112
V+Y+N T + ++R +E + VWSA+ + S+ N C + N L + G+IR C+
Sbjct: 55 VRYLNAYTGIVLLRCRKEFYRLVWSALPFITSLENKGHRYPCFL--NTLHVGGTIRTCQ 111
>sp|Q9DB28|POP5_MOUSE Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5
PE=2 SV=1
Length = 169
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 1 MVGFKNRYMVVE-VFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQ 59
MV FK+RY++ E V D L +DD V+ +RD+I G G A+ F
Sbjct: 1 MVRFKHRYLLCELVSEDARCRLSLDDRVL------GGLVRDTIARVHGAFGAAACSVGFA 54
Query: 60 VKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN----CLVLFNVLDLSGSIRACK 112
V+Y+N T + ++R ++ Q VWSA+ + + N FN L + G+IR C+
Sbjct: 55 VRYLNAYTGVVLLRCRKDFYQLVWSALPFITYLENKGHRYPCFFNTLHVGGTIRTCQ 111
>sp|P28005|POP5_YEAST Ribonucleases P/MRP protein subunit POP5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=POP5 PE=1
SV=1
Length = 173
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 65/132 (49%), Gaps = 15/132 (11%)
Query: 1 MVGFKNRYMVVEVFLDP---NKELPVDDP-VILTQFNVSKA----------IRDSILVNF 46
MV K+RY++ E+ P N E V ++L+ S A IR S+ +N
Sbjct: 1 MVRLKSRYILFEIIFPPTDTNVEESVSKADILLSHHRASPADVSIKSILQEIRRSLSLNL 60
Query: 47 GECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGNCL-VLFNVLDLS 105
G+ G A Q+KY + T IIR REDC V A+ ++ IG+ ++ N + +S
Sbjct: 61 GDYGSAKCNSLLQLKYFSNKTSTGIIRCHREDCDLVIMALMLMSKIGDVDGLIVNPVKVS 120
Query: 106 GSIRACKNAALK 117
G+I+ + A++
Sbjct: 121 GTIKKIEQFAMR 132
>sp|Q5BJI6|POP5_DANRE Ribonuclease P/MRP protein subunit POP5 OS=Danio rerio GN=pop5 PE=2
SV=1
Length = 169
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 19/127 (14%)
Query: 1 MVGFKNRYMVVEVFLDPNKELPVDDPVILTQFN---VSKAIRDSILVNFGECGLAS---S 54
MV FK+RY++ E L V +P L F V +A+R ++ G+ G A +
Sbjct: 1 MVRFKSRYLLCE--------LCVSEPSSLHLFEDKVVYQALRGAVNRAHGDYGAAIFNIT 52
Query: 55 LGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSIGN----CLVLFNVLDLSGSIRA 110
LG VKY+N T + +IR + + VWS++ + + N FN + + G+IR
Sbjct: 53 LGVL-VKYLNAHTGVVLIRCRKAHYRLVWSSLPFITFLENRGQKVRCFFNCIHVGGTIRT 111
Query: 111 CKNAALK 117
+ +K
Sbjct: 112 SQKFLIK 118
>sp|O29761|RNP2_ARCFU Ribonuclease P protein component 2 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rnp2 PE=3 SV=2
Length = 109
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 33 NVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSI 92
++S+A+ + +L FGEC AS L +++ + + I+R RE KV A+T++ +
Sbjct: 29 SLSRALSEKMLSLFGECFAASGL---RLEAFD--GERGIVRCYREALDKVMVALTLMTHV 83
Query: 93 GNCLVLFNVLDLSGSIRACKNAALK 117
G V+ L +SG+I+ CK L+
Sbjct: 84 GGVRVIPLTLGVSGTIKRCKRKYLE 108
>sp|Q5JJ62|RNP2_PYRKO Ribonuclease P protein component 2 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rnp2 PE=3
SV=1
Length = 120
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Query: 5 KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
KNRY+ +V E P + + KA+ ++ L G G A + F +K+ +
Sbjct: 15 KNRYIAFQVI----GERP------FKKDEIKKAVWEASLSALGYLGSARAKPWF-IKF-D 62
Query: 65 PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAAL 116
++ I+R R+ +++ A+TM+ I V+F L +SG+I+ K L
Sbjct: 63 EKSQTGIVRVDRKHVEELRFALTMLTEINGSKVIFRTLGVSGTIKRLKRKFL 114
>sp|Q9V0V4|RNP2_PYRAB Ribonuclease P protein component 2 OS=Pyrococcus abyssi (strain GE5
/ Orsay) GN=rnp2 PE=3 SV=2
Length = 118
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 5 KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
KNRY+ E+ D T+ V I ++ L GE G A + F +KY +
Sbjct: 13 KNRYIAFEIISDDE----------FTKDEVKSLIWEASLRVLGELGTALAKPWF-IKY-D 60
Query: 65 PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAAL 116
P TK I+R RE + + A+ + ++ L +SG+I+ K L
Sbjct: 61 PKTKTGIVRCDREYVEHLRFALMLATDFNGKRLIIRTLGVSGTIKRLKKKFL 112
>sp|C6A460|RNP2_THESM Ribonuclease P protein component 2 OS=Thermococcus sibiricus
(strain MM 739 / DSM 12597) GN=rnp2 PE=3 SV=1
Length = 120
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Query: 5 KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
KNRY+ +V E P +I KAI D L GE G A + F +K+ +
Sbjct: 15 KNRYIAFQV----TGERPFKKEMI------KKAIWDVSLKTLGELGTARAKPWF-IKF-D 62
Query: 65 PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAALK 117
T+ I+R R+ +++ +T++ I + L +SG+I+ K LK
Sbjct: 63 EKTQTGIVRCDRKYVEEIRFVLTLITEINGSKAIVRTLGVSGTIKRLKMKFLK 115
>sp|O59150|RNP2_PYRHO Ribonuclease P protein component 2 OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rnp2 PE=1 SV=1
Length = 120
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 12/112 (10%)
Query: 5 KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
KNRY+ E+ D + T+ V + I S L GE G A + + +K+ +
Sbjct: 15 KNRYIAFEIISDGD----------FTKDEVKELIWKSSLEVLGETGTAI-VKPWLIKF-D 62
Query: 65 PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAAL 116
P TK I+R RE + + A+ +V ++ L +SG+I+ K L
Sbjct: 63 PNTKTGIVRCDREYVEYLRFALMLVSEFNGKRLIIRTLGVSGTIKRLKRKFL 114
>sp|B6YV61|RNP2_THEON Ribonuclease P protein component 2 OS=Thermococcus onnurineus
(strain NA1) GN=rnp2 PE=3 SV=1
Length = 120
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 12/112 (10%)
Query: 5 KNRYMVVEVFLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSFQVKYVN 64
K+RY+ +V + T+ + +AI ++ L G G A + F +K+ N
Sbjct: 15 KHRYIAFQVIGERT----------FTKDEIKRAIWEASLSTLGTLGSARAKPWF-IKF-N 62
Query: 65 PITKLCIIRASREDCQKVWSAMTMVRSIGNCLVLFNVLDLSGSIRACKNAAL 116
++ I+R R+ +++ A+ +V I +F L +SG+I+ K L
Sbjct: 63 EKSQTGIVRVDRKHVEELRFALALVTHINGSKAIFRTLGVSGTIKRLKRKFL 114
>sp|C5A4D6|RNP2_THEGJ Ribonuclease P protein component 2 OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rnp2 PE=3 SV=1
Length = 120
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 33 NVSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMTMVRSI 92
V KAI ++ L G G A + F +++ + ++ I+R R+ +++ A+T+V I
Sbjct: 33 EVKKAIWEASLSTLGVLGSAKAKPWF-IRF-DEKSQTGIVRVDRKHVEELRFALTLVTEI 90
Query: 93 GNCLVLFNVLDLSGSIRACKNAAL 116
+F L +SG+I+ K L
Sbjct: 91 NGSKAIFRTLGVSGTIKRLKRKFL 114
>sp|Q8U151|RNP2_PYRFU Ribonuclease P protein component 2 OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rnp2 PE=1
SV=1
Length = 120
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 31 QFN---VSKAIRDSILVNFGECGLASSLGSFQVKYVNPITKLCIIRASREDCQKVWSAMT 87
QFN + +AI ++ L GE G A + + +K+ + T+ IIR R V ++T
Sbjct: 28 QFNKDEIKEAIWNACLRTLGELGTAKA-KPWLIKF-DETTQTGIIRCDRNHVYDVIFSLT 85
Query: 88 MVRSIGNCLVLFNVLDLSGSIRACKNAAL 116
+V I + VL +SG+I+ K L
Sbjct: 86 LVSDINGNKAIIKVLGVSGTIKRLKRKFL 114
>sp|Q54RE1|TGRI3_DICDI Tiger protein I3 OS=Dictyostelium discoideum GN=tgrI3 PE=4 SV=2
Length = 852
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 13/77 (16%)
Query: 4 FKNRYMVVEV-----FLDPNKELPVDDPVILTQFNVSKAIRDSILVNFGECGLASSLGSF 58
F N+ + V V +DPN + VD +I +FN S V G C SS F
Sbjct: 226 FYNQSIFVSVKIDNNIIDPNDIISVDFEIIKLKFNYSDPFSSKFNVQVGCCDYWSS--QF 283
Query: 59 QVKY------VNPITKL 69
Q+ Y VN I KL
Sbjct: 284 QITYPPIPSIVNSIPKL 300
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,378,519
Number of Sequences: 539616
Number of extensions: 1763594
Number of successful extensions: 4931
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4911
Number of HSP's gapped (non-prelim): 20
length of query: 154
length of database: 191,569,459
effective HSP length: 107
effective length of query: 47
effective length of database: 133,830,547
effective search space: 6290035709
effective search space used: 6290035709
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)