BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 031718
(154 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|B Chain B, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|C Chain C, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|D Chain D, Crystal Structure Of Pf-Pcp(1-204)-C
Length = 213
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++CNYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++CNYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLCNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++ NYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|B Chain B, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|C Chain C, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|D Chain D, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
Length = 208
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++ NYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++ NYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++ NYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++ NYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++ NYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P IHVG+ G S ++ER AVN PD G + + P+V G + +
Sbjct: 57 EEIKPDIAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIV---PGAPTAYFS 113
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
+L + I+K L ++G IS+ AG ++ NYV Y SL + KG+ + F+HVP
Sbjct: 114 TLPIKKIMKKLHERGIPAYISNSAGLYLSNYVMYLSLHHSATKGYPKMSGFIHVP 168
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
pdb|1IU8|B Chain B, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
Length = 206
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 21 PQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLST 80
P I++G+ G + ++ER AVN PD G QP+ P+V +GG + T + T
Sbjct: 58 PDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIV--EGGPAAYFAT-IPT 114
Query: 81 EAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL--FVHVP 129
I++ +KK G V+S AG ++CN+ Y +L + KG+ + F+HVP
Sbjct: 115 REIVEEMKKNGIPAVLSYTAGTYLCNFAMYLTLHTSATKGYPKIAGFIHVP 165
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|B Chain B, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|C Chain C, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|D Chain D, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
Length = 220
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
+ P+ I++G+ S +ER AVN PD G+QP + ED ++
Sbjct: 58 EEIKPEIVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQPID-EKIEEDAPLAY--MA 114
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVP 129
+L AI K L+ G IS AG ++CNYV + +L F++ +G+ K+ F+HVP
Sbjct: 115 TLPVRAITKTLRDNGIPATISYSAGTYLCNYVMFKTLHFSKIEGYPLKAGFIHVP 169
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
Length = 228
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 18 RLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTS 77
+ P+ I VG G + +ER A+N PD G QP PV+++ SR
Sbjct: 81 KYQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSR--- 137
Query: 78 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVP 129
L + ++ L G +S AG FVCN+V Y L + Q + F+HVP
Sbjct: 138 LPIKTMVNALNTAGIPASVSQTAGTFVCNHVMYGLLHYLAQNTPSVRGGFIHVP 191
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
Length = 216
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 18 RLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTS 77
+ P+ I VG G + +ER A+N PD G QP PV+++ SR
Sbjct: 60 KYQPELVISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGPAAYFSR--- 116
Query: 78 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGH--KSLFVHVPLF 131
L + + L G +S AG FVCN+V Y L + Q + F+HVP
Sbjct: 117 LPIKTXVNALNTAGIPASVSQTAGTFVCNHVXYGLLHYLAQNTPSVRGGFIHVPYL 172
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
pdb|3LAC|B Chain B, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
Length = 215
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
Query: 18 RLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTS 77
LAP+ I +G G +ER A+N D G QP +PVV E+G + ++
Sbjct: 59 ELAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVV-EEG--PAAYWST 115
Query: 78 LSTEAILKFLKKKGFDVVISDDAGRFVCNYVYY---HSLRFAEQKGHKSLFVHVPLF 131
L +AI+K L+++G +S AG FV N+++Y H L + K K F+H+P
Sbjct: 116 LPXKAIVKKLQEEGIPASVSQTAGTFVXNHLFYGLXHELEKHDTK-XKGGFIHIPFL 171
>pdb|3RNZ|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RNZ|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I
pdb|3RO0|A Chain A, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|B Chain B, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|C Chain C, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
pdb|3RO0|D Chain D, Crystal Structure Of Bacillus Amyloliquefaciens
Pyroglutamyl Peptidase I And Terpyridine Platinum(Ii)
Length = 223
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 21 PQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED--GGISRSRQTSL 78
P I VG G + ER A+N PD G QP V ED G + T L
Sbjct: 63 PDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQP-----VGEDISQGGPAAYWTGL 117
Query: 79 STEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL-RFAEQKGH-KSLFVHVP 129
+ I++ +KK+G +S AG FVCN+++Y + + H + F+H+P
Sbjct: 118 PIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIP 170
>pdb|1AUG|A Chain A, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|B Chain B, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|C Chain C, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
pdb|1AUG|D Chain D, Crystal Structure Of The Pyroglutamyl Peptidase I From
Bacillus Amyloliquefaciens
Length = 215
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 21 PQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLED--GGISRSRQTSL 78
P I VG G + ER A+N PD G QP V ED G + T L
Sbjct: 63 PDIIICVGQAGGRMQITPERVAINLNEARIPDNEGNQP-----VGEDISQGGPAAYWTGL 117
Query: 79 STEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL-RFAEQKGH-KSLFVHVP 129
+ I++ +KK+G +S AG FVCN+++Y + + H + F+H+P
Sbjct: 118 PIKRIVEEIKKEGIPAAVSYTAGTFVCNHLFYGLMDEISRHHPHIRGGFIHIP 170
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
pdb|2EBJ|B Chain B, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
Length = 192
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQT 76
HR P+ +H+G+ LER AVN F PD G + +P+V G +
Sbjct: 54 HREGPKAVLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIV---PGGPLALPA 110
Query: 77 SLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL-RFAEQKGHKSLFVHVPLFSTID 135
+ +L ++ G S AG ++CN +Y SL R E+ F+H+P T+
Sbjct: 111 RFPVKPVLARWREAGIPGRPSLSAGSYLCNQAFYLSLYRLPEEVPVG--FLHLPPDETLA 168
Query: 136 EDTQMQFVATLFEAVA 151
+V +A A
Sbjct: 169 LKRPRPYVPLEVQARA 184
>pdb|3GIU|A Chain A, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
pdb|3GIU|B Chain B, 1.25 Angstrom Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase (Pcp) From Staphylococcus Aureus
Length = 215
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 27 VGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKF 86
+G G + ER A+N PD +QP + L DG + + ++L +A +
Sbjct: 69 IGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHL-DG--APAYFSNLPVKAXTQS 125
Query: 87 LKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHKSL---FVHVP 129
+ +G +S+ AG FVCN+ YH L + + K + L F+HVP
Sbjct: 126 IINQGLPGALSNSAGTFVCNHTLYH-LGYLQDKHYPHLRFGFIHVP 170
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 21 PQCEIHVGVNSGSSKFALER---RAVNEATFL-----------CPDQLG-WQPQQ-IPVV 64
P + VGVN G +L + R NE T + DQL W + +V
Sbjct: 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 216
Query: 65 LEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL 113
+ +G +++ ++ ++A+ K K++G+DVV+ D +GR NY L
Sbjct: 217 VAEG--DKAKAATVLSKAV-KRGKEEGYDVVLCDTSGRLHTNYSLMEEL 262
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 19/109 (17%)
Query: 21 PQCEIHVGVNSGSSKFALER---RAVNEATFL-----------CPDQLG-WQPQQ-IPVV 64
P + VGVN G +L + R NE T + DQL W + +V
Sbjct: 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 159
Query: 65 LEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSL 113
+ +G +++ ++ ++A+ K K++G+DVV+ D +GR NY L
Sbjct: 160 VAEG--DKAKAATVLSKAV-KRGKEEGYDVVLCDTSGRLHTNYSLMEEL 205
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 30.0 bits (66), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 24 EIHVGVNSGSSKFALERR---------AVNEATF--LCPDQLGWQPQQIPVVLED 67
EI VGV+ S +L + AVN + + LCP G++P I V+LED
Sbjct: 67 EIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILED 121
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 24 EIHVGVNSGSSKFALERR---------AVNEATF--LCPDQLGWQPQQIPVVLED 67
EI VGV+ S +L + AVN + + LCP G++P I V+LED
Sbjct: 67 EIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPNPITVILED 121
>pdb|2I71|A Chain A, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
pdb|2I71|B Chain B, Crystal Structure Of A Conserved Protein Of Unknown
Function From Sulfolobus Solfataricus P2
Length = 400
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 107 YVYYHSLRFAEQKGHKSLFV 126
Y+YYHSLR E++G +F+
Sbjct: 126 YIYYHSLRILEKEGINEVFI 145
>pdb|2ZSK|A Chain A, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
pdb|2ZSK|B Chain B, Crystal Structure Of Ph1733, An Aspartate Racemase
Homologue, From Pyrococcus Horikoshii Ot3
Length = 226
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 75 QTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHK 122
+T+++ + +K L++KG +VV+ +D + N + + L F K +
Sbjct: 124 KTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNLKNKE 171
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 63 VVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHSLRFAEQKGHK 122
+V+ +G + R ++ ++A+ + +++ FDVV+ D +GR NY LR ++ K
Sbjct: 174 IVMAEG--PKPRPAAVLSQAVRRAVEED-FDVVLCDTSGRLHTNYNLMEELRGCKRAVSK 230
Query: 123 SL 124
+L
Sbjct: 231 AL 232
>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|B Chain B, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|C Chain C, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
Length = 214
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 26 HVGVNSGSSKFALERRAVNEATFLCPDQLGW 56
H G N ++ L+RRA+ E F P++ W
Sbjct: 53 HFGANXIAADGTLQRRALRERIFANPEEKNW 83
>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|B Chain B, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|C Chain C, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
Length = 216
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 26 HVGVNSGSSKFALERRAVNEATFLCPDQLGW 56
H G N ++ L+RRA+ E F P++ W
Sbjct: 53 HFGANXIAADGTLQRRALRERIFANPEEKNW 83
>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHT|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VIY|A Chain A, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|B Chain B, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|C Chain C, Crystal Structure Of Dephospho-Coa Kinase
Length = 218
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 26 HVGVNSGSSKFALERRAVNEATFLCPDQLGW 56
H G N ++ L+RRA+ E F P++ W
Sbjct: 55 HFGANMIAADGTLQRRALRERIFANPEEKNW 85
>pdb|1MIO|B Chain B, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
pdb|1MIO|D Chain D, X-Ray Crystal Structure Of The Nitrogenase Molybdenum-Iron
Protein From Clostridium Pasteurianum At 3.0 Angstroms
Resolution
Length = 458
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 34 SKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEA----ILKFLKK 89
SKF +E A+ + + +Q ++I +L + GI S+ + E + +++K
Sbjct: 328 SKFIIELGAIPKYVVTGTPGMKFQ-KEIDAMLAEAGIEGSK---VKVEGDFFDVHQWIKN 383
Query: 90 KGFDVVISDDAGRFVCNYVYYHSLRFA 116
+G D++IS+ G+F+ +RF
Sbjct: 384 EGVDLLISNTYGKFIAREENIPFVRFG 410
>pdb|2PGN|A Chain A, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGN|B Chain B, The Crystal Structure Of Fad And Thdp-Dependent
Cyclohexane-1,2-Dione Hydrolase In Complex With
Cyclohexane-1,2-Dione
pdb|2PGO|A Chain A, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
pdb|2PGO|B Chain B, The Crystal Structure Of Fad And Thdp Dependent
Cyclohexane-1,2-Dione Hydrolase (Cdh) From Azoarcus Sp.
Strain 22lin
Length = 589
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 62 PVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV-ISDDAGRF 103
PV+L GG++RS +EA+LK + G VV S AG F
Sbjct: 208 PVILAGGGVARSG----GSEALLKLAEMVGVPVVTTSTGAGVF 246
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 52 DQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV---ISDDAGRFVC 105
D+ W + ++ G + + +L+ +A+L+F ++ G DVV + GRFVC
Sbjct: 140 DESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVC 196
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 53 QLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVISDDAGRFVCNYVYYHS 112
LGW+ + VV G RQ L+ L+KKG DVV D G YH+
Sbjct: 263 SLGWR---VMVVGCHGDPMIDRQMELAER-----LEKKGVDVVAQFDVGG-------YHA 307
Query: 113 LRFAEQKGHKSLFV 126
++ + + K FV
Sbjct: 308 VKLEDPEKAKQFFV 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,862,650
Number of Sequences: 62578
Number of extensions: 139384
Number of successful extensions: 404
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 32
length of query: 154
length of database: 14,973,337
effective HSP length: 90
effective length of query: 64
effective length of database: 9,341,317
effective search space: 597844288
effective search space used: 597844288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)