Query 031718
Match_columns 154
No_of_seqs 106 out of 713
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:23:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031718.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031718hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01470 Peptidase_C15: Pyrogl 100.0 2.2E-40 4.7E-45 262.4 10.7 135 16-153 56-202 (202)
2 PRK13194 pyrrolidone-carboxyla 100.0 5.5E-39 1.2E-43 255.6 15.3 135 16-153 56-206 (208)
3 PRK13193 pyrrolidone-carboxyla 100.0 1.7E-38 3.6E-43 253.0 14.8 134 16-152 56-200 (209)
4 PRK13196 pyrrolidone-carboxyla 100.0 5.4E-38 1.2E-42 250.4 15.2 136 16-154 57-211 (211)
5 PRK13195 pyrrolidone-carboxyla 100.0 4.8E-38 1E-42 252.0 14.1 134 16-152 57-207 (222)
6 PRK13197 pyrrolidone-carboxyla 100.0 1.1E-37 2.4E-42 249.2 14.6 134 17-153 58-203 (215)
7 TIGR00504 pyro_pdase pyrogluta 100.0 4.1E-37 9E-42 245.5 14.9 134 16-152 54-199 (212)
8 cd00501 Peptidase_C15 Pyroglut 100.0 2.5E-35 5.4E-40 231.5 10.7 117 16-135 56-174 (194)
9 COG2039 Pcp Pyrrolidone-carbox 100.0 4.7E-35 1E-39 228.1 11.6 134 16-152 56-201 (207)
10 KOG4755 Predicted pyroglutamyl 99.9 1.1E-23 2.3E-28 167.1 11.2 125 22-154 79-213 (213)
11 PF06162 DUF976: Caenorhabditi 99.3 5.4E-12 1.2E-16 96.6 7.2 79 18-99 79-166 (166)
12 PRK10667 Hha toxicity attenuat 60.8 10 0.00022 27.9 2.9 43 102-152 15-57 (122)
13 PF01261 AP_endonuc_2: Xylose 59.8 69 0.0015 23.7 8.1 74 79-152 28-119 (213)
14 PF02662 FlpD: Methyl-viologen 59.1 15 0.00032 26.8 3.6 40 103-142 5-48 (124)
15 PF10757 YbaJ: Biofilm formati 50.9 19 0.0004 26.6 2.9 43 102-152 15-57 (122)
16 PF10662 PduV-EutP: Ethanolami 44.2 24 0.00051 26.7 2.7 30 98-127 42-71 (143)
17 TIGR03764 ICE_PFGI_1_parB inte 41.1 54 0.0012 27.2 4.6 53 79-131 30-89 (258)
18 smart00874 B5 tRNA synthetase 36.9 99 0.0022 19.5 4.6 25 75-99 16-40 (71)
19 cd08624 PI-PLCc_beta2 Catalyti 31.6 82 0.0018 26.2 4.2 38 58-99 56-98 (261)
20 PF09419 PGP_phosphatase: Mito 30.5 1.3E+02 0.0029 23.2 5.0 94 16-128 14-113 (168)
21 PF10096 DUF2334: Uncharacteri 30.4 2.9E+02 0.0062 22.2 9.4 54 79-133 17-80 (243)
22 PRK13364 protocatechuate 4,5-d 28.7 84 0.0018 26.1 3.9 120 15-149 43-175 (278)
23 cd08625 PI-PLCc_beta3 Catalyti 28.0 1E+02 0.0022 25.5 4.2 38 58-99 56-98 (258)
24 PRK02220 4-oxalocrotonate taut 27.4 1.1E+02 0.0023 18.6 3.4 29 125-153 3-31 (61)
25 PF10330 Stb3: Putative Sin3 b 26.8 77 0.0017 22.3 2.8 25 124-148 30-54 (92)
26 PLN03241 magnesium chelatase s 26.5 39 0.00084 34.3 1.7 41 17-59 663-704 (1353)
27 PRK06714 S-adenosylhomocystein 25.8 36 0.00079 27.4 1.2 17 17-33 65-81 (236)
28 PLN03069 magnesiumprotoporphyr 25.4 39 0.00084 34.0 1.5 41 17-59 600-641 (1220)
29 TIGR00013 taut 4-oxalocrotonat 24.8 1.3E+02 0.0028 18.3 3.5 30 123-153 2-31 (63)
30 PRK15324 type III secretion sy 24.6 4E+02 0.0086 21.9 7.8 86 68-153 17-116 (252)
31 TIGR02025 BchH magnesium chela 24.6 41 0.00088 33.8 1.5 41 17-59 573-614 (1216)
32 PRK13405 bchH magnesium chelat 24.3 42 0.0009 33.7 1.5 40 17-59 593-634 (1209)
33 PRK01964 4-oxalocrotonate taut 23.9 1.2E+02 0.0027 18.7 3.3 30 122-153 2-31 (64)
34 PRK12493 magnesium chelatase s 23.2 45 0.00097 33.8 1.5 41 17-59 587-628 (1310)
35 PRK09989 hypothetical protein; 22.7 3.9E+02 0.0084 21.1 8.4 76 77-152 39-131 (258)
36 cd05758 Ig5_KIRREL3-like Fifth 22.0 30 0.00064 23.3 -0.0 13 94-106 71-83 (98)
37 PTZ00397 macrophage migration 22.0 1.6E+02 0.0035 20.6 3.9 34 120-153 55-88 (116)
38 PF13107 DUF3964: Protein of u 22.0 33 0.00072 24.4 0.2 19 114-132 77-95 (109)
39 PRK14697 bifunctional 5'-methy 21.9 49 0.0011 26.4 1.2 18 17-34 65-82 (233)
40 PF01514 YscJ_FliF: Secretory 21.5 1.9E+02 0.0041 22.8 4.5 79 74-152 31-122 (206)
41 cd04974 Ig3_FGFR Third immunog 21.2 34 0.00073 22.7 0.1 12 97-108 64-75 (90)
42 cd05725 Ig3_Robo Third immunog 21.2 23 0.0005 22.0 -0.7 10 98-107 45-54 (69)
43 cd05763 Ig_1 Subgroup of the i 21.1 29 0.00063 21.9 -0.2 11 97-107 49-59 (75)
44 cd05713 Ig_MOG_like Immunoglob 20.8 26 0.00057 23.4 -0.5 12 98-109 75-86 (100)
45 cd05718 Ig1_PVR_like First imm 20.4 31 0.00067 22.8 -0.2 14 97-110 71-84 (98)
46 cd05901 Ig_Versican Immunoglob 20.4 14 0.00031 26.8 -2.0 12 98-109 89-100 (117)
47 smart00408 IGc2 Immunoglobulin 20.3 32 0.00069 19.6 -0.1 10 97-106 48-57 (63)
48 cd08594 PI-PLCc_eta Catalytic 20.3 1.7E+02 0.0037 23.9 4.0 35 59-97 55-94 (227)
No 1
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=100.00 E-value=2.2e-40 Score=262.43 Aligned_cols=135 Identities=39% Similarity=0.613 Sum_probs=99.5
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++++.|+||++|+|..++++||++|++|.+++|.. +||. .++|+||+++|+++|+++|+|++
T Consensus 56 l~~~~PdlVIhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~-~gp~--~~~t~lp~~~l~~~l~~~gip~~ 132 (202)
T PF01470_consen 56 LEEHQPDLVIHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEPIVP-DGPE--AYFTTLPVRALVEALREAGIPVE 132 (202)
T ss_dssp HHHH--SEEEEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-SST-TS-S--EEE-BS-HHHHHHHHHHTT--EE
T ss_pred HHhcCCcEEEEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCccccC-CCcc--ceecCCCHHHHHHHHHHcCCCCc
Confidence 46789999999999999999999999999988999999999999999986 6775 46899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCCC----------ChHHHHHHHHHHHHHHHhh
Q 031718 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTI----------DEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~~----------~~e~~~~~v~~lI~~ia~~ 153 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||+++++ +.+.+.+.++..|+++++.
T Consensus 133 ~S~dAG~YlCN~~~Y~sl~~~~~~~~~~~~~FvHvP~~~~~~~~~~~~~s~~l~~~~~a~~~~~~~~~~~ 202 (202)
T PF01470_consen 133 ISNDAGRYLCNYIYYRSLHHAERRGPPIPAGFVHVPPLPEQVAEKPGAPSMSLETMVRAVRAAIEAIVDE 202 (202)
T ss_dssp EES---SSHHHHHHHHHHHHHHHHSTTSEEEEEEE-B-GGGHTTCTTC-B--HHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhhHHHHHHHHHHHHHhhcCCCCceeEEeeCCchHhhccCCCCCCCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998754 578999999986543 3467788899999988763
No 2
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=5.5e-39 Score=255.61 Aligned_cols=135 Identities=28% Similarity=0.475 Sum_probs=119.4
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++++.|+||++|+|.+++++||++|++|.+++|+. +||.. ++|++|+++++++|++.|+|++
T Consensus 56 l~~~~Pd~vlhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~-~gp~~--y~ttlp~~~l~~~l~~~gip~~ 132 (208)
T PRK13194 56 LDEIKPDITINLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVE-GAPAA--YFATLPTREIVEELKKNGIPAV 132 (208)
T ss_pred HHHhCCCEEEEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccC-CCCCc--ccCCCCHHHHHHHHHhcCCCcE
Confidence 36779999999999999999999999999989999999999999999986 67753 6899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCC--------------CCChHHHHHHHHHHHHHHHhh
Q 031718 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS--------------TIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~--------------~~~~e~~~~~v~~lI~~ia~~ 153 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||..+ .++-+.+.+.++..|++++.+
T Consensus 133 ~S~dAG~ylCN~iyY~sL~~~~~~~~~~~~~FvHVP~~~~~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~ 206 (208)
T PRK13194 133 LSYSAGTYLCNYVMYLTLHHSATKGYPKMAGFIHVPYTPDQVIEKIGKGKNTPSMCLEMEIEAVKIAIRVALEE 206 (208)
T ss_pred EeCCCccchhHHHHHHHHHHHHhcCCCceeEEEEcCCcHHHhhhhcccCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998654 4679999999533 344566778888888888765
No 3
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=1.7e-38 Score=253.00 Aligned_cols=134 Identities=23% Similarity=0.319 Sum_probs=117.0
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++++.|++|++|+|.+++++||++|++|.+++|+. +||. .++|+||+++|+++|+++|+|++
T Consensus 56 ~~~~~Pd~vl~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I~~-~gp~--~~~t~lp~~~l~~~l~~~Gip~~ 132 (209)
T PRK13193 56 IREMKPILTLGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKIDP-LGQD--GIFTNIPVEDLVDLLNENGIPAE 132 (209)
T ss_pred HHHHCCCEEEEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcccC-CCcc--eeecCCCHHHHHHHHHhcCCCce
Confidence 46789999999999999999999999999999999999999999999986 6775 47899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhcCCceEEEEcCCCCCCCh-----------HHHHHHHHHHHHHHHh
Q 031718 96 ISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDE-----------DTQMQFVATLFEAVAS 152 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~-----------e~~~~~v~~lI~~ia~ 152 (154)
+|+|||+|||||+||+||++.++.+.+++|||||+++++.. +.+.+.++..|+.+.+
T Consensus 133 ~S~~AG~yvCN~vyY~sl~~~~~~~~~a~FIHVP~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~ 200 (209)
T PRK13193 133 LSLSAGSYLCNNAMYIIIREARKYNSLGGFIHVPLHESYAARIQRPIPSMSLDTMIRGIRLSMEFILT 200 (209)
T ss_pred EecCCccchhHHHHHHHHHHHhccCCeeEEEEeCCchhhhhhcCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865567899999998776543 3344556666666543
No 4
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=5.4e-38 Score=250.42 Aligned_cols=136 Identities=29% Similarity=0.424 Sum_probs=120.9
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCce--ecCCCCcccccccCCcHHHHHHHHHHCCCc
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPV--VLEDGGISRSRQTSLSTEAILKFLKKKGFD 93 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i--~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~ 93 (154)
.++++||+|||+|++++++.|+||++|+|..++++||++|++|.+.+| .. +||. .++|+||+++|++.|++.|+|
T Consensus 57 ~~~~~Pd~vi~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~-~gp~--~y~stLpv~~l~~~l~~~gip 133 (211)
T PRK13196 57 LDELQPSAVLLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTPVCTEP-DAPA--AYLSTLPLRAILAAWHDAGIP 133 (211)
T ss_pred HHHhCCCEEEEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCCcccCC-CCcc--ceecCCCHHHHHHHHHhcCCC
Confidence 478899999999999999999999999999899999999999999999 64 5765 478999999999999999999
Q ss_pred eEecCCCCcchhhHHHHHHHHHHhhc---CCceEEEEcCCC--------------CCCChHHHHHHHHHHHHHHHhhC
Q 031718 94 VVISDDAGRFVCNYVYYHSLRFAEQK---GHKSLFVHVPLF--------------STIDEDTQMQFVATLFEAVASTC 154 (154)
Q Consensus 94 v~~S~dAG~ylCn~iyY~sL~~~~~~---~~~~~FVHVP~~--------------~~~~~e~~~~~v~~lI~~ia~~~ 154 (154)
+++|+|||+|||||+||++|++.+++ +.+++|||||++ +.++.|.+.+.|...|+.+.+++
T Consensus 134 ~~iS~~AG~YlCN~v~Y~sL~~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~p~m~~~~~~~~v~~~i~~~~~~~ 211 (211)
T PRK13196 134 GHISNTAGLYVCNFVLYHALHQLHLRGRAEVPCGFLHVPANAQVALAVAGDRPPLPYLPQEEITRAVRVAAETMAGQN 211 (211)
T ss_pred ceEccCCCceeehHHHHHHHHHHHhcCCCCCeeEEEEcCCCHHHhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999997544 368999999977 23456778888999999988764
No 5
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=4.8e-38 Score=252.04 Aligned_cols=134 Identities=25% Similarity=0.341 Sum_probs=116.8
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCC---CCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCC
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFL---CPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGF 92 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~---~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~ 92 (154)
+++++||+|||+|++++++.|++||+|+|.++++ +||++|++|.+++|+. +||. .|+|+||+++|+++|++.|+
T Consensus 57 i~~~~Pd~Vi~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~-~gp~--ay~stLpv~~iv~~l~~~gi 133 (222)
T PRK13195 57 IAEIEPALVIMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGEPTDP-AGPV--AYHATVPVRAMVLAMRKAGV 133 (222)
T ss_pred HHHHCCCEEEEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCCCcccC-CCcc--eeecCCCHHHHHHHHHhcCC
Confidence 4788999999999999999999999999987654 9999999999999985 6886 46899999999999999999
Q ss_pred ceEecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCC------------CChHHHHHHHHHHHHHHHh
Q 031718 93 DVVISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST------------IDEDTQMQFVATLFEAVAS 152 (154)
Q Consensus 93 ~v~~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~------------~~~e~~~~~v~~lI~~ia~ 152 (154)
|+++|+|||+|||||+||++|++.+++ +.+++|||||++++ ++.+.+.+.++..|+++.+
T Consensus 134 pa~vS~~AGtYvCN~v~Y~sL~~~~~~~~~~~agFIHVP~~p~q~~~~~~~~~psm~l~~~~~av~~~i~~~~~ 207 (222)
T PRK13195 134 PADVSDAAGTFVCNHLMYGVLHHLAQKGLPVRAGWIHLPCLPSVAALDHNLGVPSMSVQTAVAGVTAGIEAAIR 207 (222)
T ss_pred CceEecCCCcceehHHHHHHHHHHhhcCCCceEEEEEcCCCHHHhhhcCCCCCCCCcHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999998654 35899999996643 3345667778888887754
No 6
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=1.1e-37 Score=249.21 Aligned_cols=134 Identities=28% Similarity=0.488 Sum_probs=119.1
Q ss_pred CccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceEe
Q 031718 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVVI 96 (154)
Q Consensus 17 ~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~~ 96 (154)
++++||+|||+|++++++.|+||++|+|..++++||++|.+|.+.+|.. +||. .++|+||+++|++++++.|+|+++
T Consensus 58 ~~~~Pd~vih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~t~Lp~~~l~~~l~~~gip~~~ 134 (215)
T PRK13197 58 EEVQPDAVICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIVE-DGPA--AYFSTLPIKAMVKAIREAGIPASV 134 (215)
T ss_pred HHhCCCEEEEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcccC-CCCc--eeEcCCCHHHHHHHHHHcCCCcee
Confidence 5779999999999999999999999999988899999999999999985 6775 478999999999999999999999
Q ss_pred cCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCC----------CChHHHHHHHHHHHHHHHhh
Q 031718 97 SDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFST----------IDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 97 S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~----------~~~e~~~~~v~~lI~~ia~~ 153 (154)
|+|||+|||||+||+||++.+++ +.+++|||||++++ ++.|.+.+.++.+|+.+.++
T Consensus 135 S~dAG~YlCN~i~Y~sl~~~~~~~~~~~a~FIHvP~~~~~~~~~~~~p~~~~~~~~~av~~~i~~~~~~ 203 (215)
T PRK13197 135 SNTAGTFVCNHVMYGLLHLLDKKYPNIRAGFIHIPYLPEQAVNKPGTPSMSLEDIVRGLELAIEAIVEN 203 (215)
T ss_pred ccCCCceeehHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999987653 46899999998833 44567778888888887653
No 7
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=100.00 E-value=4.1e-37 Score=245.46 Aligned_cols=134 Identities=31% Similarity=0.449 Sum_probs=117.0
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++++.|+||++|+|..++++||++|++|.+.+|+. +||. .++|+||+++|+++|++.|+|++
T Consensus 54 l~~~~Pd~vi~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~-~gp~--~~~ttLpv~~l~~~l~~~gip~~ 130 (212)
T TIGR00504 54 IDEIEPDIVIMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVP-DGPA--AYFATLPVRAMVLAMKKAGIPAD 130 (212)
T ss_pred HHHHCCCEEEEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccC-CCCc--eeecCCCHHHHHHHHHHcCCCee
Confidence 36789999999999999999999999999988999999999999999986 6775 36899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCCCC----------ChHHHHHHHHHHHHHHHh
Q 031718 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFSTI----------DEDTQMQFVATLFEAVAS 152 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~~~----------~~e~~~~~v~~lI~~ia~ 152 (154)
+|+|||+|||||+||+||++.+++ +.+++|||||+.+++ +.+...+.++..|+++.+
T Consensus 131 ~S~dAG~ylCN~i~Y~sL~~~~~~~~~~~agFIHVP~~~~~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ 199 (212)
T TIGR00504 131 VSYTAGTFVCNHLMYGLLHHLAQKGLPVRAGFIHVPYLPSQVALKHGVPSMSLDTAVAGVTIAIETAIR 199 (212)
T ss_pred EeCCCCceeeHHHHHHHHHHHHhcCCCceeEEEEcCCchhhhhcCCCCCCccHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987654 368999999966543 334556677777887754
No 8
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=100.00 E-value=2.5e-35 Score=231.53 Aligned_cols=117 Identities=35% Similarity=0.555 Sum_probs=106.4
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
.++++||+|||+|++++++.|+||++|+|.+++..||++|++|.+.+|.. +|+. .++|++|++++++++++.|++++
T Consensus 56 ~~~~~pd~vlhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~-~g~~--~~~t~lp~~~l~~~l~~~g~~~~ 132 (194)
T cd00501 56 IEEHKPDLVIHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVP-GGPA--AYFSTLPVKAIVKALREAGIPAR 132 (194)
T ss_pred HHHhCCCEEEEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccC-CCCC--eeeecCCHHHHHHHHHhcCCCce
Confidence 36779999999999999999999999999988889999999999999986 6775 47899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhcC--CceEEEEcCCCCCCC
Q 031718 96 ISDDAGRFVCNYVYYHSLRFAEQKG--HKSLFVHVPLFSTID 135 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~~--~~~~FVHVP~~~~~~ 135 (154)
+|+|||+|||||+||+||++..+++ .+++|||||++++..
T Consensus 133 ~S~dAG~YlCn~~~Y~sL~~~~~~~~~~~a~FvHvP~~~~~~ 174 (194)
T cd00501 133 VSNDAGTYLCNHVYYGSLHESATRGPFIRAGFIHVPYSPEQV 174 (194)
T ss_pred EcCCCCceeeHHHHHHHHHHHhccCCCceeceeecCCCHHHh
Confidence 9999999999999999999986543 689999999987653
No 9
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-35 Score=228.14 Aligned_cols=134 Identities=28% Similarity=0.465 Sum_probs=119.5
Q ss_pred CCccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHCCCceE
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGFDVV 95 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~~v~ 95 (154)
+++++||+||++|++++|..|++||+|.|..++++|||+|++|.+++|.+ +||+. ++|+||+++++.+++++|+|+.
T Consensus 56 i~~~qPd~vl~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDepI~~-dGpaA--YfstlPvkamv~~~~~~GiPA~ 132 (207)
T COG2039 56 IAEVQPDLVLAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEPIDP-DGPAA--YFSTLPVKAMVQAIREAGIPAS 132 (207)
T ss_pred HHhhCCCeEEEecccCCCCcCChhheeeccccccCCCCCCCCcCCCccCC-CCchh--hhhcCcHHHHHHHHHHcCCChh
Confidence 47889999999999999999999999999999999999999999999997 78875 5899999999999999999999
Q ss_pred ecCCCCcchhhHHHHHHHHHHhhc--CCceEEEEcCCCC----------CCChHHHHHHHHHHHHHHHh
Q 031718 96 ISDDAGRFVCNYVYYHSLRFAEQK--GHKSLFVHVPLFS----------TIDEDTQMQFVATLFEAVAS 152 (154)
Q Consensus 96 ~S~dAG~ylCn~iyY~sL~~~~~~--~~~~~FVHVP~~~----------~~~~e~~~~~v~~lI~~ia~ 152 (154)
+|+.||+|+||+++|..|++..++ +.+++|||||..+ .++-++..+.++.-|+.+.+
T Consensus 133 vS~sAGTyvCNhvmY~~l~~~~~~~~~~~~GFiHvPy~peqa~~~~~~PsMsl~~ivrgv~~aIe~~~~ 201 (207)
T COG2039 133 VSNSAGTYVCNHVMYGLLHHLAKKGPPVRAGFIHVPYLPEQAARKPNTPSMSLDTIVRGVRAAIEAILR 201 (207)
T ss_pred hhcccchhhhHHHHHHHHHHHHHhCCCCcceeEeecCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999776 4689999999643 34556666667777777664
No 10
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-23 Score=167.14 Aligned_cols=125 Identities=32% Similarity=0.594 Sum_probs=112.5
Q ss_pred cEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHC---------CC
Q 031718 22 QCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKK---------GF 92 (154)
Q Consensus 22 d~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~---------g~ 92 (154)
...||+|.++..+.+.+|+.|++. +|...|.+|++|.+++... +++.. .+++.++++.+++...+. |+
T Consensus 79 ~~aIhl~sh~~knti~i~~~af~~-gy~~~d~~g~vp~~nkv~~-~~~d~-~~~s~i~c~~vv~~v~e~~~~~~~~~~gl 155 (213)
T KOG4755|consen 79 QSAIHLGSHSQKNTIQIEQSAFSS-GYTQKDKCGKVPEGNKVKC-DGPDT-GGRSCINCEIVVKDVNERCASDGQKFGGL 155 (213)
T ss_pred eEEEEecccccCcEEEEEEecccC-CccchhhcccccCCceeEe-ccccc-cccccccHHHHHHhhhhhhhhccccCCce
Confidence 889999999999999999999998 8999999999999999986 56644 578999999999888773 69
Q ss_pred ceEecCCCCcchhhHHHHHHHHHHhhcCCceEEEEcCCCCC-CChHHHHHHHHHHHHHHHhhC
Q 031718 93 DVVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHVPLFST-IDEDTQMQFVATLFEAVASTC 154 (154)
Q Consensus 93 ~v~~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FVHVP~~~~-~~~e~~~~~v~~lI~~ia~~~ 154 (154)
+|++|.|||||||||+||.+|++. +.+++||||||+.. ...|.+.++++++| +++.|
T Consensus 156 ~V~~s~dagR~lc~y~y~~fl~q~---~~rslfv~VPpl~~~~tke~~~~~i~~il--~~~~c 213 (213)
T KOG4755|consen 156 EVEISEDAGRYLCGYVYYSFLKQK---PCRSLFVHVPPLEGACTKEVQMRVIRSIL--FLSYC 213 (213)
T ss_pred EEEEcCcccceechhhhhhhhhhc---ccccceEecCccccccCHHHHHHHHHHHH--HHhhC
Confidence 999999999999999999988887 78999999999866 67899999999999 88766
No 11
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=99.31 E-value=5.4e-12 Score=96.55 Aligned_cols=79 Identities=25% Similarity=0.378 Sum_probs=68.8
Q ss_pred ccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcHHHHHHHHHHC-------
Q 031718 18 RLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLSTEAILKFLKKK------- 90 (154)
Q Consensus 18 ~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~------- 90 (154)
+.+||++||+|.|+..+.|++|++|+-. +|..||.+|++|.+.++... +. ...++|.+|+++|++.+++.
T Consensus 79 ~~~~~~viHL~~Hs~kNtI~ieq~AFsd-GY~~~D~nG~vPegnkv~~~-~~-e~~lkt~vdce~Lvkev~E~cglDg~K 155 (166)
T PF06162_consen 79 KEQPDFVIHLASHSVKNTIYIEQKAFSD-GYCQPDKNGCVPEGNKVKCE-SE-ETVLKTFVDCEELVKEVNEKCGLDGEK 155 (166)
T ss_pred hhCCCeEEEecCCCCcceEEEEehhhcC-CCcCCCCCCcCCCCCeeccC-cc-ccccccccCHHHHHHHHHHHhcccccc
Confidence 3469999999999999999999999998 89999999999999999653 33 23689999999999999984
Q ss_pred --CCceEecCC
Q 031718 91 --GFDVVISDD 99 (154)
Q Consensus 91 --g~~v~~S~d 99 (154)
|+.++.|+|
T Consensus 156 yGgL~Veksed 166 (166)
T PF06162_consen 156 YGGLKVEKSED 166 (166)
T ss_pred cCcEEEEecCC
Confidence 677888875
No 12
>PRK10667 Hha toxicity attenuator; Provisional
Probab=60.75 E-value=10 Score=27.88 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=30.0
Q ss_pred cchhhHHHHHHHHHHhhcCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 031718 102 RFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 152 (154)
Q Consensus 102 ~ylCn~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~lI~~ia~ 152 (154)
.|||+.+|=.+|.... ....++|+=|... +---+.+||+.||.
T Consensus 15 kyLCe~L~~e~i~~L~--~s~hgWvNDptS~------~nlqLNeLIEHIa~ 57 (122)
T PRK10667 15 KFLCETLYHECLANLG--ESNHGWVNDPTSA------VNLQLNELIEHIAT 57 (122)
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCcCCCchH------hhhhHHHHHHHHHH
Confidence 4999999999998873 4667888766443 22225677777764
No 13
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=59.84 E-value=69 Score=23.71 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHCCCceEecCCCCcch---------h------hHHHHHHHHHHhhcCCceEEEEcC---CCCCCChHHHH
Q 031718 79 STEAILKFLKKKGFDVVISDDAGRFV---------C------NYVYYHSLRFAEQKGHKSLFVHVP---LFSTIDEDTQM 140 (154)
Q Consensus 79 ~~~~l~~~l~~~g~~v~~S~dAG~yl---------C------n~iyY~sL~~~~~~~~~~~FVHVP---~~~~~~~e~~~ 140 (154)
.++++.+.+++.|+.+....-..... . -..+...+..++.-+.+.+-+|.+ .......+...
T Consensus 28 ~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~ 107 (213)
T PF01261_consen 28 EAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENW 107 (213)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHH
Confidence 46788999999999843221111111 1 235556666666668999999988 44445555555
Q ss_pred HHHHHHHHHHHh
Q 031718 141 QFVATLFEAVAS 152 (154)
Q Consensus 141 ~~v~~lI~~ia~ 152 (154)
+.+.+-++.|++
T Consensus 108 ~~~~~~l~~l~~ 119 (213)
T PF01261_consen 108 ERLAENLRELAE 119 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
No 14
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=59.11 E-value=15 Score=26.84 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=31.3
Q ss_pred chhhHHHHHHHHHHhhc----CCceEEEEcCCCCCCChHHHHHH
Q 031718 103 FVCNYVYYHSLRFAEQK----GHKSLFVHVPLFSTIDEDTQMQF 142 (154)
Q Consensus 103 ylCn~iyY~sL~~~~~~----~~~~~FVHVP~~~~~~~e~~~~~ 142 (154)
|+||+..|.++..+... +..+--|.||....++++.....
T Consensus 5 F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~A 48 (124)
T PF02662_consen 5 FCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRA 48 (124)
T ss_pred EEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHH
Confidence 89999999999877422 45688999999998888655443
No 15
>PF10757 YbaJ: Biofilm formation regulator YbaJ; InterPro: IPR019693 YbaJ regulates biofilm formation. It also has an important role in the regulation of motility in the biofilm. YbaJ functions in increasing conjugation, aggregation and decreasing the motility, resulting in an increase of biofilm [].
Probab=50.90 E-value=19 Score=26.57 Aligned_cols=43 Identities=16% Similarity=0.312 Sum_probs=29.8
Q ss_pred cchhhHHHHHHHHHHhhcCCceEEEEcCCCCCCChHHHHHHHHHHHHHHHh
Q 031718 102 RFVCNYVYYHSLRFAEQKGHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAS 152 (154)
Q Consensus 102 ~ylCn~iyY~sL~~~~~~~~~~~FVHVP~~~~~~~e~~~~~v~~lI~~ia~ 152 (154)
.|||+-+|=.++.... ....++|+=|... +--=+.+||+.||.
T Consensus 15 k~LCe~L~~e~~~~L~--~s~~gWvNDptS~------~nlqLNeLIEHIA~ 57 (122)
T PF10757_consen 15 KYLCESLYDEAIATLG--DSHHGWVNDPTSA------VNLQLNELIEHIAA 57 (122)
T ss_pred HHHHHHHHHHHHHHhc--cCCCCCcCCCchh------hhhhHHHHHHHHHH
Confidence 4999999999998873 4677888766543 11125677777764
No 16
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=44.22 E-value=24 Score=26.66 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=21.6
Q ss_pred CCCCcchhhHHHHHHHHHHhhcCCceEEEE
Q 031718 98 DDAGRFVCNYVYYHSLRFAEQKGHKSLFVH 127 (154)
Q Consensus 98 ~dAG~ylCn~iyY~sL~~~~~~~~~~~FVH 127 (154)
+.||.|+.|=.||++|-.....-.-++|++
T Consensus 42 DTPGEyiE~~~~y~aLi~ta~dad~V~ll~ 71 (143)
T PF10662_consen 42 DTPGEYIENPRFYHALIVTAQDADVVLLLQ 71 (143)
T ss_pred ECChhheeCHHHHHHHHHHHhhCCEEEEEe
Confidence 679999999999999987654222334443
No 17
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=41.13 E-value=54 Score=27.23 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHCCC--ceEecCCCC--cchh---hHHHHHHHHHHhhcCCceEEEEcCCC
Q 031718 79 STEAILKFLKKKGF--DVVISDDAG--RFVC---NYVYYHSLRFAEQKGHKSLFVHVPLF 131 (154)
Q Consensus 79 ~~~~l~~~l~~~g~--~v~~S~dAG--~ylC---n~iyY~sL~~~~~~~~~~~FVHVP~~ 131 (154)
.+++|.+.+++.|+ |+.+...+| .|+- +..=|+++...........|-.||..
T Consensus 30 ~l~eLa~SIre~Gl~qPI~Vr~~p~~~~Yii~~GG~rRl~AlkeL~~et~~~r~~~Ipai 89 (258)
T TIGR03764 30 KYDEIKASIRERGLDQPPKVTRRPGESDYIIRNGGNTRLQILKELWQETGDERFFRIHCL 89 (258)
T ss_pred HHHHHHHHHHHhCCcCCeEEEecCCCCcEEEeeCccHHHHHHHHHHHHHhhccCceeeEE
Confidence 47889999999997 566664332 2766 46668888665432222334444443
No 18
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=36.89 E-value=99 Score=19.50 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=19.3
Q ss_pred ccCCcHHHHHHHHHHCCCceEecCC
Q 031718 75 QTSLSTEAILKFLKKKGFDVVISDD 99 (154)
Q Consensus 75 ~T~l~~~~l~~~l~~~g~~v~~S~d 99 (154)
...++-+++.+.|++.|++++.+.+
T Consensus 16 G~~i~~~ei~~~L~~lg~~~~~~~~ 40 (71)
T smart00874 16 GLDLSAEEIEEILKRLGFEVEVSGD 40 (71)
T ss_pred CCCCCHHHHHHHHHHCCCeEEecCC
Confidence 3467778999999999998866433
No 19
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=31.60 E-value=82 Score=26.20 Aligned_cols=38 Identities=16% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCCCceecCCCCcccccccCCcHHHHHHHHHHC-----CCceEecCC
Q 031718 58 PQQIPVVLEDGGISRSRQTSLSTEAILKFLKKK-----GFDVVISDD 99 (154)
Q Consensus 58 p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~-----g~~v~~S~d 99 (154)
|.++|++. .|- .+.+.++++++++.+++- .+|+.+|-.
T Consensus 56 ~~~ePvV~-HG~---tlts~i~f~dv~~~I~~~AF~~s~yPvIlslE 98 (261)
T cd08624 56 PDEEPIIT-HGF---TMTTEILFKDAIEAIAESAFKTSPYPVILSFE 98 (261)
T ss_pred CCCCCEEe-eCC---CcccCcCHHHHHHHHHHHhccCCCCCEEEEeh
Confidence 45678886 454 467999999999999983 668888744
No 20
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=30.48 E-value=1.3e+02 Score=23.15 Aligned_cols=94 Identities=17% Similarity=0.079 Sum_probs=50.9
Q ss_pred CCccCCcEEEEecccCCCcceeeee--eEecCCCCCCCCCCCCC-CCCCceecCCCCcccccccCCcHHHHHHHHHHCCC
Q 031718 16 PHRLAPQCEIHVGVNSGSSKFALER--RAVNEATFLCPDQLGWQ-PQQIPVVLEDGGISRSRQTSLSTEAILKFLKKKGF 92 (154)
Q Consensus 16 ~~~~~pd~vih~G~~~~~~~i~lE~--~A~N~~~~~~pD~~G~~-p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~g~ 92 (154)
+....|++.+ ..-..|.+|. .-.+...+.+-|-|+.. +.+... -.-++.++++++++.+.
T Consensus 14 p~l~~P~l~V-----~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~------------i~~~~~~~~~~l~~~~~ 76 (168)
T PF09419_consen 14 PSLLLPHLYV-----PSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYEDE------------IPPEYAEWLNELKKQFG 76 (168)
T ss_pred ccccCCCEEc-----CChhhCCcchhhhhhcCceEEEEcCCCCCCCCCcCc------------CCHHHHHHHHHHHHHCC
Confidence 3445565554 2334566665 32222245677877753 222111 12345778888888776
Q ss_pred c---eEecCCCCcchhhHHHHHHHHHHhhcCCceEEEEc
Q 031718 93 D---VVISDDAGRFVCNYVYYHSLRFAEQKGHKSLFVHV 128 (154)
Q Consensus 93 ~---v~~S~dAG~ylCn~iyY~sL~~~~~~~~~~~FVHV 128 (154)
. +-+|++||..- ..-+-++-...+.-+.+ +|.|-
T Consensus 77 ~~~v~IvSNsaGs~~-d~~~~~a~~~~~~lgIp-vl~h~ 113 (168)
T PF09419_consen 77 KDRVLIVSNSAGSSD-DPDGERAEALEKALGIP-VLRHR 113 (168)
T ss_pred CCeEEEEECCCCccc-CccHHHHHHHHHhhCCc-EEEeC
Confidence 5 78999999876 43333333333222333 45664
No 21
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=30.43 E-value=2.9e+02 Score=22.21 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHCCCceEec------CCCCcc---hh-hHHHHHHHHHHhhcCCceEEEEcCCCCC
Q 031718 79 STEAILKFLKKKGFDVVIS------DDAGRF---VC-NYVYYHSLRFAEQKGHKSLFVHVPLFST 133 (154)
Q Consensus 79 ~~~~l~~~l~~~g~~v~~S------~dAG~y---lC-n~iyY~sL~~~~~~~~~~~FVHVP~~~~ 133 (154)
.+.++.+.|.+.|+|..++ +..+.+ +. +--|-..|+..+. .+..+++|-+-...
T Consensus 17 ~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~-~Gg~I~lHGYtHq~ 80 (243)
T PF10096_consen 17 KLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQA-RGGEIVLHGYTHQY 80 (243)
T ss_pred HHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHh-cCCEEEEEecceec
Confidence 3467788899999997777 233333 44 5566777887764 45678888886544
No 22
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=28.75 E-value=84 Score=26.13 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=59.9
Q ss_pred CCCccCCcEEEEec-ccCCCcceeee---eeEecCCCCCCCCCCCCCCCCCceecCCCCcccccccCCcH-HHHHHHHHH
Q 031718 15 GPHRLAPQCEIHVG-VNSGSSKFALE---RRAVNEATFLCPDQLGWQPQQIPVVLEDGGISRSRQTSLST-EAILKFLKK 89 (154)
Q Consensus 15 ~~~~~~pd~vih~G-~~~~~~~i~lE---~~A~N~~~~~~pD~~G~~p~~~~i~~~~g~~~~~l~T~l~~-~~l~~~l~~ 89 (154)
.+++.+||+||-+| -|. ..+..+ ..+......-.+|..++-+... .. +....++ ++|++.+.+
T Consensus 43 ~v~~~~PDvvVvis~dH~--~~ff~d~~p~f~i~~~~~~~g~~~~~g~~~~-~~---------~~~~~~lA~~i~~~l~~ 110 (278)
T PRK13364 43 WLEKVKPDVAVVFYNDHG--LNFFLDKMPTFAVGAAPEYSNADEGWGIPTL-AP---------FKGDTELSWHIIESLVE 110 (278)
T ss_pred HHHHhCCCEEEEECCchH--hhhccccCCeEEEeeCceecCChhhcCCCCC-CC---------CCCCHHHHHHHHHHHHH
Confidence 34678899999999 443 233333 4444443333334333211111 00 1112222 567888888
Q ss_pred CCCceEecCCCCcchhhHHHHHHHHHHhhc---CCceEEEEcCCCC-C-CChHHHH---HHHHHHHHH
Q 031718 90 KGFDVVISDDAGRFVCNYVYYHSLRFAEQK---GHKSLFVHVPLFS-T-IDEDTQM---QFVATLFEA 149 (154)
Q Consensus 90 ~g~~v~~S~dAG~ylCn~iyY~sL~~~~~~---~~~~~FVHVP~~~-~-~~~e~~~---~~v~~lI~~ 149 (154)
.|+++..|.+.+. .+=.+.-|+..... +.+++=|-|+... - .+.+... +.|.++|+.
T Consensus 111 ~gid~~~~~~~~l---DHG~~vPL~~l~~~~d~~~pvVpv~ln~~~~p~~~~~r~~~lG~al~~~i~~ 175 (278)
T PRK13364 111 EEFDITTCQEMLV---DHAFTLPLELFWPGRDYPVKVVPVCINTVQHPLPSARRCYKLGQAIGRAIAS 175 (278)
T ss_pred cCCCeecccCCCC---CcchhhhHHHhCcccCCCCCEEEEEeeccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999988866543 34444455544321 2445555553332 1 2344433 446666553
No 23
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=27.98 E-value=1e+02 Score=25.51 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCCCceecCCCCcccccccCCcHHHHHHHHHHC-----CCceEecCC
Q 031718 58 PQQIPVVLEDGGISRSRQTSLSTEAILKFLKKK-----GFDVVISDD 99 (154)
Q Consensus 58 p~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~-----g~~v~~S~d 99 (154)
|.++|++. .|. .+.+.++++++++.+++- .+|+.+|-.
T Consensus 56 ~~~eP~v~-Hg~---t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE 98 (258)
T cd08625 56 PEEEPFIT-HGF---TMTTEIPFKDVIEAIAESAFKTSPYPVILSFE 98 (258)
T ss_pred CCCCCEEe-eCC---ccccCcCHHHHHHHHHHHhccCCCCCEEEEeh
Confidence 55678886 454 367999999999999983 678887743
No 24
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=27.36 E-value=1.1e+02 Score=18.65 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=18.3
Q ss_pred EEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 031718 125 FVHVPLFSTIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 125 FVHVP~~~~~~~e~~~~~v~~lI~~ia~~ 153 (154)
||||=-....+.|+-++++.+|-+.+++.
T Consensus 3 ~i~i~~~~Grs~eqk~~l~~~it~~l~~~ 31 (61)
T PRK02220 3 YVHIKLIEGRTEEQLKALVKDVTAAVSKN 31 (61)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 45553333356777777888887777654
No 25
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=26.81 E-value=77 Score=22.31 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHH
Q 031718 124 LFVHVPLFSTIDEDTQMQFVATLFE 148 (154)
Q Consensus 124 ~FVHVP~~~~~~~e~~~~~v~~lI~ 148 (154)
+=--||.|..+++.+|+++|..-++
T Consensus 30 Lt~~vPgF~~ls~sKqRRLi~~ALE 54 (92)
T PF10330_consen 30 LTTSVPGFSDLSPSKQRRLIMAALE 54 (92)
T ss_pred HhccCCCcccCCHHHHHHHHHHHHh
Confidence 3346899999999999998877655
No 26
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=26.52 E-value=39 Score=34.35 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=26.3
Q ss_pred CccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCC-CCCCC
Q 031718 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQL-GWQPQ 59 (154)
Q Consensus 17 ~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~-G~~p~ 59 (154)
+.++.|+|||||.|+.- ....=+..=.. ..++||.- |-.|.
T Consensus 663 ~~F~ADAvIHfGtHGtL-EwLPGK~vGLS-~~cwPd~LiGdlPn 704 (1353)
T PLN03241 663 DGYGADAVIHFGMHGTV-EWLPGQPLGND-RLSWSDELLGGLPN 704 (1353)
T ss_pred cccCCCeEEEccCCcCc-ccCCCccccCC-cccChHHHhCCCCE
Confidence 66789999999999853 33333333333 46788865 45553
No 27
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=25.79 E-value=36 Score=27.39 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=15.1
Q ss_pred CccCCcEEEEecccCCC
Q 031718 17 HRLAPQCEIHVGVNSGS 33 (154)
Q Consensus 17 ~~~~pd~vih~G~~~~~ 33 (154)
++++||+||++|.+++-
T Consensus 65 ~~f~~~~IIn~G~aG~l 81 (236)
T PRK06714 65 SEFQPDELFMTGICGSL 81 (236)
T ss_pred HhCCCCEEEEEEcccCC
Confidence 78899999999999863
No 28
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=25.35 E-value=39 Score=33.95 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=26.0
Q ss_pred CccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCC-CCCCC
Q 031718 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQL-GWQPQ 59 (154)
Q Consensus 17 ~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~-G~~p~ 59 (154)
+.++.|+|||||.|+.- ....=+..=.. ..++||.- |-.|.
T Consensus 600 ~~F~ADAviH~GtHGtl-EwLPGK~vGLS-~~cwPd~liGdlPn 641 (1220)
T PLN03069 600 KIFKADAVLHFGTHGSL-EFMPGKQVGMS-DACYPDSLIGNIPN 641 (1220)
T ss_pred hhcCCCEEEEcCCCCCc-ccCCCccccCC-cccChHHHhCCCCE
Confidence 45678999999999853 33333333333 46788874 55664
No 29
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=24.82 E-value=1.3e+02 Score=18.33 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 031718 123 SLFVHVPLFSTIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 123 ~~FVHVP~~~~~~~e~~~~~v~~lI~~ia~~ 153 (154)
.+-||+.. ...+.|+..+++.++-+.+++.
T Consensus 2 ~i~i~i~~-~grt~eqK~~l~~~it~~l~~~ 31 (63)
T TIGR00013 2 FVNIYILK-EGRTDEQKRQLIEGVTEAMAET 31 (63)
T ss_pred EEEEEECC-CCCCHHHHHHHHHHHHHHHHHH
Confidence 34556652 2246777777888887777764
No 30
>PRK15324 type III secretion system lipoprotein PrgK; Provisional
Probab=24.62 E-value=4e+02 Score=21.92 Aligned_cols=86 Identities=8% Similarity=0.095 Sum_probs=51.6
Q ss_pred CCcccccccCCc---HHHHHHHHHHCCCceEecCCCC----cchhhHHHHHHHHHHhhcCCc----eEE-EEcCCCC--C
Q 031718 68 GGISRSRQTSLS---TEAILKFLKKKGFDVVISDDAG----RFVCNYVYYHSLRFAEQKGHK----SLF-VHVPLFS--T 133 (154)
Q Consensus 68 g~~~~~l~T~l~---~~~l~~~l~~~g~~v~~S~dAG----~ylCn~iyY~sL~~~~~~~~~----~~F-VHVP~~~--~ 133 (154)
|+....|.++++ ..+++..|.+.|++.+++++.+ -++=.--++.+.......+-| ..| --.|.-. .
T Consensus 17 ~c~~~~Lys~L~~~dAneIv~~L~~~gI~y~~~~~gk~G~tI~V~~~d~~~Ar~~La~~GLP~~~~~~~~eif~~~~l~s 96 (252)
T PRK15324 17 GCKDKDLLKGLDQEQANEVIAVLQMHNIEANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPADSLVS 96 (252)
T ss_pred CCCeehhhcCCCHHHHHHHHHHHHHCCCCeEeccCCCCceEEEEcHHHHHHHHHHHHHcCCCCCCCCCHHHHccCCCCCC
Confidence 443334566674 4578999999999999987652 466667777777776554322 232 2223222 1
Q ss_pred CChHHHHHHHHHHHHHHHhh
Q 031718 134 IDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 134 ~~~e~~~~~v~~lI~~ia~~ 153 (154)
-+.+...+....+=.+|+++
T Consensus 97 S~~~Ek~r~~~ALe~ELarT 116 (252)
T PRK15324 97 SPRAEKARLYSAIEQRLEQS 116 (252)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 23345566677776666653
No 31
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=24.59 E-value=41 Score=33.83 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=25.3
Q ss_pred CccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCC-CCCCC
Q 031718 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQL-GWQPQ 59 (154)
Q Consensus 17 ~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~-G~~p~ 59 (154)
+.++.|+|||||.|+.- ....=+..=.. ..+.||.- |..|.
T Consensus 573 ~~f~ADAviH~GtHGtl-EwLPGK~~GLS-~~cwPd~liG~lP~ 614 (1216)
T TIGR02025 573 RDFKADAVLHFGTHGSL-EFMPGKQTGLT-GECWPDRLLGDLPN 614 (1216)
T ss_pred hhcCCCEEEECCCCcCc-ccCCCccccCC-cccChHHHhCCCCE
Confidence 45678999999999853 33333333332 46788865 44553
No 32
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=24.30 E-value=42 Score=33.74 Aligned_cols=40 Identities=20% Similarity=0.402 Sum_probs=24.6
Q ss_pred CccCCcEEEEecccCCCcceeee-eeEecCCCCCCCCCC-CCCCC
Q 031718 17 HRLAPQCEIHVGVNSGSSKFALE-RRAVNEATFLCPDQL-GWQPQ 59 (154)
Q Consensus 17 ~~~~pd~vih~G~~~~~~~i~lE-~~A~N~~~~~~pD~~-G~~p~ 59 (154)
+.++.|+|||||.|+.- ....= ++|-. ..+.||.- |-.|.
T Consensus 593 ~~F~ADAviH~GtHGtl-EwLPGK~vGLS--~~cwPd~liGdlP~ 634 (1209)
T PRK13405 593 EDFGADAVLHFGTHGAL-EFMPGKQAGLS--AACWPDRLIGDLPN 634 (1209)
T ss_pred hhcCCCEEEECCCCccc-ccCCCccccCC--cccChHHHhCCCCE
Confidence 45678999999999853 22232 33333 35678864 44553
No 33
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=23.92 E-value=1.2e+02 Score=18.72 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=18.6
Q ss_pred ceEEEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 031718 122 KSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 122 ~~~FVHVP~~~~~~~e~~~~~v~~lI~~ia~~ 153 (154)
|.+-||+.. ..+.|+.++++.++-+.+++.
T Consensus 2 P~v~i~l~~--grt~eqk~~l~~~it~~l~~~ 31 (64)
T PRK01964 2 PIVQIQLLE--GRPEEKIKNLIREVTEAISAT 31 (64)
T ss_pred CEEEEEEeC--CCCHHHHHHHHHHHHHHHHHH
Confidence 334455443 346777778888877777654
No 34
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=23.23 E-value=45 Score=33.78 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=25.3
Q ss_pred CccCCcEEEEecccCCCcceeeeeeEecCCCCCCCCCC-CCCCC
Q 031718 17 HRLAPQCEIHVGVNSGSSKFALERRAVNEATFLCPDQL-GWQPQ 59 (154)
Q Consensus 17 ~~~~pd~vih~G~~~~~~~i~lE~~A~N~~~~~~pD~~-G~~p~ 59 (154)
+.++.|+|||||.|+.- ....=+..=.. ..+.||.- |-.|.
T Consensus 587 ~~F~ADAviH~GtHGtl-EwLPGK~vGLS-~~cwPd~liG~lP~ 628 (1310)
T PRK12493 587 KVWGADAVLHFGTHGAL-EFMPGKQMGMS-ASCWPDRLIGSLPN 628 (1310)
T ss_pred hhcCCCEEEECCCCcCc-ccCCCccccCC-cccChHHHhCCCCE
Confidence 45678999999999853 33333333222 36788865 55553
No 35
>PRK09989 hypothetical protein; Provisional
Probab=22.73 E-value=3.9e+02 Score=21.08 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=39.7
Q ss_pred CCcHHHHHHHHHHCCCceEecCC-C-----Ccc---hhh-------HHHHHHHHHHhhcCCceEEEEcCCCCC-CChHHH
Q 031718 77 SLSTEAILKFLKKKGFDVVISDD-A-----GRF---VCN-------YVYYHSLRFAEQKGHKSLFVHVPLFST-IDEDTQ 139 (154)
Q Consensus 77 ~l~~~~l~~~l~~~g~~v~~S~d-A-----G~y---lCn-------~iyY~sL~~~~~~~~~~~FVHVP~~~~-~~~e~~ 139 (154)
.++.+++.+.+.+.|+.+..-.- . |.+ .+. ..+-+++..++.-+++.+.+|.+..+. .+.+..
T Consensus 39 ~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~~~~~ 118 (258)
T PRK09989 39 DYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALALNCEQVHVMAGVVPAGEDAERY 118 (258)
T ss_pred cCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHhCcCEEEECccCCCCCCCHHHH
Confidence 36678899999999998664321 1 211 010 113344444445577877777665432 233433
Q ss_pred HHHHHHHHHHHHh
Q 031718 140 MQFVATLFEAVAS 152 (154)
Q Consensus 140 ~~~v~~lI~~ia~ 152 (154)
.+.+.+-++.+++
T Consensus 119 ~~~~~~~l~~l~~ 131 (258)
T PRK09989 119 RAVFIDNLRYAAD 131 (258)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444443
No 36
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=22.02 E-value=30 Score=23.27 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=9.9
Q ss_pred eEecCCCCcchhh
Q 031718 94 VVISDDAGRFVCN 106 (154)
Q Consensus 94 v~~S~dAG~ylCn 106 (154)
++.++|.|.|.|-
T Consensus 71 v~~~d~~G~Y~C~ 83 (98)
T cd05758 71 TQESDFQTSYNCT 83 (98)
T ss_pred ccccccceeEEEE
Confidence 4455779999994
No 37
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=22.01 E-value=1.6e+02 Score=20.59 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=26.6
Q ss_pred CCceEEEEcCCCCCCChHHHHHHHHHHHHHHHhh
Q 031718 120 GHKSLFVHVPLFSTIDEDTQMQFVATLFEAVAST 153 (154)
Q Consensus 120 ~~~~~FVHVP~~~~~~~e~~~~~v~~lI~~ia~~ 153 (154)
..++.||||=.....+.|+-+++..+|-+.|++.
T Consensus 55 ~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~ 88 (116)
T PTZ00397 55 HDGCCFVRVTSIGGISRSNNSSIAAAITKILASH 88 (116)
T ss_pred CCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 4699999999888777877777777777766654
No 38
>PF13107 DUF3964: Protein of unknown function (DUF3964)
Probab=22.00 E-value=33 Score=24.39 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=13.9
Q ss_pred HHHhhcCCceEEEEcCCCC
Q 031718 114 RFAEQKGHKSLFVHVPLFS 132 (154)
Q Consensus 114 ~~~~~~~~~~~FVHVP~~~ 132 (154)
......+++.-|||+|..+
T Consensus 77 aF~~e~~~k~FFv~Lp~i~ 95 (109)
T PF13107_consen 77 AFADEMKCKAFFVNLPEIE 95 (109)
T ss_pred HHhhhhhhHHHeeeCchhh
Confidence 3333347899999999876
No 39
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=21.92 E-value=49 Score=26.42 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.6
Q ss_pred CccCCcEEEEecccCCCc
Q 031718 17 HRLAPQCEIHVGVNSGSS 34 (154)
Q Consensus 17 ~~~~pd~vih~G~~~~~~ 34 (154)
++++||.||++|.+++-+
T Consensus 65 ~~f~~~~II~~G~AG~l~ 82 (233)
T PRK14697 65 HKFDVDAIINTGVAGGLH 82 (233)
T ss_pred HhcCCCEEEEEecccCCC
Confidence 688999999999998743
No 40
>PF01514 YscJ_FliF: Secretory protein of YscJ/FliF family; InterPro: IPR006182 This domain is found in proteins that are related to the YscJ lipoprotein, where it covers most of the sequence, and the flagellar M-ring protein FliF, where it covers the N-terminal region. The members of the YscJ family are thought to be involved in secretion of several proteins. The FliF protein ring is thought to be part of the export apparatus for flagellar proteins, based on the similarity to YscJ proteins [].; PDB: 1YJ7_A 2Y9J_d.
Probab=21.45 E-value=1.9e+02 Score=22.81 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=46.1
Q ss_pred cccCC---cHHHHHHHHHHCCCceEecCCCCc---chhhHHHHHHHHHHhhcCCc----eEE---EEcCCCCCCChHHHH
Q 031718 74 RQTSL---STEAILKFLKKKGFDVVISDDAGR---FVCNYVYYHSLRFAEQKGHK----SLF---VHVPLFSTIDEDTQM 140 (154)
Q Consensus 74 l~T~l---~~~~l~~~l~~~g~~v~~S~dAG~---ylCn~iyY~sL~~~~~~~~~----~~F---VHVP~~~~~~~e~~~ 140 (154)
|.+++ +..++...|.+.|++.+++.|-+. ++=.--++++.......+.+ .+| ..-..+..-+.+.+.
T Consensus 31 L~~~l~~~da~~i~~~L~~~gI~y~~~~~g~~~~I~Vp~~~~~~ar~~La~~glp~~~~~g~~~~~~~~~~~~T~~~~~~ 110 (206)
T PF01514_consen 31 LYSGLDEEDANEIVAALDENGIPYKLSDDGGTWTILVPEDQVARARMLLASQGLPKSGFSGFEELFDNSSFGTTDFEEKV 110 (206)
T ss_dssp EEEEE-HHHHHHHHHHHHHTT--EEEEE-TTSEEEEEEGGGHHHHHHHHHHTT-S------CCHHTTT-S---SHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHCCCCcEecCCCCeeEEEeCHHHHHHHHHHHHHcCCCCCCCCCHHHHhccCCCCCCHHHHHH
Confidence 44555 456789999999999999999888 88888888887766555422 233 222333323344555
Q ss_pred HHHHHHHHHHHh
Q 031718 141 QFVATLFEAVAS 152 (154)
Q Consensus 141 ~~v~~lI~~ia~ 152 (154)
+..+.+=.+|++
T Consensus 111 ~~~~ale~eL~~ 122 (206)
T PF01514_consen 111 NYQRALEGELER 122 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 556666555554
No 41
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=21.21 E-value=34 Score=22.68 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=9.8
Q ss_pred cCCCCcchhhHH
Q 031718 97 SDDAGRFVCNYV 108 (154)
Q Consensus 97 S~dAG~ylCn~i 108 (154)
..|+|.|.|...
T Consensus 64 ~~D~G~Y~C~A~ 75 (90)
T cd04974 64 FDDAGEYTCLAG 75 (90)
T ss_pred cccCcEEEEEee
Confidence 369999999764
No 42
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=21.16 E-value=23 Score=21.98 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=8.7
Q ss_pred CCCCcchhhH
Q 031718 98 DDAGRFVCNY 107 (154)
Q Consensus 98 ~dAG~ylCn~ 107 (154)
.|+|.|.|..
T Consensus 45 ~D~G~Y~C~a 54 (69)
T cd05725 45 GDEGSYTCEA 54 (69)
T ss_pred hHCEEEEEEE
Confidence 6999999975
No 43
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=21.06 E-value=29 Score=21.91 Aligned_cols=11 Identities=27% Similarity=0.749 Sum_probs=9.2
Q ss_pred cCCCCcchhhH
Q 031718 97 SDDAGRFVCNY 107 (154)
Q Consensus 97 S~dAG~ylCn~ 107 (154)
..|+|.|.|..
T Consensus 49 ~~D~G~Y~C~A 59 (75)
T cd05763 49 IEDTGVYSCTA 59 (75)
T ss_pred cccCEEEEEEE
Confidence 36999999976
No 44
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=20.79 E-value=26 Score=23.40 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.8
Q ss_pred CCCCcchhhHHH
Q 031718 98 DDAGRFVCNYVY 109 (154)
Q Consensus 98 ~dAG~ylCn~iy 109 (154)
.|+|.|.|....
T Consensus 75 ~D~G~Y~C~v~~ 86 (100)
T cd05713 75 SDEGLYTCFFQS 86 (100)
T ss_pred hhCEEEEEEEec
Confidence 689999998654
No 45
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=20.43 E-value=31 Score=22.81 Aligned_cols=14 Identities=21% Similarity=0.980 Sum_probs=10.6
Q ss_pred cCCCCcchhhHHHH
Q 031718 97 SDDAGRFVCNYVYY 110 (154)
Q Consensus 97 S~dAG~ylCn~iyY 110 (154)
..|+|.|.|...-|
T Consensus 71 ~~D~G~Y~C~v~~~ 84 (98)
T cd05718 71 LEDEGNYICEFATF 84 (98)
T ss_pred cccCEEEEEEEEeC
Confidence 36889999987533
No 46
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=20.42 E-value=14 Score=26.84 Aligned_cols=12 Identities=33% Similarity=0.722 Sum_probs=9.8
Q ss_pred CCCCcchhhHHH
Q 031718 98 DDAGRFVCNYVY 109 (154)
Q Consensus 98 ~dAG~ylCn~iy 109 (154)
.|+|+|-|..++
T Consensus 89 sD~G~Y~C~V~~ 100 (117)
T cd05901 89 SDAGVYRCEVMH 100 (117)
T ss_pred ccCEEEEEEEEE
Confidence 588999998754
No 47
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=20.35 E-value=32 Score=19.59 Aligned_cols=10 Identities=30% Similarity=0.926 Sum_probs=8.2
Q ss_pred cCCCCcchhh
Q 031718 97 SDDAGRFVCN 106 (154)
Q Consensus 97 S~dAG~ylCn 106 (154)
..|+|.|.|.
T Consensus 48 ~~d~G~Y~C~ 57 (63)
T smart00408 48 LEDSGEYTCV 57 (63)
T ss_pred cccCEEEEEE
Confidence 4689999995
No 48
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=20.29 E-value=1.7e+02 Score=23.87 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=26.7
Q ss_pred CCCceecCCCCcccccccCCcHHHHHHHHHHC-----CCceEec
Q 031718 59 QQIPVVLEDGGISRSRQTSLSTEAILKFLKKK-----GFDVVIS 97 (154)
Q Consensus 59 ~~~~i~~~~g~~~~~l~T~l~~~~l~~~l~~~-----g~~v~~S 97 (154)
.++|++. .|- .+.+.++++++++.+++- .+|+.+|
T Consensus 55 ~~ePvV~-HG~---tlts~i~f~dv~~aI~~~AF~~s~yPvIlS 94 (227)
T cd08594 55 DGEPVVH-HGY---TLTSKILFRDVIETINKYAFIKNEYPVILS 94 (227)
T ss_pred CCCcEEe-eCC---CcccCcCHHHHHHHHHHhhccCCCCCEEEE
Confidence 3567776 354 467999999999999984 5677777
Done!