Query 031719
Match_columns 154
No_of_seqs 113 out of 140
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:24:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/031719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3319 Predicted membrane pro 100.0 2.4E-82 5.3E-87 499.0 10.8 153 1-153 1-153 (153)
2 PF04061 ORMDL: ORMDL family ; 100.0 1.3E-77 2.8E-82 466.9 9.7 135 12-146 1-136 (136)
3 COG5081 Predicted membrane pro 100.0 8.2E-66 1.8E-70 410.3 6.2 146 6-152 27-172 (180)
4 KOG4463 Uncharacterized conser 37.6 12 0.00026 33.3 0.3 50 103-153 102-152 (323)
5 PHA02291 hypothetical protein 28.1 58 0.0013 25.6 2.6 16 20-35 2-17 (132)
6 PF04120 Iron_permease: Low af 15.6 1.1E+02 0.0025 23.9 1.9 53 16-71 10-63 (132)
7 PRK13693 (3R)-hydroxyacyl-ACP 14.9 1.7E+02 0.0037 22.2 2.7 33 82-114 2-34 (142)
8 COG4327 Predicted membrane pro 13.8 81 0.0018 24.0 0.7 22 13-34 51-72 (101)
9 PF12273 RCR: Chitin synthesis 13.0 1.4E+02 0.0031 22.3 1.8 15 24-38 2-16 (130)
10 PF05630 NPP1: Necrosis induci 10.7 58 0.0013 26.9 -1.1 13 80-92 165-177 (206)
No 1
>KOG3319 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.4e-82 Score=499.00 Aligned_cols=153 Identities=52% Similarity=0.905 Sum_probs=151.1
Q ss_pred CccccCCCCCCCCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhHHHHHhhhheeeeeecCcCCCCCCccc
Q 031719 1 MYVRTVPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFADDQGIY 80 (154)
Q Consensus 1 ~~~~~~~~~~~N~N~~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~~WTltn~~h~~~ty~~fHwvKGtPf~~~qG~y 80 (154)
++.++.+++|+|+|++|++|||+|++|+++|+++|++++++||+|.+++|||||++|+++||+||||+|||||++|||+|
T Consensus 1 m~~~~~~~~~~N~Nt~w~~~rG~Wl~yil~i~ll~l~~ls~p~~s~~~aWTltnl~h~~~tyi~fH~vkGtPF~~d~g~y 80 (153)
T KOG3319|consen 1 MMDVADQHSDVNPNTRWVNQRGAWLIYILIILLLHLVLLSIPFVSPPWAWTLTNLIHNIGTYIFFHWVKGTPFEDDQGAY 80 (153)
T ss_pred CCccccCcCcCCCCceeeecCchHHHHHHHHHHHHHHHHhCccCCcchhHHHHHHHHHHhHheeEEEecCCCCcCCCcHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCCCCCCccceeeehhhHHHHHHhhcccCCCCCchhhhHHhhhhhhhcCCCccceeeEeccccC
Q 031719 81 NGLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINAD 153 (154)
Q Consensus 81 ~~LT~WEQID~g~q~T~trKFL~~vPIvLFllashyt~yd~~~f~iN~~~l~~vviPKLP~~HrvRifGiN~~ 153 (154)
|+||||||||+|.||||+||||+++||+||++||||||||..+|++|++|+++|++||||+||||||||||||
T Consensus 81 ~~lT~WEQid~g~q~T~~RKFLtivPIvLfl~~s~yt~y~~~~F~~N~~sl~~v~iPKlp~~H~vRIfgIn~~ 153 (153)
T KOG3319|consen 81 RLLTHWEQIDDGVQYTPSRKFLTIVPIVLFLLASHYTKYDHPLFLLNTLSLFVVVIPKLPQMHGVRIFGINKY 153 (153)
T ss_pred hhccHHHHhccccccccchhhhhHHHHHHHHHHHHhhccCcchhHHHHHHHHhhhhccccccceEEEecccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates. ORMDLs are involved in protein folding in the endoplasmic reticulum. ; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.3e-77 Score=466.88 Aligned_cols=135 Identities=50% Similarity=0.925 Sum_probs=134.1
Q ss_pred CCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhHHHHHhhhheeeeeecCcCCCC-CCcccCCCcceeeec
Q 031719 12 NRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFAD-DQGIYNGLTWWEQID 90 (154)
Q Consensus 12 N~N~~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~~WTltn~~h~~~ty~~fHwvKGtPf~~-~qG~y~~LT~WEQID 90 (154)
|+|++|+|+||+|++|+++|+++|++++++||+|+++|||+||++|+++||+||||+||+||++ |||+||+||+|||||
T Consensus 1 N~N~~W~~~~g~W~~yi~li~~~~l~~~~ip~~s~~~~WTltn~~h~~~ty~~fHwvKGtPf~~~~qG~y~~LT~WEQID 80 (136)
T PF04061_consen 1 NPNANWVNSRGAWLIYIVLILLLKLILLSIPGFSQEWAWTLTNLIHNIITYIFFHWVKGTPFEFMDQGAYDNLTMWEQID 80 (136)
T ss_pred CCCchhccCccHHHHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHhheeeecCCCCCCCCCcccccCcHHHhcc
Confidence 8999999999999999999999999999999999999999999999999999999999999977 999999999999999
Q ss_pred CCCCCCccceeeehhhHHHHHHhhcccCCCCCchhhhHHhhhhhhhcCCCccceee
Q 031719 91 NGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVR 146 (154)
Q Consensus 91 ~g~q~T~trKFL~~vPIvLFllashyt~yd~~~f~iN~~~l~~vviPKLP~~HrvR 146 (154)
+|+||||+||||++|||+|||+||||||||+.+|.+|++++++|++||||+|||||
T Consensus 81 ~g~q~TptrKFL~~vPivLfllas~yt~y~~~~f~iN~~~l~~vvipKLP~~H~vR 136 (136)
T PF04061_consen 81 DGAQYTPTRKFLTIVPIVLFLLASHYTHYDPQHFFINFIALLVVVIPKLPFMHRVR 136 (136)
T ss_pred cCCcCCcceeeeehhHHHHHHHHHHhhcCChhHHHHHHHHHHHHhhcCCchhccCC
Confidence 99999999999999999999999999999999999999999999999999999999
No 3
>COG5081 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=8.2e-66 Score=410.31 Aligned_cols=146 Identities=29% Similarity=0.577 Sum_probs=140.9
Q ss_pred CCCCCCCCCcceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhhhHHHHHhhhheeeeeecCcCCCCCCcccCCCcc
Q 031719 6 VPPTDLNRNTEWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTLVHLSHFFVTYHFFHWKKGTPFADDQGIYNGLTW 85 (154)
Q Consensus 6 ~~~~~~N~N~~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~~WTltn~~h~~~ty~~fHwvKGtPf~~~qG~y~~LT~ 85 (154)
...+++|+|++|++|||+|++|+++|+++|+++..+ |++.|++|||||++|+++||+||||+||+||++|+|+||+|||
T Consensus 27 dq~~~~n~Na~Wv~qrGaWiIHvvvI~lLkl~~s~~-~~t~el~WtLtnmtY~igsfImFH~i~GtPFdfnggaYd~lTm 105 (180)
T COG5081 27 DQQVLPNMNATWVDQRGAWIIHVVVILLLKLFYSLF-GVTDELGWTLTNMTYNIGSFIMFHLIKGTPFDFNGGAYDNLTM 105 (180)
T ss_pred hhcccccccchhhhccCceehHHHHHHHHHHHHHHh-cCCchhhhhhHHHHHHhhhheeEEeecCCCcccCCchhhhhhH
Confidence 445678999999999999999999999999997777 8999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCCccceeeehhhHHHHHHhhcccCCCCCchhhhHHhhhhhhhcCCCccceeeEecccc
Q 031719 86 WEQIDNGKQLTRNRKFLTVVPVVLYLIASHTTDYQNPMLFFNTLAVFVLVVAKFPNMHKVRIFGINA 152 (154)
Q Consensus 86 WEQID~g~q~T~trKFL~~vPIvLFllashyt~yd~~~f~iN~~~l~~vviPKLP~~HrvRifGiN~ 152 (154)
|||+|+|.||||+||||.++||+||++++||+|||..+|.+|+.+++.|++||||++||+||+||.+
T Consensus 106 WEQl~e~~~yTP~rkfll~~PiilFl~sn~y~~~n~~lF~~ni~~lf~v~iPKlg~~Hr~RI~~i~~ 172 (180)
T COG5081 106 WEQLDEETLYTPDRKFLLLVPIILFLASNHYVHYNIFLFLINITSLFLVVIPKLGFTHRLRISIIPG 172 (180)
T ss_pred HHHhccccccCcchhHHHHHHHHHHHHHhhheeehhhhHHHHHHHHHhhhccccchhhhhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998764
No 4
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.62 E-value=12 Score=33.33 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=35.4
Q ss_pred ehhhHHHHHHhhcccCCCC-CchhhhHHhhhhhhhcCCCccceeeEeccccC
Q 031719 103 TVVPVVLYLIASHTTDYQN-PMLFFNTLAVFVLVVAKFPNMHKVRIFGINAD 153 (154)
Q Consensus 103 ~~vPIvLFllashyt~yd~-~~f~iN~~~l~~vviPKLP~~HrvRifGiN~~ 153 (154)
.+.||.++|......+|+. +..-+|+++..- .-=-+|..|++|+||+|-|
T Consensus 102 l~~~il~~l~~~~~~nl~~~qp~~liFa~~~~-~y~~ip~~~f~r~f~~~f~ 152 (323)
T KOG4463|consen 102 LLEVILLSLLKDTTANLLTSQPYGLIFASFIP-FYLDIPVSTFFRVFGVNFS 152 (323)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCceeeeeccc-eEEEecceeEEEeeccccc
Confidence 4569999999999888873 344466655421 1123679999999999965
No 5
>PHA02291 hypothetical protein
Probab=28.10 E-value=58 Score=25.60 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=12.9
Q ss_pred CCchhhhHHHHHHHHH
Q 031719 20 YPGVWTTYLSILFISW 35 (154)
Q Consensus 20 ~~G~W~~yiv~i~l~~ 35 (154)
|+-+|++|+++++++-
T Consensus 2 S~K~~iFYiL~~~VL~ 17 (132)
T PHA02291 2 SRKASIFYILVVIVLA 17 (132)
T ss_pred CcchhhHHHHHHHHHH
Confidence 6779999999887543
No 6
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=15.62 E-value=1.1e+02 Score=23.94 Aligned_cols=53 Identities=11% Similarity=0.254 Sum_probs=32.0
Q ss_pred ceecCCchhhhHHHHHHHHHHHHHhhcCCCcCcchhh-hHHHHHhhhheeeeeecCc
Q 031719 16 EWFTYPGVWTTYLSILFISWLLVLSLFNCSSGMAWTL-VHLSHFFVTYHFFHWKKGT 71 (154)
Q Consensus 16 ~W~~~~G~W~~yiv~i~l~~l~~l~ip~~s~~~~WTl-tn~~h~~~ty~~fHwvKGt 71 (154)
.|..++.+-++.+++|+ ++++.- |.+.-+-.|+| .|..=.++||.|.=-+.++
T Consensus 10 ~~~gs~~~f~~~~~~Ii-~W~i~G--p~~~~sdtWQLviNt~ttIitFlmvfLIQn~ 63 (132)
T PF04120_consen 10 DVAGSPWAFVIAVAVII-VWAISG--PVFGFSDTWQLVINTATTIITFLMVFLIQNT 63 (132)
T ss_pred HHHCCHHHHHHHHHHHH-HHHHHh--ccccCcchHHHHHccHHHHHHHHHHHHHHhh
Confidence 45556666666666555 344433 43444455554 5888888899887655554
No 7
>PRK13693 (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional
Probab=14.93 E-value=1.7e+02 Score=22.20 Aligned_cols=33 Identities=27% Similarity=0.237 Sum_probs=26.6
Q ss_pred CCcceeeecCCCCCCccceeeehhhHHHHHHhh
Q 031719 82 GLTWWEQIDNGKQLTRNRKFLTVVPVVLYLIAS 114 (154)
Q Consensus 82 ~LT~WEQID~g~q~T~trKFL~~vPIvLFllas 114 (154)
.|..||++.-|+.+.+.++-++--=|.+|-.+|
T Consensus 2 ~~~~~ed~~vG~~~~~~~~tvt~~di~~FA~~s 34 (142)
T PRK13693 2 ALREFSSVKVGDQLPEKTYPLTRQDLVNYAGVS 34 (142)
T ss_pred CcccHhHcCCCCCcCccceeeCHHHHHHHHHHh
Confidence 367799999999996555568888888888887
No 8
>COG4327 Predicted membrane protein [Function unknown]
Probab=13.83 E-value=81 Score=24.04 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=18.3
Q ss_pred CCcceecCCchhhhHHHHHHHH
Q 031719 13 RNTEWFTYPGVWTTYLSILFIS 34 (154)
Q Consensus 13 ~N~~W~~~~G~W~~yiv~i~l~ 34 (154)
|=.-||.+.|+=++|+++|++-
T Consensus 51 pf~ywma~QGsiitfVvlifvy 72 (101)
T COG4327 51 PFGYWMAQQGSIITFVVLIFVY 72 (101)
T ss_pred chhhhhhcCCCeeehHHHHHHH
Confidence 3356999999999999999853
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=12.99 E-value=1.4e+02 Score=22.33 Aligned_cols=15 Identities=20% Similarity=0.587 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHH
Q 031719 24 WTTYLSILFISWLLV 38 (154)
Q Consensus 24 W~~yiv~i~l~~l~~ 38 (154)
|++.+++|+++-+++
T Consensus 2 W~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 2 WVLFAIIIVAILLFL 16 (130)
T ss_pred eeeHHHHHHHHHHHH
Confidence 555555555444443
No 10
>PF05630 NPP1: Necrosis inducing protein (NPP1); InterPro: IPR008701 This family consists of several NPP1-like necrosis inducing proteins from oomycetes, fungi and bacteria. Infiltration of NPP1 into leaves of Arabidopsis thaliana plants result in transcript accumulation of pathogenesis-related (PR) genes, production of ROS and ethylene, callose apposition, and HR-like cell death [].; PDB: 3ST1_A 3GNZ_P 3GNU_P.
Probab=10.67 E-value=58 Score=26.93 Aligned_cols=13 Identities=31% Similarity=0.879 Sum_probs=8.0
Q ss_pred cCCCcceeeecCC
Q 031719 80 YNGLTWWEQIDNG 92 (154)
Q Consensus 80 y~~LT~WEQID~g 92 (154)
+..|=+|||+.+.
T Consensus 165 ~qdLI~Weqlt~~ 177 (206)
T PF05630_consen 165 FQDLIMWEQLTDA 177 (206)
T ss_dssp ---EEECCCS-HH
T ss_pred ccChhhhccCCHH
Confidence 9999999999873
Done!