Query 031719
Match_columns 154
No_of_seqs 113 out of 140
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/031719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/031719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9p_A Pheromone alpha factor 43.9 16 0.00056 25.3 2.8 27 107-136 37-63 (80)
2 2lpd_A Uncharacterized protein 24.2 23 0.00079 25.6 0.8 23 70-97 17-39 (95)
3 2khr_A Protein MBTH; sideropho 19.2 34 0.0012 23.5 0.8 21 71-96 7-27 (74)
4 2pst_X Hypothetical protein PA 15.5 30 0.001 23.8 -0.2 21 71-96 5-25 (74)
5 1yfn_E Sigma-E factor negative 14.6 24 0.00083 20.9 -0.7 10 138-147 11-20 (32)
6 3gnz_P 25 kDa protein elicitor 11.4 43 0.0015 27.0 -0.4 19 74-92 164-182 (213)
7 3oae_A Late major capsid prote 10.9 65 0.0022 28.8 0.5 25 78-103 393-424 (428)
8 1dzl_A Late major capsid prote 10.8 99 0.0034 28.2 1.7 35 68-103 429-470 (505)
9 3iyj_F Major capsid protein L1 10.8 86 0.0029 28.5 1.3 28 75-103 433-467 (495)
10 3st1_A Necrosis-and ethylene-i 9.5 50 0.0017 26.6 -0.6 19 74-92 163-181 (214)
No 1
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=43.86 E-value=16 Score=25.33 Aligned_cols=27 Identities=15% Similarity=0.683 Sum_probs=20.6
Q ss_pred HHHHHHhhcccCCCCCchhhhHHhhhhhhh
Q 031719 107 VVLYLIASHTTDYQNPMLFFNTLAVFVLVV 136 (154)
Q Consensus 107 IvLFllashyt~yd~~~f~iN~~~l~~vvi 136 (154)
++|++++. +-....|++|.+++++.++
T Consensus 37 iil~lltk---krrspiF~lN~~~L~l~ii 63 (80)
T 2k9p_A 37 IVVWITSR---SRKTPIFIINQVSLFLIIL 63 (80)
T ss_dssp HHHHHHTC---CSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---cccChhhHHHHHHHHHHHH
Confidence 56666665 6777889999999887654
No 2
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=24.19 E-value=23 Score=25.62 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=16.5
Q ss_pred CcCCCCCCcccCCCcceeeecCCCCCCc
Q 031719 70 GTPFADDQGIYNGLTWWEQIDNGKQLTR 97 (154)
Q Consensus 70 GtPf~~~qG~y~~LT~WEQID~g~q~T~ 97 (154)
-.||++++|.|.- -++++.||+=
T Consensus 17 ~~PFDd~~~~f~V-----LvN~E~QYSL 39 (95)
T 2lpd_A 17 QGPGSMDDELYFV-----VRNNEGQYSV 39 (95)
T ss_dssp SCSCSSCCCCEEE-----EECSSCSCEE
T ss_pred cCCCcCCCCcEEE-----EEcCCCcccc
Confidence 3699887776554 4788888873
No 3
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=19.16 E-value=34 Score=23.54 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=15.7
Q ss_pred cCCCCCCcccCCCcceeeecCCCCCC
Q 031719 71 TPFADDQGIYNGLTWWEQIDNGKQLT 96 (154)
Q Consensus 71 tPf~~~qG~y~~LT~WEQID~g~q~T 96 (154)
.||+.++|.|.- -++++.||+
T Consensus 7 npfdd~~~~f~V-----lvN~E~QyS 27 (74)
T 2khr_A 7 NPFDDDNGAFFV-----LVNDEDQHS 27 (74)
T ss_dssp CCCSCCCSCEEE-----EEETTCSCE
T ss_pred CCCCCCCCeEEE-----EEcCCCccc
Confidence 799887776654 478888886
No 4
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=15.52 E-value=30 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=11.4
Q ss_pred cCCCCCCcccCCCcceeeecCCCCCC
Q 031719 71 TPFADDQGIYNGLTWWEQIDNGKQLT 96 (154)
Q Consensus 71 tPf~~~qG~y~~LT~WEQID~g~q~T 96 (154)
.||+.++|.|.- -++++.||+
T Consensus 5 npfdd~~~~f~V-----lvN~E~QyS 25 (74)
T 2pst_X 5 SVFDRDDIQFQV-----VVNHEEQYS 25 (74)
T ss_dssp -----CCSCEEE-----EEETTCCEE
T ss_pred CCCcCCCCeEEE-----EEcCCCccc
Confidence 799887776654 478888886
No 5
>1yfn_E Sigma-E factor negative regulatory protein; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli}
Probab=14.62 E-value=24 Score=20.87 Aligned_cols=10 Identities=50% Similarity=0.607 Sum_probs=8.4
Q ss_pred CCCccceeeE
Q 031719 138 KFPNMHKVRI 147 (154)
Q Consensus 138 KLP~~HrvRi 147 (154)
|+|+.|+||=
T Consensus 11 ~~pfw~kvrp 20 (32)
T 1yfn_E 11 KMPFWQKVRP 20 (32)
T ss_pred hChHHHHhhH
Confidence 6899999983
No 6
>3gnz_P 25 kDa protein elicitor; toxin, necrosi, ethyleneinducing, immunityassociated responses, plants; 1.35A {Pythium aphanidermatum} PDB: 3gnu_P
Probab=11.38 E-value=43 Score=27.03 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=15.8
Q ss_pred CCCCcccCCCcceeeecCC
Q 031719 74 ADDQGIYNGLTWWEQIDNG 92 (154)
Q Consensus 74 ~~~qG~y~~LT~WEQID~g 92 (154)
+.+.|++..|-+|||+-++
T Consensus 164 t~~~G~~q~LI~Weql~~~ 182 (213)
T 3gnz_P 164 TTSAGKQQPLIQWEQMTQA 182 (213)
T ss_dssp CSSCCBCCCEEEGGGSCHH
T ss_pred cCCCCCccCeeecccCCHH
Confidence 4567999999999998753
No 7
>3oae_A Late major capsid protein L1; jelly roll, receptor HSPG, virus capsid, VIR protein; HET: JHM IDS; 2.80A {Human papillomavirus} PDB: 2r5h_A 2r5j_A 2r5k_A
Probab=10.90 E-value=65 Score=28.85 Aligned_cols=25 Identities=32% Similarity=0.589 Sum_probs=16.9
Q ss_pred cccCCCcceeeecCCC-------CCCccceeee
Q 031719 78 GIYNGLTWWEQIDNGK-------QLTRNRKFLT 103 (154)
Q Consensus 78 G~y~~LT~WEQID~g~-------q~T~trKFL~ 103 (154)
.-|..++||| +|=.+ ||.=.||||.
T Consensus 393 DPy~~~~FW~-VdL~ekfS~dLdQ~pLGRkFL~ 424 (428)
T 3oae_A 393 DPLKKYTFWE-VNLKEKFSADLDQFPLGRKFLL 424 (428)
T ss_dssp CTTTTSCCEE-EECTTTCBSCGGGSHHHHHHHH
T ss_pred Cccccceeee-eecchhhhhcccCccchhhhhh
Confidence 3578899998 45444 4445788874
No 8
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} SCOP: b.121.6.1
Probab=10.83 E-value=99 Score=28.21 Aligned_cols=35 Identities=34% Similarity=0.543 Sum_probs=23.8
Q ss_pred ecCcCCCCCCcccCCCcceeeecCC-------CCCCccceeee
Q 031719 68 KKGTPFADDQGIYNGLTWWEQIDNG-------KQLTRNRKFLT 103 (154)
Q Consensus 68 vKGtPf~~~qG~y~~LT~WEQID~g-------~q~T~trKFL~ 103 (154)
.|-.|=.....-|..++||| +|=. .||.=.||||.
T Consensus 429 p~~~pp~ek~DPy~~~~FW~-VDL~ek~S~dLdQfpLGRkFL~ 470 (505)
T 1dzl_A 429 QKHTPPAPKEDPLKKYTFWE-VNLKEKFSADLDQFPLGRKFLL 470 (505)
T ss_dssp SCCCCCCCCCCTTTTSCCEE-EECTTCCBSCGGGSHHHHHHHH
T ss_pred CCCCCCCCCCCccccceeec-ccccccccccccccchHHHHHH
Confidence 45555555567899999998 3433 35555899875
No 9
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single cryo-EM, high resolution, late protein, VIR virus; 4.20A {Bovine papillomavirus type 1}
Probab=10.80 E-value=86 Score=28.55 Aligned_cols=28 Identities=32% Similarity=0.739 Sum_probs=19.5
Q ss_pred CCCcccCCCcceeeecCCC-------CCCccceeee
Q 031719 75 DDQGIYNGLTWWEQIDNGK-------QLTRNRKFLT 103 (154)
Q Consensus 75 ~~qG~y~~LT~WEQID~g~-------q~T~trKFL~ 103 (154)
....-|..++||| +|=.+ ||.=.||||.
T Consensus 433 ek~DPy~~~~FW~-VDL~ek~S~dLdQ~pLGRkFL~ 467 (495)
T 3iyj_F 433 AKEDPYAGFKFWN-IDLKEKLSLDLDQFPLGRRFLA 467 (495)
T ss_dssp SCCCGGGSSCCEE-EECSSSCBSCTTTSHHHHHHHH
T ss_pred CCCCccccceeee-eecchhhhhhccccchhhhHHh
Confidence 4446799999998 55444 5555788874
No 10
>3st1_A Necrosis-and ethylene-inducing protein; mpnep2, NLP family, unknown function, toxin; 1.80A {Moniliophthora perniciosa}
Probab=9.54 E-value=50 Score=26.62 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.9
Q ss_pred CCCCcccCCCcceeeecCC
Q 031719 74 ADDQGIYNGLTWWEQIDNG 92 (154)
Q Consensus 74 ~~~qG~y~~LT~WEQID~g 92 (154)
+...|++..|-+|||+-++
T Consensus 163 t~~~G~~q~LI~Weql~~~ 181 (214)
T 3st1_A 163 TDKGGDLPTLASWEGMGAD 181 (214)
T ss_dssp CSSCCBCCCEEETTTSCHH
T ss_pred ccCCCCccCeeecccCCHH
Confidence 5667999999999998753
Done!